AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0666650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0666650 MtrunA17_Chr4g0005081 87.845 181 8 2 9 175 15 195 2.03e-112 324
Msa0666650 MtrunA17_Chr4g0005081 88.462 156 18 0 174 329 42 197 5.23e-100 293
Msa0666650 MtrunA17_Chr4g0005071 97.436 156 4 0 174 329 41 196 1.85e-110 319
Msa0666650 MtrunA17_Chr4g0005071 81.768 181 18 3 9 175 15 194 5.11e-101 295
Msa0666650 MtrunA17_Chr7g0259101 43.117 385 155 8 7 329 11 393 2.91e-99 298
Msa0666650 MtrunA17_Chr4g0005031 70.879 182 37 3 10 175 38 219 1.06e-89 267
Msa0666650 MtrunA17_Chr4g0005031 76.923 156 36 0 174 329 66 221 7.79e-89 265
Msa0666650 MtrunA17_Chr4g0005041 71.429 182 34 4 10 175 17 196 2.85e-89 265
Msa0666650 MtrunA17_Chr4g0005041 74.684 158 36 2 174 329 43 198 5.53e-83 249
Msa0666650 MtrunA17_Chr4g0005011 62.637 182 50 4 10 175 16 195 1.37e-75 231
Msa0666650 MtrunA17_Chr4g0005011 65.476 168 56 1 162 329 32 197 1.67e-75 230
Msa0666650 MtrunA17_Chr7g0243501 73.684 152 39 1 178 329 42 192 4.53e-73 224
Msa0666650 MtrunA17_Chr7g0243501 62.032 187 55 4 4 175 5 190 1.11e-66 207
Msa0666650 MtrunA17_Chr4g0005111 63.576 151 54 1 179 329 41 190 3.43e-67 209
Msa0666650 MtrunA17_Chr4g0005111 54.054 185 67 4 3 174 8 187 6.67e-62 195
Msa0666650 MtrunA17_Chr1g0175911 63.871 155 54 1 175 329 40 192 3.83e-65 204
Msa0666650 MtrunA17_Chr1g0175911 50.538 186 73 4 4 175 10 190 4.31e-51 167
Msa0666650 MtrunA17_Chr4g0005131 62.987 154 56 1 177 329 38 191 3.55e-63 199
Msa0666650 MtrunA17_Chr4g0005131 56.287 167 56 4 23 174 24 188 2.75e-54 176
Msa0666650 MtrunA17_Chr7g0259091 53.503 157 71 2 174 329 39 194 3.19e-54 176
Msa0666650 MtrunA17_Chr7g0259091 45.652 184 83 5 7 175 11 192 3.16e-44 150
Msa0666650 MtrunA17_Chr4g0037481 52.632 152 71 1 179 329 41 192 1.70e-53 174
Msa0666650 MtrunA17_Chr4g0037481 54.000 150 54 3 41 175 41 190 4.17e-47 157
Msa0666650 MtrunA17_Chr7g0259121 53.205 156 68 2 179 329 38 193 5.31e-52 171
Msa0666650 MtrunA17_Chr7g0259121 46.104 154 64 3 41 175 38 191 3.04e-40 140
Msa0666650 MtrunA17_Chr7g0259071 49.045 157 78 2 174 329 36 191 8.69e-51 167
Msa0666650 MtrunA17_Chr7g0259071 43.478 161 75 4 27 172 27 186 8.53e-42 144
Msa0666650 MtrunA17_Chr4g0005091 54.902 153 55 1 177 329 37 175 6.17e-50 164
Msa0666650 MtrunA17_Chr4g0005091 45.699 186 68 6 3 174 6 172 2.25e-41 142
Msa0666650 MtrunA17_Chr1g0177051 47.682 151 77 2 179 328 36 185 1.21e-43 148
Msa0666650 MtrunA17_Chr1g0177051 46.358 151 67 2 41 177 36 186 8.50e-40 138
Msa0666650 MtrunA17_Chr3g0085311 48.344 151 76 1 178 328 40 188 6.19e-43 146
Msa0666650 MtrunA17_Chr3g0085311 46.207 145 66 1 40 172 40 184 6.15e-36 128
Msa0666650 MtrunA17_Chr3g0085291 47.134 157 77 2 174 328 34 186 1.87e-42 145
Msa0666650 MtrunA17_Chr3g0085291 45.033 151 67 3 36 172 34 182 2.19e-35 127
Msa0666650 MtrunA17_Chr3g0136641 46.626 163 83 3 169 329 28 188 3.92e-41 142
Msa0666650 MtrunA17_Chr3g0136641 46.541 159 69 3 33 175 28 186 3.45e-39 137
Msa0666650 MtrunA17_Chr5g0446751 44.872 156 74 3 182 329 38 189 3.19e-40 139
Msa0666650 MtrunA17_Chr5g0446751 40.816 147 69 2 44 172 38 184 9.15e-30 112
Msa0666650 MtrunA17_Chr4g0040551 44.966 149 80 1 181 329 39 185 1.10e-39 138
Msa0666650 MtrunA17_Chr4g0040551 43.662 142 68 1 43 172 39 180 3.06e-33 121
Msa0666650 MtrunA17_Chr3g0136631 45.283 159 84 2 174 329 31 189 1.56e-39 137
Msa0666650 MtrunA17_Chr3g0136631 41.361 191 87 4 2 175 5 187 5.18e-38 134
Msa0666650 MtrunA17_Chr3g0090231 45.638 149 79 1 181 329 39 185 2.08e-39 137
Msa0666650 MtrunA17_Chr3g0090231 43.662 142 68 1 43 172 39 180 1.40e-32 119
Msa0666650 MtrunA17_Chr3g0085321 44.000 150 82 1 179 328 41 188 1.76e-37 132
Msa0666650 MtrunA17_Chr3g0085321 37.838 185 92 4 4 172 7 184 4.05e-32 118
Msa0666650 MtrunA17_Chr3g0085301 45.638 149 77 2 181 328 48 193 2.68e-35 127
Msa0666650 MtrunA17_Chr3g0085301 39.560 182 91 3 3 172 15 189 5.01e-33 121
Msa0666650 MtrunA17_Chr4g0005061 32.836 268 127 12 72 329 2 226 1.63e-25 102
Msa0666650 MtrunA17_Chr4g0068381 35.915 142 91 0 188 329 39 180 2.89e-25 100
Msa0666650 MtrunA17_Chr4g0068381 34.307 137 76 2 50 172 39 175 5.46e-19 83.2
Msa0666650 MtrunA17_Chr4g0068391 33.333 162 104 1 168 329 23 180 4.00e-22 91.7
Msa0666650 MtrunA17_Chr4g0068391 33.813 139 78 2 50 174 39 177 1.64e-16 76.3
Msa0666650 MtrunA17_Chr4g0024961 30.070 143 100 0 182 324 31 173 6.26e-17 77.4
Msa0666650 MtrunA17_Chr4g0024961 29.655 145 88 2 44 174 31 175 1.31e-11 62.4
Msa0666650 MtrunA17_Chr4g0024951 29.252 147 104 0 178 324 27 173 2.95e-16 75.5
Msa0666650 MtrunA17_Chr4g0024951 30.201 149 90 2 40 174 27 175 2.31e-12 64.7
Msa0666650 MtrunA17_Chr8g0387701 32.353 136 83 3 181 308 34 168 2.82e-13 67.4
Msa0666650 MtrunA17_Chr8g0387701 31.111 135 72 3 43 156 34 168 1.26e-11 62.8
Msa0666650 MtrunA17_Chr8g0387711 34.266 143 72 6 188 317 37 170 1.09e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0666650 AT1G58170.1 67.105 152 50 0 178 329 34 185 1.06e-72 223
Msa0666650 AT1G58170.1 53.763 186 61 4 6 175 7 183 1.96e-59 189
Msa0666650 AT1G55210.1 66.026 156 50 1 174 329 35 187 2.40e-71 219
Msa0666650 AT1G55210.1 54.054 185 70 3 3 175 4 185 6.64e-63 198
Msa0666650 AT1G55210.2 66.026 156 50 1 174 329 35 187 2.40e-71 219
Msa0666650 AT1G55210.2 54.054 185 70 3 3 175 4 185 6.64e-63 198
Msa0666650 AT5G49040.1 61.290 155 60 0 175 329 37 191 3.27e-67 209
Msa0666650 AT5G49040.1 50.265 189 80 2 1 175 1 189 9.86e-60 190
Msa0666650 AT3G13650.1 60.265 151 57 1 179 329 39 186 3.80e-62 196
Msa0666650 AT3G13650.1 48.663 187 81 4 1 175 1 184 1.09e-53 174
Msa0666650 AT5G49030.3 60.417 144 57 0 171 314 33 176 5.03e-52 185
Msa0666650 AT5G49030.3 49.718 177 75 2 1 163 1 177 2.44e-47 171
Msa0666650 AT3G13662.1 58.451 142 56 1 175 316 34 172 8.15e-52 169
Msa0666650 AT3G13662.1 49.660 147 61 2 30 164 27 172 2.20e-41 142
Msa0666650 AT1G65870.1 51.656 151 73 0 178 328 39 189 2.04e-51 169
Msa0666650 AT1G65870.1 47.651 149 64 2 40 174 39 187 9.36e-42 144
Msa0666650 AT2G21100.1 50.336 149 74 0 180 328 39 187 8.84e-51 167
Msa0666650 AT2G21100.1 47.973 148 63 2 42 175 39 186 9.72e-42 144
Msa0666650 AT2G21100.2 50.336 149 74 0 180 328 39 187 8.84e-51 167
Msa0666650 AT2G21100.2 47.973 148 63 2 42 175 39 186 9.72e-42 144
Msa0666650 AT3G13660.1 64.407 118 42 0 212 329 8 125 9.12e-49 160
Msa0666650 AT3G13660.1 54.310 116 39 2 74 175 8 123 5.62e-35 124
Msa0666650 AT5G42500.1 45.238 168 82 2 161 328 28 185 8.82e-46 154
Msa0666650 AT5G42500.1 45.638 149 63 4 41 174 38 183 1.46e-35 127
Msa0666650 AT1G22900.1 49.007 151 75 1 178 328 45 193 2.35e-45 153
Msa0666650 AT1G22900.1 45.638 149 65 3 40 174 45 191 8.10e-36 128
Msa0666650 AT5G42510.1 47.333 150 77 1 179 328 35 182 1.86e-44 150
Msa0666650 AT5G42510.1 45.638 149 63 4 41 174 35 180 7.04e-37 131
Msa0666650 AT3G58090.1 51.818 110 53 0 219 328 162 271 1.30e-35 130
Msa0666650 AT3G58090.1 46.296 108 46 1 79 174 162 269 1.29e-26 106
Msa0666650 AT4G38700.1 41.667 156 85 3 180 329 35 190 8.35e-34 123
Msa0666650 AT4G38700.1 42.105 152 64 4 42 171 35 184 2.32e-30 114
Msa0666650 AT2G21110.1 37.419 155 93 1 179 329 32 186 9.84e-33 120
Msa0666650 AT2G21110.1 36.527 167 82 4 26 174 23 183 2.65e-27 106
Msa0666650 AT4G23690.1 34.109 129 70 2 39 152 34 162 1.30e-13 68.9
Msa0666650 AT4G11210.1 28.402 169 101 2 3 160 7 166 8.83e-13 66.2
Msa0666650 AT4G11210.1 30.263 152 97 4 167 312 18 166 9.16e-12 63.5
Msa0666650 AT1G64160.1 31.967 122 76 3 185 302 37 155 7.99e-11 60.8

Find 65 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCGGGTCCTAAAGTTAA+AGG 0.186513 4_4:-6770266 None:intergenic
AGTTCTGGTCCTAAAGTTAA+AGG 0.191161 4_4:-6765352 None:intergenic
CATTGGATTGATTACAAAAC+TGG 0.220000 4_4:+6765601 Msa0666650:CDS
ATTGACAACCCTTTAACTTT+AGG 0.265955 4_4:+6765343 Msa0666650:CDS
ATTGACAACCCTTTAACTTT+AGG 0.265955 4_4:+6770257 Msa0666650:CDS
TTCATTGAAGGAAAGTATAA+TGG 0.275934 4_4:+6765463 Msa0666650:intron
TTCATTGAAGGAAAGTATAA+TGG 0.275934 4_4:+6770377 Msa0666650:CDS
TCTGCTTCACAAGAAGAAAT+AGG 0.302577 4_4:+6765415 Msa0666650:CDS
CATCTCCCTAACCTTATTAA+TGG 0.302823 4_4:-6765518 None:intergenic
TCTGCTTCACAGGAAGAAAT+AGG 0.312713 4_4:+6770329 Msa0666650:CDS
TAAGTCATTTCAAATTATAT+TGG 0.313865 4_4:+6770138 Msa0666650:CDS
CCAATAGATCGCAAGTTGTT+AGG 0.329140 4_4:+6765181 Msa0666650:CDS
CCTAACAACTTGCGATCTAT+TGG 0.333660 4_4:-6765181 None:intergenic
GTAAACTCAACCACTGCTTT+TGG 0.339769 4_4:+6765307 Msa0666650:CDS
AACAAGTTTAGAACTCAATT+CGG 0.349877 4_4:-6770282 None:intergenic
TAAGTCATTTCAGATTCTAT+TGG 0.351815 4_4:+6765224 Msa0666650:CDS
GGGAGTACTATTACTATCTT+GGG 0.365410 4_4:+6770398 Msa0666650:CDS
TGGGAGTACTATTACTATCT+TGG 0.368563 4_4:+6770397 Msa0666650:CDS
GAGGAATCATGCTCGTAATA+AGG 0.371557 4_4:+6770421 Msa0666650:CDS
GAGGAATCCTGCCATTAATA+AGG 0.372389 4_4:+6765507 Msa0666650:CDS
ATGCCTGTTGTTGGTGGTAG+TGG 0.375988 4_4:+6765538 Msa0666650:CDS
ATGCCTGTTGTTGGTGGTAG+TGG 0.375988 4_4:+6770452 Msa0666650:CDS
GAACTGAGTTCTAAACTTGT+TGG 0.385159 4_4:+6765370 Msa0666650:CDS
CCAATAGATCGCAAGTTGTT+AGG 0.388446 4_4:+6770095 Msa0666650:intron
GGGAGTACTCTTACTATTGT+AGG 0.399599 4_4:+6765484 Msa0666650:CDS
CATTGGATTGATGCCAAAGC+TGG 0.410820 4_4:+6770515 Msa0666650:CDS
GTTCTGGTCCTAAAGTTAAA+GGG 0.426776 4_4:-6765351 None:intergenic
ACAAGTTTAGAACTCAGTTC+TGG 0.427865 4_4:-6765367 None:intergenic
TATTGGCATGACATAGTTAG+TGG 0.428044 4_4:+6770155 Msa0666650:CDS
GGAACAATTGCAACCGAAGT+TGG 0.428664 4_4:-6765271 None:intergenic
GGAACAATTGCAACCGAAGT+TGG 0.428664 4_4:-6770185 None:intergenic
TCATTGAAGGAAAGTATAAT+GGG 0.435892 4_4:+6765464 Msa0666650:intron
TCATTGAAGGAAAGTATAAT+GGG 0.435892 4_4:+6770378 Msa0666650:CDS
ATTCGGGTCCTAAAGTTAAA+GGG 0.441542 4_4:-6770265 None:intergenic
ATCATGCTCGTAATAAGGTT+AGG 0.442060 4_4:+6770426 Msa0666650:CDS
AACACAAGCATCCCCAGCTT+TGG 0.447090 4_4:-6770528 None:intergenic
ATGCTCAAGCTAATACTCAT+TGG 0.456460 4_4:+6765584 Msa0666650:CDS
ATGCTCAAGCTAGTACTCAT+TGG 0.460522 4_4:+6770498 Msa0666650:CDS
GAATTGAGTTCTAAACTTGT+TGG 0.460969 4_4:+6770284 Msa0666650:CDS
TCCCTAACCTTATTAATGGC+AGG 0.465870 4_4:-6765514 None:intergenic
AAACTTGTTGGAAGAGCTCA+AGG 0.474626 4_4:+6765382 Msa0666650:CDS
AAACTTGTTGGTAGAGCTCA+AGG 0.477359 4_4:+6770296 Msa0666650:CDS
ACAAGTTTAGAACTCAATTC+GGG 0.477778 4_4:-6770281 None:intergenic
ATCCTGCCATTAATAAGGTT+AGG 0.495140 4_4:+6765512 Msa0666650:CDS
TCCTGCCATTAATAAGGTTA+GGG 0.498540 4_4:+6765513 Msa0666650:CDS
GTTAGGGAGATGCCTGTTGT+TGG 0.505285 4_4:+6765529 Msa0666650:CDS
GTTAGGGAGATGCCTGTTGT+TGG 0.505285 4_4:+6770443 Msa0666650:CDS
TCATGCTCGTAATAAGGTTA+GGG 0.511498 4_4:+6770427 Msa0666650:CDS
AGTCCACTACCACCAACAAC+AGG 0.512977 4_4:-6765541 None:intergenic
AGTCCACTACCACCAACAAC+AGG 0.512977 4_4:-6770455 None:intergenic
ATTGGATTGATGCCAAAGCT+GGG 0.519261 4_4:+6770516 Msa0666650:CDS
AGGGAGATGCCTGTTGTTGG+TGG 0.521357 4_4:+6765532 Msa0666650:CDS
AGGGAGATGCCTGTTGTTGG+TGG 0.521357 4_4:+6770446 Msa0666650:CDS
GGAGTACTCTTACTATTGTA+GGG 0.530187 4_4:+6765485 Msa0666650:CDS
TATTGGCATGATATCTTGAG+TGG 0.535975 4_4:+6765241 Msa0666650:CDS
ATTGGATTGATTACAAAACT+GGG 0.578974 4_4:+6765602 Msa0666650:CDS
GTTGTTAGGCCTAAACAAGA+AGG 0.591926 4_4:+6770109 Msa0666650:intron
GTGTGTTGCAAGATATGAGA+AGG 0.624292 4_4:-6765108 None:intergenic
GTTGACTAAACCAAAAGCAG+TGG 0.670239 4_4:-6765317 None:intergenic
GTACTATTACTATCTTGGGG+AGG 0.673978 4_4:+6770402 Msa0666650:CDS
TTGGATTGATTACAAAACTG+GGG 0.674847 4_4:+6765603 Msa0666650:CDS
GTACTCTTACTATTGTAGGG+AGG 0.687219 4_4:+6765488 Msa0666650:CDS
AACTTGTTGGAAGAGCTCAA+GGG 0.691566 4_4:+6765383 Msa0666650:CDS
GGAGTACTATTACTATCTTG+GGG 0.700411 4_4:+6770399 Msa0666650:CDS
TTGGATTGATGCCAAAGCTG+GGG 0.710618 4_4:+6770517 Msa0666650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTTTTTTTTTTTTAA+AGG - chr4_4:6766630-6766649 None:intergenic 0.0%
!! ATATATATATATATATATAA+TGG + chr4_4:6769636-6769655 Msa0666650:intron 0.0%
!! CAATATAGAAATATTATATT+AGG + chr4_4:6766714-6766733 Msa0666650:intron 10.0%
!!! AAAAAATCTATTTTTAACAT+TGG + chr4_4:6766796-6766815 Msa0666650:intron 10.0%
!! TAAAAAAATATAATCAAAGT+TGG + chr4_4:6768452-6768471 Msa0666650:intron 10.0%
!! TAAAAAGTTAACATAAAAAA+TGG + chr4_4:6768649-6768668 Msa0666650:intron 10.0%
!!! TTTCTAATTCTATTATTTTT+TGG - chr4_4:6769792-6769811 None:intergenic 10.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr4_4:6766042-6766061 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr4_4:6766043-6766062 None:intergenic 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG - chr4_4:6766107-6766126 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG - chr4_4:6766108-6766127 None:intergenic 15.0%
!! ATAGAAAAAATATGTAACTA+GGG + chr4_4:6766189-6766208 Msa0666650:intron 15.0%
!!! CCTTTTTATAATAATTACAT+CGG - chr4_4:6766653-6766672 None:intergenic 15.0%
!! AATATATCTAATTCAAAAAC+AGG - chr4_4:6769747-6769766 None:intergenic 15.0%
!! TAAGTCATTTCAAATTATAT+TGG + chr4_4:6770138-6770157 Msa0666650:CDS 15.0%
!!! TCGAACAACAATTTTTTTAA+TGG - chr4_4:6765693-6765712 None:intergenic 20.0%
!! GCTAAATAATTCATTCAAAT+TGG - chr4_4:6765818-6765837 None:intergenic 20.0%
!!! AAACTTAACTTTTTTTGAAG+AGG - chr4_4:6765840-6765859 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr4_4:6765973-6765992 None:intergenic 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG - chr4_4:6766009-6766028 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG - chr4_4:6766010-6766029 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr4_4:6766083-6766102 None:intergenic 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG - chr4_4:6766106-6766125 None:intergenic 20.0%
!! CATAGAAAAAATATGTAACT+AGG + chr4_4:6766188-6766207 Msa0666650:intron 20.0%
!! TGCAAACAAAACAAAAATTA+GGG - chr4_4:6766228-6766247 None:intergenic 20.0%
!! TTGCAAACAAAACAAAAATT+AGG - chr4_4:6766229-6766248 None:intergenic 20.0%
!!! TATGTTTTTTCTCATTGTTA+TGG + chr4_4:6766590-6766609 Msa0666650:intron 20.0%
!! CCGATGTAATTATTATAAAA+AGG + chr4_4:6766650-6766669 Msa0666650:intron 20.0%
!!! TCTTTCTATTTTTTAAGCAA+TGG - chr4_4:6766883-6766902 None:intergenic 20.0%
!!! ATATAGACTCTTTTTTTTGA+AGG - chr4_4:6766934-6766953 None:intergenic 20.0%
!! CTACGATATTTAATGATATA+TGG + chr4_4:6766964-6766983 Msa0666650:intron 20.0%
!!! TAATTTTGGAGATCTATAAA+AGG + chr4_4:6767228-6767247 Msa0666650:intron 20.0%
!!! AATTTTGGAGATCTATAAAA+GGG + chr4_4:6767229-6767248 Msa0666650:intron 20.0%
!!! TACTAACGATATCTAAAATT+GGG - chr4_4:6767952-6767971 None:intergenic 20.0%
!!! ATACTAACGATATCTAAAAT+TGG - chr4_4:6767953-6767972 None:intergenic 20.0%
!!! TTTTGCAAATAGATGATTAT+AGG - chr4_4:6768401-6768420 None:intergenic 20.0%
!! CTCTACAAATCTAAATTTAT+TGG - chr4_4:6768800-6768819 None:intergenic 20.0%
!! ACAAAGTTATAACTAAAAAG+TGG + chr4_4:6769486-6769505 Msa0666650:intron 20.0%
! TAAGTCATTTCAGATTCTAT+TGG + chr4_4:6765224-6765243 Msa0666650:CDS 25.0%
!! ATGAATTTTGCTTTCATTGA+AGG + chr4_4:6765451-6765470 Msa0666650:intron 25.0%
!! TTCATTGAAGGAAAGTATAA+TGG + chr4_4:6765463-6765482 Msa0666650:intron 25.0%
!! TCATTGAAGGAAAGTATAAT+GGG + chr4_4:6765464-6765483 Msa0666650:intron 25.0%
! ATTGGATTGATTACAAAACT+GGG + chr4_4:6765602-6765621 Msa0666650:CDS 25.0%
! ACAATCAATAGTGAAAAACA+TGG - chr4_4:6765651-6765670 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr4_4:6765974-6765993 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr4_4:6766084-6766103 None:intergenic 25.0%
! TTTGCAAACGTGATATATTA+TGG + chr4_4:6766242-6766261 Msa0666650:intron 25.0%
! TTGCAAACGTGATATATTAT+GGG + chr4_4:6766243-6766262 Msa0666650:intron 25.0%
! GAAAAAACATAATCCTACAT+AGG - chr4_4:6766581-6766600 None:intergenic 25.0%
!!! TTTTTTGAAGGATTGTTGTT+TGG - chr4_4:6766922-6766941 None:intergenic 25.0%
! TGTAAGATTTCATATGTCAT+TGG - chr4_4:6767017-6767036 None:intergenic 25.0%
!!! TTCCTGAAAAAGTGTAATTT+TGG + chr4_4:6767214-6767233 Msa0666650:intron 25.0%
!!! ATTTTGGAGATCTATAAAAG+GGG + chr4_4:6767230-6767249 Msa0666650:intron 25.0%
! AGTTGATCAATTGTATTCAA+AGG - chr4_4:6767500-6767519 None:intergenic 25.0%
!!! TTGATCAACTTAGCTTTATT+CGG + chr4_4:6767510-6767529 Msa0666650:intron 25.0%
!!! GAATGTTCATAAGTTGATTT+AGG + chr4_4:6767568-6767587 Msa0666650:intron 25.0%
!!! TTCTTTGCTACTTTGTAATT+GGG - chr4_4:6767837-6767856 None:intergenic 25.0%
!! GACATAATCACATTTCTTTT+TGG + chr4_4:6767873-6767892 Msa0666650:intron 25.0%
!! ACTAACGATATCTAAAATTG+GGG - chr4_4:6767951-6767970 None:intergenic 25.0%
! AACAATCAATGTTAGTTGTT+AGG - chr4_4:6768286-6768305 None:intergenic 25.0%
!!! CTAAATCACTCATTTTAGAA+TGG - chr4_4:6768335-6768354 None:intergenic 25.0%
! CAAATTCACAACAATATTTC+AGG - chr4_4:6768757-6768776 None:intergenic 25.0%
! ATTTAGATTTGTAGAGCAAT+AGG + chr4_4:6768804-6768823 Msa0666650:intron 25.0%
!! GCTTAAAGTTACTTTGATAT+TGG - chr4_4:6768840-6768859 None:intergenic 25.0%
! TTAACGAGTTCTTTATAAAG+AGG + chr4_4:6769020-6769039 Msa0666650:intron 25.0%
!!! TAGAAATTAGGTTTTGTTCT+TGG - chr4_4:6769084-6769103 None:intergenic 25.0%
! GAAACATTTGTAAACATCTA+GGG - chr4_4:6769157-6769176 None:intergenic 25.0%
!! AATCAAAGGAGGTAATTTTA+GGG - chr4_4:6769215-6769234 None:intergenic 25.0%
!! AAATCAAAGGAGGTAATTTT+AGG - chr4_4:6769216-6769235 None:intergenic 25.0%
!! ACACCAACTAATTTTTATGA+AGG + chr4_4:6769454-6769473 Msa0666650:intron 25.0%
! ACACCTTCATAAAAATTAGT+TGG - chr4_4:6769460-6769479 None:intergenic 25.0%
! TTGCTAAAAAAACATCTTCA+TGG + chr4_4:6769531-6769550 Msa0666650:intron 25.0%
! AAAAAGGGAAAAAGGAAAAA+AGG - chr4_4:6769839-6769858 None:intergenic 25.0%
!! AAAATGTTGATATGCTACTT+TGG - chr4_4:6769963-6769982 None:intergenic 25.0%
!! AACAAGTTTAGAACTCAATT+CGG - chr4_4:6770285-6770304 None:intergenic 25.0%
!! ATGAATTTTGCTTTCATTGA+AGG + chr4_4:6765451-6765470 Msa0666650:intron 25.0%
!! TTCATTGAAGGAAAGTATAA+TGG + chr4_4:6765463-6765482 Msa0666650:intron 25.0%
!! TCATTGAAGGAAAGTATAAT+GGG + chr4_4:6765464-6765483 Msa0666650:intron 25.0%
!! GTTGAGTTTACTTTTGATGA+TGG - chr4_4:6765298-6765317 None:intergenic 30.0%
! ATTGACAACCCTTTAACTTT+AGG + chr4_4:6765343-6765362 Msa0666650:CDS 30.0%
CATTGGATTGATTACAAAAC+TGG + chr4_4:6765601-6765620 Msa0666650:CDS 30.0%
TTGGATTGATTACAAAACTG+GGG + chr4_4:6765603-6765622 Msa0666650:CDS 30.0%
!!! ATTTTAGAATCCACTTGTGT+TGG + chr4_4:6765722-6765741 Msa0666650:intron 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG - chr4_4:6765995-6766014 None:intergenic 30.0%
! TTGAAATGGGTCAGTTATTT+TGG - chr4_4:6765996-6766015 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG - chr4_4:6766099-6766118 None:intergenic 30.0%
TCTGTGTAAAAAACCAAAGT+AGG + chr4_4:6766129-6766148 Msa0666650:intron 30.0%
TGGTCGGTATTAATTTAGAA+AGG - chr4_4:6766391-6766410 None:intergenic 30.0%
AAACATAATCCTACATAGGA+AGG - chr4_4:6766577-6766596 None:intergenic 30.0%
TGAGACACCAATGTTTAATT+CGG + chr4_4:6767056-6767075 Msa0666650:intron 30.0%
! GTGAAAAATGTAATTTTGCG+AGG + chr4_4:6767090-6767109 Msa0666650:intron 30.0%
!!! ATTACACTTTTTCAGGAAGT+GGG - chr4_4:6767212-6767231 None:intergenic 30.0%
!!! AATTACACTTTTTCAGGAAG+TGG - chr4_4:6767213-6767232 None:intergenic 30.0%
!!! CTCCAAAATTACACTTTTTC+AGG - chr4_4:6767219-6767238 None:intergenic 30.0%
!!! GTACCTAGGTTTGTTTTAAT+AGG + chr4_4:6767424-6767443 Msa0666650:intron 30.0%
TGACCTATTAAAACAAACCT+AGG - chr4_4:6767430-6767449 None:intergenic 30.0%
AAAGGCAACTTAACATACTA+GGG - chr4_4:6767482-6767501 None:intergenic 30.0%
TTAGGTTTCGATGACTATTA+TGG + chr4_4:6767586-6767605 Msa0666650:intron 30.0%
TAGGTTTCGATGACTATTAT+GGG + chr4_4:6767587-6767606 Msa0666650:intron 30.0%
! AGACTCATCTAAGACATTAT+GGG + chr4_4:6767712-6767731 Msa0666650:intron 30.0%
ATTAAGCACCAAGACATATT+GGG + chr4_4:6767754-6767773 Msa0666650:intron 30.0%
!! CTTCTTTGCTACTTTGTAAT+TGG - chr4_4:6767838-6767857 None:intergenic 30.0%
TTACAAAGTAGCAAAGAAGA+AGG + chr4_4:6767839-6767858 Msa0666650:intron 30.0%
TACAAAGTAGCAAAGAAGAA+GGG + chr4_4:6767840-6767859 Msa0666650:intron 30.0%
TGAAATTGAAGCAATACTTG+TGG + chr4_4:6767989-6768008 Msa0666650:intron 30.0%
AGTAAAAGACGAAAGTGATA+AGG + chr4_4:6768235-6768254 Msa0666650:intron 30.0%
GTAAAAGACGAAAGTGATAA+GGG + chr4_4:6768236-6768255 Msa0666650:intron 30.0%
AATCAATGTTAGTTGTTAGG+AGG - chr4_4:6768283-6768302 None:intergenic 30.0%
!!! AATCACTCATTTTAGAATGG+AGG - chr4_4:6768332-6768351 None:intergenic 30.0%
GGTTACGAAAATAATACACA+CGG + chr4_4:6768473-6768492 Msa0666650:intron 30.0%
!!! CTTCGTTTGTTTTAATTGCT+GGG - chr4_4:6768535-6768554 None:intergenic 30.0%
!!! TCTTCGTTTGTTTTAATTGC+TGG - chr4_4:6768536-6768555 None:intergenic 30.0%
! TTAAAACAAACGAAGAGTAC+AGG + chr4_4:6768540-6768559 Msa0666650:intron 30.0%
!!! ACAGGAATTTTAACTTCTGA+AGG + chr4_4:6768558-6768577 Msa0666650:intron 30.0%
!!! CAGGAATTTTAACTTCTGAA+GGG + chr4_4:6768559-6768578 Msa0666650:intron 30.0%
! TCTTTTCCCTTTTCAGATTT+TGG + chr4_4:6768707-6768726 Msa0666650:intron 30.0%
! TTTTACAATGAACAGGATCA+TGG - chr4_4:6768734-6768753 None:intergenic 30.0%
!!! TTTCAGGTTTTACAATGAAC+AGG - chr4_4:6768741-6768760 None:intergenic 30.0%
CAAACTGGGTAAATATTTCT+TGG - chr4_4:6768950-6768969 None:intergenic 30.0%
AACTCGTTAATAGTTGATTG+GGG - chr4_4:6769010-6769029 None:intergenic 30.0%
GAACTCGTTAATAGTTGATT+GGG - chr4_4:6769011-6769030 None:intergenic 30.0%
AGAACTCGTTAATAGTTGAT+TGG - chr4_4:6769012-6769031 None:intergenic 30.0%
TTGGGAAAAAGGTAGAAATT+AGG - chr4_4:6769096-6769115 None:intergenic 30.0%
GGAAACATTTGTAAACATCT+AGG - chr4_4:6769158-6769177 None:intergenic 30.0%
! AGACAAACTCTAGAAATCAA+AGG - chr4_4:6769229-6769248 None:intergenic 30.0%
CTTTAGATCAATCTTTAGCA+TGG - chr4_4:6769288-6769307 None:intergenic 30.0%
CATGCTAAAGATTGATCTAA+AGG + chr4_4:6769286-6769305 Msa0666650:intron 30.0%
AAAGTGGAAATCACACATTA+AGG + chr4_4:6769502-6769521 Msa0666650:intron 30.0%
! TGATGGACAAATATAAAGAG+AGG - chr4_4:6769872-6769891 None:intergenic 30.0%
AATGAAGTGAAGTGAAATGA+AGG - chr4_4:6769895-6769914 None:intergenic 30.0%
!! TTAGCTTTTCCTTCTTGTTT+AGG - chr4_4:6770121-6770140 None:intergenic 30.0%
TAGTGGAAAAAATCCAACTT+CGG + chr4_4:6770172-6770191 Msa0666650:CDS 30.0%
!! GTTGAGTTTACTTTTGATGA+TGG - chr4_4:6765298-6765317 None:intergenic 30.0%
!!! GTAAACTCAACCACTTTTTT+TGG + chr4_4:6770221-6770240 Msa0666650:CDS 30.0%
! ATTGACAACCCTTTAACTTT+AGG + chr4_4:6765343-6765362 Msa0666650:CDS 30.0%
! ACAAGTTTAGAACTCAATTC+GGG - chr4_4:6770284-6770303 None:intergenic 30.0%
!! GAATTGAGTTCTAAACTTGT+TGG + chr4_4:6770284-6770303 Msa0666650:CDS 30.0%
TATTGGCATGATATCTTGAG+TGG + chr4_4:6765241-6765260 Msa0666650:CDS 35.0%
GAGTGGAAAAAATCCAACTT+CGG + chr4_4:6765258-6765277 Msa0666650:CDS 35.0%
!!! GAGTTTACTTTTGATGATGG+TGG - chr4_4:6765295-6765314 None:intergenic 35.0%
GTTCTGGTCCTAAAGTTAAA+GGG - chr4_4:6765354-6765373 None:intergenic 35.0%
! AGTTCTGGTCCTAAAGTTAA+AGG - chr4_4:6765355-6765374 None:intergenic 35.0%
! ACAAGTTTAGAACTCAGTTC+TGG - chr4_4:6765370-6765389 None:intergenic 35.0%
!! GAACTGAGTTCTAAACTTGT+TGG + chr4_4:6765370-6765389 Msa0666650:CDS 35.0%
TCTGCTTCACAAGAAGAAAT+AGG + chr4_4:6765415-6765434 Msa0666650:CDS 35.0%
! GGAGTACTCTTACTATTGTA+GGG + chr4_4:6765485-6765504 Msa0666650:CDS 35.0%
ATCCTGCCATTAATAAGGTT+AGG + chr4_4:6765512-6765531 Msa0666650:CDS 35.0%
TCCTGCCATTAATAAGGTTA+GGG + chr4_4:6765513-6765532 Msa0666650:CDS 35.0%
CATCTCCCTAACCTTATTAA+TGG - chr4_4:6765521-6765540 None:intergenic 35.0%
ATGCTCAAGCTAATACTCAT+TGG + chr4_4:6765584-6765603 Msa0666650:CDS 35.0%
!! TGGTTTGGTGGTATTAACTT+TGG + chr4_4:6765742-6765761 Msa0666650:intron 35.0%
TCTAGAGAGAATTGAATCTG+AGG - chr4_4:6765794-6765813 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr4_4:6765960-6765979 None:intergenic 35.0%
CCAAAGTAGGTCAATTATAC+CGG + chr4_4:6766142-6766161 Msa0666650:intron 35.0%
CGTGATATATTATGGGAGAA+TGG + chr4_4:6766250-6766269 Msa0666650:intron 35.0%
TATGGGAGAATGGAATTACA+AGG + chr4_4:6766260-6766279 Msa0666650:intron 35.0%
CACTTGTAATTCCATTCTCT+TGG - chr4_4:6766358-6766377 None:intergenic 35.0%
!! AAAAAAGCACCAAGTCTTTG+TGG - chr4_4:6766438-6766457 None:intergenic 35.0%
!! AAGGAATAGGTTGGTTGAAT+GGG - chr4_4:6766558-6766577 None:intergenic 35.0%
AATCCTACATAGGAAGGAAT+AGG - chr4_4:6766571-6766590 None:intergenic 35.0%
TTGTGAGCCGAATTAAACAT+TGG - chr4_4:6767066-6767085 None:intergenic 35.0%
TGTTTAATTCGGCTCACAAA+AGG + chr4_4:6767067-6767086 Msa0666650:intron 35.0%
GTTTAATTCGGCTCACAAAA+GGG + chr4_4:6767068-6767087 Msa0666650:intron 35.0%
! AATGTAATTTTGCGAGGTAG+AGG + chr4_4:6767096-6767115 Msa0666650:intron 35.0%
!! GTATTTGTCGACTCTTAACT+AGG - chr4_4:6767267-6767286 None:intergenic 35.0%
AGTCGACAAATACACATGAA+AGG + chr4_4:6767274-6767293 Msa0666650:intron 35.0%
GTCGACAAATACACATGAAA+GGG + chr4_4:6767275-6767294 Msa0666650:intron 35.0%
TCTTCTGATTATGAGTACCT+AGG + chr4_4:6767410-6767429 Msa0666650:intron 35.0%
CAAAGGCAACTTAACATACT+AGG - chr4_4:6767483-6767502 None:intergenic 35.0%
ATGTGCATTCAAACCTTCAA+TGG + chr4_4:6767685-6767704 Msa0666650:intron 35.0%
! CAGACTCATCTAAGACATTA+TGG + chr4_4:6767711-6767730 Msa0666650:intron 35.0%
!!! TGGTGCTTAATCAGCTTTTT+TGG - chr4_4:6767745-6767764 None:intergenic 35.0%
GATTAAGCACCAAGACATAT+TGG + chr4_4:6767753-6767772 Msa0666650:intron 35.0%
! TATTCGAGTTTGGCTTAGTT+CGG - chr4_4:6768178-6768197 None:intergenic 35.0%
CTAGGGTTAGAAAATGAGTT+GGG - chr4_4:6768203-6768222 None:intergenic 35.0%
ACTAGGGTTAGAAAATGAGT+TGG - chr4_4:6768204-6768223 None:intergenic 35.0%
! ACTCATTTTCTAACCCTAGT+TGG + chr4_4:6768204-6768223 Msa0666650:intron 35.0%
! TTACTCTTTTGCTCCAACTA+GGG - chr4_4:6768220-6768239 None:intergenic 35.0%
! TTTACTCTTTTGCTCCAACT+AGG - chr4_4:6768221-6768240 None:intergenic 35.0%
! CTGAAAAGGGAAAAGACTTT+TGG - chr4_4:6768703-6768722 None:intergenic 35.0%
CATGGACCAAAATCTGAAAA+GGG - chr4_4:6768716-6768735 None:intergenic 35.0%
TCATGGACCAAAATCTGAAA+AGG - chr4_4:6768717-6768736 None:intergenic 35.0%
ATCAATCTGTCCTTCATAGT+AGG - chr4_4:6768985-6769004 None:intergenic 35.0%
!! TCATTGAGTCATTGGTTCTT+GGG - chr4_4:6769125-6769144 None:intergenic 35.0%
!! ATCATTGAGTCATTGGTTCT+TGG - chr4_4:6769126-6769145 None:intergenic 35.0%
GAGTGAAATCATTGAGTCAT+TGG - chr4_4:6769133-6769152 None:intergenic 35.0%
! CAAACTCTAGAAATCAAAGG+AGG - chr4_4:6769226-6769245 None:intergenic 35.0%
GGAAAAAGGAAAAAAGGAGT+GGG - chr4_4:6769833-6769852 None:intergenic 35.0%
AGTGAACGAAAAAGGGAAAA+AGG - chr4_4:6769847-6769866 None:intergenic 35.0%
AGAGGAAAGTGAACGAAAAA+GGG - chr4_4:6769854-6769873 None:intergenic 35.0%
GAGAGGAAGAATAATAATGG+AGG - chr4_4:6769921-6769940 None:intergenic 35.0%
GAGGAGAGGAAGAATAATAA+TGG - chr4_4:6769924-6769943 None:intergenic 35.0%
! CTTTGGAGATAGTAAAGTAG+TGG - chr4_4:6769946-6769965 None:intergenic 35.0%
GAAATGTTTGGAAGACATTG+TGG - chr4_4:6769988-6770007 None:intergenic 35.0%
GAACAAAGTGAGGAAATGTT+TGG - chr4_4:6770000-6770019 None:intergenic 35.0%
TATTGGCATGACATAGTTAG+TGG + chr4_4:6770155-6770174 Msa0666650:CDS 35.0%
!!! GAGTTTACTTTTGATGATGG+TGG - chr4_4:6765295-6765314 None:intergenic 35.0%
GCTGACTAAACCAAAAAAAG+TGG - chr4_4:6770234-6770253 None:intergenic 35.0%
ATTCGGGTCCTAAAGTTAAA+GGG - chr4_4:6770268-6770287 None:intergenic 35.0%
AATTCGGGTCCTAAAGTTAA+AGG - chr4_4:6770269-6770288 None:intergenic 35.0%
! ATTTTATGCATCTGCTTCAC+AGG + chr4_4:6770319-6770338 Msa0666650:CDS 35.0%
!! TGGGAGTACTATTACTATCT+TGG + chr4_4:6770397-6770416 Msa0666650:CDS 35.0%
!! GGGAGTACTATTACTATCTT+GGG + chr4_4:6770398-6770417 Msa0666650:CDS 35.0%
! GGAGTACTATTACTATCTTG+GGG + chr4_4:6770399-6770418 Msa0666650:CDS 35.0%
ATCATGCTCGTAATAAGGTT+AGG + chr4_4:6770426-6770445 Msa0666650:CDS 35.0%
TCATGCTCGTAATAAGGTTA+GGG + chr4_4:6770427-6770446 Msa0666650:CDS 35.0%
GTGTGTTGCAAGATATGAGA+AGG - chr4_4:6765111-6765130 None:intergenic 40.0%
CCTAACAACTTGCGATCTAT+TGG - chr4_4:6765184-6765203 None:intergenic 40.0%
CCAATAGATCGCAAGTTGTT+AGG + chr4_4:6765181-6765200 Msa0666650:CDS 40.0%
! GTAAACTCAACCACTGCTTT+TGG + chr4_4:6765307-6765326 Msa0666650:CDS 40.0%
GTTGACTAAACCAAAAGCAG+TGG - chr4_4:6765320-6765339 None:intergenic 40.0%
!! AAACTTGTTGGAAGAGCTCA+AGG + chr4_4:6765382-6765401 Msa0666650:CDS 40.0%
!! AACTTGTTGGAAGAGCTCAA+GGG + chr4_4:6765383-6765402 Msa0666650:CDS 40.0%
!! GGGAGTACTCTTACTATTGT+AGG + chr4_4:6765484-6765503 Msa0666650:CDS 40.0%
GTACTCTTACTATTGTAGGG+AGG + chr4_4:6765488-6765507 Msa0666650:CDS 40.0%
GAGGAATCCTGCCATTAATA+AGG + chr4_4:6765507-6765526 Msa0666650:CDS 40.0%
TCCCTAACCTTATTAATGGC+AGG - chr4_4:6765517-6765536 None:intergenic 40.0%
!!! GGACTTTTCAGATTTGCTAG+AGG + chr4_4:6765559-6765578 Msa0666650:CDS 40.0%
!! AGAATCCACTTGTGTTGGTT+TGG + chr4_4:6765727-6765746 Msa0666650:intron 40.0%
! GAATTGAATCTGAGGCTTCA+AGG - chr4_4:6765786-6765805 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr4_4:6765959-6765978 None:intergenic 40.0%
CCGGTATAATTGACCTACTT+TGG - chr4_4:6766145-6766164 None:intergenic 40.0%
GTAGGTCAATTATACCGGAA+CGG + chr4_4:6766147-6766166 Msa0666650:intron 40.0%
AATTATTCCTACCTCCGTTC+CGG - chr4_4:6766164-6766183 None:intergenic 40.0%
!!! GGTGCTTTTTTCCATATTCG+TGG + chr4_4:6766447-6766466 Msa0666650:intron 40.0%
! TTTCCATATTCGTGGCTCTA+TGG + chr4_4:6766455-6766474 Msa0666650:intron 40.0%
! TTCCATATTCGTGGCTCTAT+GGG + chr4_4:6766456-6766475 Msa0666650:intron 40.0%
!! AGGTTGGTTGAATGGGTTAT+GGG - chr4_4:6766551-6766570 None:intergenic 40.0%
!! TAGGTTGGTTGAATGGGTTA+TGG - chr4_4:6766552-6766571 None:intergenic 40.0%
!! GAAGGAATAGGTTGGTTGAA+TGG - chr4_4:6766559-6766578 None:intergenic 40.0%
CTACATAGGAAGGAATAGGT+TGG - chr4_4:6766567-6766586 None:intergenic 40.0%
CAACCTATTCCTTCCTATGT+AGG + chr4_4:6766565-6766584 Msa0666650:intron 40.0%
! GGTAGTGGCAAACATATTCA+AGG - chr4_4:6767150-6767169 None:intergenic 40.0%
! CTAGAAATCCGTTTTCTGAG+CGG + chr4_4:6767298-6767317 Msa0666650:intron 40.0%
TGAAGGCTAGGGAAATAACT+TGG + chr4_4:6767321-6767340 Msa0666650:intron 40.0%
GAGACGTGACAACAAGATTA+AGG - chr4_4:6767392-6767411 None:intergenic 40.0%
ATACTAGGGAGAAGTAGCTA+GGG - chr4_4:6767468-6767487 None:intergenic 40.0%
GATGAGTCTGTAACCATTGA+AGG - chr4_4:6767701-6767720 None:intergenic 40.0%
TAGCTAAGCCCAATATGTCT+TGG - chr4_4:6767765-6767784 None:intergenic 40.0%
GGTCATTGTTGGATCAAACT+GGG - chr4_4:6768964-6768983 None:intergenic 40.0%
AGGTCATTGTTGGATCAAAC+TGG - chr4_4:6768965-6768984 None:intergenic 40.0%
CCTTCATAGTAGGTCATTGT+TGG - chr4_4:6768975-6768994 None:intergenic 40.0%
CCAACAATGACCTACTATGA+AGG + chr4_4:6768972-6768991 Msa0666650:intron 40.0%
TTGGGAAGAGATTGGGAAAA+AGG - chr4_4:6769107-6769126 None:intergenic 40.0%
! TTGGTTCTTGGGAAGAGATT+GGG - chr4_4:6769114-6769133 None:intergenic 40.0%
! ATTGGTTCTTGGGAAGAGAT+TGG - chr4_4:6769115-6769134 None:intergenic 40.0%
! ATTTGACGAGGGGTTCTTTT+GGG - chr4_4:6769184-6769203 None:intergenic 40.0%
! TATTTGACGAGGGGTTCTTT+TGG - chr4_4:6769185-6769204 None:intergenic 40.0%
GCGCTATTCAAAACATGAAG+AGG + chr4_4:6769257-6769276 Msa0666650:intron 40.0%
GAAAAAAGGAGTGGGATGTA+GGG - chr4_4:6769825-6769844 None:intergenic 40.0%
GGGAAAAAGGAAAAAAGGAG+TGG - chr4_4:6769834-6769853 None:intergenic 40.0%
GAGAGGAAAGTGAACGAAAA+AGG - chr4_4:6769855-6769874 None:intergenic 40.0%
GTGAAGTGAAATGAAGGTGA+TGG - chr4_4:6769889-6769908 None:intergenic 40.0%
! ATAGTAAAGTAGTGGAGGAG+AGG - chr4_4:6769938-6769957 None:intergenic 40.0%
TGGAGATAGTAAAGTAGTGG+AGG - chr4_4:6769943-6769962 None:intergenic 40.0%
GAAGGAAGAAGAACAAAGTG+AGG - chr4_4:6770010-6770029 None:intergenic 40.0%
GTGTGTTACAAGAGATGAGA+AGG - chr4_4:6770028-6770047 None:intergenic 40.0%
CACACTCACTTCTTCAACAT+CGG + chr4_4:6770043-6770062 Msa0666650:intron 40.0%
CCTAACAACTTGCGATCTAT+TGG - chr4_4:6765184-6765203 None:intergenic 40.0%
CCAATAGATCGCAAGTTGTT+AGG + chr4_4:6765181-6765200 Msa0666650:CDS 40.0%
GTTGTTAGGCCTAAACAAGA+AGG + chr4_4:6770109-6770128 Msa0666650:intron 40.0%
!! AAACTTGTTGGTAGAGCTCA+AGG + chr4_4:6770296-6770315 Msa0666650:CDS 40.0%
TCTGCTTCACAGGAAGAAAT+AGG + chr4_4:6770329-6770348 Msa0666650:CDS 40.0%
GTACTATTACTATCTTGGGG+AGG + chr4_4:6770402-6770421 Msa0666650:CDS 40.0%
GAGGAATCATGCTCGTAATA+AGG + chr4_4:6770421-6770440 Msa0666650:CDS 40.0%
!!! GGACTTTTCAGATTTGCTAC+AGG + chr4_4:6770473-6770492 Msa0666650:CDS 40.0%
ATGCTCAAGCTAGTACTCAT+TGG + chr4_4:6770498-6770517 Msa0666650:CDS 40.0%
ATTGGATTGATGCCAAAGCT+GGG + chr4_4:6770516-6770535 Msa0666650:CDS 40.0%
GGAACAATTGCAACCGAAGT+TGG - chr4_4:6765274-6765293 None:intergenic 45.0%
!! ATCCACTTGTGTTGGTTTGG+TGG + chr4_4:6765730-6765749 Msa0666650:intron 45.0%
TACCACCAAACCAACACAAG+TGG - chr4_4:6765735-6765754 None:intergenic 45.0%
TCAAGGATGAGCACATTCTC+AGG - chr4_4:6765769-6765788 None:intergenic 45.0%
AATTATACCGGAACGGAGGT+AGG + chr4_4:6766154-6766173 Msa0666650:intron 45.0%
AGATACTCTCTTCAACCTCG+AGG + chr4_4:6766311-6766330 Msa0666650:intron 45.0%
!! AATTCCATTCTCTTGGTGCC+TGG - chr4_4:6766351-6766370 None:intergenic 45.0%
ACGTGATATGCGTATGTGGT+CGG - chr4_4:6766407-6766426 None:intergenic 45.0%
ACCACATACGCATATCACGT+TGG + chr4_4:6766407-6766426 Msa0666650:intron 45.0%
TTCCCATAGAGCCACGAATA+TGG - chr4_4:6766461-6766480 None:intergenic 45.0%
!! GGTTGGTTGAATGGGTTATG+GGG - chr4_4:6766550-6766569 None:intergenic 45.0%
TGGAGTTAGAGCTCTCAGAA+TGG + chr4_4:6766984-6767003 Msa0666650:intron 45.0%
CATACTAGGGAGAAGTAGCT+AGG - chr4_4:6767469-6767488 None:intergenic 45.0%
! GAGTTGGGCATATTCGAGTT+TGG - chr4_4:6768188-6768207 None:intergenic 45.0%
GGTTGAGTGTATTTGACGAG+GGG - chr4_4:6769194-6769213 None:intergenic 45.0%
GGGTTGAGTGTATTTGACGA+GGG - chr4_4:6769195-6769214 None:intergenic 45.0%
AGGGTTGAGTGTATTTGACG+AGG - chr4_4:6769196-6769215 None:intergenic 45.0%
GGAAAAAAGGAGTGGGATGT+AGG - chr4_4:6769826-6769845 None:intergenic 45.0%
GGAACAATTGCAACCGAAGT+TGG - chr4_4:6765274-6765293 None:intergenic 45.0%
CATTGGATTGATGCCAAAGC+TGG + chr4_4:6770515-6770534 Msa0666650:CDS 45.0%
TTGGATTGATGCCAAAGCTG+GGG + chr4_4:6770517-6770536 Msa0666650:CDS 45.0%
GTTAGGGAGATGCCTGTTGT+TGG + chr4_4:6765529-6765548 Msa0666650:CDS 50.0%
!! ATGCCTGTTGTTGGTGGTAG+TGG + chr4_4:6765538-6765557 Msa0666650:CDS 50.0%
AGTCCACTACCACCAACAAC+AGG - chr4_4:6765544-6765563 None:intergenic 50.0%
!! AAAAAGTACTCCCTCCGTCC+CGG + chr4_4:6765938-6765957 Msa0666650:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr4_4:6765955-6765974 None:intergenic 50.0%
GGTCAATTATACCGGAACGG+AGG + chr4_4:6766150-6766169 Msa0666650:intron 50.0%
!! GAGAGTATCTCTCAACCACG+TGG - chr4_4:6766301-6766320 None:intergenic 50.0%
CTCTTCAACCTCGAGGAACT+TGG + chr4_4:6766318-6766337 Msa0666650:intron 50.0%
AACCTCGAGGAACTTGGTTC+AGG + chr4_4:6766324-6766343 Msa0666650:intron 50.0%
GCCAACGTGATATGCGTATG+TGG - chr4_4:6766411-6766430 None:intergenic 50.0%
!! GTTGAATGGGTTATGGGGTG+TGG - chr4_4:6766545-6766564 None:intergenic 50.0%
GTTTGCCACTACCTTGTGCA+CGG + chr4_4:6767157-6767176 Msa0666650:intron 50.0%
! ATCCGTTTTCTGAGCGGTGA+AGG + chr4_4:6767304-6767323 Msa0666650:intron 50.0%
AGCCTTCACCGCTCAGAAAA+CGG - chr4_4:6767309-6767328 None:intergenic 50.0%
! TTTTCTGAGCGGTGAAGGCT+AGG + chr4_4:6767309-6767328 Msa0666650:intron 50.0%
TTTCTGAGCGGTGAAGGCTA+GGG + chr4_4:6767310-6767329 Msa0666650:intron 50.0%
!!! ACGAGGGGTTCTTTTGGGTT+GGG - chr4_4:6769179-6769198 None:intergenic 50.0%
GTTAGGGAGATGCCTGTTGT+TGG + chr4_4:6765529-6765548 Msa0666650:CDS 50.0%
!! ATGCCTGTTGTTGGTGGTAG+TGG + chr4_4:6765538-6765557 Msa0666650:CDS 50.0%
AGTCCACTACCACCAACAAC+AGG - chr4_4:6765544-6765563 None:intergenic 50.0%
AACACAAGCATCCCCAGCTT+TGG - chr4_4:6770531-6770550 None:intergenic 50.0%
AGGGAGATGCCTGTTGTTGG+TGG + chr4_4:6765532-6765551 Msa0666650:CDS 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr4_4:6765951-6765970 None:intergenic 55.0%
TCTCAACCACGTGGCATCTC+GGG - chr4_4:6766292-6766311 None:intergenic 55.0%
CTCTCAACCACGTGGCATCT+CGG - chr4_4:6766293-6766312 None:intergenic 55.0%
GTCCTGAACCAAGTTCCTCG+AGG - chr4_4:6766329-6766348 None:intergenic 55.0%
GAGGAACTTGGTTCAGGACC+AGG + chr4_4:6766330-6766349 Msa0666650:intron 55.0%
AGGACCAGGCACCAAGAGAA+TGG + chr4_4:6766344-6766363 Msa0666650:intron 55.0%
TTGGCCACGCCACAAAGACT+TGG + chr4_4:6766426-6766445 Msa0666650:intron 55.0%
AGCACCAAGTCTTTGTGGCG+TGG - chr4_4:6766433-6766452 None:intergenic 55.0%
!! GTGGCGTGGTTGTTGACTCA+TGG - chr4_4:6766526-6766545 None:intergenic 55.0%
CTGCGTGATGCGCATGATTG+AGG + chr4_4:6767123-6767142 Msa0666650:intron 55.0%
GTCTATGTGCACCGTGCACA+AGG - chr4_4:6767171-6767190 None:intergenic 55.0%
!! GACGAGGGGTTCTTTTGGGT+TGG - chr4_4:6769180-6769199 None:intergenic 55.0%
AGGAGTGGGATGTAGGGTCA+AGG - chr4_4:6769819-6769838 None:intergenic 55.0%
AGGGAGATGCCTGTTGTTGG+TGG + chr4_4:6765532-6765551 Msa0666650:CDS 55.0%
GGTCAGTTATTCCGGGACGG+AGG - chr4_4:6765952-6765971 None:intergenic 60.0%
! ATGGGTTATGGGGTGTGGCG+TGG - chr4_4:6766540-6766559 None:intergenic 60.0%
GTGCACCGTGCACAAGGTAG+TGG - chr4_4:6767165-6767184 None:intergenic 60.0%
TGGGTGTGTGCATCGCGCAT+TGG - chr4_4:6767193-6767212 None:intergenic 60.0%
CCACGTGGCATCTCGGGAGT+CGG - chr4_4:6766286-6766305 None:intergenic 65.0%
CCGACTCCCGAGATGCCACG+TGG + chr4_4:6766283-6766302 Msa0666650:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 6765091 6770580 6765091 ID=Msa0666650;Name=Msa0666650
chr4_4 mRNA 6765091 6770580 6765091 ID=Msa0666650-mRNA-1;Parent=Msa0666650;Name=Msa0666650-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|1|0|0|4|0|329
chr4_4 exon 6765091 6765328 6765091 ID=Msa0666650-mRNA-1:exon:2197;Parent=Msa0666650-mRNA-1
chr4_4 exon 6765335 6765436 6765335 ID=Msa0666650-mRNA-1:exon:2198;Parent=Msa0666650-mRNA-1
chr4_4 exon 6765473 6765651 6765473 ID=Msa0666650-mRNA-1:exon:2199;Parent=Msa0666650-mRNA-1
chr4_4 exon 6770110 6770580 6770110 ID=Msa0666650-mRNA-1:exon:2200;Parent=Msa0666650-mRNA-1
chr4_4 CDS 6765091 6765328 6765091 ID=Msa0666650-mRNA-1:cds;Parent=Msa0666650-mRNA-1
chr4_4 CDS 6765335 6765436 6765335 ID=Msa0666650-mRNA-1:cds;Parent=Msa0666650-mRNA-1
chr4_4 CDS 6765473 6765651 6765473 ID=Msa0666650-mRNA-1:cds;Parent=Msa0666650-mRNA-1
chr4_4 CDS 6770110 6770580 6770110 ID=Msa0666650-mRNA-1:cds;Parent=Msa0666650-mRNA-1
Gene Sequence

>Msa0666650

ATGACTTTGTTCTTCTTCCTTCTCATATCTTGCAACACACTCACTGCTTCAACTTCGTCAGAAAAGCAAGACACTTTCGATTTTGTTCGTCCAATAGATCGCAAGTTGTTAGGCTTAAACAAGAAAGAAAAGCTAAGTCATTTCAGATTCTATTGGCATGATATCTTGAGTGGAAAAAATCCAACTTCGGTTGCAATTGTTCCACCATCATCAAAAGTAAACTCAACCACTGCTTTTGTCAACATGATTGACAACCCTTTAACTTTAGGACCAGAACTGAGTTCTAAACTTGTTGGAAGAGCTCAAGGGTTCTATGCATCTGCTTCACAAGAAGAAATAGGAAAGTATAATGGGAGTACTCTTACTATTGTAGGGAGGAATCCTGCCATTAATAAGGTTAGGGAGATGCCTGTTGTTGGTGGTAGTGGACTTTTCAGATTTGCTAGAGGATATGCTCAAGCTAATACTCATTGGATTGATTACAAAACTGGGGATGCTTGTGTTGAGTACAATGTCCATTTGTTAGGCCTAAACAAGAAGGAAAAGCTAAGTCATTTCAAATTATATTGGCATGACATAGTTAGTGGAAAAAATCCAACTTCGGTTGCAATTGTTCCACCATCATCAAAAGTAAACTCAACCACTTTTTTTGGTTTAGTCAGCATGATTGACAACCCTTTAACTTTAGGACCCGAATTGAGTTCTAAACTTGTTGGTAGAGCTCAAGGATTTTATGCATCTGCTTCACAGGAAGAAATAGGTTTTCTTATGACAATGAATTTTGCTTTCATTGAAGGAAAGTATAATGGGAGTACTATTACTATCTTGGGGAGGAATCATGCTCGTAATAAGGTTAGGGAGATGCCTGTTGTTGGTGGTAGTGGACTTTTCAGATTTGCTACAGGATATGCTCAAGCTAGTACTCATTGGATTGATGCCAAAGCTGGGGATGCTTGTGTTGAGTACAATGTTTATGTTTTTCACTATTGA
Protein sequence

>Msa0666650

MTLFFFLLISCNTLTASTSSEKQDTFDFVRPIDRKLLGLNKKEKLSHFRFYWHDILSGKNPTSVAIVPPSSKVNSTTAFVNMIDNPLTLGPELSSKLVGRAQGFYASASQEEIGKYNGSTLTIVGRNPAINKVREMPVVGGSGLFRFARGYAQANTHWIDYKTGDACVEYNVHLLGLNKKEKLSHFKLYWHDIVSGKNPTSVAIVPPSSKVNSTTFFGLVSMIDNPLTLGPELSSKLVGRAQGFYASASQEEIGFLMTMNFAFIEGKYNGSTITILGRNHARNKVREMPVVGGSGLFRFATGYAQASTHWIDAKAGDACVEYNVYVFHY*