AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0666620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0666620 MtrunA17_Chr4g0005031 93.171 205 14 0 175 379 17 221 7.53e-132 376
Msa0666620 MtrunA17_Chr4g0005031 69.347 199 47 4 1 185 23 221 1.54e-82 251
Msa0666620 MtrunA17_Chr4g0005081 78.392 199 41 1 181 379 1 197 1.64e-109 318
Msa0666620 MtrunA17_Chr4g0005081 68.182 198 49 4 1 185 1 197 2.31e-83 252
Msa0666620 MtrunA17_Chr4g0005071 77.387 199 42 1 181 379 1 196 8.51e-107 311
Msa0666620 MtrunA17_Chr4g0005071 67.172 198 50 4 1 185 1 196 8.47e-80 243
Msa0666620 MtrunA17_Chr4g0005041 73.656 186 43 3 196 379 17 198 1.67e-99 293
Msa0666620 MtrunA17_Chr4g0005041 75.956 183 30 4 16 185 17 198 4.44e-92 274
Msa0666620 MtrunA17_Chr7g0259101 41.730 393 193 9 13 379 11 393 4.89e-99 299
Msa0666620 MtrunA17_Chr4g0005011 73.367 199 51 1 181 379 1 197 7.28e-97 286
Msa0666620 MtrunA17_Chr4g0005011 64.835 182 50 4 1 168 1 182 7.69e-69 215
Msa0666620 MtrunA17_Chr7g0243501 71.930 171 46 2 210 379 23 192 3.34e-78 239
Msa0666620 MtrunA17_Chr7g0243501 60.847 189 59 4 11 185 5 192 1.75e-63 201
Msa0666620 MtrunA17_Chr4g0005111 58.639 191 71 3 189 379 8 190 7.77e-73 225
Msa0666620 MtrunA17_Chr4g0005111 51.323 189 74 5 9 185 8 190 3.53e-57 185
Msa0666620 MtrunA17_Chr1g0175911 60.000 165 64 1 215 379 30 192 8.45e-66 207
Msa0666620 MtrunA17_Chr1g0175911 50.000 164 67 4 35 185 31 192 7.14e-46 155
Msa0666620 MtrunA17_Chr4g0005131 57.647 170 69 2 211 379 24 191 4.23e-63 200
Msa0666620 MtrunA17_Chr4g0005131 53.254 169 65 3 30 185 24 191 2.23e-50 167
Msa0666620 MtrunA17_Chr4g0037481 54.545 154 68 2 228 379 39 192 3.94e-55 179
Msa0666620 MtrunA17_Chr4g0037481 45.455 154 71 3 45 185 39 192 5.43e-39 137
Msa0666620 MtrunA17_Chr7g0259091 48.404 188 92 4 193 379 11 194 2.30e-53 175
Msa0666620 MtrunA17_Chr7g0259091 45.513 156 72 2 43 185 39 194 3.50e-40 141
Msa0666620 MtrunA17_Chr4g0005091 52.356 191 70 5 189 379 6 175 2.39e-53 174
Msa0666620 MtrunA17_Chr4g0005091 45.699 186 76 4 9 185 6 175 6.46e-45 152
Msa0666620 MtrunA17_Chr7g0259071 48.193 166 84 2 215 379 27 191 3.35e-53 174
Msa0666620 MtrunA17_Chr7g0259071 42.073 164 82 2 35 185 28 191 2.56e-41 144
Msa0666620 MtrunA17_Chr7g0259121 53.205 156 68 2 229 379 38 193 2.82e-51 171
Msa0666620 MtrunA17_Chr7g0259121 43.293 164 76 3 39 185 30 193 3.67e-40 141
Msa0666620 MtrunA17_Chr1g0177051 50.685 146 70 2 234 378 41 185 1.23e-45 155
Msa0666620 MtrunA17_Chr1g0177051 42.038 157 74 5 44 184 30 185 1.67e-31 117
Msa0666620 MtrunA17_Chr3g0136641 46.584 161 84 2 221 379 28 188 3.35e-44 151
Msa0666620 MtrunA17_Chr3g0136641 39.474 152 78 3 48 185 37 188 2.47e-28 109
Msa0666620 MtrunA17_Chr3g0136631 45.283 159 84 2 224 379 31 189 3.80e-41 143
Msa0666620 MtrunA17_Chr3g0136631 35.751 193 101 5 8 185 5 189 5.29e-27 105
Msa0666620 MtrunA17_Chr3g0085291 46.497 157 78 2 224 378 34 186 8.20e-41 142
Msa0666620 MtrunA17_Chr3g0085291 42.069 145 74 4 49 184 43 186 3.52e-28 108
Msa0666620 MtrunA17_Chr3g0085311 45.860 157 81 2 224 378 34 188 8.88e-41 142
Msa0666620 MtrunA17_Chr3g0085311 42.282 149 70 5 49 184 43 188 5.79e-29 111
Msa0666620 MtrunA17_Chr4g0040551 45.946 148 78 1 232 379 40 185 1.64e-40 141
Msa0666620 MtrunA17_Chr4g0040551 39.735 151 81 2 46 186 36 186 1.10e-30 115
Msa0666620 MtrunA17_Chr3g0090231 45.946 148 78 1 232 379 40 185 5.18e-40 140
Msa0666620 MtrunA17_Chr3g0090231 39.869 153 78 3 46 186 36 186 1.12e-29 113
Msa0666620 MtrunA17_Chr3g0085301 41.000 200 107 4 179 378 5 193 8.87e-40 140
Msa0666620 MtrunA17_Chr3g0085301 38.462 169 87 4 6 164 12 173 8.17e-28 108
Msa0666620 MtrunA17_Chr3g0085321 41.667 192 98 5 191 378 7 188 3.41e-39 138
Msa0666620 MtrunA17_Chr3g0085321 35.928 167 93 3 8 164 6 168 3.63e-29 111
Msa0666620 MtrunA17_Chr5g0446751 42.308 156 78 3 232 379 38 189 5.72e-37 132
Msa0666620 MtrunA17_Chr5g0446751 37.000 200 96 6 4 185 2 189 1.20e-26 105
Msa0666620 MtrunA17_Chr4g0068381 40.141 142 85 0 238 379 39 180 5.07e-28 108
Msa0666620 MtrunA17_Chr4g0068381 36.283 113 69 1 76 185 68 180 2.66e-17 79.0
Msa0666620 MtrunA17_Chr4g0068391 38.621 145 83 2 238 379 39 180 2.44e-25 101
Msa0666620 MtrunA17_Chr4g0068391 36.283 113 69 1 76 185 68 180 1.63e-16 77.0
Msa0666620 MtrunA17_Chr4g0024951 29.932 147 103 0 228 374 27 173 7.11e-18 80.9
Msa0666620 MtrunA17_Chr4g0024951 27.703 148 95 3 48 183 29 176 9.33e-14 68.9
Msa0666620 MtrunA17_Chr4g0024961 29.371 143 101 0 232 374 31 173 1.24e-17 80.1
Msa0666620 MtrunA17_Chr4g0024961 28.082 146 93 3 50 183 31 176 9.00e-13 66.2
Msa0666620 MtrunA17_Chr8g0387701 34.586 133 78 3 238 362 41 172 9.00e-16 75.1
Msa0666620 MtrunA17_Chr4g0005061 71.429 42 8 1 338 379 189 226 1.28e-15 75.5
Msa0666620 MtrunA17_Chr4g0005061 75.000 44 11 0 68 111 1 44 1.74e-15 75.1
Msa0666620 MtrunA17_Chr4g0005061 69.767 43 13 0 259 301 1 43 1.66e-13 69.3
Msa0666620 MtrunA17_Chr8g0387711 33.088 136 74 4 239 362 38 168 2.51e-13 68.2
Msa0666620 MtrunA17_Chr8g0370591 35.135 148 81 7 235 375 42 181 6.41e-12 63.9
Msa0666620 MtrunA17_Chr8g0370501 35.135 148 81 7 235 375 42 181 6.66e-12 63.9
Msa0666620 MtrunA17_Chr1g0212861 35.246 122 66 5 267 378 235 353 5.19e-11 63.5
Msa0666620 MtrunA17_Chr1g0169281 37.778 90 52 2 75 161 141 229 5.42e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0666620 AT1G55210.1 63.030 165 58 1 215 379 26 187 2.37e-73 226
Msa0666620 AT1G55210.1 49.198 187 82 4 9 185 4 187 5.96e-55 179
Msa0666620 AT1G55210.2 63.030 165 58 1 215 379 26 187 2.37e-73 226
Msa0666620 AT1G55210.2 49.198 187 82 4 9 185 4 187 5.96e-55 179
Msa0666620 AT5G49040.1 54.497 189 85 1 191 379 4 191 2.79e-71 221
Msa0666620 AT5G49040.1 50.532 188 80 3 11 185 4 191 5.96e-56 182
Msa0666620 AT1G58170.1 63.816 152 55 0 228 379 34 185 1.49e-70 219
Msa0666620 AT1G58170.1 54.301 186 66 3 12 185 7 185 5.91e-61 194
Msa0666620 AT3G13650.1 52.910 189 83 3 191 379 4 186 6.36e-65 205
Msa0666620 AT3G13650.1 46.486 185 86 3 12 185 4 186 2.04e-50 167
Msa0666620 AT5G49030.3 53.672 177 79 1 189 365 4 177 3.18e-55 196
Msa0666620 AT5G49030.3 49.462 186 81 3 11 183 4 189 2.46e-45 167
Msa0666620 AT3G13662.1 56.376 149 62 2 218 366 27 172 3.27e-53 174
Msa0666620 AT3G13662.1 45.977 174 77 6 11 172 4 172 1.21e-40 142
Msa0666620 AT2G21100.1 54.362 149 68 0 230 378 39 187 1.81e-52 173
Msa0666620 AT2G21100.1 42.581 155 77 2 42 184 33 187 7.46e-37 132
Msa0666620 AT2G21100.2 54.362 149 68 0 230 378 39 187 1.81e-52 173
Msa0666620 AT2G21100.2 42.581 155 77 2 42 184 33 187 7.46e-37 132
Msa0666620 AT1G65870.1 50.331 151 75 0 228 378 39 189 1.18e-50 168
Msa0666620 AT1G65870.1 45.333 150 70 2 47 184 40 189 6.14e-37 132
Msa0666620 AT3G13660.1 65.254 118 41 0 262 379 8 125 2.99e-50 165
Msa0666620 AT3G13660.1 58.475 118 46 1 71 185 8 125 3.80e-40 139
Msa0666620 AT1G22900.1 50.331 151 73 1 228 378 45 193 7.86e-46 156
Msa0666620 AT1G22900.1 42.000 150 73 3 47 184 46 193 2.81e-31 117
Msa0666620 AT5G42500.1 43.605 172 90 2 207 378 21 185 6.17e-45 153
Msa0666620 AT5G42500.1 40.667 150 75 3 47 184 38 185 3.94e-31 117
Msa0666620 AT5G42510.1 49.342 152 71 3 229 378 35 182 2.81e-44 151
Msa0666620 AT5G42510.1 40.667 150 75 3 47 184 35 182 1.06e-30 115
Msa0666620 AT4G38700.1 44.231 156 81 3 230 379 35 190 7.87e-39 137
Msa0666620 AT4G38700.1 37.037 162 84 3 42 185 29 190 1.49e-28 110
Msa0666620 AT2G21110.1 41.860 172 90 2 212 379 21 186 8.04e-39 137
Msa0666620 AT2G21110.1 34.320 169 90 3 33 185 23 186 1.49e-26 105
Msa0666620 AT3G58090.1 54.128 109 50 0 270 378 163 271 2.59e-37 136
Msa0666620 AT3G58090.1 43.846 130 61 2 67 184 142 271 3.53e-27 108
Msa0666620 AT4G23690.1 35.000 140 82 4 227 361 34 169 1.55e-14 72.0
Msa0666620 AT4G11210.1 29.714 175 111 4 188 362 4 166 2.29e-14 71.2
Msa0666620 AT1G64160.1 31.579 133 82 4 235 362 37 165 3.46e-13 67.8

Find 71 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAAGTACACTTACTATTT+TGG 0.090168 4_4:+6709252 Msa0666620:CDS
AGTTCTGGTCCTAATGTTAA+AGG 0.200219 4_4:-6709121 None:intergenic
TCTGCATCACAAGATGATTT+TGG 0.206525 4_4:+6713584 Msa0666620:CDS
TTTGATGACCCTTTGACTTT+AGG 0.248779 4_4:+6713512 Msa0666620:CDS
CTAAACACGACAACTGCTTT+TGG 0.250268 4_4:+6709076 Msa0666620:CDS
ACTATCTTGGGGAGGAATTC+TGG 0.259975 4_4:+6713665 Msa0666620:CDS
ATTGATAACCCTTTAACATT+AGG 0.316470 4_4:+6709112 Msa0666620:CDS
CTAAACACAACCACTTCTTT+TGG 0.324796 4_4:+6713476 Msa0666620:CDS
CATTGGTTTGATCTCAAAAC+TGG 0.336336 4_4:+6713770 Msa0666620:CDS
TTTAATAATTTGCGGTCTAT+AGG 0.343916 4_4:-6708953 None:intergenic
GGTAGTACTATTACTATCTT+GGG 0.346488 4_4:+6713653 Msa0666620:CDS
CCTAACAACTTGCGGTCTAT+TGG 0.349675 4_4:-6713350 None:intergenic
GAGGAATTCTGGTATTAATA+AGG 0.355147 4_4:+6713676 Msa0666620:CDS
TTCATTGAAGGAAAGTATAA+TGG 0.359474 4_4:+6713632 Msa0666620:CDS
CCAATAGACCGCAAGTTGTT+AGG 0.362080 4_4:+6713350 Msa0666620:CDS
TGGTAGTACTATTACTATCT+TGG 0.363892 4_4:+6713652 Msa0666620:CDS
AGATGAAGTTGATTTGCTTA+TGG 0.369472 4_4:+6709195 Msa0666620:CDS
TAAGTCACTTCAGATTCTAT+TGG 0.373289 4_4:+6713393 Msa0666620:CDS
ATGCCTATTGTTGGTGGTAG+TGG 0.375988 4_4:+6713707 Msa0666620:CDS
CATTGGTTTGATATCAAAAC+CGG 0.379656 4_4:+6709370 Msa0666620:CDS
TTTACTGAAGGAAAATATAA+TGG 0.380359 4_4:+6709232 Msa0666620:CDS
AGGACCAGAACTGAGTTCTA+AGG 0.395502 4_4:+6709132 Msa0666620:CDS
AAGTGATGGTGTTGCAAGAT+AGG 0.403929 4_4:-6708883 None:intergenic
AAGTGAGAGTGTTGCAAGAG+AGG 0.407219 4_4:-6713277 None:intergenic
TCTTTAGGTTTAATAATTTG+CGG 0.414614 4_4:-6708961 None:intergenic
CAATTGAGTTCAAAGCTTGT+TGG 0.414835 4_4:+6713539 Msa0666620:CDS
GTTCTGGTCCTAATGTTAAA+GGG 0.423463 4_4:-6709120 None:intergenic
ATGCTGAAGCTAATACTCAT+TGG 0.445682 4_4:+6709353 Msa0666620:CDS
GAACTGAGTTCTAAGGTTGT+TGG 0.452309 4_4:+6709139 Msa0666620:CDS
GAGTGTTGCAAGAGAGGAGA+AGG 0.459092 4_4:-6713271 None:intergenic
AGTCCACTACCACCAACAAT+AGG 0.461846 4_4:-6713710 None:intergenic
GTTGTCGTGTTTAGTTTCAA+TGG 0.464443 4_4:-6709067 None:intergenic
AGAACAAATTGAGAAAATGA+TGG 0.464684 4_4:-6713244 None:intergenic
GTGTTTAGCTTCAATGTTGG+TGG 0.465209 4_4:-6713461 None:intergenic
ATGCTCAAGCTAGTACTCAT+TGG 0.468719 4_4:+6713753 Msa0666620:CDS
ACAACCTTAGAACTCAGTTC+TGG 0.474628 4_4:-6709136 None:intergenic
AGAACAAAGTGATGAAGTGT+TGG 0.478622 4_4:-6708850 None:intergenic
GAACAAAGTGATGAAGTGTT+GGG 0.498072 4_4:-6708849 None:intergenic
GTGTTTAGTTTCAATGGTGG+TGG 0.501953 4_4:-6709061 None:intergenic
TAAGTCATTTCAGATTCTAC+TGG 0.503837 4_4:+6708993 Msa0666620:CDS
AAGGTTGTTGGAAAAGCTCA+AGG 0.511935 4_4:+6709151 Msa0666620:CDS
AATCCACTGCCACCATTCAC+AGG 0.517270 4_4:-6709310 None:intergenic
AATTGTGGTCCTAAAGTCAA+AGG 0.518289 4_4:-6713521 None:intergenic
AGGGAGATGCCTATTGTTGG+TGG 0.523499 4_4:+6713701 Msa0666620:CDS
GAACAAATTGAGAAAATGAT+GGG 0.523672 4_4:-6713243 None:intergenic
CAAATTATTAAACCTAAAGA+AGG 0.527897 4_4:+6708964 Msa0666620:CDS
AAGCTTGTTGGAAAAGCTCA+AGG 0.537211 4_4:+6713551 Msa0666620:CDS
GCTAGGGAGATGCCTATTGT+TGG 0.537497 4_4:+6713698 Msa0666620:CDS
TGGTGTTGCAAGATAGGAGA+AGG 0.539243 4_4:-6708877 None:intergenic
TGTTTAGGCCTAACAACTTG+CGG 0.544500 4_4:-6713358 None:intergenic
TATTGGCATGATATCTTGAG+TGG 0.547416 4_4:+6713410 Msa0666620:CDS
TTCTGGTATTAATAAGGCTA+GGG 0.556111 4_4:+6713682 Msa0666620:CDS
GTTGTGTTTAGCTTCAATGT+TGG 0.558040 4_4:-6713464 None:intergenic
ATACTCAACAATAGCATCCC+CGG 0.565003 4_4:-6709389 None:intergenic
ATTCTGGTATTAATAAGGCT+AGG 0.573511 4_4:+6713681 Msa0666620:CDS
ATGCCTGTGAATGGTGGCAG+TGG 0.576386 4_4:+6709307 Msa0666620:CDS
TGGAACAATTGTAATTGCAG+TGG 0.585063 4_4:-6713441 None:intergenic
ATTGTGGTCCTAAAGTCAAA+GGG 0.585066 4_4:-6713520 None:intergenic
ACAAGCTTTGAACTCAATTG+TGG 0.587677 4_4:-6713536 None:intergenic
GGAACAATTGTAATTGCAGT+GGG 0.604180 4_4:-6713440 None:intergenic
GTTAGAGAGATGCCTGTGAA+TGG 0.613228 4_4:+6709298 Msa0666620:intron
ATTGGCATGATATCTTGAGT+GGG 0.617876 4_4:+6713411 Msa0666620:CDS
TGATGATGATGTTAAAGTGA+TGG 0.638584 4_4:-6708897 None:intergenic
AGGTTGTTGGAAAAGCTCAA+GGG 0.639795 4_4:+6709152 Msa0666620:CDS
GTTGACTGAACCAAAAGAAG+TGG 0.640485 4_4:-6713486 None:intergenic
ATTGGTTTGATATCAAAACC+GGG 0.644981 4_4:+6709371 Msa0666620:CDS
GTCGTGTTTAGTTTCAATGG+TGG 0.656285 4_4:-6709064 None:intergenic
GTACTATTACTATCTTGGGG+AGG 0.673978 4_4:+6713657 Msa0666620:CDS
TTGGTTTGATATCAAAACCG+GGG 0.681345 4_4:+6709372 Msa0666620:CDS
GTAGTACTATTACTATCTTG+GGG 0.684734 4_4:+6713654 Msa0666620:CDS
AGAGAGATGCCTGTGAATGG+TGG 0.701655 4_4:+6709301 Msa0666620:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAACAATTACTTTTTTT+TGG + chr4_4:6710753-6710772 Msa0666620:intron 10.0%
!!! AGATATTTTAATAATGAAAT+AGG + chr4_4:6711732-6711751 Msa0666620:intron 10.0%
!!! AATATTATAGTTTATTTTGA+TGG - chr4_4:6711993-6712012 None:intergenic 10.0%
!! TGAAATTGTAAAATATTATA+AGG + chr4_4:6712339-6712358 Msa0666620:intron 10.0%
!! TAAATAAGTGAAAAAAAAAT+TGG + chr4_4:6712389-6712408 Msa0666620:intron 10.0%
!!! TGATTTTTTCAAAAATAAAT+TGG + chr4_4:6712797-6712816 Msa0666620:intron 10.0%
!!! GATTTTTTCAAAAATAAATT+GGG + chr4_4:6712798-6712817 Msa0666620:intron 10.0%
!!! ATTTTTTCAAAAATAAATTG+GGG + chr4_4:6712799-6712818 Msa0666620:intron 10.0%
!! AAATAATCTAGCTATATATA+TGG + chr4_4:6709551-6709570 Msa0666620:intron 15.0%
!!! AAAATGAACACAAATTTTTA+AGG - chr4_4:6710175-6710194 None:intergenic 15.0%
!!! AAATGCCTTTTTTTTTTTTT+TGG + chr4_4:6710380-6710399 Msa0666620:intron 15.0%
!! CATATAATTAAATTGTTGAT+AGG - chr4_4:6710489-6710508 None:intergenic 15.0%
!! AACAATTTAATTATATGCTT+GGG + chr4_4:6710492-6710511 Msa0666620:intron 15.0%
!! TATAGAAAAAAAGTTTATCT+AGG + chr4_4:6711073-6711092 Msa0666620:intron 15.0%
!!! ATTAAAAAATCAATTTTGCA+CGG + chr4_4:6711381-6711400 Msa0666620:intron 15.0%
!!! TTTTTTTTTTTTTGAAAGAG+CGG + chr4_4:6711650-6711669 Msa0666620:intron 15.0%
!! AATAGGAAAATAAAGTTAAA+AGG + chr4_4:6711749-6711768 Msa0666620:intron 15.0%
!! TCAATAATAATAATGATTTG+AGG + chr4_4:6711827-6711846 Msa0666620:intron 15.0%
!! CAATAATAATAATGATTTGA+GGG + chr4_4:6711828-6711847 Msa0666620:intron 15.0%
!!! AAAATAGAACATATTTTAAG+GGG - chr4_4:6712442-6712461 None:intergenic 15.0%
!!! CAAAATAGAACATATTTTAA+GGG - chr4_4:6712443-6712462 None:intergenic 15.0%
!!! TCAAAATAGAACATATTTTA+AGG - chr4_4:6712444-6712463 None:intergenic 15.0%
!!! TTTTTTCAAAAATAAATTGG+GGG + chr4_4:6712800-6712819 Msa0666620:intron 15.0%
!! TATATAAGAGAATAATGAAA+AGG - chr4_4:6713169-6713188 None:intergenic 15.0%
!!! TCTTTAGGTTTAATAATTTG+CGG - chr4_4:6708964-6708983 None:intergenic 20.0%
!! CAAATTATTAAACCTAAAGA+AGG + chr4_4:6708964-6708983 Msa0666620:CDS 20.0%
!!! ATTATATTTTCCTTCAGTAA+AGG - chr4_4:6709233-6709252 None:intergenic 20.0%
!! TTTACTGAAGGAAAATATAA+TGG + chr4_4:6709232-6709251 Msa0666620:CDS 20.0%
!!! TTTTTTTCTTCTTGTTTTTG+AGG + chr4_4:6709831-6709850 Msa0666620:intron 20.0%
!!! TTTTTTCTTCTTGTTTTTGA+GGG + chr4_4:6709832-6709851 Msa0666620:intron 20.0%
!!! ATTTTTACACAAAGATTGAA+AGG + chr4_4:6710013-6710032 Msa0666620:intron 20.0%
!! CAAAATTTAATGTACATTTG+AGG - chr4_4:6710132-6710151 None:intergenic 20.0%
!!! CTCAAATGTACATTAAATTT+TGG + chr4_4:6710130-6710149 Msa0666620:intron 20.0%
!! TAAGGATTGTATACTTATTA+TGG - chr4_4:6710157-6710176 None:intergenic 20.0%
!! AAAGAAATGAAAGTTCATAA+TGG + chr4_4:6710215-6710234 Msa0666620:intron 20.0%
!! TGCTAATATTTCATTGAAAA+TGG - chr4_4:6710296-6710315 None:intergenic 20.0%
!! CAACAATTTAATTATATGCT+TGG + chr4_4:6710491-6710510 Msa0666620:intron 20.0%
!!! TATTCACAACAAATTTTGTT+AGG + chr4_4:6710671-6710690 Msa0666620:intron 20.0%
!!! ATTCACAACAAATTTTGTTA+GGG + chr4_4:6710672-6710691 Msa0666620:intron 20.0%
!!! TAACAATTACTTTTTTTTGG+TGG + chr4_4:6710756-6710775 Msa0666620:intron 20.0%
!!! TAATTTTTTATTACTACCAC+TGG + chr4_4:6710979-6710998 Msa0666620:intron 20.0%
!! TAAATACTCTATAAACTATG+AGG - chr4_4:6711128-6711147 None:intergenic 20.0%
!!! TTTTATCAAGTGAAAAGTTT+AGG + chr4_4:6711678-6711697 Msa0666620:intron 20.0%
!! TTTATCAAGTGAAAAGTTTA+GGG + chr4_4:6711679-6711698 Msa0666620:intron 20.0%
!!! ATATCCATTTAGAGTATATT+CGG + chr4_4:6711799-6711818 Msa0666620:intron 20.0%
!! ATTAAGACAAATGTTATAAG+TGG + chr4_4:6711942-6711961 Msa0666620:intron 20.0%
!!! TGGCATATACATATTTTTTT+TGG - chr4_4:6711973-6711992 None:intergenic 20.0%
!!! TGATAAAAGTCTTATATCAA+AGG - chr4_4:6712168-6712187 None:intergenic 20.0%
!!! TACTATGGTTGTATTTTTAA+TGG + chr4_4:6712262-6712281 Msa0666620:intron 20.0%
!!! AAATAGAACATATTTTAAGG+GGG - chr4_4:6712441-6712460 None:intergenic 20.0%
!! AATCATATGTAATTTAGTGT+GGG - chr4_4:6712782-6712801 None:intergenic 20.0%
!! AAATCATATGTAATTTAGTG+TGG - chr4_4:6712783-6712802 None:intergenic 20.0%
!! TTTAATAATTTGCGGTCTAT+AGG - chr4_4:6708956-6708975 None:intergenic 25.0%
!! ATTGATAACCCTTTAACATT+AGG + chr4_4:6709112-6709131 Msa0666620:CDS 25.0%
! TGATTATGTCTATGATTGTT+TGG + chr4_4:6709472-6709491 Msa0666620:intron 25.0%
! TGTTAGATTTGGATTTACTA+TGG + chr4_4:6709495-6709514 Msa0666620:intron 25.0%
! TAATTGTTGCAAAATCAAGT+TGG - chr4_4:6709609-6709628 None:intergenic 25.0%
! ACAAACAAACAAACAAACAT+GGG + chr4_4:6709698-6709717 Msa0666620:intron 25.0%
!!! GTTTGACTTTCCTTTTTTTT+AGG + chr4_4:6709867-6709886 Msa0666620:intron 25.0%
! AAGATGTGTTCCTAAAAAAA+AGG - chr4_4:6709880-6709899 None:intergenic 25.0%
! CAACCACTAATAATTAAAGA+GGG - chr4_4:6709907-6709926 None:intergenic 25.0%
! ATCACAAATCAAAATCAAGA+GGG - chr4_4:6709960-6709979 None:intergenic 25.0%
! AGATTATGACATAACATAGT+AGG - chr4_4:6710107-6710126 None:intergenic 25.0%
!!! TCATTTTGCTCATTAGTTTA+TGG + chr4_4:6710188-6710207 Msa0666620:intron 25.0%
!! ATAATGCTATCAAGTATTGT+AGG + chr4_4:6710342-6710361 Msa0666620:intron 25.0%
! GGACACCAAAAAAAAAAAAA+AGG - chr4_4:6710388-6710407 None:intergenic 25.0%
!!! TTTTTTTTTTTTTGGTGTCC+AGG + chr4_4:6710388-6710407 Msa0666620:intron 25.0%
!!! TTTTTTTTTTTTGGTGTCCA+GGG + chr4_4:6710389-6710408 Msa0666620:intron 25.0%
! TAACATACAATTTCAACTCA+GGG - chr4_4:6710566-6710585 None:intergenic 25.0%
! ACAAGAAAACTTGTAAAATG+GGG - chr4_4:6710598-6710617 None:intergenic 25.0%
! CACAAGAAAACTTGTAAAAT+GGG - chr4_4:6710599-6710618 None:intergenic 25.0%
! TCACAAGAAAACTTGTAAAA+TGG - chr4_4:6710600-6710619 None:intergenic 25.0%
!! TTCACAACAAATTTTGTTAG+GGG + chr4_4:6710673-6710692 Msa0666620:intron 25.0%
!!! TACGTAGCGATATTTTTTTA+AGG - chr4_4:6710892-6710911 None:intergenic 25.0%
! TGAATAGAGATCAAATTAGT+GGG - chr4_4:6711254-6711273 None:intergenic 25.0%
! ATGAATAGAGATCAAATTAG+TGG - chr4_4:6711255-6711274 None:intergenic 25.0%
! GTTAATTGGTGCATAATAAT+CGG - chr4_4:6711489-6711508 None:intergenic 25.0%
!! CAAAGTATGCTTTTACATAT+TGG - chr4_4:6711595-6711614 None:intergenic 25.0%
!! ATCTTGATAACATGAGTAAA+AGG - chr4_4:6711716-6711735 None:intergenic 25.0%
! ATAACCGAATATACTCTAAA+TGG - chr4_4:6711806-6711825 None:intergenic 25.0%
! TCTAATATAGTTAGAACCAT+AGG - chr4_4:6712134-6712153 None:intergenic 25.0%
!! TAAGACTTTTATCAAGAAAC+TGG + chr4_4:6712174-6712193 Msa0666620:intron 25.0%
!! AAGACTTTTATCAAGAAACT+GGG + chr4_4:6712175-6712194 Msa0666620:intron 25.0%
! ATACACGTACATTATTACTA+TGG + chr4_4:6712247-6712266 Msa0666620:intron 25.0%
! TATCGTGATTATATTAGTAG+GGG - chr4_4:6712707-6712726 None:intergenic 25.0%
! GTATCGTGATTATATTAGTA+GGG - chr4_4:6712708-6712727 None:intergenic 25.0%
! TGTATCGTGATTATATTAGT+AGG - chr4_4:6712709-6712728 None:intergenic 25.0%
! AAAACTCATAAACCAATTTG+CGG + chr4_4:6712744-6712763 Msa0666620:intron 25.0%
! AAGATTAATCGTATTCATTG+CGG - chr4_4:6712859-6712878 None:intergenic 25.0%
!!! TGGTTAAATAGTTTTAACAC+CGG + chr4_4:6712993-6713012 Msa0666620:intron 25.0%
! TTTGACTATACAAAACTCAT+TGG + chr4_4:6713085-6713104 Msa0666620:intron 25.0%
! AGACATCAAAGATAAAAAGA+GGG - chr4_4:6713129-6713148 None:intergenic 25.0%
! GAACAAATTGAGAAAATGAT+GGG - chr4_4:6713246-6713265 None:intergenic 25.0%
! AGAACAAATTGAGAAAATGA+TGG - chr4_4:6713247-6713266 None:intergenic 25.0%
!!! TTAGTTTTGCTTTCTTGTTT+AGG - chr4_4:6713376-6713395 None:intergenic 25.0%
!! ATGAATTTTGCTTTCATTGA+AGG + chr4_4:6713620-6713639 Msa0666620:CDS 25.0%
!! TTCATTGAAGGAAAGTATAA+TGG + chr4_4:6713632-6713651 Msa0666620:CDS 25.0%
! TGATGATGATGTTAAAGTGA+TGG - chr4_4:6708900-6708919 None:intergenic 30.0%
!! GACTTAGTTTTTCCTTCTTT+AGG - chr4_4:6708979-6708998 None:intergenic 30.0%
TAAGTCATTTCAGATTCTAC+TGG + chr4_4:6708993-6709012 Msa0666620:CDS 30.0%
!! AGATGAAGTTGATTTGCTTA+TGG + chr4_4:6709195-6709214 Msa0666620:CDS 30.0%
! ATGAATTTTGCCTTTACTGA+AGG + chr4_4:6709220-6709239 Msa0666620:CDS 30.0%
!! TGGAAGTACACTTACTATTT+TGG + chr4_4:6709252-6709271 Msa0666620:CDS 30.0%
!! GGAAGTACACTTACTATTTT+GGG + chr4_4:6709253-6709272 Msa0666620:CDS 30.0%
!! CATTGGTTTGATATCAAAAC+CGG + chr4_4:6709370-6709389 Msa0666620:CDS 30.0%
!! ATTGGTTTGATATCAAAACC+GGG + chr4_4:6709371-6709390 Msa0666620:CDS 30.0%
!! TGATTGTTTGGTGTTAGATT+TGG + chr4_4:6709484-6709503 Msa0666620:intron 30.0%
TAGCTATATATATGGATTCG+CGG + chr4_4:6709559-6709578 Msa0666620:intron 30.0%
TGTTTGTTTGTTTGTTTGTG+TGG - chr4_4:6709697-6709716 None:intergenic 30.0%
CACAAACAAACAAACAAACA+TGG + chr4_4:6709697-6709716 Msa0666620:intron 30.0%
GTTCCCTCTTTAATTATTAG+TGG + chr4_4:6709901-6709920 Msa0666620:intron 30.0%
CCAACCACTAATAATTAAAG+AGG - chr4_4:6709908-6709927 None:intergenic 30.0%
CCTCTTTAATTATTAGTGGT+TGG + chr4_4:6709905-6709924 Msa0666620:intron 30.0%
GATCACAAATCAAAATCAAG+AGG - chr4_4:6709961-6709980 None:intergenic 30.0%
ATGAAAGTTCATAATGGCAA+AGG + chr4_4:6710221-6710240 Msa0666620:intron 30.0%
TGAAAGTTCATAATGGCAAA+GGG + chr4_4:6710222-6710241 Msa0666620:intron 30.0%
ACTATATCTTTCATGCTTTG+AGG + chr4_4:6710246-6710265 Msa0666620:intron 30.0%
! CTATCAAGTATTGTAGGTAA+TGG + chr4_4:6710348-6710367 Msa0666620:intron 30.0%
! AGTATTGTAGGTAATGGTAA+TGG + chr4_4:6710354-6710373 Msa0666620:intron 30.0%
CATAAAATATGCAAGGTCTA+GGG - chr4_4:6710421-6710440 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG - chr4_4:6710428-6710447 None:intergenic 30.0%
GTAACATACAATTTCAACTC+AGG - chr4_4:6710567-6710586 None:intergenic 30.0%
! TCACAACAAATTTTGTTAGG+GGG + chr4_4:6710674-6710693 Msa0666620:intron 30.0%
!!! AATTACTTTTTTTTGGTGGC+CGG + chr4_4:6710760-6710779 Msa0666620:intron 30.0%
GACAATGCATAAAATATGCA+AGG - chr4_4:6710428-6710447 None:intergenic 30.0%
TGAGCTTATTTCAATTGGTA+AGG - chr4_4:6710823-6710842 None:intergenic 30.0%
TACCAATTGAAATAAGCTCA+CGG + chr4_4:6710823-6710842 Msa0666620:intron 30.0%
! GTTTATCTAGGTTGAACTTT+AGG + chr4_4:6711085-6711104 Msa0666620:intron 30.0%
TAATGTGACAACGTATTTAG+TGG - chr4_4:6711171-6711190 None:intergenic 30.0%
AAACCACATTATTATGGATC+AGG + chr4_4:6711281-6711300 Msa0666620:intron 30.0%
AATCCTGATCCATAATAATG+TGG - chr4_4:6711287-6711306 None:intergenic 30.0%
ATATTCCGTATGAGGTTAAT+TGG - chr4_4:6711503-6711522 None:intergenic 30.0%
GAACATATATATTCCGTATG+AGG - chr4_4:6711511-6711530 None:intergenic 30.0%
! AGTATGCTTTTACATATTGG+AGG - chr4_4:6711592-6711611 None:intergenic 30.0%
AAATATGCTCTATGCGTAAT+TGG - chr4_4:6711864-6711883 None:intergenic 30.0%
AAGACAAATGTTATAAGTGG+TGG + chr4_4:6711945-6711964 Msa0666620:intron 30.0%
ATTGGCAAACTATACAAAAG+AGG + chr4_4:6712407-6712426 Msa0666620:intron 30.0%
AGATACAGTGTGAATGAAAT+TGG - chr4_4:6712573-6712592 None:intergenic 30.0%
! TGAATCAAGCAATCAAGTTT+TGG - chr4_4:6712620-6712639 None:intergenic 30.0%
AAACTCATAAACCAATTTGC+GGG + chr4_4:6712745-6712764 Msa0666620:intron 30.0%
GTTAACCACAAATTTAAGTG+TGG + chr4_4:6712922-6712941 Msa0666620:intron 30.0%
!!! GGTTAAATAGTTTTAACACC+GGG + chr4_4:6712994-6713013 Msa0666620:intron 30.0%
TCAAAGATAAAAAGAGGGAT+GGG - chr4_4:6713124-6713143 None:intergenic 30.0%
ATCAAAGATAAAAAGAGGGA+TGG - chr4_4:6713125-6713144 None:intergenic 30.0%
GAGACATCAAAGATAAAAAG+AGG - chr4_4:6713130-6713149 None:intergenic 30.0%
GAGAATAATGAAAAGGTGAA+AGG - chr4_4:6713162-6713181 None:intergenic 30.0%
TAAGTCACTTCAGATTCTAT+TGG + chr4_4:6713393-6713412 Msa0666620:CDS 30.0%
!!! AGATGATTTTGGTTTTCTCA+TGG + chr4_4:6713595-6713614 Msa0666620:CDS 30.0%
TGGTAGTACTATTACTATCT+TGG + chr4_4:6713652-6713671 Msa0666620:CDS 30.0%
GGTAGTACTATTACTATCTT+GGG + chr4_4:6713653-6713672 Msa0666620:CDS 30.0%
GTAGTACTATTACTATCTTG+GGG + chr4_4:6713654-6713673 Msa0666620:CDS 30.0%
GAGGAATTCTGGTATTAATA+AGG + chr4_4:6713676-6713695 Msa0666620:CDS 30.0%
ATTCTGGTATTAATAAGGCT+AGG + chr4_4:6713681-6713700 Msa0666620:CDS 30.0%
TTCTGGTATTAATAAGGCTA+GGG + chr4_4:6713682-6713701 Msa0666620:CDS 30.0%
! GAACAAAGTGATGAAGTGTT+GGG - chr4_4:6708852-6708871 None:intergenic 35.0%
AGAACAAAGTGATGAAGTGT+TGG - chr4_4:6708853-6708872 None:intergenic 35.0%
! GTTGTCGTGTTTAGTTTCAA+TGG - chr4_4:6709070-6709089 None:intergenic 35.0%
GTTCTGGTCCTAATGTTAAA+GGG - chr4_4:6709123-6709142 None:intergenic 35.0%
! AGTTCTGGTCCTAATGTTAA+AGG - chr4_4:6709124-6709143 None:intergenic 35.0%
!! GTACACTTACTATTTTGGGA+AGG + chr4_4:6709257-6709276 Msa0666620:CDS 35.0%
!!! GGATTTTTCAGATTTGCTAG+AGG + chr4_4:6709328-6709347 Msa0666620:CDS 35.0%
ATGCTGAAGCTAATACTCAT+TGG + chr4_4:6709353-6709372 Msa0666620:CDS 35.0%
! TTGGTTTGATATCAAAACCG+GGG + chr4_4:6709372-6709391 Msa0666620:CDS 35.0%
GGGATTACTCAAATTGTAGA+TGG + chr4_4:6709718-6709737 Msa0666620:intron 35.0%
GCATAAAATATGCAAGGTCT+AGG - chr4_4:6710422-6710441 None:intergenic 35.0%
AAAACTTGTAAAATGGGGAG+GGG - chr4_4:6710593-6710612 None:intergenic 35.0%
GAAAACTTGTAAAATGGGGA+GGG - chr4_4:6710594-6710613 None:intergenic 35.0%
AGAAAACTTGTAAAATGGGG+AGG - chr4_4:6710595-6710614 None:intergenic 35.0%
TTGTGATGTGATGTTGTGTT+TGG + chr4_4:6710614-6710633 Msa0666620:intron 35.0%
!!! ATTACTTTTTTTTGGTGGCC+GGG + chr4_4:6710761-6710780 Msa0666620:intron 35.0%
TGCATAAAATATGCAAGGTC+CGG - chr4_4:6710423-6710442 None:intergenic 35.0%
ACCAATTGAAATAAGCTCAC+GGG + chr4_4:6710824-6710843 Msa0666620:intron 35.0%
TATTACTACCACTGGATCAA+TGG + chr4_4:6710987-6711006 Msa0666620:intron 35.0%
ATTACTACCACTGGATCAAT+GGG + chr4_4:6710988-6711007 Msa0666620:intron 35.0%
AAGTTGAGTGTACAACTTCA+TGG + chr4_4:6711199-6711218 Msa0666620:intron 35.0%
!! AATTAGTGGGATGGATTAGT+TGG - chr4_4:6711241-6711260 None:intergenic 35.0%
TAGAGATCAAATTAGTGGGA+TGG - chr4_4:6711250-6711269 None:intergenic 35.0%
GTGCTCAAACCACATTATTA+TGG + chr4_4:6711275-6711294 Msa0666620:intron 35.0%
!! ACCATTGATTTGTGATTCGA+CGG + chr4_4:6711353-6711372 Msa0666620:intron 35.0%
ATAATAATCGGATCCGGATT+CGG - chr4_4:6711477-6711496 None:intergenic 35.0%
ATGCACCAATTAACCTCATA+CGG + chr4_4:6711495-6711514 Msa0666620:intron 35.0%
ATAGATGCTAGATGATCCTA+TGG + chr4_4:6712115-6712134 Msa0666620:intron 35.0%
! ACTAACTTGCAAAGCAAGTT+AGG - chr4_4:6712515-6712534 None:intergenic 35.0%
TACAGTGTGAATGAAATTGG+AGG - chr4_4:6712570-6712589 None:intergenic 35.0%
ACTTGATTGCTTGATTCAGA+AGG + chr4_4:6712622-6712641 Msa0666620:intron 35.0%
! TTGAAGCGCTAACAAAATTG+AGG + chr4_4:6712651-6712670 Msa0666620:intron 35.0%
! GGTTTTGCATACGTTTTTGA+AGG - chr4_4:6712686-6712705 None:intergenic 35.0%
AACTCATAAACCAATTTGCG+GGG + chr4_4:6712746-6712765 Msa0666620:intron 35.0%
GCTAACCACACTTAAATTTG+TGG - chr4_4:6712930-6712949 None:intergenic 35.0%
TAGAGAAAGTAAAGTAGTGG+AGG - chr4_4:6713199-6713218 None:intergenic 35.0%
CTGTAGAGAAAGTAAAGTAG+TGG - chr4_4:6713202-6713221 None:intergenic 35.0%
TATTGGCATGATATCTTGAG+TGG + chr4_4:6713410-6713429 Msa0666620:CDS 35.0%
ATTGGCATGATATCTTGAGT+GGG + chr4_4:6713411-6713430 Msa0666620:CDS 35.0%
GGAACAATTGTAATTGCAGT+GGG - chr4_4:6713443-6713462 None:intergenic 35.0%
TGGAACAATTGTAATTGCAG+TGG - chr4_4:6713444-6713463 None:intergenic 35.0%
! GTTGTGTTTAGCTTCAATGT+TGG - chr4_4:6713467-6713486 None:intergenic 35.0%
! CTAAACACAACCACTTCTTT+TGG + chr4_4:6713476-6713495 Msa0666620:CDS 35.0%
! TTTGATGACCCTTTGACTTT+AGG + chr4_4:6713512-6713531 Msa0666620:CDS 35.0%
ATTGTGGTCCTAAAGTCAAA+GGG - chr4_4:6713523-6713542 None:intergenic 35.0%
AATTGTGGTCCTAAAGTCAA+AGG - chr4_4:6713524-6713543 None:intergenic 35.0%
!! ACAAGCTTTGAACTCAATTG+TGG - chr4_4:6713539-6713558 None:intergenic 35.0%
CAATTGAGTTCAAAGCTTGT+TGG + chr4_4:6713539-6713558 Msa0666620:CDS 35.0%
! TCTGCATCACAAGATGATTT+TGG + chr4_4:6713584-6713603 Msa0666620:CDS 35.0%
!!! GACTTTTCAGATTTGCTAGA+GGG + chr4_4:6713729-6713748 Msa0666620:CDS 35.0%
!! CATTGGTTTGATCTCAAAAC+TGG + chr4_4:6713770-6713789 Msa0666620:CDS 35.0%
!! AAGTGATGGTGTTGCAAGAT+AGG - chr4_4:6708886-6708905 None:intergenic 40.0%
GAACAACTGCAACTGAAGTA+GGG - chr4_4:6709042-6709061 None:intergenic 40.0%
! GTGTTTAGTTTCAATGGTGG+TGG - chr4_4:6709064-6709083 None:intergenic 40.0%
! GTCGTGTTTAGTTTCAATGG+TGG - chr4_4:6709067-6709086 None:intergenic 40.0%
! CTAAACACGACAACTGCTTT+TGG + chr4_4:6709076-6709095 Msa0666620:CDS 40.0%
ACAACCTTAGAACTCAGTTC+TGG - chr4_4:6709139-6709158 None:intergenic 40.0%
!! GAACTGAGTTCTAAGGTTGT+TGG + chr4_4:6709139-6709158 Msa0666620:CDS 40.0%
AAGGTTGTTGGAAAAGCTCA+AGG + chr4_4:6709151-6709170 Msa0666620:CDS 40.0%
AGGTTGTTGGAAAAGCTCAA+GGG + chr4_4:6709152-6709171 Msa0666620:CDS 40.0%
ATACTCAACAATAGCATCCC+CGG - chr4_4:6709392-6709411 None:intergenic 40.0%
!! TTTCATGCTTTGAGGTCATG+TGG + chr4_4:6710254-6710273 Msa0666620:intron 40.0%
CATTATGCAGCAACCAATGA+TGG - chr4_4:6710328-6710347 None:intergenic 40.0%
! TGAGCATAACTCAGTTGGTA+TGG - chr4_4:6710450-6710469 None:intergenic 40.0%
CATACAATTTCAACTCAGGG+TGG - chr4_4:6710563-6710582 None:intergenic 40.0%
AAACTTGTAAAATGGGGAGG+GGG - chr4_4:6710592-6710611 None:intergenic 40.0%
TGATGTGATGTTGTGTTTGG+TGG + chr4_4:6710617-6710636 Msa0666620:intron 40.0%
!!! TTACTTTTTTTTGGTGGCCG+GGG + chr4_4:6710762-6710781 Msa0666620:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG - chr4_4:6710794-6710813 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG - chr4_4:6710795-6710814 None:intergenic 40.0%
TCCCGTGAGCTTATTTCAAT+TGG - chr4_4:6710828-6710847 None:intergenic 40.0%
ACCGTCGAATCACAAATCAA+TGG - chr4_4:6711357-6711376 None:intergenic 40.0%
TGGTGCATAATAATCGGATC+CGG - chr4_4:6711483-6711502 None:intergenic 40.0%
!! ATATTGGAGGTGTTGCTTTG+CGG - chr4_4:6711579-6711598 None:intergenic 40.0%
! TTTTGCAGAGTTGAGCAGTT+CGG + chr4_4:6711618-6711637 Msa0666620:intron 40.0%
ACTCATAAACCAATTTGCGG+GGG + chr4_4:6712747-6712766 Msa0666620:intron 40.0%
! TACTTGTGTCGTTGAACACT+TGG + chr4_4:6712970-6712989 Msa0666620:intron 40.0%
TTCGACACACGATTAATACC+CGG - chr4_4:6713015-6713034 None:intergenic 40.0%
TAAAAAGAGGGATGGGAACA+AGG - chr4_4:6713117-6713136 None:intergenic 40.0%
TGTTTAGGCCTAACAACTTG+CGG - chr4_4:6713361-6713380 None:intergenic 40.0%
! GTGTTTAGCTTCAATGTTGG+TGG - chr4_4:6713464-6713483 None:intergenic 40.0%
GTTGACTGAACCAAAAGAAG+TGG - chr4_4:6713489-6713508 None:intergenic 40.0%
!! AAGCTTGTTGGAAAAGCTCA+AGG + chr4_4:6713551-6713570 Msa0666620:CDS 40.0%
GTACTATTACTATCTTGGGG+AGG + chr4_4:6713657-6713676 Msa0666620:CDS 40.0%
!!! GGACTTTTCAGATTTGCTAG+AGG + chr4_4:6713728-6713747 Msa0666620:CDS 40.0%
ATGCTCAAGCTAGTACTCAT+TGG + chr4_4:6713753-6713772 Msa0666620:CDS 40.0%
!! TGGTGTTGCAAGATAGGAGA+AGG - chr4_4:6708880-6708899 None:intergenic 45.0%
GGAACAACTGCAACTGAAGT+AGG - chr4_4:6709043-6709062 None:intergenic 45.0%
AGGACCAGAACTGAGTTCTA+AGG + chr4_4:6709132-6709151 Msa0666620:CDS 45.0%
GTTAGAGAGATGCCTGTGAA+TGG + chr4_4:6709298-6709317 Msa0666620:intron 45.0%
AGCAACAGTCCTACCATCAT+TGG + chr4_4:6710312-6710331 Msa0666620:intron 45.0%
ATGCAGCAACCAATGATGGT+AGG - chr4_4:6710324-6710343 None:intergenic 45.0%
ACTCATACCCATTGATCCAG+TGG - chr4_4:6710998-6711017 None:intergenic 45.0%
ACAATGCGTGGGATTTCAGA+TGG - chr4_4:6711030-6711049 None:intergenic 45.0%
ACATTAGTGCGACAATGCGT+GGG - chr4_4:6711041-6711060 None:intergenic 45.0%
AACATTAGTGCGACAATGCG+TGG - chr4_4:6711042-6711061 None:intergenic 45.0%
!!! TGCGTGCTGCTTTTACAACA+GGG - chr4_4:6711310-6711329 None:intergenic 45.0%
! GCCATCGATTAGAGATCGTA+TGG + chr4_4:6711417-6711436 Msa0666620:intron 45.0%
GCCATACGATCTCTAATCGA+TGG - chr4_4:6711421-6711440 None:intergenic 45.0%
! CAGGACGCTGTAACAGATTT+TGG - chr4_4:6711443-6711462 None:intergenic 45.0%
TGCTATAACACCACCGAATC+CGG + chr4_4:6711461-6711480 Msa0666620:intron 45.0%
!! TATTGGAGGTGTTGCTTTGC+GGG - chr4_4:6711578-6711597 None:intergenic 45.0%
CTCATAAACCAATTTGCGGG+GGG + chr4_4:6712748-6712767 Msa0666620:intron 45.0%
TGTTATAACCCCCCGCAAAT+TGG - chr4_4:6712759-6712778 None:intergenic 45.0%
AATAAATTGGGGGTCGACCA+TGG + chr4_4:6712810-6712829 Msa0666620:intron 45.0%
! TTGTGTCGTTGAACACTTGG+TGG + chr4_4:6712973-6712992 Msa0666620:intron 45.0%
GGGTATTAATCGTGTGTCGA+AGG + chr4_4:6713014-6713033 Msa0666620:intron 45.0%
!! AAGTGAGAGTGTTGCAAGAG+AGG - chr4_4:6713280-6713299 None:intergenic 45.0%
CCTAACAACTTGCGGTCTAT+TGG - chr4_4:6713353-6713372 None:intergenic 45.0%
CCAATAGACCGCAAGTTGTT+AGG + chr4_4:6713350-6713369 Msa0666620:CDS 45.0%
ACTATCTTGGGGAGGAATTC+TGG + chr4_4:6713665-6713684 Msa0666620:CDS 45.0%
!! ATGCCTATTGTTGGTGGTAG+TGG + chr4_4:6713707-6713726 Msa0666620:CDS 45.0%
AGTCCACTACCACCAACAAT+AGG - chr4_4:6713713-6713732 None:intergenic 45.0%
TACTGGCACGACATAGTGAG+TGG + chr4_4:6709010-6709029 Msa0666620:intron 50.0%
AGAGAGATGCCTGTGAATGG+TGG + chr4_4:6709301-6709320 Msa0666620:intron 50.0%
AATCCACTGCCACCATTCAC+AGG - chr4_4:6709313-6709332 None:intergenic 50.0%
CCTCGTGAGCATAACTCAGT+TGG - chr4_4:6710455-6710474 None:intergenic 50.0%
CCAACTGAGTTATGCTCACG+AGG + chr4_4:6710452-6710471 Msa0666620:intron 50.0%
!!! CTGCGTGCTGCTTTTACAAC+AGG - chr4_4:6711311-6711330 None:intergenic 50.0%
!! GGATTCGGTGGTGTTATAGC+AGG - chr4_4:6711462-6711481 None:intergenic 50.0%
ATAATCGGATCCGGATTCGG+TGG - chr4_4:6711474-6711493 None:intergenic 50.0%
AGCCACTCATGGACATAGGT+GGG - chr4_4:6712836-6712855 None:intergenic 50.0%
ATTCATTGCGGAGCCACTCA+TGG - chr4_4:6712847-6712866 None:intergenic 50.0%
! GAGTGTTGCAAGAGAGGAGA+AGG - chr4_4:6713274-6713293 None:intergenic 50.0%
GCTAGGGAGATGCCTATTGT+TGG + chr4_4:6713698-6713717 Msa0666620:CDS 50.0%
AGGGAGATGCCTATTGTTGG+TGG + chr4_4:6713701-6713720 Msa0666620:CDS 50.0%
ATGCCTGTGAATGGTGGCAG+TGG + chr4_4:6709307-6709326 Msa0666620:CDS 55.0%
! AAGGTCTAGGGTTCGATCCC+TGG - chr4_4:6710409-6710428 None:intergenic 55.0%
AGCACGCAGTTTCACGCTGT+AGG + chr4_4:6711322-6711341 Msa0666620:intron 55.0%
GCACGCAGTTTCACGCTGTA+GGG + chr4_4:6711323-6711342 Msa0666620:intron 55.0%
TCATGGACATAGGTGGGCCA+TGG - chr4_4:6712830-6712849 None:intergenic 55.0%
GAGCCACTCATGGACATAGG+TGG - chr4_4:6712837-6712856 None:intergenic 55.0%
AAGGTCCGGGGTTCAAACCC+CGG - chr4_4:6710782-6710801 None:intergenic 60.0%
GGCCCACCTATGTCCATGAG+TGG + chr4_4:6712831-6712850 Msa0666620:intron 60.0%
GCGGAGCCACTCATGGACAT+AGG - chr4_4:6712840-6712859 None:intergenic 60.0%
GGTGGCCGGGGTTTGAACCC+CGG + chr4_4:6710774-6710793 Msa0666620:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 6708842 6713835 6708842 ID=Msa0666620;Name=Msa0666620
chr4_4 mRNA 6708842 6713835 6708842 ID=Msa0666620-mRNA-1;Parent=Msa0666620;Name=Msa0666620-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|0|0|4|0|379
chr4_4 exon 6708842 6709028 6708842 ID=Msa0666620-mRNA-1:exon:2186;Parent=Msa0666620-mRNA-1
chr4_4 exon 6709056 6709297 6709056 ID=Msa0666620-mRNA-1:exon:2187;Parent=Msa0666620-mRNA-1
chr4_4 exon 6709307 6709407 6709307 ID=Msa0666620-mRNA-1:exon:2188;Parent=Msa0666620-mRNA-1
chr4_4 exon 6713226 6713835 6713226 ID=Msa0666620-mRNA-1:exon:2189;Parent=Msa0666620-mRNA-1
chr4_4 CDS 6708842 6709028 6708842 ID=Msa0666620-mRNA-1:cds;Parent=Msa0666620-mRNA-1
chr4_4 CDS 6709056 6709297 6709056 ID=Msa0666620-mRNA-1:cds;Parent=Msa0666620-mRNA-1
chr4_4 CDS 6709307 6709407 6709307 ID=Msa0666620-mRNA-1:cds;Parent=Msa0666620-mRNA-1
chr4_4 CDS 6713226 6713835 6713226 ID=Msa0666620-mRNA-1:cds;Parent=Msa0666620-mRNA-1
Gene Sequence

>Msa0666620

ATGCAAACCCAACACTTCATCACTTTGTTCTTCTTCCTTCTCCTATCTTGCAACACCATCACTTTAACATCATCATCATCAGAAAATGATGACACTTTTGAATTTGTTCGTCCTATAGACCGCAAATTATTAAACCTAAAGAAGGAAAAACTAAGTCATTTCAGATTCTACTGGCACGACATAGTGATTGTTCCACCACCATTGAAACTAAACACGACAACTGCTTTTGGAACAGTTCGCATGATTGATAACCCTTTAACATTAGGACCAGAACTGAGTTCTAAGGTTGTTGGAAAAGCTCAAGGGTTCTATGCATCTGCATGCAAAGATGAAGTTGATTTGCTTATGGCTATGAATTTTGCCTTTACTGAAGGAAAATATAATGGAAGTACACTTACTATTTTGGGAAGGAATGCTGTTTTTCATAAAATGCCTGTGAATGGTGGCAGTGGATTTTTCAGATTTGCTAGAGGATATGCTGAAGCTAATACTCATTGGTTTGATATCAAAACCGGGGATGCTATTGTTGACATCACAACAATGCTTTCCCATCATTTTCTCAATTTGTTCTTCTTCCTTCTCCTCTCTTGCAACACTCTCACTTCAACTTCATTACAATCTTTAGAAAAACAAGAAACTTTTGATTTTGTTCGTCCAATAGACCGCAAGTTGTTAGGCCTAAACAAGAAAGCAAAACTAAGTCACTTCAGATTCTATTGGCATGATATCTTGAGTGGGAAAAATCCCACTGCAATTACAATTGTTCCACCAACATTGAAGCTAAACACAACCACTTCTTTTGGTTCAGTCAACATGTTTGATGACCCTTTGACTTTAGGACCACAATTGAGTTCAAAGCTTGTTGGAAAAGCTCAAGGTTTCTATGCATCTGCATCACAAGATGATTTTGGTTTTCTCATGGCTATGAATTTTGCTTTCATTGAAGGAAAGTATAATGGTAGTACTATTACTATCTTGGGGAGGAATTCTGGTATTAATAAGGCTAGGGAGATGCCTATTGTTGGTGGTAGTGGACTTTTCAGATTTGCTAGAGGGTATGCTCAAGCTAGTACTCATTGGTTTGATCTCAAAACTGGAGATGCTATTGTTGAGTACAATGTTTATGTTTTTCACTATTGA
Protein sequence

>Msa0666620

MQTQHFITLFFFLLLSCNTITLTSSSSENDDTFEFVRPIDRKLLNLKKEKLSHFRFYWHDIVIVPPPLKLNTTTAFGTVRMIDNPLTLGPELSSKVVGKAQGFYASACKDEVDLLMAMNFAFTEGKYNGSTLTILGRNAVFHKMPVNGGSGFFRFARGYAEANTHWFDIKTGDAIVDITTMLSHHFLNLFFFLLLSCNTLTSTSLQSLEKQETFDFVRPIDRKLLGLNKKAKLSHFRFYWHDILSGKNPTAITIVPPTLKLNTTTSFGSVNMFDDPLTLGPQLSSKLVGKAQGFYASASQDDFGFLMAMNFAFIEGKYNGSTITILGRNSGINKAREMPIVGGSGLFRFARGYAQASTHWFDLKTGDAIVEYNVYVFHY*