Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629250 | CAA65771.1 | 99.600 | 250 | 1 | 0 | 1 | 250 | 1 | 250 | 0.0 | 509 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629250 | sp|O65100|FRI3_VIGUN | 79.216 | 255 | 48 | 1 | 1 | 250 | 1 | 255 | 2.21e-140 | 397 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629250 | Q9ZP90 | 99.600 | 250 | 1 | 0 | 1 | 250 | 1 | 250 | 0.0 | 509 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0625680 | Msa0629250 | 0.801238 | 9.895578e-49 | -8.615850e-47 |
| Msa0629250 | Msa0667040 | 0.891271 | 4.625451e-74 | -8.615850e-47 |
| Msa0629250 | Msa0771720 | 0.816764 | 4.672849e-52 | -8.615850e-47 |
| Msa0385580 | Msa0629250 | 0.800344 | 1.506185e-48 | -8.615850e-47 |
| Msa0532240 | Msa0629250 | 0.900974 | 4.278809e-78 | -8.615850e-47 |
| Msa0589190 | Msa0629250 | 0.922149 | 1.430531e-88 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629250 | MtrunA17_Chr4g0005581 | 99.200 | 250 | 2 | 0 | 1 | 250 | 1 | 250 | 0.0 | 506 |
| Msa0629250 | MtrunA17_Chr7g0243241 | 76.680 | 253 | 54 | 2 | 1 | 250 | 1 | 251 | 2.16e-133 | 376 |
| Msa0629250 | MtrunA17_Chr5g0437531 | 71.889 | 217 | 60 | 1 | 35 | 250 | 28 | 244 | 2.82e-107 | 310 |
| Msa0629250 | MtrunA17_Chr5g0431291 | 70.161 | 124 | 33 | 1 | 126 | 249 | 11 | 130 | 1.08e-56 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629250 | AT5G01600.1 | 68.293 | 246 | 66 | 2 | 11 | 250 | 16 | 255 | 1.79e-116 | 333 |
| Msa0629250 | AT2G40300.1 | 70.982 | 224 | 63 | 1 | 28 | 249 | 34 | 257 | 1.56e-111 | 321 |
| Msa0629250 | AT3G56090.1 | 78.351 | 194 | 42 | 0 | 56 | 249 | 62 | 255 | 4.86e-107 | 310 |
| Msa0629250 | AT3G11050.1 | 70.673 | 208 | 61 | 0 | 43 | 250 | 43 | 250 | 7.28e-103 | 299 |
| Msa0629250 | AT3G61010.1 | 70.000 | 50 | 15 | 0 | 97 | 146 | 369 | 418 | 1.03e-15 | 76.3 |
| Msa0629250 | AT3G61010.3 | 70.000 | 50 | 15 | 0 | 97 | 146 | 369 | 418 | 1.03e-15 | 76.3 |
Find 82 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGCTCATAATGTTTCTT+TGG | 0.198410 | 4_3:+10124087 | Msa0629250:CDS |
| TGTGGATAACAGGTTCTTTA+AGG | 0.220356 | 4_3:+10124730 | Msa0629250:intron |
| GTCAAACTTTGTTAGCTTCC+TGG | 0.267071 | 4_3:+10126898 | Msa0629250:three_prime_UTR |
| AGTTATCATTGGTGTTAATT+AGG | 0.272792 | 4_3:+10126794 | Msa0629250:three_prime_UTR |
| CATGGAATTGGCTCTGTCTT+TGG | 0.276046 | 4_3:+10125578 | Msa0629250:CDS |
| TGCTTTGTTCATAAACTCTC+TGG | 0.325216 | 4_3:+10127031 | Msa0629250:three_prime_UTR |
| TTCCTGCTACCTTGCCTGTT+TGG | 0.330205 | 4_3:+10126922 | Msa0629250:three_prime_UTR |
| CAAGCTACAAACAGTTATTA+TGG | 0.335464 | 4_3:-10126683 | None:intergenic |
| AATGCACCAACGGCATTAAC+TGG | 0.362157 | 4_3:+10124013 | Msa0629250:CDS |
| GTTTGATTCAGCCATGGAAT+TGG | 0.370462 | 4_3:+10125566 | Msa0629250:intron |
| AAAGAAACATTATGAGCAAT+AGG | 0.377860 | 4_3:-10124085 | None:intergenic |
| TCCGAGGGAGGGCTCACAAT+AGG | 0.389869 | 4_3:-10125202 | None:intergenic |
| TTCTTCTTTGAATCTTCCTA+TGG | 0.409275 | 4_3:+10123946 | Msa0629250:CDS |
| AGACCCGTGAGCTTGAGTTT+TGG | 0.418442 | 4_3:+10126876 | Msa0629250:three_prime_UTR |
| CACGGGTCTAAGCATGTGTT+TGG | 0.419791 | 4_3:-10126862 | None:intergenic |
| GGAATTTGATCATGCAGAAA+AGG | 0.421929 | 4_3:+10125222 | Msa0629250:CDS |
| CCGAGGGAGGGCTCACAATA+GGG | 0.437384 | 4_3:-10125201 | None:intergenic |
| CTTAATCAATGGAGAATCAA+TGG | 0.443154 | 4_3:-10126510 | None:intergenic |
| GAAAATTGAGAAAGGATTGA+AGG | 0.451054 | 4_3:-10123817 | None:intergenic |
| TAGTTTCACTGAGGAATGTT+TGG | 0.452988 | 4_3:+10126756 | Msa0629250:three_prime_UTR |
| TTGTTATGTGGTTGTGAAGA+GGG | 0.461390 | 4_3:-10123767 | None:intergenic |
| ATTAGAGAAGAATAACGAAA+AGG | 0.462573 | 4_3:-10123848 | None:intergenic |
| TCTTTGAATCTTCCTATGGA+TGG | 0.467506 | 4_3:+10123950 | Msa0629250:CDS |
| AGGCAAGGTAGCAGGAAGCC+AGG | 0.470219 | 4_3:-10126916 | None:intergenic |
| GTCGTTGAGAAAATTGAGAA+AGG | 0.472968 | 4_3:-10123825 | None:intergenic |
| TTAGAGAAGAATAACGAAAA+GGG | 0.474992 | 4_3:-10123847 | None:intergenic |
| GTGACTCAACTGAGATTAGT+TGG | 0.480672 | 4_3:+10126344 | Msa0629250:CDS |
| TGATTTGCTTAGAATATTCG+TGG | 0.482145 | 4_3:+10125160 | Msa0629250:intron |
| TCAAATGTAACAATCCAAAC+AGG | 0.482394 | 4_3:-10126936 | None:intergenic |
| GTGAAGAGGGTGAGGGACAA+AGG | 0.485559 | 4_3:-10123754 | None:intergenic |
| AATAAATGCACAGTTATCAT+TGG | 0.486346 | 4_3:+10126783 | Msa0629250:three_prime_UTR |
| CAGAGACAACGTTGCTCTCA+AGG | 0.486549 | 4_3:+10124600 | Msa0629250:CDS |
| GTTCATAAACTCTCTGGGAT+AGG | 0.489462 | 4_3:+10127037 | Msa0629250:three_prime_UTR |
| TAAATGAAATGTATTCTCCT+AGG | 0.493512 | 4_3:+10126589 | Msa0629250:three_prime_UTR |
| ATCCAAACAGGCAAGGTAGC+AGG | 0.495607 | 4_3:-10126924 | None:intergenic |
| TTCCTATGGATGGTGATAAG+AGG | 0.508563 | 4_3:+10123960 | Msa0629250:CDS |
| TCATACATCATCTTAATCAA+TGG | 0.509628 | 4_3:-10126521 | None:intergenic |
| CCCTATTGTGAGCCCTCCCT+CGG | 0.510066 | 4_3:+10125201 | Msa0629250:CDS |
| TCGATGAAATCTGCCAATTG+AGG | 0.510833 | 4_3:-10125794 | None:intergenic |
| GCTTTGTTCATAAACTCTCT+GGG | 0.511650 | 4_3:+10127032 | Msa0629250:three_prime_UTR |
| TGGTGAAAAGATCGAAACTT+TGG | 0.511973 | 4_3:-10123885 | None:intergenic |
| GAATTTGATCATGCAGAAAA+GGG | 0.512849 | 4_3:+10125223 | Msa0629250:CDS |
| TCTTTCTTGACTTCTTCAAA+CGG | 0.514880 | 4_3:-10124049 | None:intergenic |
| TCGTAACAATGATCCTCAAT+TGG | 0.517803 | 4_3:+10125781 | Msa0629250:CDS |
| ACAATGGCGGCTTTGTTATG+TGG | 0.518206 | 4_3:-10123779 | None:intergenic |
| TCTGGGATAGGTTATGAAAA+CGG | 0.526003 | 4_3:+10127049 | Msa0629250:three_prime_UTR |
| CAACTGAGATTAGTTGGAAA+GGG | 0.526186 | 4_3:+10126350 | Msa0629250:CDS |
| ATGTGGTTGTGAAGAGGGTG+AGG | 0.530697 | 4_3:-10123762 | None:intergenic |
| GTTAGAAATGAAAATGACGT+TGG | 0.536417 | 4_3:+10126719 | Msa0629250:three_prime_UTR |
| TTTCACTGAGGAATGTTTGG+TGG | 0.544282 | 4_3:+10126759 | Msa0629250:three_prime_UTR |
| AGAATTATGTGTAGAAGACT+TGG | 0.549163 | 4_3:+10126658 | Msa0629250:three_prime_UTR |
| AGGATTGAAGGAAAGAGAGA+TGG | 0.560687 | 4_3:-10123805 | None:intergenic |
| TCAACTGAGATTAGTTGGAA+AGG | 0.563711 | 4_3:+10126349 | Msa0629250:CDS |
| TTTGAGAAATGACCCACGAT+AGG | 0.571890 | 4_3:-10123911 | None:intergenic |
| CAAAGTATGCAAACAAAGAG+TGG | 0.577867 | 4_3:-10124576 | None:intergenic |
| TGACCAAAACTCAAGCTCAC+GGG | 0.586818 | 4_3:-10126879 | None:intergenic |
| CAAAGACAGAGCCAATTCCA+TGG | 0.587636 | 4_3:-10125577 | None:intergenic |
| GAAAAGGGAGATGCATTGTA+TGG | 0.589420 | 4_3:+10125238 | Msa0629250:CDS |
| TGCTGCTGCAAATGCACCAA+CGG | 0.590613 | 4_3:+10124003 | Msa0629250:CDS |
| TTGACCAAAACTCAAGCTCA+CGG | 0.593074 | 4_3:-10126880 | None:intergenic |
| AGAGACAACGTTGCTCTCAA+GGG | 0.594095 | 4_3:+10124601 | Msa0629250:CDS |
| TTCTGCATGATCAAATTCCG+AGG | 0.595658 | 4_3:-10125218 | None:intergenic |
| TTCCTCTTATCACCATCCAT+AGG | 0.596094 | 4_3:-10123962 | None:intergenic |
| AGATTAGTTGGAAAGGGTCA+CGG | 0.615348 | 4_3:+10126356 | Msa0629250:CDS |
| GAATATTCGTGGTGGAAGAG+TGG | 0.615684 | 4_3:+10125171 | Msa0629250:intron |
| GTTCTTTAAGGAATCTAGTG+AGG | 0.615734 | 4_3:+10124742 | Msa0629250:CDS |
| CATGATCAAATTCCGAGGGA+GGG | 0.622448 | 4_3:-10125213 | None:intergenic |
| TTTGTTATGTGGTTGTGAAG+AGG | 0.627803 | 4_3:-10123768 | None:intergenic |
| ATAACACCAGTTAATGCCGT+TGG | 0.628331 | 4_3:-10124019 | None:intergenic |
| GCATGATCAAATTCCGAGGG+AGG | 0.628535 | 4_3:-10125214 | None:intergenic |
| TGTAACAATCCAAACAGGCA+AGG | 0.631341 | 4_3:-10126931 | None:intergenic |
| TCTGCATGATCAAATTCCGA+GGG | 0.640251 | 4_3:-10125217 | None:intergenic |
| AAACAAAGAGTGGTACACAT+AGG | 0.641518 | 4_3:-10124566 | None:intergenic |
| TGAGAAGCTCATGAAATACC+AGG | 0.648725 | 4_3:+10124781 | Msa0629250:CDS |
| AGAGAGATGGTTAACAATGG+CGG | 0.662971 | 4_3:-10123792 | None:intergenic |
| TTCTACGTCTAAAATTACCT+AGG | 0.671541 | 4_3:-10126606 | None:intergenic |
| AAATGACCCACGATAGGTGA+TGG | 0.680438 | 4_3:-10123905 | None:intergenic |
| GAAAGAGAGATGGTTAACAA+TGG | 0.681158 | 4_3:-10123795 | None:intergenic |
| TGATAAGAGGAAGAACGTGA+AGG | 0.682141 | 4_3:+10123973 | Msa0629250:CDS |
| TTTGCTTAGAATATTCGTGG+TGG | 0.687765 | 4_3:+10125163 | Msa0629250:intron |
| TGTGGTTGTGAAGAGGGTGA+GGG | 0.693323 | 4_3:-10123761 | None:intergenic |
| ACTACTACGTAGTTTCACTG+AGG | 0.744932 | 4_3:+10126747 | Msa0629250:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTACTTTTTGCTTTT+TGG | + | chr4_3:10124229-10124248 | Msa0629250:intron | 15.0% |
| !!! | AATTTTCAGCTATTTATTTT+AGG | + | chr4_3:10124330-10124349 | Msa0629250:intron | 15.0% |
| !!! | ATAAGTAAAATTCACTTTTT+AGG | + | chr4_3:10124432-10124451 | Msa0629250:intron | 15.0% |
| !!! | TTAACATATAATGATTTTAG+AGG | - | chr4_3:10125082-10125101 | None:intergenic | 15.0% |
| !!! | TAATGATAGTTTTAAGTATA+TGG | + | chr4_3:10125365-10125384 | Msa0629250:intron | 15.0% |
| !! | TTATGTTTCATGAATATAAT+AGG | + | chr4_3:10125751-10125770 | Msa0629250:intron | 15.0% |
| !! | ATGAAAAATAAAAACCAATT+GGG | + | chr4_3:10125943-10125962 | Msa0629250:intron | 15.0% |
| !! | TGATATAAAATATATGAATG+AGG | + | chr4_3:10126427-10126446 | Msa0629250:intron | 15.0% |
| !!! | GCTTATTTCTTAATACTATA+TGG | + | chr4_3:10124673-10124692 | Msa0629250:intron | 20.0% |
| !!! | ATTGTTAAGTAGTAACTTTT+TGG | + | chr4_3:10124890-10124909 | Msa0629250:intron | 20.0% |
| !! | TTATACTAAAGAATCATGAT+TGG | - | chr4_3:10124940-10124959 | None:intergenic | 20.0% |
| !!! | AGTATAATAGCTTGAATTTT+AGG | + | chr4_3:10124953-10124972 | Msa0629250:intron | 20.0% |
| !! | TTTATATTGTCCTCTTATTA+TGG | + | chr4_3:10125109-10125128 | Msa0629250:intron | 20.0% |
| !! | ATTACTATATCCATAATAAG+AGG | - | chr4_3:10125122-10125141 | None:intergenic | 20.0% |
| !! | TTAAATATAATCACATGTGT+CGG | + | chr4_3:10125401-10125420 | Msa0629250:intron | 20.0% |
| !! | TGATCTCAATATGTATATAT+AGG | - | chr4_3:10125710-10125729 | None:intergenic | 20.0% |
| !! | ATATACATATTGAGATCAAA+TGG | + | chr4_3:10125712-10125731 | Msa0629250:intron | 20.0% |
| !! | TATTCATGAAACATAATTCT+TGG | - | chr4_3:10125747-10125766 | None:intergenic | 20.0% |
| !! | ATGTTTAGGTATAAATATCA+TGG | - | chr4_3:10125925-10125944 | None:intergenic | 20.0% |
| !!! | GGTTTTTATTTTTCATGTTT+AGG | - | chr4_3:10125939-10125958 | None:intergenic | 20.0% |
| !! | CATGAAAAATAAAAACCAAT+TGG | + | chr4_3:10125942-10125961 | Msa0629250:intron | 20.0% |
| !! | TAAGAACAAGAAGAAAAAAT+TGG | - | chr4_3:10126274-10126293 | None:intergenic | 20.0% |
| ! | TTAGAGAAGAATAACGAAAA+GGG | - | chr4_3:10123850-10123869 | None:intergenic | 25.0% |
| ! | ATTAGAGAAGAATAACGAAA+AGG | - | chr4_3:10123851-10123870 | None:intergenic | 25.0% |
| !! | TTTTCGTTATTCTTCTCTAA+TGG | + | chr4_3:10123850-10123869 | Msa0629250:exon | 25.0% |
| ! | AAGATTCAAAGAAGAAAAAG+TGG | - | chr4_3:10123942-10123961 | None:intergenic | 25.0% |
| ! | AAAGAAACATTATGAGCAAT+AGG | - | chr4_3:10124088-10124107 | None:intergenic | 25.0% |
| ! | TATTGCTCATAATGTTTCTT+TGG | + | chr4_3:10124087-10124106 | Msa0629250:CDS | 25.0% |
| !!! | TAGATCTATTTTTTCTCCTT+AGG | + | chr4_3:10124274-10124293 | Msa0629250:intron | 25.0% |
| ! | AGTAACAACCTATGATAATA+GGG | - | chr4_3:10124356-10124375 | None:intergenic | 25.0% |
| !! | ATAATAGCTTGAATTTTAGG+AGG | + | chr4_3:10124956-10124975 | Msa0629250:intron | 25.0% |
| ! | TTATCTTGATGTTATTGTTG+TGG | + | chr4_3:10124995-10125014 | Msa0629250:intron | 25.0% |
| ! | AATATGATAGATCAAAACAG+AGG | - | chr4_3:10125300-10125319 | None:intergenic | 25.0% |
| !!! | CTTTTTTATTTCCCTTCTTT+TGG | + | chr4_3:10125544-10125563 | Msa0629250:intron | 25.0% |
| ! | TGTTTCATGAATATAATAGG+TGG | + | chr4_3:10125754-10125773 | Msa0629250:intron | 25.0% |
| !!! | CTTTTTTATGACTGTCATTA+AGG | + | chr4_3:10125993-10126012 | Msa0629250:intron | 25.0% |
| !!! | TAAGGTTTTTGAAATCTCTA+TGG | + | chr4_3:10126011-10126030 | Msa0629250:intron | 25.0% |
| ! | TAATCTGAAAACATCTTCAA+TGG | - | chr4_3:10126150-10126169 | None:intergenic | 25.0% |
| ! | TATTACCAAAGTAATGTAAG+TGG | - | chr4_3:10126396-10126415 | None:intergenic | 25.0% |
| ! | TCATACATCATCTTAATCAA+TGG | - | chr4_3:10126524-10126543 | None:intergenic | 25.0% |
| ! | TAAATGAAATGTATTCTCCT+AGG | + | chr4_3:10126589-10126608 | Msa0629250:three_prime_UTR | 25.0% |
| ! | AATAAATGCACAGTTATCAT+TGG | + | chr4_3:10126783-10126802 | Msa0629250:three_prime_UTR | 25.0% |
| !!! | AGTTATCATTGGTGTTAATT+AGG | + | chr4_3:10126794-10126813 | Msa0629250:three_prime_UTR | 25.0% |
| GAAAATTGAGAAAGGATTGA+AGG | - | chr4_3:10123820-10123839 | None:intergenic | 30.0% | |
| TTCTTCTTTGAATCTTCCTA+TGG | + | chr4_3:10123946-10123965 | Msa0629250:CDS | 30.0% | |
| TCTTTCTTGACTTCTTCAAA+CGG | - | chr4_3:10124052-10124071 | None:intergenic | 30.0% | |
| ! | ATTTTAGGCCCTATTATCAT+AGG | + | chr4_3:10124345-10124364 | Msa0629250:intron | 30.0% |
| GAGTAACAACCTATGATAAT+AGG | - | chr4_3:10124357-10124376 | None:intergenic | 30.0% | |
| ATAATGATGTAAATGCAGTG+TGG | + | chr4_3:10124531-10124550 | Msa0629250:intron | 30.0% | |
| TACAAGCTGAATCTTATAGA+GGG | - | chr4_3:10124653-10124672 | None:intergenic | 30.0% | |
| ! | ACTTTGTGAATTTTTGTGTG+TGG | + | chr4_3:10124712-10124731 | Msa0629250:intron | 30.0% |
| ! | AATTTTTGTGTGTGGATAAC+AGG | + | chr4_3:10124720-10124739 | Msa0629250:intron | 30.0% |
| !! | GTAGTAACTTTTTGGTATAG+TGG | + | chr4_3:10124898-10124917 | Msa0629250:intron | 30.0% |
| TGGTATAGTGGTAAATAACA+TGG | + | chr4_3:10124910-10124929 | Msa0629250:intron | 30.0% | |
| !! | GATTTTAGAGGTCTTTGTAA+CGG | - | chr4_3:10125070-10125089 | None:intergenic | 30.0% |
| CGAATATTCTAAGCAAATCA+AGG | - | chr4_3:10125160-10125179 | None:intergenic | 30.0% | |
| !! | TGATTTGCTTAGAATATTCG+TGG | + | chr4_3:10125160-10125179 | Msa0629250:intron | 30.0% |
| GAATTTGATCATGCAGAAAA+GGG | + | chr4_3:10125223-10125242 | Msa0629250:CDS | 30.0% | |
| TATTGCATGAAACATAGACA+CGG | + | chr4_3:10125321-10125340 | Msa0629250:intron | 30.0% | |
| GAGTCAGCATAAATAGTTAA+AGG | - | chr4_3:10125521-10125540 | None:intergenic | 30.0% | |
| ATTCAAAAACAGAGAGAAAG+AGG | - | chr4_3:10125648-10125667 | None:intergenic | 30.0% | |
| ! | GGAATCAAGATTTTAAACAG+TGG | - | chr4_3:10126129-10126148 | None:intergenic | 30.0% |
| ! | TATATGTATTTTCCTTGCAC+AGG | + | chr4_3:10126292-10126311 | Msa0629250:intron | 30.0% |
| !!! | CATTTGTTTTTGTTGCTTGT+AGG | + | chr4_3:10126460-10126479 | Msa0629250:intron | 30.0% |
| CTTAATCAATGGAGAATCAA+TGG | - | chr4_3:10126513-10126532 | None:intergenic | 30.0% | |
| !!! | ACGTGTTGTTTTTACATTAC+TGG | + | chr4_3:10126557-10126576 | Msa0629250:three_prime_UTR | 30.0% |
| ! | TTCTACGTCTAAAATTACCT+AGG | - | chr4_3:10126609-10126628 | None:intergenic | 30.0% |
| AGAATTATGTGTAGAAGACT+TGG | + | chr4_3:10126658-10126677 | Msa0629250:three_prime_UTR | 30.0% | |
| CAAGCTACAAACAGTTATTA+TGG | - | chr4_3:10126686-10126705 | None:intergenic | 30.0% | |
| GTTAGAAATGAAAATGACGT+TGG | + | chr4_3:10126719-10126738 | Msa0629250:three_prime_UTR | 30.0% | |
| TCAAATGTAACAATCCAAAC+AGG | - | chr4_3:10126939-10126958 | None:intergenic | 30.0% | |
| !!! | GAGCACTTTTGAAATTGTTT+TGG | + | chr4_3:10126975-10126994 | Msa0629250:three_prime_UTR | 30.0% |
| TTGTTATGTGGTTGTGAAGA+GGG | - | chr4_3:10123770-10123789 | None:intergenic | 35.0% | |
| ! | TTTGTTATGTGGTTGTGAAG+AGG | - | chr4_3:10123771-10123790 | None:intergenic | 35.0% |
| GAAAGAGAGATGGTTAACAA+TGG | - | chr4_3:10123798-10123817 | None:intergenic | 35.0% | |
| GTCGTTGAGAAAATTGAGAA+AGG | - | chr4_3:10123828-10123847 | None:intergenic | 35.0% | |
| TGGTGAAAAGATCGAAACTT+TGG | - | chr4_3:10123888-10123907 | None:intergenic | 35.0% | |
| TCTTTGAATCTTCCTATGGA+TGG | + | chr4_3:10123950-10123969 | Msa0629250:CDS | 35.0% | |
| CTATATTACTGTGCTTCCTA+AGG | - | chr4_3:10124293-10124312 | None:intergenic | 35.0% | |
| AAACAAAGAGTGGTACACAT+AGG | - | chr4_3:10124569-10124588 | None:intergenic | 35.0% | |
| CAAAGTATGCAAACAAAGAG+TGG | - | chr4_3:10124579-10124598 | None:intergenic | 35.0% | |
| !! | GGTTTTGTATCATCCTTACT+TGG | - | chr4_3:10124632-10124651 | None:intergenic | 35.0% |
| CTACAAGCTGAATCTTATAG+AGG | - | chr4_3:10124654-10124673 | None:intergenic | 35.0% | |
| TGTGGATAACAGGTTCTTTA+AGG | + | chr4_3:10124730-10124749 | Msa0629250:intron | 35.0% | |
| ! | GTTCTTTAAGGAATCTAGTG+AGG | + | chr4_3:10124742-10124761 | Msa0629250:CDS | 35.0% |
| ACTCAGGAAGTAAATCATGT+TGG | + | chr4_3:10124814-10124833 | Msa0629250:intron | 35.0% | |
| TTTGCTTAGAATATTCGTGG+TGG | + | chr4_3:10125163-10125182 | Msa0629250:intron | 35.0% | |
| GGAATTTGATCATGCAGAAA+AGG | + | chr4_3:10125222-10125241 | Msa0629250:CDS | 35.0% | |
| GCTGAATCAAACCAAAAGAA+GGG | - | chr4_3:10125558-10125577 | None:intergenic | 35.0% | |
| TCGTAACAATGATCCTCAAT+TGG | + | chr4_3:10125781-10125800 | Msa0629250:CDS | 35.0% | |
| ! | GCAATTCTAAGCTTGGTAAT+TGG | - | chr4_3:10126099-10126118 | None:intergenic | 35.0% |
| TCTCATTGCAATTCTAAGCT+TGG | - | chr4_3:10126106-10126125 | None:intergenic | 35.0% | |
| AGAAAACACCAAGTTACTCT+TGG | - | chr4_3:10126208-10126227 | None:intergenic | 35.0% | |
| ! | TAATTGATTCAACCTGTGCA+AGG | - | chr4_3:10126307-10126326 | None:intergenic | 35.0% |
| ! | TCAACTGAGATTAGTTGGAA+AGG | + | chr4_3:10126349-10126368 | Msa0629250:CDS | 35.0% |
| ! | CAACTGAGATTAGTTGGAAA+GGG | + | chr4_3:10126350-10126369 | Msa0629250:CDS | 35.0% |
| TTCCTCCACTTACATTACTT+TGG | + | chr4_3:10126388-10126407 | Msa0629250:intron | 35.0% | |
| TACCAAAGTAATGTAAGTGG+AGG | - | chr4_3:10126393-10126412 | None:intergenic | 35.0% | |
| TAGTTTCACTGAGGAATGTT+TGG | + | chr4_3:10126756-10126775 | Msa0629250:three_prime_UTR | 35.0% | |
| ! | TGCTTTGTTCATAAACTCTC+TGG | + | chr4_3:10127031-10127050 | Msa0629250:three_prime_UTR | 35.0% |
| ! | GCTTTGTTCATAAACTCTCT+GGG | + | chr4_3:10127032-10127051 | Msa0629250:three_prime_UTR | 35.0% |
| AGAGAGATGGTTAACAATGG+CGG | - | chr4_3:10123795-10123814 | None:intergenic | 40.0% | |
| AGGATTGAAGGAAAGAGAGA+TGG | - | chr4_3:10123808-10123827 | None:intergenic | 40.0% | |
| ! | TTTTCACCATCACCTATCGT+GGG | + | chr4_3:10123899-10123918 | Msa0629250:CDS | 40.0% |
| TTTGAGAAATGACCCACGAT+AGG | - | chr4_3:10123914-10123933 | None:intergenic | 40.0% | |
| TTCCTATGGATGGTGATAAG+AGG | + | chr4_3:10123960-10123979 | Msa0629250:CDS | 40.0% | |
| TTCCTCTTATCACCATCCAT+AGG | - | chr4_3:10123965-10123984 | None:intergenic | 40.0% | |
| TGATAAGAGGAAGAACGTGA+AGG | + | chr4_3:10123973-10123992 | Msa0629250:CDS | 40.0% | |
| ATAACACCAGTTAATGCCGT+TGG | - | chr4_3:10124022-10124041 | None:intergenic | 40.0% | |
| TGAGAAGCTCATGAAATACC+AGG | + | chr4_3:10124781-10124800 | Msa0629250:CDS | 40.0% | |
| AAGCTCATGAAATACCAGGT+TGG | + | chr4_3:10124785-10124804 | Msa0629250:intron | 40.0% | |
| !! | ACCAGGTTGGTATTTAACTC+AGG | + | chr4_3:10124798-10124817 | Msa0629250:intron | 40.0% |
| TCCTGAGTTAAATACCAACC+TGG | - | chr4_3:10124802-10124821 | None:intergenic | 40.0% | |
| TCTGCATGATCAAATTCCGA+GGG | - | chr4_3:10125220-10125239 | None:intergenic | 40.0% | |
| TTCTGCATGATCAAATTCCG+AGG | - | chr4_3:10125221-10125240 | None:intergenic | 40.0% | |
| GAAAAGGGAGATGCATTGTA+TGG | + | chr4_3:10125238-10125257 | Msa0629250:CDS | 40.0% | |
| CTGCAGATCGAAAACATGTT+TGG | - | chr4_3:10125452-10125471 | None:intergenic | 40.0% | |
| GGCTGAATCAAACCAAAAGA+AGG | - | chr4_3:10125559-10125578 | None:intergenic | 40.0% | |
| !!! | CTTTTGGTTTGATTCAGCCA+TGG | + | chr4_3:10125560-10125579 | Msa0629250:intron | 40.0% |
| GTTTGATTCAGCCATGGAAT+TGG | + | chr4_3:10125566-10125585 | Msa0629250:intron | 40.0% | |
| TCGATGAAATCTGCCAATTG+AGG | - | chr4_3:10125797-10125816 | None:intergenic | 40.0% | |
| ! | TTTCATCGAGAGCGAGTTTT+TGG | + | chr4_3:10125808-10125827 | Msa0629250:CDS | 40.0% |
| CAAAAATTGCAGTGCCCAAT+TGG | - | chr4_3:10125960-10125979 | None:intergenic | 40.0% | |
| ! | CTTTAGCTCCAAGAGTAACT+TGG | + | chr4_3:10126197-10126216 | Msa0629250:intron | 40.0% |
| GTGACTCAACTGAGATTAGT+TGG | + | chr4_3:10126344-10126363 | Msa0629250:CDS | 40.0% | |
| ! | AGATTAGTTGGAAAGGGTCA+CGG | + | chr4_3:10126356-10126375 | Msa0629250:CDS | 40.0% |
| !! | TTTTGTTGCTTGTAGGTGTG+TGG | + | chr4_3:10126467-10126486 | Msa0629250:intron | 40.0% |
| ACTACTACGTAGTTTCACTG+AGG | + | chr4_3:10126747-10126766 | Msa0629250:three_prime_UTR | 40.0% | |
| TTTCACTGAGGAATGTTTGG+TGG | + | chr4_3:10126759-10126778 | Msa0629250:three_prime_UTR | 40.0% | |
| TTGACCAAAACTCAAGCTCA+CGG | - | chr4_3:10126883-10126902 | None:intergenic | 40.0% | |
| ! | GTCAAACTTTGTTAGCTTCC+TGG | + | chr4_3:10126898-10126917 | Msa0629250:three_prime_UTR | 40.0% |
| TGTAACAATCCAAACAGGCA+AGG | - | chr4_3:10126934-10126953 | None:intergenic | 40.0% | |
| !! | GTTCATAAACTCTCTGGGAT+AGG | + | chr4_3:10127037-10127056 | Msa0629250:three_prime_UTR | 40.0% |
| !! | ACAATGGCGGCTTTGTTATG+TGG | - | chr4_3:10123782-10123801 | None:intergenic | 45.0% |
| ! | CTTTTCACCATCACCTATCG+TGG | + | chr4_3:10123898-10123917 | Msa0629250:CDS | 45.0% |
| AAATGACCCACGATAGGTGA+TGG | - | chr4_3:10123908-10123927 | None:intergenic | 45.0% | |
| AATGCACCAACGGCATTAAC+TGG | + | chr4_3:10124013-10124032 | Msa0629250:CDS | 45.0% | |
| AGAGACAACGTTGCTCTCAA+GGG | + | chr4_3:10124601-10124620 | Msa0629250:CDS | 45.0% | |
| ! | GAATATTCGTGGTGGAAGAG+TGG | + | chr4_3:10125171-10125190 | Msa0629250:intron | 45.0% |
| CATGATCAAATTCCGAGGGA+GGG | - | chr4_3:10125216-10125235 | None:intergenic | 45.0% | |
| CAAAGACAGAGCCAATTCCA+TGG | - | chr4_3:10125580-10125599 | None:intergenic | 45.0% | |
| !! | CATGGAATTGGCTCTGTCTT+TGG | + | chr4_3:10125578-10125597 | Msa0629250:CDS | 45.0% |
| TGACCAAAACTCAAGCTCAC+GGG | - | chr4_3:10126882-10126901 | None:intergenic | 45.0% | |
| TGTGGTTGTGAAGAGGGTGA+GGG | - | chr4_3:10123764-10123783 | None:intergenic | 50.0% | |
| ATGTGGTTGTGAAGAGGGTG+AGG | - | chr4_3:10123765-10123784 | None:intergenic | 50.0% | |
| TGCTGCTGCAAATGCACCAA+CGG | + | chr4_3:10124003-10124022 | Msa0629250:CDS | 50.0% | |
| CAGAGACAACGTTGCTCTCA+AGG | + | chr4_3:10124600-10124619 | Msa0629250:CDS | 50.0% | |
| CTCAAGGGACTTGCCAAGTA+AGG | + | chr4_3:10124616-10124635 | Msa0629250:intron | 50.0% | |
| GCATGATCAAATTCCGAGGG+AGG | - | chr4_3:10125217-10125236 | None:intergenic | 50.0% | |
| !!! | GAGCGAGTTTTTGGTAGAGC+AGG | + | chr4_3:10125817-10125836 | Msa0629250:CDS | 50.0% |
| CACGGGTCTAAGCATGTGTT+TGG | - | chr4_3:10126865-10126884 | None:intergenic | 50.0% | |
| ! | AGACCCGTGAGCTTGAGTTT+TGG | + | chr4_3:10126876-10126895 | Msa0629250:three_prime_UTR | 50.0% |
| TTCCTGCTACCTTGCCTGTT+TGG | + | chr4_3:10126922-10126941 | Msa0629250:three_prime_UTR | 50.0% | |
| ATCCAAACAGGCAAGGTAGC+AGG | - | chr4_3:10126927-10126946 | None:intergenic | 50.0% | |
| GTGAAGAGGGTGAGGGACAA+AGG | - | chr4_3:10123757-10123776 | None:intergenic | 55.0% | |
| CCGAGGGAGGGCTCACAATA+GGG | - | chr4_3:10125204-10125223 | None:intergenic | 60.0% | |
| CCCTATTGTGAGCCCTCCCT+CGG | + | chr4_3:10125201-10125220 | Msa0629250:CDS | 60.0% | |
| TCCGAGGGAGGGCTCACAAT+AGG | - | chr4_3:10125205-10125224 | None:intergenic | 60.0% | |
| AGGCAAGGTAGCAGGAAGCC+AGG | - | chr4_3:10126919-10126938 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 10123745 | 10127069 | 10123745 | ID=Msa0629250;Name=Msa0629250 |
| chr4_3 | mRNA | 10123745 | 10127069 | 10123745 | ID=Msa0629250-mRNA-1;Parent=Msa0629250;Name=Msa0629250-mRNA-1;_AED=0.05;_eAED=0.05;_QI=124|1|1|1|1|1|8|553|250 |
| chr4_3 | exon | 10123745 | 10124161 | 10123745 | ID=Msa0629250-mRNA-1:exon:3046;Parent=Msa0629250-mRNA-1 |
| chr4_3 | exon | 10124549 | 10124632 | 10124549 | ID=Msa0629250-mRNA-1:exon:3047;Parent=Msa0629250-mRNA-1 |
| chr4_3 | exon | 10124742 | 10124802 | 10124742 | ID=Msa0629250-mRNA-1:exon:3048;Parent=Msa0629250-mRNA-1 |
| chr4_3 | exon | 10125172 | 10125259 | 10125172 | ID=Msa0629250-mRNA-1:exon:3049;Parent=Msa0629250-mRNA-1 |
| chr4_3 | exon | 10125577 | 10125638 | 10125577 | ID=Msa0629250-mRNA-1:exon:3050;Parent=Msa0629250-mRNA-1 |
| chr4_3 | exon | 10125773 | 10125838 | 10125773 | ID=Msa0629250-mRNA-1:exon:3051;Parent=Msa0629250-mRNA-1 |
| chr4_3 | exon | 10126314 | 10126377 | 10126314 | ID=Msa0629250-mRNA-1:exon:3052;Parent=Msa0629250-mRNA-1 |
| chr4_3 | exon | 10126482 | 10127069 | 10126482 | ID=Msa0629250-mRNA-1:exon:3053;Parent=Msa0629250-mRNA-1 |
| chr4_3 | five_prime_UTR | 10123745 | 10123868 | 10123745 | ID=Msa0629250-mRNA-1:five_prime_utr;Parent=Msa0629250-mRNA-1 |
| chr4_3 | CDS | 10123869 | 10124161 | 10123869 | ID=Msa0629250-mRNA-1:cds;Parent=Msa0629250-mRNA-1 |
| chr4_3 | CDS | 10124549 | 10124632 | 10124549 | ID=Msa0629250-mRNA-1:cds;Parent=Msa0629250-mRNA-1 |
| chr4_3 | CDS | 10124742 | 10124802 | 10124742 | ID=Msa0629250-mRNA-1:cds;Parent=Msa0629250-mRNA-1 |
| chr4_3 | CDS | 10125172 | 10125259 | 10125172 | ID=Msa0629250-mRNA-1:cds;Parent=Msa0629250-mRNA-1 |
| chr4_3 | CDS | 10125577 | 10125638 | 10125577 | ID=Msa0629250-mRNA-1:cds;Parent=Msa0629250-mRNA-1 |
| chr4_3 | CDS | 10125773 | 10125838 | 10125773 | ID=Msa0629250-mRNA-1:cds;Parent=Msa0629250-mRNA-1 |
| chr4_3 | CDS | 10126314 | 10126377 | 10126314 | ID=Msa0629250-mRNA-1:cds;Parent=Msa0629250-mRNA-1 |
| chr4_3 | CDS | 10126482 | 10126516 | 10126482 | ID=Msa0629250-mRNA-1:cds;Parent=Msa0629250-mRNA-1 |
| chr4_3 | three_prime_UTR | 10126517 | 10127069 | 10126517 | ID=Msa0629250-mRNA-1:three_prime_utr;Parent=Msa0629250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
