Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629080 | RXI03783.1 | 56.977 | 344 | 116 | 5 | 32 | 347 | 34 | 373 | 7.44e-130 | 386 |
| Msa0629080 | RXI03783.1 | 65.323 | 124 | 38 | 3 | 22 | 143 | 207 | 327 | 2.70e-44 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629080 | sp|Q9C891|DIR20_ARATH | 60.638 | 188 | 70 | 2 | 160 | 347 | 4 | 187 | 3.82e-76 | 235 |
| Msa0629080 | sp|Q9C891|DIR20_ARATH | 56.738 | 141 | 58 | 2 | 3 | 143 | 4 | 141 | 3.76e-46 | 158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0628970 | Msa0629080 | 0.808820 | 2.566493e-50 | -8.615850e-47 |
| Msa0629080 | Msa0666620 | 0.812354 | 4.421415e-51 | -8.615850e-47 |
| Msa0629080 | Msa0666650 | 0.866626 | 2.484663e-65 | -8.615850e-47 |
| Msa0588870 | Msa0629080 | 0.819999 | 8.645386e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629080 | MtrunA17_Chr4g0005071 | 96.429 | 196 | 7 | 0 | 152 | 347 | 1 | 196 | 4.85e-132 | 374 |
| Msa0629080 | MtrunA17_Chr4g0005071 | 88.321 | 137 | 13 | 2 | 9 | 143 | 15 | 150 | 2.47e-80 | 243 |
| Msa0629080 | MtrunA17_Chr4g0005081 | 87.310 | 197 | 24 | 1 | 152 | 347 | 1 | 197 | 2.51e-118 | 340 |
| Msa0629080 | MtrunA17_Chr4g0005081 | 95.652 | 138 | 4 | 1 | 9 | 144 | 15 | 152 | 3.62e-91 | 271 |
| Msa0629080 | MtrunA17_Chr4g0005031 | 75.124 | 201 | 47 | 1 | 150 | 347 | 21 | 221 | 1.04e-103 | 303 |
| Msa0629080 | MtrunA17_Chr4g0005031 | 77.536 | 138 | 27 | 2 | 10 | 143 | 38 | 175 | 3.10e-72 | 223 |
| Msa0629080 | MtrunA17_Chr4g0005041 | 76.087 | 184 | 39 | 3 | 167 | 347 | 17 | 198 | 9.21e-99 | 290 |
| Msa0629080 | MtrunA17_Chr4g0005041 | 78.788 | 132 | 24 | 2 | 10 | 139 | 17 | 146 | 1.28e-70 | 218 |
| Msa0629080 | MtrunA17_Chr4g0005011 | 69.347 | 199 | 56 | 2 | 152 | 347 | 1 | 197 | 8.30e-89 | 265 |
| Msa0629080 | MtrunA17_Chr4g0005011 | 68.116 | 138 | 40 | 2 | 10 | 143 | 16 | 153 | 1.90e-62 | 197 |
| Msa0629080 | MtrunA17_Chr7g0259101 | 40.674 | 386 | 181 | 8 | 7 | 347 | 11 | 393 | 2.04e-85 | 263 |
| Msa0629080 | MtrunA17_Chr7g0243501 | 64.062 | 192 | 67 | 2 | 157 | 347 | 2 | 192 | 4.44e-78 | 237 |
| Msa0629080 | MtrunA17_Chr7g0243501 | 70.732 | 123 | 32 | 3 | 22 | 141 | 23 | 144 | 4.99e-47 | 157 |
| Msa0629080 | MtrunA17_Chr4g0005111 | 59.043 | 188 | 72 | 3 | 160 | 347 | 8 | 190 | 7.17e-74 | 226 |
| Msa0629080 | MtrunA17_Chr4g0005111 | 58.571 | 140 | 52 | 3 | 3 | 141 | 8 | 142 | 4.12e-48 | 160 |
| Msa0629080 | MtrunA17_Chr1g0175911 | 56.122 | 196 | 82 | 2 | 152 | 347 | 1 | 192 | 3.38e-67 | 209 |
| Msa0629080 | MtrunA17_Chr1g0175911 | 51.449 | 138 | 62 | 2 | 4 | 139 | 10 | 144 | 1.39e-38 | 135 |
| Msa0629080 | MtrunA17_Chr4g0005131 | 59.412 | 170 | 66 | 2 | 179 | 347 | 24 | 191 | 1.52e-63 | 200 |
| Msa0629080 | MtrunA17_Chr4g0005131 | 60.656 | 122 | 43 | 3 | 23 | 141 | 24 | 143 | 8.16e-40 | 139 |
| Msa0629080 | MtrunA17_Chr4g0005091 | 51.596 | 188 | 73 | 4 | 160 | 347 | 6 | 175 | 1.09e-55 | 179 |
| Msa0629080 | MtrunA17_Chr4g0005091 | 55.072 | 138 | 55 | 3 | 3 | 138 | 6 | 138 | 5.25e-42 | 144 |
| Msa0629080 | MtrunA17_Chr7g0259091 | 48.649 | 185 | 93 | 2 | 164 | 347 | 11 | 194 | 3.39e-54 | 176 |
| Msa0629080 | MtrunA17_Chr7g0259091 | 46.667 | 135 | 68 | 3 | 7 | 139 | 11 | 143 | 9.70e-32 | 118 |
| Msa0629080 | MtrunA17_Chr4g0037481 | 52.632 | 152 | 71 | 1 | 197 | 347 | 41 | 192 | 1.12e-52 | 172 |
| Msa0629080 | MtrunA17_Chr4g0037481 | 49.057 | 106 | 51 | 2 | 41 | 143 | 41 | 146 | 2.25e-29 | 111 |
| Msa0629080 | MtrunA17_Chr7g0259121 | 52.564 | 156 | 69 | 2 | 197 | 347 | 38 | 193 | 7.85e-51 | 168 |
| Msa0629080 | MtrunA17_Chr7g0259121 | 50.000 | 106 | 46 | 3 | 41 | 139 | 38 | 143 | 2.32e-25 | 101 |
| Msa0629080 | MtrunA17_Chr7g0259071 | 43.455 | 191 | 96 | 3 | 158 | 347 | 12 | 191 | 2.29e-50 | 166 |
| Msa0629080 | MtrunA17_Chr7g0259071 | 45.217 | 115 | 60 | 2 | 27 | 139 | 27 | 140 | 2.25e-30 | 114 |
| Msa0629080 | MtrunA17_Chr3g0085311 | 43.386 | 189 | 94 | 3 | 158 | 346 | 13 | 188 | 4.92e-44 | 150 |
| Msa0629080 | MtrunA17_Chr3g0085311 | 51.515 | 99 | 48 | 0 | 43 | 141 | 43 | 141 | 1.95e-26 | 103 |
| Msa0629080 | MtrunA17_Chr3g0085291 | 47.134 | 157 | 77 | 2 | 192 | 346 | 34 | 186 | 3.06e-43 | 147 |
| Msa0629080 | MtrunA17_Chr3g0085291 | 48.148 | 108 | 52 | 2 | 36 | 141 | 34 | 139 | 2.81e-26 | 103 |
| Msa0629080 | MtrunA17_Chr1g0177051 | 46.358 | 151 | 79 | 2 | 197 | 346 | 36 | 185 | 4.23e-42 | 145 |
| Msa0629080 | MtrunA17_Chr1g0177051 | 45.714 | 105 | 55 | 2 | 41 | 143 | 36 | 140 | 7.76e-24 | 96.7 |
| Msa0629080 | MtrunA17_Chr3g0136641 | 45.963 | 161 | 85 | 2 | 189 | 347 | 28 | 188 | 1.38e-40 | 141 |
| Msa0629080 | MtrunA17_Chr3g0136641 | 44.643 | 112 | 58 | 3 | 33 | 140 | 28 | 139 | 3.99e-21 | 89.4 |
| Msa0629080 | MtrunA17_Chr4g0040551 | 44.966 | 149 | 80 | 1 | 199 | 347 | 39 | 185 | 1.56e-40 | 140 |
| Msa0629080 | MtrunA17_Chr4g0040551 | 45.455 | 99 | 54 | 0 | 43 | 141 | 39 | 137 | 8.86e-24 | 96.7 |
| Msa0629080 | MtrunA17_Chr5g0446751 | 40.394 | 203 | 96 | 5 | 155 | 347 | 2 | 189 | 2.45e-40 | 140 |
| Msa0629080 | MtrunA17_Chr5g0446751 | 39.806 | 103 | 56 | 2 | 44 | 140 | 38 | 140 | 3.17e-18 | 81.6 |
| Msa0629080 | MtrunA17_Chr3g0090231 | 45.638 | 149 | 79 | 1 | 199 | 347 | 39 | 185 | 3.33e-40 | 140 |
| Msa0629080 | MtrunA17_Chr3g0090231 | 47.475 | 99 | 52 | 0 | 43 | 141 | 39 | 137 | 7.14e-25 | 99.8 |
| Msa0629080 | MtrunA17_Chr3g0085321 | 38.624 | 189 | 106 | 3 | 161 | 346 | 7 | 188 | 2.49e-38 | 135 |
| Msa0629080 | MtrunA17_Chr3g0085321 | 39.716 | 141 | 74 | 3 | 4 | 140 | 7 | 140 | 5.20e-25 | 100 |
| Msa0629080 | MtrunA17_Chr3g0136631 | 44.025 | 159 | 86 | 2 | 192 | 347 | 31 | 189 | 5.45e-38 | 134 |
| Msa0629080 | MtrunA17_Chr3g0136631 | 38.194 | 144 | 76 | 3 | 2 | 140 | 5 | 140 | 9.94e-23 | 94.0 |
| Msa0629080 | MtrunA17_Chr3g0085301 | 38.579 | 197 | 112 | 3 | 151 | 346 | 5 | 193 | 1.63e-37 | 133 |
| Msa0629080 | MtrunA17_Chr3g0085301 | 39.855 | 138 | 76 | 2 | 3 | 140 | 15 | 145 | 1.16e-24 | 99.4 |
| Msa0629080 | MtrunA17_Chr4g0068381 | 37.324 | 142 | 89 | 0 | 206 | 347 | 39 | 180 | 3.52e-26 | 102 |
| Msa0629080 | MtrunA17_Chr4g0068381 | 35.870 | 92 | 57 | 1 | 50 | 139 | 39 | 130 | 1.21e-12 | 65.9 |
| Msa0629080 | MtrunA17_Chr4g0068391 | 35.915 | 142 | 91 | 0 | 206 | 347 | 39 | 180 | 2.90e-23 | 95.1 |
| Msa0629080 | MtrunA17_Chr4g0024961 | 31.469 | 143 | 98 | 0 | 200 | 342 | 31 | 173 | 9.52e-18 | 80.1 |
| Msa0629080 | MtrunA17_Chr4g0024951 | 33.071 | 127 | 85 | 0 | 196 | 322 | 27 | 153 | 1.51e-17 | 79.3 |
| Msa0629080 | MtrunA17_Chr4g0005061 | 69.048 | 42 | 9 | 1 | 306 | 347 | 189 | 226 | 1.49e-13 | 69.3 |
| Msa0629080 | MtrunA17_Chr4g0005061 | 72.500 | 40 | 11 | 0 | 228 | 267 | 2 | 41 | 6.80e-12 | 64.3 |
| Msa0629080 | MtrunA17_Chr8g0387701 | 33.088 | 136 | 82 | 3 | 199 | 326 | 34 | 168 | 1.41e-12 | 65.9 |
| Msa0629080 | MtrunA17_Chr1g0212861 | 34.959 | 123 | 67 | 5 | 234 | 346 | 234 | 353 | 1.42e-11 | 65.1 |
| Msa0629080 | MtrunA17_Chr8g0387711 | 34.965 | 143 | 71 | 6 | 206 | 335 | 37 | 170 | 2.84e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629080 | AT1G55210.1 | 60.638 | 188 | 70 | 2 | 160 | 347 | 4 | 187 | 3.88e-77 | 235 |
| Msa0629080 | AT1G55210.1 | 56.738 | 141 | 58 | 2 | 3 | 143 | 4 | 141 | 3.82e-47 | 158 |
| Msa0629080 | AT1G55210.2 | 60.638 | 188 | 70 | 2 | 160 | 347 | 4 | 187 | 3.88e-77 | 235 |
| Msa0629080 | AT1G55210.2 | 56.738 | 141 | 58 | 2 | 3 | 143 | 4 | 141 | 3.82e-47 | 158 |
| Msa0629080 | AT1G58170.1 | 66.447 | 152 | 51 | 0 | 196 | 347 | 34 | 185 | 4.50e-72 | 222 |
| Msa0629080 | AT1G58170.1 | 51.408 | 142 | 56 | 3 | 6 | 143 | 7 | 139 | 3.22e-41 | 143 |
| Msa0629080 | AT5G49040.1 | 54.787 | 188 | 85 | 0 | 160 | 347 | 4 | 191 | 1.16e-71 | 221 |
| Msa0629080 | AT5G49040.1 | 48.276 | 145 | 73 | 1 | 1 | 143 | 1 | 145 | 7.78e-43 | 147 |
| Msa0629080 | AT3G13650.1 | 51.337 | 187 | 87 | 2 | 161 | 347 | 4 | 186 | 2.87e-64 | 202 |
| Msa0629080 | AT3G13650.1 | 47.183 | 142 | 72 | 3 | 1 | 142 | 1 | 139 | 6.76e-35 | 126 |
| Msa0629080 | AT5G49030.3 | 55.294 | 170 | 71 | 1 | 163 | 332 | 12 | 176 | 1.80e-55 | 196 |
| Msa0629080 | AT5G49030.3 | 49.645 | 141 | 69 | 1 | 1 | 139 | 1 | 141 | 1.28e-37 | 144 |
| Msa0629080 | AT3G13662.1 | 55.705 | 149 | 63 | 1 | 186 | 334 | 27 | 172 | 1.58e-51 | 169 |
| Msa0629080 | AT3G13662.1 | 51.818 | 110 | 52 | 1 | 30 | 139 | 27 | 135 | 1.70e-32 | 119 |
| Msa0629080 | AT1G65870.1 | 51.656 | 151 | 73 | 0 | 196 | 346 | 39 | 189 | 2.33e-50 | 166 |
| Msa0629080 | AT1G65870.1 | 48.113 | 106 | 53 | 1 | 40 | 143 | 39 | 144 | 4.53e-28 | 108 |
| Msa0629080 | AT2G21100.1 | 51.007 | 149 | 73 | 0 | 198 | 346 | 39 | 187 | 2.41e-50 | 166 |
| Msa0629080 | AT2G21100.1 | 46.154 | 104 | 54 | 1 | 42 | 143 | 39 | 142 | 2.13e-25 | 101 |
| Msa0629080 | AT2G21100.2 | 51.007 | 149 | 73 | 0 | 198 | 346 | 39 | 187 | 2.41e-50 | 166 |
| Msa0629080 | AT2G21100.2 | 46.154 | 104 | 54 | 1 | 42 | 143 | 39 | 142 | 2.13e-25 | 101 |
| Msa0629080 | AT3G13660.1 | 63.559 | 118 | 43 | 0 | 230 | 347 | 8 | 125 | 1.31e-47 | 157 |
| Msa0629080 | AT3G13660.1 | 61.765 | 68 | 24 | 1 | 74 | 139 | 8 | 75 | 3.06e-20 | 85.5 |
| Msa0629080 | AT5G42500.1 | 48.667 | 150 | 75 | 1 | 197 | 346 | 38 | 185 | 3.63e-46 | 155 |
| Msa0629080 | AT5G42500.1 | 43.564 | 101 | 55 | 1 | 41 | 139 | 38 | 138 | 2.42e-22 | 93.2 |
| Msa0629080 | AT1G22900.1 | 49.669 | 151 | 74 | 1 | 196 | 346 | 45 | 193 | 5.14e-46 | 155 |
| Msa0629080 | AT1G22900.1 | 50.476 | 105 | 50 | 1 | 40 | 142 | 45 | 149 | 4.26e-29 | 111 |
| Msa0629080 | AT5G42510.1 | 48.000 | 150 | 76 | 1 | 197 | 346 | 35 | 182 | 7.87e-45 | 152 |
| Msa0629080 | AT5G42510.1 | 44.554 | 101 | 54 | 1 | 41 | 139 | 35 | 135 | 3.18e-25 | 100 |
| Msa0629080 | AT3G58090.1 | 50.909 | 110 | 54 | 0 | 237 | 346 | 162 | 271 | 3.13e-34 | 127 |
| Msa0629080 | AT3G58090.1 | 50.000 | 62 | 31 | 0 | 79 | 140 | 162 | 223 | 8.90e-15 | 73.9 |
| Msa0629080 | AT4G38700.1 | 37.186 | 199 | 109 | 6 | 155 | 347 | 2 | 190 | 7.60e-34 | 124 |
| Msa0629080 | AT4G38700.1 | 43.925 | 107 | 50 | 3 | 42 | 140 | 35 | 139 | 1.45e-19 | 85.9 |
| Msa0629080 | AT2G21110.1 | 36.471 | 170 | 98 | 2 | 182 | 347 | 23 | 186 | 3.55e-32 | 119 |
| Msa0629080 | AT2G21110.1 | 31.667 | 120 | 70 | 3 | 26 | 139 | 23 | 136 | 8.75e-14 | 69.3 |
| Msa0629080 | AT4G23690.1 | 32.576 | 132 | 82 | 3 | 195 | 322 | 34 | 162 | 3.70e-12 | 64.7 |
| Msa0629080 | AT4G11210.1 | 27.222 | 180 | 109 | 5 | 156 | 331 | 6 | 167 | 6.91e-12 | 63.9 |
Find 61 sgRNAs with CRISPR-Local
Find 369 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCGGGTCCTAAAGTTAA+AGG | 0.186513 | 4_3:-9928606 | None:intergenic |
| AGTTCTGGTCCTAAAGTTAA+AGG | 0.191161 | 4_3:-9923066 | None:intergenic |
| ATTGACAACCCTTTAACTTT+AGG | 0.265955 | 4_3:+9923057 | Msa0629080:CDS |
| ATTGACAACCCTTTAACTTT+AGG | 0.265955 | 4_3:+9928597 | Msa0629080:CDS |
| TTCATTGAAGGAAAGTATAA+TGG | 0.275934 | 4_3:+9923177 | Msa0629080:CDS |
| TTCATTGAAGGAAAGTATAA+TGG | 0.275934 | 4_3:+9928717 | Msa0629080:CDS |
| TCTGCTTCACTGGAAGAAAT+AGG | 0.308101 | 4_3:+9928669 | Msa0629080:CDS |
| GTAAATTCAACCACTGCTTT+TGG | 0.313845 | 4_3:+9923021 | Msa0629080:CDS |
| TAAGTCATTTCAAATTATAT+TGG | 0.313865 | 4_3:+9928478 | Msa0629080:CDS |
| CCAATAGATCGCAAGTTGTT+AGG | 0.329140 | 4_3:+9922895 | Msa0629080:CDS |
| CCTAACAACTTGCGATCTAT+TGG | 0.333660 | 4_3:-9922895 | None:intergenic |
| CCTAACAACTTGCGATCTAT+TGG | 0.340385 | 4_3:-9928435 | None:intergenic |
| AACAAGTTTAGAACTCAATT+CGG | 0.349877 | 4_3:-9928622 | None:intergenic |
| TAAGTCATTTCAGATTCTAT+TGG | 0.351815 | 4_3:+9922938 | Msa0629080:CDS |
| GAGGAATCCTGCTATTAATA+TGG | 0.364770 | 4_3:+9923221 | Msa0629080:CDS |
| GGGAGTACTATTACTATCTT+GGG | 0.365410 | 4_3:+9928738 | Msa0629080:CDS |
| TGGGAGTACTATTACTATCT+TGG | 0.368563 | 4_3:+9928737 | Msa0629080:CDS |
| GAGGAATCATGCTCGTAATA+AGG | 0.371557 | 4_3:+9928761 | Msa0629080:CDS |
| ATGCCTGTTGTTGGTGGTAG+TGG | 0.375988 | 4_3:+9928792 | Msa0629080:CDS |
| GAACTGAGTTCTAAACTTGT+TGG | 0.385159 | 4_3:+9923084 | Msa0629080:CDS |
| CCAATAGATCGCAAGTTGTT+AGG | 0.388446 | 4_3:+9928435 | Msa0629080:CDS |
| GAACAAAGTGAGGAAATGTT+TGG | 0.395828 | 4_3:-9928337 | None:intergenic |
| GGGAGTACTCTTACTATTGT+AGG | 0.399599 | 4_3:+9923198 | Msa0629080:CDS |
| CATTGGATTGATGCCAAAGC+TGG | 0.410820 | 4_3:+9928855 | Msa0629080:CDS |
| GTTCTGGTCCTAAAGTTAAA+GGG | 0.426776 | 4_3:-9923065 | None:intergenic |
| ACAAGTTTAGAACTCAGTTC+TGG | 0.427865 | 4_3:-9923081 | None:intergenic |
| TATTGGCATGACATAGTTAG+TGG | 0.428044 | 4_3:+9928495 | Msa0629080:CDS |
| GGAACAATTGCAACCGAAGT+TGG | 0.428664 | 4_3:-9922985 | None:intergenic |
| TCATTGAAGGAAAGTATAAT+GGG | 0.435892 | 4_3:+9923178 | Msa0629080:CDS |
| TCATTGAAGGAAAGTATAAT+GGG | 0.435892 | 4_3:+9928718 | Msa0629080:CDS |
| ATTCGGGTCCTAAAGTTAAA+GGG | 0.441542 | 4_3:-9928605 | None:intergenic |
| ATCATGCTCGTAATAAGGTT+AGG | 0.442060 | 4_3:+9928766 | Msa0629080:CDS |
| ATTCTATGCATCTGCTTCAC+TGG | 0.446690 | 4_3:+9928659 | Msa0629080:CDS |
| AACACAAGCATCCCCAGCTT+TGG | 0.447090 | 4_3:-9928868 | None:intergenic |
| GGAACAACTGCAACCGAAGT+TGG | 0.457572 | 4_3:-9928525 | None:intergenic |
| ATGCTCAAGCTAGTACTCAT+TGG | 0.460522 | 4_3:+9928838 | Msa0629080:CDS |
| GAATTGAGTTCTAAACTTGT+TGG | 0.460969 | 4_3:+9928624 | Msa0629080:CDS |
| GTGTGTTACAAGAGATGAGA+AGG | 0.467937 | 4_3:-9928365 | None:intergenic |
| AAACTTGTTGGTAGAGCTCA+AGG | 0.477359 | 4_3:+9928636 | Msa0629080:CDS |
| ACAAGTTTAGAACTCAATTC+GGG | 0.477778 | 4_3:-9928621 | None:intergenic |
| AAACTTGTTGGAAGAGCTCA+AGG | 0.479877 | 4_3:+9923096 | Msa0629080:CDS |
| ATTCTATGCATCTGCATCAC+AGG | 0.484694 | 4_3:+9923119 | Msa0629080:CDS |
| GTTAGGGAGATGCCTGTTGT+TGG | 0.505285 | 4_3:+9928783 | Msa0629080:CDS |
| TCATGCTCGTAATAAGGTTA+GGG | 0.511498 | 4_3:+9928767 | Msa0629080:CDS |
| AGTCCACTACCACCAACAAC+AGG | 0.512977 | 4_3:-9928795 | None:intergenic |
| CACACTCACTTCTTCAACAT+CGG | 0.514156 | 4_3:+9928383 | Msa0629080:CDS |
| ATTGGATTGATGCCAAAGCT+GGG | 0.519261 | 4_3:+9928856 | Msa0629080:CDS |
| AGGGAGATGCCTGTTGTTGG+TGG | 0.521357 | 4_3:+9928786 | Msa0629080:CDS |
| GGAGTACTCTTACTATTGTA+GGG | 0.530187 | 4_3:+9923199 | Msa0629080:CDS |
| GAAGGAAGAAGAACAAAGTG+AGG | 0.531404 | 4_3:-9928347 | None:intergenic |
| TATTGGCATGATATCTTGAG+TGG | 0.535975 | 4_3:+9922955 | Msa0629080:CDS |
| TCCCTAACCATATTAATAGC+AGG | 0.536411 | 4_3:-9923228 | None:intergenic |
| TCTGCATCACAGGAAGAACT+AGG | 0.571860 | 4_3:+9923129 | Msa0629080:CDS |
| GTTGTTAGGCCTAAACAAGA+AGG | 0.591926 | 4_3:+9928449 | Msa0629080:CDS |
| GAAATGTTTGGAAGACATTG+TGG | 0.597510 | 4_3:-9928325 | None:intergenic |
| GTGTGTTGCAAGATATGAGA+AGG | 0.624292 | 4_3:-9922822 | None:intergenic |
| GTTGACTAAACCAAAAGCAG+TGG | 0.670239 | 4_3:-9923031 | None:intergenic |
| GTACTATTACTATCTTGGGG+AGG | 0.673978 | 4_3:+9928742 | Msa0629080:CDS |
| GTACTCTTACTATTGTAGGG+AGG | 0.687219 | 4_3:+9923202 | Msa0629080:CDS |
| GGAGTACTATTACTATCTTG+GGG | 0.700411 | 4_3:+9928739 | Msa0629080:CDS |
| TTGGATTGATGCCAAAGCTG+GGG | 0.710618 | 4_3:+9928857 | Msa0629080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATCTATTTTTAACAT+TGG | + | chr4_3:9924288-9924307 | Msa0629080:intron | 10.0% |
| !! | TAAAAAAATATAATCAAAGT+TGG | + | chr4_3:9925932-9925951 | Msa0629080:intron | 10.0% |
| !! | TAAAAAGTTAACATAAAAAA+TGG | + | chr4_3:9926126-9926145 | Msa0629080:intron | 10.0% |
| !! | AATATATCTAATTCAAAAAT+AGG | - | chr4_3:9927179-9927198 | None:intergenic | 10.0% |
| !!! | AAAAGATAAATAATGAATTT+TGG | + | chr4_3:9927705-9927724 | Msa0629080:intron | 10.0% |
| !!! | AAAGATAAATAATGAATTTT+GGG | + | chr4_3:9927706-9927725 | Msa0629080:intron | 10.0% |
| !!! | TTTTCTAATTCTATTTTTTT+AGG | - | chr4_3:9928141-9928160 | None:intergenic | 10.0% |
| !! | ATTTAAAGAGATATTATTCA+AGG | + | chr4_3:9923626-9923645 | Msa0629080:intron | 15.0% |
| !! | ATAGAAAAAATATGTAACTA+GGG | + | chr4_3:9923671-9923690 | Msa0629080:intron | 15.0% |
| !!! | CCTTTTTATAATAATTACAT+CGG | - | chr4_3:9924140-9924159 | None:intergenic | 15.0% |
| !! | CAATATAGAAATATTATATC+AGG | + | chr4_3:9924206-9924225 | Msa0629080:intron | 15.0% |
| !! | CTCTACAAATTTAAATTTAT+TGG | - | chr4_3:9926277-9926296 | None:intergenic | 15.0% |
| !!! | AAATGTCTCTAAAAAAAAAT+AGG | + | chr4_3:9927214-9927233 | Msa0629080:intron | 15.0% |
| !!! | AATGTCTCTAAAAAAAAATA+GGG | + | chr4_3:9927215-9927234 | Msa0629080:intron | 15.0% |
| !!! | AGTGTTTTTATTAAAATAGA+GGG | - | chr4_3:9927289-9927308 | None:intergenic | 15.0% |
| !! | GAATTGTTAATAAAGAAATT+AGG | - | chr4_3:9927361-9927380 | None:intergenic | 15.0% |
| !!! | TTTTTCAACATTTTGATTTA+TGG | + | chr4_3:9927477-9927496 | Msa0629080:intron | 15.0% |
| !!! | ATTTTGGGAATAATAAATTT+TGG | + | chr4_3:9927721-9927740 | Msa0629080:intron | 15.0% |
| !! | TCAATTATAGAAATAAGTAA+GGG | + | chr4_3:9928039-9928058 | Msa0629080:intron | 15.0% |
| !! | TAAGTCATTTCAAATTATAT+TGG | + | chr4_3:9928478-9928497 | Msa0629080:CDS | 15.0% |
| !!! | TCGAACAACAATTTTTTTAA+TGG | - | chr4_3:9923407-9923426 | None:intergenic | 20.0% |
| !! | GCTAAATAATTCATTCAAAT+TGG | - | chr4_3:9923532-9923551 | None:intergenic | 20.0% |
| !!! | AAACTTAACTTTTTTTGAAG+AGG | - | chr4_3:9923554-9923573 | None:intergenic | 20.0% |
| !! | CATAGAAAAAATATGTAACT+AGG | + | chr4_3:9923670-9923689 | Msa0629080:intron | 20.0% |
| !! | TGCAAACAAAAACAAAATTA+GGG | - | chr4_3:9923710-9923729 | None:intergenic | 20.0% |
| !! | TTGCAAACAAAAACAAAATT+AGG | - | chr4_3:9923711-9923730 | None:intergenic | 20.0% |
| !!! | TATGTTTTTTCTCATTGTTA+TGG | + | chr4_3:9924078-9924097 | Msa0629080:intron | 20.0% |
| !! | CCGATGTAATTATTATAAAA+AGG | + | chr4_3:9924137-9924156 | Msa0629080:intron | 20.0% |
| !!! | TCTTTCTATTTTTTAAGCAA+TGG | - | chr4_3:9924375-9924394 | None:intergenic | 20.0% |
| !!! | GCTCTTTTTTTTTTTTTTGA+AGG | - | chr4_3:9924426-9924445 | None:intergenic | 20.0% |
| !!! | ATTACACTTTTTTAGGAAAT+GGG | - | chr4_3:9924710-9924729 | None:intergenic | 20.0% |
| !!! | AATTACACTTTTTTAGGAAA+TGG | - | chr4_3:9924711-9924730 | None:intergenic | 20.0% |
| !!! | TTCCTAAAAAAGTGTAATTT+TGG | + | chr4_3:9924712-9924731 | Msa0629080:intron | 20.0% |
| !!! | TAATTTTGGAGATCTATAAA+AGG | + | chr4_3:9924726-9924745 | Msa0629080:intron | 20.0% |
| !!! | AATTTTGGAGATCTATAAAA+GGG | + | chr4_3:9924727-9924746 | Msa0629080:intron | 20.0% |
| !!! | TACTAACGATATCTAAAATT+GGG | - | chr4_3:9925432-9925451 | None:intergenic | 20.0% |
| !!! | ATACTAACGATATCTAAAAT+TGG | - | chr4_3:9925433-9925452 | None:intergenic | 20.0% |
| !!! | TTTTGCAAATAGATGATTAT+AGG | - | chr4_3:9925881-9925900 | None:intergenic | 20.0% |
| !! | AATTTAAATTTGTAGAGCAA+TGG | + | chr4_3:9926280-9926299 | Msa0629080:intron | 20.0% |
| !! | ATTTAAATTTGTAGAGCAAT+GGG | + | chr4_3:9926281-9926300 | Msa0629080:intron | 20.0% |
| !!! | TGTTTTTATTAAAATAGAGG+GGG | - | chr4_3:9927287-9927306 | None:intergenic | 20.0% |
| !!! | GTGTTTTTATTAAAATAGAG+GGG | - | chr4_3:9927288-9927307 | None:intergenic | 20.0% |
| !!! | GAGTGTTTTTATTAAAATAG+AGG | - | chr4_3:9927290-9927309 | None:intergenic | 20.0% |
| !!! | TTTCATATATCTGATTTGTA+AGG | + | chr4_3:9927578-9927597 | Msa0629080:intron | 20.0% |
| !! | CGTATATATACATGTTATTA+TGG | - | chr4_3:9927779-9927798 | None:intergenic | 20.0% |
| !! | ACTAACAATGTTAACTTATA+AGG | + | chr4_3:9928006-9928025 | Msa0629080:intron | 20.0% |
| !! | CTAACAATGTTAACTTATAA+GGG | + | chr4_3:9928007-9928026 | Msa0629080:intron | 20.0% |
| !! | GTCAATTATAGAAATAAGTA+AGG | + | chr4_3:9928038-9928057 | Msa0629080:intron | 20.0% |
| ! | TAAGTCATTTCAGATTCTAT+TGG | + | chr4_3:9922938-9922957 | Msa0629080:CDS | 25.0% |
| !!! | GTTGAATTTACTTTTGATGA+TGG | - | chr4_3:9923012-9923031 | None:intergenic | 25.0% |
| !! | ATGAATTTTGCTTTCATTGA+AGG | + | chr4_3:9923165-9923184 | Msa0629080:CDS | 25.0% |
| !! | TTCATTGAAGGAAAGTATAA+TGG | + | chr4_3:9923177-9923196 | Msa0629080:CDS | 25.0% |
| !! | TCATTGAAGGAAAGTATAAT+GGG | + | chr4_3:9923178-9923197 | Msa0629080:CDS | 25.0% |
| !! | ATTGGATTGATTTCAAAACT+GGG | + | chr4_3:9923316-9923335 | Msa0629080:intron | 25.0% |
| ! | ACAATCAATAGTGAAAAACA+TGG | - | chr4_3:9923365-9923384 | None:intergenic | 25.0% |
| ! | TTTGCAAACGTGATATATTA+TGG | + | chr4_3:9923724-9923743 | Msa0629080:intron | 25.0% |
| ! | TTGCAAACGTGATATATTAT+GGG | + | chr4_3:9923725-9923744 | Msa0629080:intron | 25.0% |
| !!! | TTTTTTGAAGGATTGTTGTT+TGG | - | chr4_3:9924414-9924433 | None:intergenic | 25.0% |
| ! | TCGTAGACATATATAGATAT+AGG | - | chr4_3:9924448-9924467 | None:intergenic | 25.0% |
| ! | CTACGATATTTAATGATACA+TGG | + | chr4_3:9924462-9924481 | Msa0629080:intron | 25.0% |
| ! | TATTTAATGATACATGGAGT+TGG | + | chr4_3:9924468-9924487 | Msa0629080:intron | 25.0% |
| ! | TGTAAGATTTCATATGTCAT+TGG | - | chr4_3:9924515-9924534 | None:intergenic | 25.0% |
| ! | TGAAACACCAATGTTTAATT+CGG | + | chr4_3:9924554-9924573 | Msa0629080:intron | 25.0% |
| !!! | CTCCAAAATTACACTTTTTT+AGG | - | chr4_3:9924717-9924736 | None:intergenic | 25.0% |
| !!! | ATTTTGGAGATCTATAAAAG+GGG | + | chr4_3:9924728-9924747 | Msa0629080:intron | 25.0% |
| ! | AGTTGATCAATTGTATTCAA+AGG | - | chr4_3:9924984-9925003 | None:intergenic | 25.0% |
| !!! | TTGATCAACTTAGCTTTATT+CGG | + | chr4_3:9924994-9925013 | Msa0629080:intron | 25.0% |
| !!! | GAATGTTCATAAGTTGATTT+AGG | + | chr4_3:9925052-9925071 | Msa0629080:intron | 25.0% |
| !! | GACATAATCACATTTCTTTT+TGG | + | chr4_3:9925353-9925372 | Msa0629080:intron | 25.0% |
| !! | ACTAACGATATCTAAAATTG+GGG | - | chr4_3:9925431-9925450 | None:intergenic | 25.0% |
| ! | AGTAAAAGACGAAAGTAATA+AGG | + | chr4_3:9925715-9925734 | Msa0629080:intron | 25.0% |
| ! | GTAAAAGACGAAAGTAATAA+GGG | + | chr4_3:9925716-9925735 | Msa0629080:intron | 25.0% |
| ! | AACAATCAATGTTAGTTGTT+AGG | - | chr4_3:9925766-9925785 | None:intergenic | 25.0% |
| !!! | CTAAATCACTCATTTTAGAA+TGG | - | chr4_3:9925815-9925834 | None:intergenic | 25.0% |
| !!! | CTTTGTTTGTTTTAATAGCT+GGG | - | chr4_3:9926015-9926034 | None:intergenic | 25.0% |
| !!! | TCTTTGTTTGTTTTAATAGC+TGG | - | chr4_3:9926016-9926035 | None:intergenic | 25.0% |
| !! | TTAAAACAAACAAAGAGTAC+AGG | + | chr4_3:9926020-9926039 | Msa0629080:intron | 25.0% |
| ! | CAAATTCACAACAATATTTC+AGG | - | chr4_3:9926234-9926253 | None:intergenic | 25.0% |
| !! | GCTTAAAGTTACTTTGATAT+TGG | - | chr4_3:9926317-9926336 | None:intergenic | 25.0% |
| ! | TTAACGAGTTCTTTATAAAG+AGG | + | chr4_3:9926497-9926516 | Msa0629080:intron | 25.0% |
| !!! | TAGAAATTAGGTTTTGTTCT+TGG | - | chr4_3:9926561-9926580 | None:intergenic | 25.0% |
| !! | AATCAAAGGAGGTAATTTTA+GGG | - | chr4_3:9926692-9926711 | None:intergenic | 25.0% |
| !! | AAATCAAAGGAGGTAATTTT+AGG | - | chr4_3:9926693-9926712 | None:intergenic | 25.0% |
| !! | ACACCAACTAATTTTTATGA+AGG | + | chr4_3:9926937-9926956 | Msa0629080:intron | 25.0% |
| ! | ACACCTTCATAAAAATTAGT+TGG | - | chr4_3:9926943-9926962 | None:intergenic | 25.0% |
| ! | GCAAAGTTATAACTAAAAAG+TGG | + | chr4_3:9926969-9926988 | Msa0629080:intron | 25.0% |
| ! | TAGGAAAATTGAAGTCTAAA+CGG | - | chr4_3:9927342-9927361 | None:intergenic | 25.0% |
| !! | ATATCTGATTTGTAAGGAAT+TGG | + | chr4_3:9927584-9927603 | Msa0629080:intron | 25.0% |
| ! | ATACATGTTATTATGGATGA+AGG | - | chr4_3:9927772-9927791 | None:intergenic | 25.0% |
| !! | TGTGGATTTTATGTTTGAAA+AGG | - | chr4_3:9927863-9927882 | None:intergenic | 25.0% |
| !! | TCCACAATCTAATTTTATGT+AGG | + | chr4_3:9927877-9927896 | Msa0629080:intron | 25.0% |
| ! | TCCTACATAAAATTAGATTG+TGG | - | chr4_3:9927881-9927900 | None:intergenic | 25.0% |
| ! | ATTATAGAAATAAGTAAGGG+AGG | + | chr4_3:9928042-9928061 | Msa0629080:intron | 25.0% |
| !!! | AGTGTTAGTTTTTAAACTAG+AGG | + | chr4_3:9928067-9928086 | Msa0629080:intron | 25.0% |
| !!! | GTGTTAGTTTTTAAACTAGA+GGG | + | chr4_3:9928068-9928087 | Msa0629080:intron | 25.0% |
| !!! | TGTTAGTTTTTAAACTAGAG+GGG | + | chr4_3:9928069-9928088 | Msa0629080:intron | 25.0% |
| ! | TGATGAACAAATATAAAGAG+AGG | - | chr4_3:9928212-9928231 | None:intergenic | 25.0% |
| !! | AAAATGTTGATATGCTACTT+TGG | - | chr4_3:9928303-9928322 | None:intergenic | 25.0% |
| !! | AACAAGTTTAGAACTCAATT+CGG | - | chr4_3:9928625-9928644 | None:intergenic | 25.0% |
| !! | ATGAATTTTGCTTTCATTGA+AGG | + | chr4_3:9923165-9923184 | Msa0629080:CDS | 25.0% |
| !! | TTCATTGAAGGAAAGTATAA+TGG | + | chr4_3:9923177-9923196 | Msa0629080:CDS | 25.0% |
| !! | TCATTGAAGGAAAGTATAAT+GGG | + | chr4_3:9923178-9923197 | Msa0629080:CDS | 25.0% |
| !!! | GAATTTACTTTTGATGATGG+TGG | - | chr4_3:9923009-9923028 | None:intergenic | 30.0% |
| ! | ATTGACAACCCTTTAACTTT+AGG | + | chr4_3:9923057-9923076 | Msa0629080:CDS | 30.0% |
| ATCCTGCTATTAATATGGTT+AGG | + | chr4_3:9923226-9923245 | Msa0629080:intron | 30.0% | |
| TCCTGCTATTAATATGGTTA+GGG | + | chr4_3:9923227-9923246 | Msa0629080:intron | 30.0% | |
| ! | CATTGGATTGATTTCAAAAC+TGG | + | chr4_3:9923315-9923334 | Msa0629080:intron | 30.0% |
| ! | TTGGATTGATTTCAAAACTG+GGG | + | chr4_3:9923317-9923336 | Msa0629080:intron | 30.0% |
| !!! | ATTTTAGAATCCACTTGTGT+TGG | + | chr4_3:9923436-9923455 | Msa0629080:intron | 30.0% |
| TGGTCGGTATTAATTTAGAA+AGG | - | chr4_3:9923874-9923893 | None:intergenic | 30.0% | |
| GAAAAAACATACTCCTACAT+AGG | - | chr4_3:9924069-9924088 | None:intergenic | 30.0% | |
| ! | GTGAAAAATGTAATTTTGCG+AGG | + | chr4_3:9924588-9924607 | Msa0629080:intron | 30.0% |
| !!! | GTACCTAGGTTTGTTTTAAT+AGG | + | chr4_3:9924922-9924941 | Msa0629080:intron | 30.0% |
| TGACCTATTAAAACAAACCT+AGG | - | chr4_3:9924928-9924947 | None:intergenic | 30.0% | |
| AAAGGCAACTTAACATACTA+GGG | - | chr4_3:9924966-9924985 | None:intergenic | 30.0% | |
| TTAGGTTTCGATGACTATTA+TGG | + | chr4_3:9925070-9925089 | Msa0629080:intron | 30.0% | |
| TAGGTTTCGATGACTATTAT+GGG | + | chr4_3:9925071-9925090 | Msa0629080:intron | 30.0% | |
| ATTAAGCACCAAGACATATT+GGG | + | chr4_3:9925234-9925253 | Msa0629080:intron | 30.0% | |
| TGAAATTGAAGCAATACTTG+TGG | + | chr4_3:9925469-9925488 | Msa0629080:intron | 30.0% | |
| AATCAATGTTAGTTGTTAGG+AGG | - | chr4_3:9925763-9925782 | None:intergenic | 30.0% | |
| !!! | AATCACTCATTTTAGAATGG+AGG | - | chr4_3:9925812-9925831 | None:intergenic | 30.0% |
| ! | TACAGGAATTTAACTTCTGA+AGG | + | chr4_3:9926037-9926056 | Msa0629080:intron | 30.0% |
| ! | ACAGGAATTTAACTTCTGAA+GGG | + | chr4_3:9926038-9926057 | Msa0629080:intron | 30.0% |
| ! | TCTTTTCCCTTTTCAGATTT+TGG | + | chr4_3:9926184-9926203 | Msa0629080:intron | 30.0% |
| ! | TTTTACAATGAACAGGATCA+TGG | - | chr4_3:9926211-9926230 | None:intergenic | 30.0% |
| !!! | TTTCAGGTTTTACAATGAAC+AGG | - | chr4_3:9926218-9926237 | None:intergenic | 30.0% |
| CAAACTGGGTAAATATTTCT+TGG | - | chr4_3:9926427-9926446 | None:intergenic | 30.0% | |
| AGAACTCGTTAATAGTTGAT+TGG | - | chr4_3:9926489-9926508 | None:intergenic | 30.0% | |
| TTGGGAAAAAGGTAGAAATT+AGG | - | chr4_3:9926573-9926592 | None:intergenic | 30.0% | |
| ! | AGACAAACTCTAGAAATCAA+AGG | - | chr4_3:9926706-9926725 | None:intergenic | 30.0% |
| CTTTAGATCAATCTTTAGCA+TGG | - | chr4_3:9926765-9926784 | None:intergenic | 30.0% | |
| CATGCTAAAGATTGATCTAA+AGG | + | chr4_3:9926763-9926782 | Msa0629080:intron | 30.0% | |
| AAAGTGGAAATCACACATTA+AGG | + | chr4_3:9926985-9927004 | Msa0629080:intron | 30.0% | |
| ATTGCTAAAAAACACCTTCA+TGG | + | chr4_3:9927013-9927032 | Msa0629080:intron | 30.0% | |
| TTGCTAAAAAACACCTTCAT+GGG | + | chr4_3:9927014-9927033 | Msa0629080:intron | 30.0% | |
| ! | TGTTGTTTAAGAAAACCTCA+GGG | - | chr4_3:9927258-9927277 | None:intergenic | 30.0% |
| TTAACAGTTAGTTCATAGAG+GGG | - | chr4_3:9927317-9927336 | None:intergenic | 30.0% | |
| GTTAACAGTTAGTTCATAGA+GGG | - | chr4_3:9927318-9927337 | None:intergenic | 30.0% | |
| TGTTAACAGTTAGTTCATAG+AGG | - | chr4_3:9927319-9927338 | None:intergenic | 30.0% | |
| AGGAATTGGTTACTGATAAT+TGG | + | chr4_3:9927598-9927617 | Msa0629080:intron | 30.0% | |
| GGAATTGGTTACTGATAATT+GGG | + | chr4_3:9927599-9927618 | Msa0629080:intron | 30.0% | |
| GAATTGGTTACTGATAATTG+GGG | + | chr4_3:9927600-9927619 | Msa0629080:intron | 30.0% | |
| TAACGGAAGTTTGAATAAGT+CGG | - | chr4_3:9927979-9927998 | None:intergenic | 30.0% | |
| ! | CATTGTTAGTCTCTTCTTAA+CGG | - | chr4_3:9927996-9928015 | None:intergenic | 30.0% |
| !!! | GTTAGTTTTTAAACTAGAGG+GGG | + | chr4_3:9928070-9928089 | Msa0629080:intron | 30.0% |
| ! | TGTTATTTAAGCAAACCTCA+GGG | + | chr4_3:9928099-9928118 | Msa0629080:intron | 30.0% |
| AGTGAACGAAAAAGGAAAAA+AGG | - | chr4_3:9928187-9928206 | None:intergenic | 30.0% | |
| AATGAAGTGAAGTGAAATGA+AGG | - | chr4_3:9928235-9928254 | None:intergenic | 30.0% | |
| !! | TTAGCTTTTCCTTCTTGTTT+AGG | - | chr4_3:9928461-9928480 | None:intergenic | 30.0% |
| TAGTGGAAAAAATCCAACTT+CGG | + | chr4_3:9928512-9928531 | Msa0629080:CDS | 30.0% | |
| !! | GTTGAGTTTACTTTTGATGA+TGG | - | chr4_3:9928552-9928571 | None:intergenic | 30.0% |
| !!! | GTAAACTCAACCACTTTTTT+TGG | + | chr4_3:9928561-9928580 | Msa0629080:CDS | 30.0% |
| ! | ATTGACAACCCTTTAACTTT+AGG | + | chr4_3:9923057-9923076 | Msa0629080:CDS | 30.0% |
| ! | ACAAGTTTAGAACTCAATTC+GGG | - | chr4_3:9928624-9928643 | None:intergenic | 30.0% |
| !! | GAATTGAGTTCTAAACTTGT+TGG | + | chr4_3:9928624-9928643 | Msa0629080:CDS | 30.0% |
| TATTGGCATGATATCTTGAG+TGG | + | chr4_3:9922955-9922974 | Msa0629080:CDS | 35.0% | |
| GAGTGGAAAAAATCCAACTT+CGG | + | chr4_3:9922972-9922991 | Msa0629080:CDS | 35.0% | |
| ! | GTAAATTCAACCACTGCTTT+TGG | + | chr4_3:9923021-9923040 | Msa0629080:CDS | 35.0% |
| GTTCTGGTCCTAAAGTTAAA+GGG | - | chr4_3:9923068-9923087 | None:intergenic | 35.0% | |
| ! | AGTTCTGGTCCTAAAGTTAA+AGG | - | chr4_3:9923069-9923088 | None:intergenic | 35.0% |
| ! | ACAAGTTTAGAACTCAGTTC+TGG | - | chr4_3:9923084-9923103 | None:intergenic | 35.0% |
| !! | GAACTGAGTTCTAAACTTGT+TGG | + | chr4_3:9923084-9923103 | Msa0629080:CDS | 35.0% |
| ! | GGAGTACTCTTACTATTGTA+GGG | + | chr4_3:9923199-9923218 | Msa0629080:CDS | 35.0% |
| GAGGAATCCTGCTATTAATA+TGG | + | chr4_3:9923221-9923240 | Msa0629080:CDS | 35.0% | |
| TCCCTAACCATATTAATAGC+AGG | - | chr4_3:9923231-9923250 | None:intergenic | 35.0% | |
| ATGCTCAAGCTAATACTCAT+TGG | + | chr4_3:9923298-9923317 | Msa0629080:intron | 35.0% | |
| !! | TGGTTTGGTGGTATTAACTT+TGG | + | chr4_3:9923456-9923475 | Msa0629080:intron | 35.0% |
| TCTAGAGAGAATTGAATCTG+AGG | - | chr4_3:9923508-9923527 | None:intergenic | 35.0% | |
| CGTGATATATTATGGGAGAA+TGG | + | chr4_3:9923732-9923751 | Msa0629080:intron | 35.0% | |
| TATGGGAGAATGGAATTACA+AGG | + | chr4_3:9923742-9923761 | Msa0629080:intron | 35.0% | |
| CACTTGTAATTCCATTCTCT+TGG | - | chr4_3:9923841-9923860 | None:intergenic | 35.0% | |
| !! | AAAAAAGCACCAAGTCTTTG+TGG | - | chr4_3:9923921-9923940 | None:intergenic | 35.0% |
| !! | AAGGAATAGGTTGGTTGAAT+GGG | - | chr4_3:9924046-9924065 | None:intergenic | 35.0% |
| AAACATACTCCTACATAGGA+AGG | - | chr4_3:9924065-9924084 | None:intergenic | 35.0% | |
| TTGTGAGCCGAATTAAACAT+TGG | - | chr4_3:9924564-9924583 | None:intergenic | 35.0% | |
| TGTTTAATTCGGCTCACAAA+AGG | + | chr4_3:9924565-9924584 | Msa0629080:intron | 35.0% | |
| GTTTAATTCGGCTCACAAAA+GGG | + | chr4_3:9924566-9924585 | Msa0629080:intron | 35.0% | |
| ! | AATGTAATTTTGCGAGGTAG+AGG | + | chr4_3:9924594-9924613 | Msa0629080:intron | 35.0% |
| !! | GTATTTGTCGACTCTTAACT+AGG | - | chr4_3:9924765-9924784 | None:intergenic | 35.0% |
| AGTCGACAAATACACATGAA+AGG | + | chr4_3:9924772-9924791 | Msa0629080:intron | 35.0% | |
| GTCGACAAATACACATGAAA+GGG | + | chr4_3:9924773-9924792 | Msa0629080:intron | 35.0% | |
| TCTTCTGATTATGAGTACCT+AGG | + | chr4_3:9924908-9924927 | Msa0629080:intron | 35.0% | |
| CAAAGGCAACTTAACATACT+AGG | - | chr4_3:9924967-9924986 | None:intergenic | 35.0% | |
| !!! | TGGTGCTTAATCAGCTTTTT+TGG | - | chr4_3:9925225-9925244 | None:intergenic | 35.0% |
| GATTAAGCACCAAGACATAT+TGG | + | chr4_3:9925233-9925252 | Msa0629080:intron | 35.0% | |
| TTCTTTGCTACTCGGTAATT+GGG | - | chr4_3:9925317-9925336 | None:intergenic | 35.0% | |
| TATTCGAGCTTGGCTTATTT+CGG | - | chr4_3:9925658-9925677 | None:intergenic | 35.0% | |
| CTAGGGTTAGAAAATGAGTT+GGG | - | chr4_3:9925683-9925702 | None:intergenic | 35.0% | |
| ACTAGGGTTAGAAAATGAGT+TGG | - | chr4_3:9925684-9925703 | None:intergenic | 35.0% | |
| ! | ACTCATTTTCTAACCCTAGT+TGG | + | chr4_3:9925684-9925703 | Msa0629080:intron | 35.0% |
| ! | TTACTCTTTTGCTCCAACTA+GGG | - | chr4_3:9925700-9925719 | None:intergenic | 35.0% |
| ! | TTTACTCTTTTGCTCCAACT+AGG | - | chr4_3:9925701-9925720 | None:intergenic | 35.0% |
| GGTTACGAAAACAATACACA+CGG | + | chr4_3:9925953-9925972 | Msa0629080:intron | 35.0% | |
| ! | CTGAAAAGGGAAAAGACTTT+TGG | - | chr4_3:9926180-9926199 | None:intergenic | 35.0% |
| CATGGACCAAAATCTGAAAA+GGG | - | chr4_3:9926193-9926212 | None:intergenic | 35.0% | |
| TCATGGACCAAAATCTGAAA+AGG | - | chr4_3:9926194-9926213 | None:intergenic | 35.0% | |
| ATCAATCTCTCCTTCATAGT+AGG | - | chr4_3:9926462-9926481 | None:intergenic | 35.0% | |
| !! | TCATTGAGTCATTGGTTCTT+GGG | - | chr4_3:9926602-9926621 | None:intergenic | 35.0% |
| !! | ATCATTGAGTCATTGGTTCT+TGG | - | chr4_3:9926603-9926622 | None:intergenic | 35.0% |
| GAGTGAAATCATTGAGTCAT+TGG | - | chr4_3:9926610-9926629 | None:intergenic | 35.0% | |
| GGAAACATTTGCAAACATCT+AGG | - | chr4_3:9926635-9926654 | None:intergenic | 35.0% | |
| !!! | AAGGAGGTAATTTTAGGGTT+GGG | - | chr4_3:9926687-9926706 | None:intergenic | 35.0% |
| !!! | AAAGGAGGTAATTTTAGGGT+TGG | - | chr4_3:9926688-9926707 | None:intergenic | 35.0% |
| ! | CAAACTCTAGAAATCAAAGG+AGG | - | chr4_3:9926703-9926722 | None:intergenic | 35.0% |
| GTTGTTTAAGAAAACCTCAG+GGG | - | chr4_3:9927257-9927276 | None:intergenic | 35.0% | |
| !! | GTGTTGTTTAAGAAAACCTC+AGG | - | chr4_3:9927259-9927278 | None:intergenic | 35.0% |
| ATTCTAATGTCCTTACACCA+TGG | + | chr4_3:9927377-9927396 | Msa0629080:intron | 35.0% | |
| CAATAATCAGAGTAAAGCAG+AGG | - | chr4_3:9927407-9927426 | None:intergenic | 35.0% | |
| GCGAGGATTATATAGTTTCA+TGG | + | chr4_3:9927549-9927568 | Msa0629080:intron | 35.0% | |
| TAATTGGGGATAATGTAACG+AGG | + | chr4_3:9927614-9927633 | Msa0629080:intron | 35.0% | |
| TTGCACCTATTGAACAATCT+TGG | + | chr4_3:9927663-9927682 | Msa0629080:intron | 35.0% | |
| CAAGACTGCAATTTGTAGTA+GGG | - | chr4_3:9927911-9927930 | None:intergenic | 35.0% | |
| TCAAGACTGCAATTTGTAGT+AGG | - | chr4_3:9927912-9927931 | None:intergenic | 35.0% | |
| AAGCATAAATAACTCCCTTG+AGG | - | chr4_3:9927936-9927955 | None:intergenic | 35.0% | |
| TTTATGCTTACCGTAGAAGA+AGG | + | chr4_3:9927947-9927966 | Msa0629080:intron | 35.0% | |
| !! | GTGTTATTTAAGCAAACCTC+AGG | + | chr4_3:9928098-9928117 | Msa0629080:intron | 35.0% |
| GTTATTTAAGCAAACCTCAG+GGG | + | chr4_3:9928100-9928119 | Msa0629080:intron | 35.0% | |
| CGAAAAAGGAAAAAAGGAGT+GGG | - | chr4_3:9928181-9928200 | None:intergenic | 35.0% | |
| ACGAAAAAGGAAAAAAGGAG+TGG | - | chr4_3:9928182-9928201 | None:intergenic | 35.0% | |
| GAGAGGAAGAATAATAATGG+AGG | - | chr4_3:9928261-9928280 | None:intergenic | 35.0% | |
| GAGGAGAGGAAGAATAATAA+TGG | - | chr4_3:9928264-9928283 | None:intergenic | 35.0% | |
| ! | CTTTGGAGATAGTAAAGTAG+TGG | - | chr4_3:9928286-9928305 | None:intergenic | 35.0% |
| GAAATGTTTGGAAGACATTG+TGG | - | chr4_3:9928328-9928347 | None:intergenic | 35.0% | |
| GAACAAAGTGAGGAAATGTT+TGG | - | chr4_3:9928340-9928359 | None:intergenic | 35.0% | |
| TATTGGCATGACATAGTTAG+TGG | + | chr4_3:9928495-9928514 | Msa0629080:CDS | 35.0% | |
| !!! | GAGTTTACTTTTGATGATGG+TGG | - | chr4_3:9928549-9928568 | None:intergenic | 35.0% |
| GCTGACTAAACCAAAAAAAG+TGG | - | chr4_3:9928574-9928593 | None:intergenic | 35.0% | |
| ATTCGGGTCCTAAAGTTAAA+GGG | - | chr4_3:9928608-9928627 | None:intergenic | 35.0% | |
| AATTCGGGTCCTAAAGTTAA+AGG | - | chr4_3:9928609-9928628 | None:intergenic | 35.0% | |
| !! | TGGGAGTACTATTACTATCT+TGG | + | chr4_3:9928737-9928756 | Msa0629080:CDS | 35.0% |
| !! | GGGAGTACTATTACTATCTT+GGG | + | chr4_3:9928738-9928757 | Msa0629080:CDS | 35.0% |
| ! | GGAGTACTATTACTATCTTG+GGG | + | chr4_3:9928739-9928758 | Msa0629080:CDS | 35.0% |
| ATCATGCTCGTAATAAGGTT+AGG | + | chr4_3:9928766-9928785 | Msa0629080:CDS | 35.0% | |
| TCATGCTCGTAATAAGGTTA+GGG | + | chr4_3:9928767-9928786 | Msa0629080:CDS | 35.0% | |
| GTGTGTTGCAAGATATGAGA+AGG | - | chr4_3:9922825-9922844 | None:intergenic | 40.0% | |
| CCTAACAACTTGCGATCTAT+TGG | - | chr4_3:9922898-9922917 | None:intergenic | 40.0% | |
| CCAATAGATCGCAAGTTGTT+AGG | + | chr4_3:9922895-9922914 | Msa0629080:CDS | 40.0% | |
| GTTGACTAAACCAAAAGCAG+TGG | - | chr4_3:9923034-9923053 | None:intergenic | 40.0% | |
| !! | AAACTTGTTGGAAGAGCTCA+AGG | + | chr4_3:9923096-9923115 | Msa0629080:CDS | 40.0% |
| ATTCTATGCATCTGCATCAC+AGG | + | chr4_3:9923119-9923138 | Msa0629080:CDS | 40.0% | |
| !! | GGGAGTACTCTTACTATTGT+AGG | + | chr4_3:9923198-9923217 | Msa0629080:CDS | 40.0% |
| GTACTCTTACTATTGTAGGG+AGG | + | chr4_3:9923202-9923221 | Msa0629080:CDS | 40.0% | |
| !!! | GGACTTTTCAGATTTGCTAG+AGG | + | chr4_3:9923273-9923292 | Msa0629080:intron | 40.0% |
| !! | AGAATCCACTTGTGTTGGTT+TGG | + | chr4_3:9923441-9923460 | Msa0629080:intron | 40.0% |
| ! | GAATTGAATCTGAGGCTTCA+GGG | - | chr4_3:9923500-9923519 | None:intergenic | 40.0% |
| ! | AGAATTGAATCTGAGGCTTC+AGG | - | chr4_3:9923501-9923520 | None:intergenic | 40.0% |
| ! | TAATTCCATTCTCTTGGTGC+CGG | - | chr4_3:9923835-9923854 | None:intergenic | 40.0% |
| !!! | GGTGCTTTTTTCCATATTCG+TGG | + | chr4_3:9923930-9923949 | Msa0629080:intron | 40.0% |
| ! | TTTCCATATTCGTGGCTCTA+TGG | + | chr4_3:9923938-9923957 | Msa0629080:intron | 40.0% |
| ! | TTCCATATTCGTGGCTCTAT+GGG | + | chr4_3:9923939-9923958 | Msa0629080:intron | 40.0% |
| !! | AGGTTGGTTGAATGGGTTAT+GGG | - | chr4_3:9924039-9924058 | None:intergenic | 40.0% |
| !! | TAGGTTGGTTGAATGGGTTA+TGG | - | chr4_3:9924040-9924059 | None:intergenic | 40.0% |
| !! | GAAGGAATAGGTTGGTTGAA+TGG | - | chr4_3:9924047-9924066 | None:intergenic | 40.0% |
| CTACATAGGAAGGAATAGGT+TGG | - | chr4_3:9924055-9924074 | None:intergenic | 40.0% | |
| CAACCTATTCCTTCCTATGT+AGG | + | chr4_3:9924053-9924072 | Msa0629080:intron | 40.0% | |
| ACTCCTACATAGGAAGGAAT+AGG | - | chr4_3:9924059-9924078 | None:intergenic | 40.0% | |
| ! | CTAGAAATCCGTTTTCTGAG+CGG | + | chr4_3:9924796-9924815 | Msa0629080:intron | 40.0% |
| TGAAGGCTAGGGAAATAACT+TGG | + | chr4_3:9924819-9924838 | Msa0629080:intron | 40.0% | |
| GAGACGTGACAACAAGATTA+AGG | - | chr4_3:9924890-9924909 | None:intergenic | 40.0% | |
| ACGTGCATTCAAACCTTCAA+TGG | + | chr4_3:9925165-9925184 | Msa0629080:intron | 40.0% | |
| GATGAGTCTGTAACCATTGA+AGG | - | chr4_3:9925181-9925200 | None:intergenic | 40.0% | |
| TAGCTAAGCCCAATATGTCT+TGG | - | chr4_3:9925245-9925264 | None:intergenic | 40.0% | |
| CTTCTTTGCTACTCGGTAAT+TGG | - | chr4_3:9925318-9925337 | None:intergenic | 40.0% | |
| TTACCGAGTAGCAAAGAAGA+AGG | + | chr4_3:9925319-9925338 | Msa0629080:intron | 40.0% | |
| TACCGAGTAGCAAAGAAGAA+GGG | + | chr4_3:9925320-9925339 | Msa0629080:intron | 40.0% | |
| ATCCCTTCTTCTTTGCTACT+CGG | - | chr4_3:9925325-9925344 | None:intergenic | 40.0% | |
| GGTCATTGTTGGATCAAACT+GGG | - | chr4_3:9926441-9926460 | None:intergenic | 40.0% | |
| AGGTCATTGTTGGATCAAAC+TGG | - | chr4_3:9926442-9926461 | None:intergenic | 40.0% | |
| CCTTCATAGTAGGTCATTGT+TGG | - | chr4_3:9926452-9926471 | None:intergenic | 40.0% | |
| CCAACAATGACCTACTATGA+AGG | + | chr4_3:9926449-9926468 | Msa0629080:intron | 40.0% | |
| TTGGGAAGAGATTGGGAAAA+AGG | - | chr4_3:9926584-9926603 | None:intergenic | 40.0% | |
| ! | TTGGTTCTTGGGAAGAGATT+GGG | - | chr4_3:9926591-9926610 | None:intergenic | 40.0% |
| ! | ATTGGTTCTTGGGAAGAGAT+TGG | - | chr4_3:9926592-9926611 | None:intergenic | 40.0% |
| ! | ATTTGACGAGGGGTTCTTTT+GGG | - | chr4_3:9926661-9926680 | None:intergenic | 40.0% |
| ! | TATTTGACGAGGGGTTCTTT+TGG | - | chr4_3:9926662-9926681 | None:intergenic | 40.0% |
| TTACTAGAAGTCACCCATGA+AGG | - | chr4_3:9927030-9927049 | None:intergenic | 40.0% | |
| ! | TGAGATTGTTATTCTGAGCG+AGG | + | chr4_3:9927532-9927551 | Msa0629080:intron | 40.0% |
| CTGCACCAAGATTGTTCAAT+AGG | - | chr4_3:9927671-9927690 | None:intergenic | 40.0% | |
| AATTGCAGTCTTGAACCTCA+AGG | + | chr4_3:9927918-9927937 | Msa0629080:intron | 40.0% | |
| ATTGCAGTCTTGAACCTCAA+GGG | + | chr4_3:9927919-9927938 | Msa0629080:intron | 40.0% | |
| AATTACATTAACCTCCCCTG+AGG | - | chr4_3:9928117-9928136 | None:intergenic | 40.0% | |
| GAAAAAAGGAGTGGGATGTA+GGG | - | chr4_3:9928173-9928192 | None:intergenic | 40.0% | |
| GAGAGGAAAGTGAACGAAAA+AGG | - | chr4_3:9928195-9928214 | None:intergenic | 40.0% | |
| ! | ATAGTAAAGTAGTGGAGGAG+AGG | - | chr4_3:9928278-9928297 | None:intergenic | 40.0% |
| TGGAGATAGTAAAGTAGTGG+AGG | - | chr4_3:9928283-9928302 | None:intergenic | 40.0% | |
| GAAGGAAGAAGAACAAAGTG+AGG | - | chr4_3:9928350-9928369 | None:intergenic | 40.0% | |
| GTGTGTTACAAGAGATGAGA+AGG | - | chr4_3:9928368-9928387 | None:intergenic | 40.0% | |
| CACACTCACTTCTTCAACAT+CGG | + | chr4_3:9928383-9928402 | Msa0629080:CDS | 40.0% | |
| CCTAACAACTTGCGATCTAT+TGG | - | chr4_3:9922898-9922917 | None:intergenic | 40.0% | |
| CCAATAGATCGCAAGTTGTT+AGG | + | chr4_3:9922895-9922914 | Msa0629080:CDS | 40.0% | |
| GTTGTTAGGCCTAAACAAGA+AGG | + | chr4_3:9928449-9928468 | Msa0629080:CDS | 40.0% | |
| !! | AAACTTGTTGGTAGAGCTCA+AGG | + | chr4_3:9928636-9928655 | Msa0629080:CDS | 40.0% |
| ATTCTATGCATCTGCTTCAC+TGG | + | chr4_3:9928659-9928678 | Msa0629080:CDS | 40.0% | |
| TCTGCTTCACTGGAAGAAAT+AGG | + | chr4_3:9928669-9928688 | Msa0629080:CDS | 40.0% | |
| GTACTATTACTATCTTGGGG+AGG | + | chr4_3:9928742-9928761 | Msa0629080:CDS | 40.0% | |
| GAGGAATCATGCTCGTAATA+AGG | + | chr4_3:9928761-9928780 | Msa0629080:CDS | 40.0% | |
| !!! | GGACTTTTCAGATTTGCTAC+AGG | + | chr4_3:9928813-9928832 | Msa0629080:CDS | 40.0% |
| ATGCTCAAGCTAGTACTCAT+TGG | + | chr4_3:9928838-9928857 | Msa0629080:CDS | 40.0% | |
| ATTGGATTGATGCCAAAGCT+GGG | + | chr4_3:9928856-9928875 | Msa0629080:CDS | 40.0% | |
| GGAACAATTGCAACCGAAGT+TGG | - | chr4_3:9922988-9923007 | None:intergenic | 45.0% | |
| TCTGCATCACAGGAAGAACT+AGG | + | chr4_3:9923129-9923148 | Msa0629080:CDS | 45.0% | |
| !! | ATCCACTTGTGTTGGTTTGG+TGG | + | chr4_3:9923444-9923463 | Msa0629080:intron | 45.0% |
| TACCACCAAACCAACACAAG+TGG | - | chr4_3:9923449-9923468 | None:intergenic | 45.0% | |
| AGATACTCTCTTCAACCTCG+AGG | + | chr4_3:9923794-9923813 | Msa0629080:intron | 45.0% | |
| !! | AATTCCATTCTCTTGGTGCC+GGG | - | chr4_3:9923834-9923853 | None:intergenic | 45.0% |
| ACGTGATATGCGTATGTGGT+CGG | - | chr4_3:9923890-9923909 | None:intergenic | 45.0% | |
| ACCACATACGCATATCACGT+TGG | + | chr4_3:9923890-9923909 | Msa0629080:intron | 45.0% | |
| TTCCCATAGAGCCACGAATA+TGG | - | chr4_3:9923944-9923963 | None:intergenic | 45.0% | |
| !! | GGTTGGTTGAATGGGTTATG+GGG | - | chr4_3:9924038-9924057 | None:intergenic | 45.0% |
| ! | GGTAGTGGCAGACATATTCA+AGG | - | chr4_3:9924648-9924667 | None:intergenic | 45.0% |
| GCGCTACTCAAAACATGAAG+AGG | + | chr4_3:9926734-9926753 | Msa0629080:intron | 45.0% | |
| AATTACACTAACCTCCCCTG+AGG | + | chr4_3:9927240-9927259 | Msa0629080:intron | 45.0% | |
| GTTTAAGAAAACCTCAGGGG+AGG | - | chr4_3:9927254-9927273 | None:intergenic | 45.0% | |
| ACAGTTAGTTCATAGAGGGG+AGG | - | chr4_3:9927314-9927333 | None:intergenic | 45.0% | |
| AAGAAGAAGATGAGCGTCAG+CGG | - | chr4_3:9927459-9927478 | None:intergenic | 45.0% | |
| TGGTGCAGCAGATAATGTAG+CGG | + | chr4_3:9927741-9927760 | Msa0629080:intron | 45.0% | |
| ATTTAAGCAAACCTCAGGGG+AGG | + | chr4_3:9928103-9928122 | Msa0629080:intron | 45.0% | |
| GGAAAAAAGGAGTGGGATGT+AGG | - | chr4_3:9928174-9928193 | None:intergenic | 45.0% | |
| CATTGGATTGATGCCAAAGC+TGG | + | chr4_3:9928855-9928874 | Msa0629080:CDS | 45.0% | |
| TTGGATTGATGCCAAAGCTG+GGG | + | chr4_3:9928857-9928876 | Msa0629080:CDS | 45.0% | |
| !!! | GTTAATTTTTTTTTTTTTAA+AGG | - | chr4_3:9924118-9924137 | None:intergenic | 5.0% |
| GTTAGGGAGATGCCTGTTGT+TGG | + | chr4_3:9923243-9923262 | Msa0629080:intron | 50.0% | |
| !! | ATGCCTGTTGTTGGTGGTAG+TGG | + | chr4_3:9923252-9923271 | Msa0629080:intron | 50.0% |
| AGTCCACTACCACCAACAAC+AGG | - | chr4_3:9923258-9923277 | None:intergenic | 50.0% | |
| !! | GAGAGTATCTCTCAACCACG+TGG | - | chr4_3:9923784-9923803 | None:intergenic | 50.0% |
| CTCTTCAACCTCGAGGAACT+TGG | + | chr4_3:9923801-9923820 | Msa0629080:intron | 50.0% | |
| AACCTCGAGGAACTTGGTTC+AGG | + | chr4_3:9923807-9923826 | Msa0629080:intron | 50.0% | |
| GCCAACGTGATATGCGTATG+TGG | - | chr4_3:9923894-9923913 | None:intergenic | 50.0% | |
| !! | GTTGAATGGGTTATGGGGTG+TGG | - | chr4_3:9924033-9924052 | None:intergenic | 50.0% |
| TGGAGTTGGAGCTCTCAGAA+TGG | + | chr4_3:9924482-9924501 | Msa0629080:intron | 50.0% | |
| ! | ATCCGTTTTCTGAGCGGTGA+AGG | + | chr4_3:9924802-9924821 | Msa0629080:intron | 50.0% |
| AGCCTTCACCGCTCAGAAAA+CGG | - | chr4_3:9924807-9924826 | None:intergenic | 50.0% | |
| ! | TTTTCTGAGCGGTGAAGGCT+AGG | + | chr4_3:9924807-9924826 | Msa0629080:intron | 50.0% |
| TTTCTGAGCGGTGAAGGCTA+GGG | + | chr4_3:9924808-9924827 | Msa0629080:intron | 50.0% | |
| GAGTTGGGCATATTCGAGCT+TGG | - | chr4_3:9925668-9925687 | None:intergenic | 50.0% | |
| !!! | ACGAGGGGTTCTTTTGGGTT+GGG | - | chr4_3:9926656-9926675 | None:intergenic | 50.0% |
| GGTTGGGTGTATTTGACGAG+GGG | - | chr4_3:9926671-9926690 | None:intergenic | 50.0% | |
| GGGTTGGGTGTATTTGACGA+GGG | - | chr4_3:9926672-9926691 | None:intergenic | 50.0% | |
| AGGGTTGGGTGTATTTGACG+AGG | - | chr4_3:9926673-9926692 | None:intergenic | 50.0% | |
| ! | AGTAAAGCAGAGGTGTGCCA+TGG | - | chr4_3:9927397-9927416 | None:intergenic | 50.0% |
| ! | TCGGAGTGCTCCTTCTTCTA+CGG | - | chr4_3:9927960-9927979 | None:intergenic | 50.0% |
| GGAACAACTGCAACCGAAGT+TGG | - | chr4_3:9928528-9928547 | None:intergenic | 50.0% | |
| GTTAGGGAGATGCCTGTTGT+TGG | + | chr4_3:9923243-9923262 | Msa0629080:intron | 50.0% | |
| !! | ATGCCTGTTGTTGGTGGTAG+TGG | + | chr4_3:9923252-9923271 | Msa0629080:intron | 50.0% |
| AGTCCACTACCACCAACAAC+AGG | - | chr4_3:9923258-9923277 | None:intergenic | 50.0% | |
| AACACAAGCATCCCCAGCTT+TGG | - | chr4_3:9928871-9928890 | None:intergenic | 50.0% | |
| AGGGAGATGCCTGTTGTTGG+TGG | + | chr4_3:9923246-9923265 | Msa0629080:intron | 55.0% | |
| TCAGGGATGAGCACACTCTC+AGG | - | chr4_3:9923483-9923502 | None:intergenic | 55.0% | |
| TCTCAACCACGTGGCATCTC+GGG | - | chr4_3:9923775-9923794 | None:intergenic | 55.0% | |
| CTCTCAACCACGTGGCATCT+CGG | - | chr4_3:9923776-9923795 | None:intergenic | 55.0% | |
| GTCCTGAACCAAGTTCCTCG+AGG | - | chr4_3:9923812-9923831 | None:intergenic | 55.0% | |
| GAGGAACTTGGTTCAGGACC+CGG | + | chr4_3:9923813-9923832 | Msa0629080:intron | 55.0% | |
| TTGGCCACGCCACAAAGACT+TGG | + | chr4_3:9923909-9923928 | Msa0629080:intron | 55.0% | |
| AGCACCAAGTCTTTGTGGCG+TGG | - | chr4_3:9923916-9923935 | None:intergenic | 55.0% | |
| !! | GTGGCGTGGTTGTTGACTCA+TGG | - | chr4_3:9924014-9924033 | None:intergenic | 55.0% |
| CTGCGTGATGCGCATGATTG+AGG | + | chr4_3:9924621-9924640 | Msa0629080:intron | 55.0% | |
| GTCTGCCACTACCTTGTGCA+CGG | + | chr4_3:9924655-9924674 | Msa0629080:intron | 55.0% | |
| GTCTATGTGCACCGTGCACA+AGG | - | chr4_3:9924669-9924688 | None:intergenic | 55.0% | |
| !! | GACGAGGGGTTCTTTTGGGT+TGG | - | chr4_3:9926657-9926676 | None:intergenic | 55.0% |
| ! | CAGAGGTGTGCCATGGTGTA+AGG | - | chr4_3:9927390-9927409 | None:intergenic | 55.0% |
| AGGAGTGGGATGTAGGGTCA+AGG | - | chr4_3:9928167-9928186 | None:intergenic | 55.0% | |
| AGGGAGATGCCTGTTGTTGG+TGG | + | chr4_3:9923246-9923265 | Msa0629080:intron | 55.0% | |
| AGGACCCGGCACCAAGAGAA+TGG | + | chr4_3:9923827-9923846 | Msa0629080:intron | 60.0% | |
| ! | ATGGGTTATGGGGTGTGGCG+TGG | - | chr4_3:9924028-9924047 | None:intergenic | 60.0% |
| GTGCACCGTGCACAAGGTAG+TGG | - | chr4_3:9924663-9924682 | None:intergenic | 60.0% | |
| TGAGCGTCAGCGGAGAACTG+AGG | - | chr4_3:9927449-9927468 | None:intergenic | 60.0% | |
| CACGTGGCATCTCGGGAGAC+TGG | - | chr4_3:9923768-9923787 | None:intergenic | 65.0% | |
| CAGTCTCCCGAGATGCCACG+TGG | + | chr4_3:9923766-9923785 | Msa0629080:intron | 65.0% | |
| TGGGTGTGTGCATCGCGCAG+TGG | - | chr4_3:9924691-9924710 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 9922805 | 9928920 | 9922805 | ID=Msa0629080;Name=Msa0629080 |
| chr4_3 | mRNA | 9922805 | 9928920 | 9922805 | ID=Msa0629080-mRNA-1;Parent=Msa0629080;Name=Msa0629080-mRNA-1;_AED=0.29;_eAED=0.30;_QI=0|0|0|1|0|0|3|0|347 |
| chr4_3 | exon | 9922805 | 9923042 | 9922805 | ID=Msa0629080-mRNA-1:exon:3009;Parent=Msa0629080-mRNA-1 |
| chr4_3 | exon | 9923049 | 9923242 | 9923049 | ID=Msa0629080-mRNA-1:exon:3010;Parent=Msa0629080-mRNA-1 |
| chr4_3 | exon | 9928309 | 9928920 | 9928309 | ID=Msa0629080-mRNA-1:exon:3011;Parent=Msa0629080-mRNA-1 |
| chr4_3 | CDS | 9922805 | 9923042 | 9922805 | ID=Msa0629080-mRNA-1:cds;Parent=Msa0629080-mRNA-1 |
| chr4_3 | CDS | 9923049 | 9923242 | 9923049 | ID=Msa0629080-mRNA-1:cds;Parent=Msa0629080-mRNA-1 |
| chr4_3 | CDS | 9928309 | 9928920 | 9928309 | ID=Msa0629080-mRNA-1:cds;Parent=Msa0629080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
