Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625680 | XP_003604201.1 | 89.496 | 238 | 20 | 2 | 1 | 234 | 1 | 237 | 8.79e-145 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625680 | sp|Q8W487|YB95_ARATH | 29.289 | 239 | 162 | 4 | 2 | 233 | 12 | 250 | 9.59e-26 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625680 | G7JD84 | 89.496 | 238 | 20 | 2 | 1 | 234 | 1 | 237 | 4.20e-145 | 414 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011960 | Msa0625680 | 0.846428 | 2.185926e-59 | -8.615850e-47 |
| Msa0023000 | Msa0625680 | 0.816601 | 5.083602e-52 | -8.615850e-47 |
| Msa0025730 | Msa0625680 | 0.813249 | 2.816463e-51 | -8.615850e-47 |
| Msa0027260 | Msa0625680 | 0.846815 | 1.713881e-59 | -8.615850e-47 |
| Msa0027770 | Msa0625680 | 0.816658 | 4.938070e-52 | -8.615850e-47 |
| Msa0032580 | Msa0625680 | 0.829234 | 5.770182e-55 | -8.615850e-47 |
| Msa0040690 | Msa0625680 | 0.816411 | 5.607248e-52 | -8.615850e-47 |
| Msa0043660 | Msa0625680 | 0.816707 | 4.813825e-52 | -8.615850e-47 |
| Msa0047160 | Msa0625680 | 0.808591 | 2.872846e-50 | -8.615850e-47 |
| Msa0054480 | Msa0625680 | 0.801065 | 1.073604e-48 | -8.615850e-47 |
| Msa0055180 | Msa0625680 | 0.846220 | 2.491054e-59 | -8.615850e-47 |
| Msa0059040 | Msa0625680 | 0.810847 | 9.403018e-51 | -8.615850e-47 |
| Msa0059110 | Msa0625680 | 0.826806 | 2.215918e-54 | -8.615850e-47 |
| Msa0061080 | Msa0625680 | 0.826575 | 2.515932e-54 | -8.615850e-47 |
| Msa0063530 | Msa0625680 | 0.810771 | 9.764936e-51 | -8.615850e-47 |
| Msa0067630 | Msa0625680 | 0.862885 | 3.689729e-64 | -8.615850e-47 |
| Msa0070700 | Msa0625680 | 0.801277 | 9.715915e-49 | -8.615850e-47 |
| Msa0073480 | Msa0625680 | 0.803657 | 3.140056e-49 | -8.615850e-47 |
| Msa0075500 | Msa0625680 | 0.827997 | 1.148397e-54 | -8.615850e-47 |
| Msa0086750 | Msa0625680 | 0.802603 | 5.186348e-49 | -8.615850e-47 |
| Msa0090520 | Msa0625680 | 0.802095 | 6.599504e-49 | -8.615850e-47 |
| Msa0094470 | Msa0625680 | 0.829287 | 5.602254e-55 | -8.615850e-47 |
| Msa0100740 | Msa0625680 | 0.855402 | 6.463231e-62 | -8.615850e-47 |
| Msa0105620 | Msa0625680 | 0.845540 | 3.809941e-59 | -8.615850e-47 |
| Msa0610430 | Msa0625680 | 0.817885 | 2.613816e-52 | -8.615850e-47 |
| Msa0620890 | Msa0625680 | 0.818335 | 2.068084e-52 | -8.615850e-47 |
| Msa0625680 | Msa0625720 | 0.806830 | 6.800280e-50 | -8.615850e-47 |
| Msa0625680 | Msa0629250 | 0.801238 | 9.895578e-49 | -8.615850e-47 |
| Msa0625680 | Msa0647500 | 0.804665 | 1.936936e-49 | -8.615850e-47 |
| Msa0625680 | Msa0660490 | 0.813561 | 2.405113e-51 | -8.615850e-47 |
| Msa0625680 | Msa0661300 | 0.802899 | 4.505924e-49 | -8.615850e-47 |
| Msa0625680 | Msa0685140 | 0.806727 | 7.148738e-50 | -8.615850e-47 |
| Msa0625680 | Msa0689260 | 0.857661 | 1.401976e-62 | -8.615850e-47 |
| Msa0625680 | Msa0690150 | 0.806120 | 9.599131e-50 | -8.615850e-47 |
| Msa0625680 | Msa0691290 | 0.800458 | 1.427930e-48 | -8.615850e-47 |
| Msa0625680 | Msa0692830 | 0.821196 | 4.591466e-53 | -8.615850e-47 |
| Msa0625680 | Msa0692950 | 0.806735 | 7.120833e-50 | -8.615850e-47 |
| Msa0625680 | Msa0698540 | 0.804722 | 1.884546e-49 | -8.615850e-47 |
| Msa0625680 | Msa0709500 | 0.821918 | 3.126605e-53 | -8.615850e-47 |
| Msa0625680 | Msa0711780 | 0.839972 | 1.150606e-57 | -8.615850e-47 |
| Msa0625680 | Msa0715650 | 0.820297 | 7.390433e-53 | -8.615850e-47 |
| Msa0625680 | Msa0715700 | 0.839525 | 1.504199e-57 | -8.615850e-47 |
| Msa0625680 | Msa0719420 | 0.819629 | 1.050450e-52 | -8.615850e-47 |
| Msa0625680 | Msa0750880 | 0.802428 | 5.637194e-49 | -8.615850e-47 |
| Msa0625680 | Msa0763330 | 0.808715 | 2.703354e-50 | -8.615850e-47 |
| Msa0625680 | Msa0772480 | 0.841826 | 3.755532e-58 | -8.615850e-47 |
| Msa0625680 | Msa0789680 | 0.823085 | 1.675017e-53 | -8.615850e-47 |
| Msa0625680 | Msa0790850 | 0.819757 | 9.823479e-53 | -8.615850e-47 |
| Msa0625680 | Msa0793800 | 0.828691 | 7.809033e-55 | -8.615850e-47 |
| Msa0625680 | Msa0794670 | 0.861509 | 9.756943e-64 | -8.615850e-47 |
| Msa0625680 | Msa0798440 | 0.847766 | 9.392459e-60 | -8.615850e-47 |
| Msa0625680 | Msa0802410 | 0.830477 | 2.872142e-55 | -8.615850e-47 |
| Msa0625680 | Msa0830540 | 0.835098 | 2.044814e-56 | -8.615850e-47 |
| Msa0625680 | Msa0831530 | 0.820724 | 5.897677e-53 | -8.615850e-47 |
| Msa0625680 | Msa0902760 | 0.841145 | 5.673589e-58 | -8.615850e-47 |
| Msa0625680 | Msa0945440 | 0.812151 | 4.897644e-51 | -8.615850e-47 |
| Msa0625680 | Msa0968590 | 0.810063 | 1.388905e-50 | -8.615850e-47 |
| Msa0625680 | Msa0970030 | 0.811130 | 8.165950e-51 | -8.615850e-47 |
| Msa0625680 | Msa0989540 | 0.838212 | 3.287673e-57 | -8.615850e-47 |
| Msa0625680 | Msa0999970 | 0.804775 | 1.837417e-49 | -8.615850e-47 |
| Msa0625680 | Msa1006840 | 0.834403 | 3.058371e-56 | -8.615850e-47 |
| Msa0625680 | Msa1009820 | 0.841707 | 4.036018e-58 | -8.615850e-47 |
| Msa0625680 | Msa1013400 | 0.839241 | 1.782153e-57 | -8.615850e-47 |
| Msa0625680 | Msa1019240 | 0.801446 | 8.969249e-49 | -8.615850e-47 |
| Msa0625680 | Msa1019260 | 0.814445 | 1.534951e-51 | -8.615850e-47 |
| Msa0625680 | Msa1046020 | 0.800303 | 1.535517e-48 | -8.615850e-47 |
| Msa0625680 | Msa1051200 | 0.869319 | 3.385020e-66 | -8.615850e-47 |
| Msa0625680 | Msa1077030 | 0.800813 | 1.208246e-48 | -8.615850e-47 |
| Msa0625680 | Msa1081150 | 0.809282 | 2.044236e-50 | -8.615850e-47 |
| Msa0625680 | Msa1081930 | 0.833116 | 6.416246e-56 | -8.615850e-47 |
| Msa0625680 | Msa1084470 | 0.833146 | 6.307041e-56 | -8.615850e-47 |
| Msa0625680 | Msa1091940 | 0.807055 | 6.092757e-50 | -8.615850e-47 |
| Msa0625680 | Msa1093530 | 0.839739 | 1.323158e-57 | -8.615850e-47 |
| Msa0625680 | Msa1097920 | 0.816639 | 4.986449e-52 | -8.615850e-47 |
| Msa0625680 | Msa1104140 | 0.842221 | 2.951990e-58 | -8.615850e-47 |
| Msa0625680 | Msa1104210 | 0.810861 | 9.338119e-51 | -8.615850e-47 |
| Msa0625680 | Msa1126510 | 0.807812 | 4.208974e-50 | -8.615850e-47 |
| Msa0625680 | Msa1126830 | 0.802507 | 5.428248e-49 | -8.615850e-47 |
| Msa0625680 | Msa1137700 | 0.864480 | 1.179666e-64 | -8.615850e-47 |
| Msa0625680 | Msa1160590 | 0.855303 | 6.905546e-62 | -8.615850e-47 |
| Msa0625680 | Msa1165940 | 0.825184 | 5.382832e-54 | -8.615850e-47 |
| Msa0625680 | Msa1166860 | 0.804135 | 2.498345e-49 | -8.615850e-47 |
| Msa0625680 | Msa1171360 | 0.820868 | 5.462440e-53 | -8.615850e-47 |
| Msa0625680 | Msa1181250 | 0.818316 | 2.088440e-52 | -8.615850e-47 |
| Msa0625680 | Msa1181330 | 0.810302 | 1.233428e-50 | -8.615850e-47 |
| Msa0625680 | Msa1207270 | 0.848964 | 4.381496e-60 | -8.615850e-47 |
| Msa0625680 | Msa1208880 | 0.817724 | 2.842052e-52 | -8.615850e-47 |
| Msa0625680 | Msa1209200 | 0.804017 | 2.643068e-49 | -8.615850e-47 |
| Msa0625680 | Msa1209760 | 0.811833 | 5.745994e-51 | -8.615850e-47 |
| Msa0625680 | Msa1213480 | 0.815878 | 7.375124e-52 | -8.615850e-47 |
| Msa0625680 | Msa1218600 | 0.815767 | 7.810370e-52 | -8.615850e-47 |
| Msa0625680 | Msa1224810 | 0.830864 | 2.309250e-55 | -8.615850e-47 |
| Msa0625680 | Msa1245930 | 0.821073 | 4.901023e-53 | -8.615850e-47 |
| Msa0625680 | Msa1254730 | 0.802271 | 6.073023e-49 | -8.615850e-47 |
| Msa0625680 | Msa1259060 | 0.814852 | 1.247434e-51 | -8.615850e-47 |
| Msa0625680 | Msa1265630 | 0.808680 | 2.749284e-50 | -8.615850e-47 |
| Msa0625680 | Msa1283200 | 0.803477 | 3.421655e-49 | -8.615850e-47 |
| Msa0625680 | Msa1294820 | 0.800568 | 1.356001e-48 | -8.615850e-47 |
| Msa0625680 | Msa1300380 | 0.810595 | 1.066171e-50 | -8.615850e-47 |
| Msa0625680 | Msa1332590 | 0.825317 | 5.007322e-54 | -8.615850e-47 |
| Msa0625680 | Msa1356440 | 0.812138 | 4.929164e-51 | -8.615850e-47 |
| Msa0625680 | Msa1358250 | 0.857105 | 2.046987e-62 | -8.615850e-47 |
| Msa0625680 | Msa1379760 | 0.812640 | 3.829893e-51 | -8.615850e-47 |
| Msa0625680 | Msa1382560 | 0.805787 | 1.127739e-49 | -8.615850e-47 |
| Msa0625680 | Msa1384880 | 0.801929 | 7.140661e-49 | -8.615850e-47 |
| Msa0625680 | Msa1386780 | 0.826315 | 2.902379e-54 | -8.615850e-47 |
| Msa0625680 | Msa1392780 | 0.837564 | 4.824954e-57 | -8.615850e-47 |
| Msa0625680 | Msa1394290 | 0.844926 | 5.584961e-59 | -8.615850e-47 |
| Msa0625680 | Msa1400580 | 0.817203 | 3.725328e-52 | -8.615850e-47 |
| Msa0625680 | Msa1403420 | 0.828366 | 9.357462e-55 | -8.615850e-47 |
| Msa0625680 | Msa1419870 | 0.851476 | 8.655834e-61 | -8.615850e-47 |
| Msa0625680 | Msa1432420 | 0.803814 | 2.912799e-49 | -8.615850e-47 |
| Msa0625680 | Msa1432700 | 0.821394 | 4.132753e-53 | -8.615850e-47 |
| Msa0625680 | Msa1444310 | 0.812469 | 4.174411e-51 | -8.615850e-47 |
| Msa0625680 | Msa1454480 | 0.803075 | 4.144128e-49 | -8.615850e-47 |
| Msa0625680 | Msa1457920 | 0.858473 | 8.043939e-63 | -8.615850e-47 |
| Msa0123360 | Msa0625680 | 0.815882 | 7.362902e-52 | -8.615850e-47 |
| Msa0128860 | Msa0625680 | 0.816978 | 4.184628e-52 | -8.615850e-47 |
| Msa0137550 | Msa0625680 | 0.821439 | 4.036026e-53 | -8.615850e-47 |
| Msa0137990 | Msa0625680 | 0.804260 | 2.353267e-49 | -8.615850e-47 |
| Msa0140820 | Msa0625680 | 0.801158 | 1.027369e-48 | -8.615850e-47 |
| Msa0144370 | Msa0625680 | 0.808345 | 3.242557e-50 | -8.615850e-47 |
| Msa0145440 | Msa0625680 | 0.802222 | 6.216213e-49 | -8.615850e-47 |
| Msa0150820 | Msa0625680 | 0.832455 | 9.363228e-56 | -8.615850e-47 |
| Msa0159170 | Msa0625680 | 0.887615 | 1.221453e-72 | -8.615850e-47 |
| Msa0160550 | Msa0625680 | 0.800876 | 1.173513e-48 | -8.615850e-47 |
| Msa0165660 | Msa0625680 | 0.810327 | 1.217729e-50 | -8.615850e-47 |
| Msa0168230 | Msa0625680 | 0.835266 | 1.854559e-56 | -8.615850e-47 |
| Msa0172970 | Msa0625680 | 0.827082 | 1.903537e-54 | -8.615850e-47 |
| Msa0174730 | Msa0625680 | 0.816680 | 4.880604e-52 | -8.615850e-47 |
| Msa0183900 | Msa0625680 | 0.802952 | 4.394646e-49 | -8.615850e-47 |
| Msa0187120 | Msa0625680 | 0.826551 | 2.549958e-54 | -8.615850e-47 |
| Msa0189300 | Msa0625680 | 0.821387 | 4.148538e-53 | -8.615850e-47 |
| Msa0220720 | Msa0625680 | 0.859535 | 3.866995e-63 | -8.615850e-47 |
| Msa0228070 | Msa0625680 | 0.818586 | 1.814538e-52 | -8.615850e-47 |
| Msa0231980 | Msa0625680 | 0.813746 | 2.189811e-51 | -8.615850e-47 |
| Msa0232050 | Msa0625680 | 0.809047 | 2.294972e-50 | -8.615850e-47 |
| Msa0366890 | Msa0625680 | 0.830065 | 3.622998e-55 | -8.615850e-47 |
| Msa0385580 | Msa0625680 | 0.851613 | 7.917547e-61 | -8.615850e-47 |
| Msa0388700 | Msa0625680 | 0.857052 | 2.121585e-62 | -8.615850e-47 |
| Msa0395820 | Msa0625680 | 0.832229 | 1.065150e-55 | -8.615850e-47 |
| Msa0397540 | Msa0625680 | 0.807101 | 5.957540e-50 | -8.615850e-47 |
| Msa0398810 | Msa0625680 | 0.810960 | 8.888363e-51 | -8.615850e-47 |
| Msa0402650 | Msa0625680 | 0.829063 | 6.348479e-55 | -8.615850e-47 |
| Msa0402790 | Msa0625680 | 0.839803 | 1.273600e-57 | -8.615850e-47 |
| Msa0422840 | Msa0625680 | 0.801730 | 7.842729e-49 | -8.615850e-47 |
| Msa0468330 | Msa0625680 | 0.802713 | 4.922489e-49 | -8.615850e-47 |
| Msa0471440 | Msa0625680 | 0.822984 | 1.768396e-53 | -8.615850e-47 |
| Msa0471590 | Msa0625680 | 0.801403 | 9.152842e-49 | -8.615850e-47 |
| Msa0481530 | Msa0625680 | 0.808330 | 3.265114e-50 | -8.615850e-47 |
| Msa0482130 | Msa0625680 | 0.825411 | 4.756485e-54 | -8.615850e-47 |
| Msa0247550 | Msa0625680 | 0.808853 | 2.524801e-50 | -8.615850e-47 |
| Msa0262050 | Msa0625680 | 0.817950 | 2.527260e-52 | -8.615850e-47 |
| Msa0262310 | Msa0625680 | 0.832936 | 7.112819e-56 | -8.615850e-47 |
| Msa0271530 | Msa0625680 | 0.802654 | 5.063805e-49 | -8.615850e-47 |
| Msa0279220 | Msa0625680 | 0.802535 | 5.357100e-49 | -8.615850e-47 |
| Msa0280610 | Msa0625680 | 0.831780 | 1.374475e-55 | -8.615850e-47 |
| Msa0299870 | Msa0625680 | 0.854493 | 1.186316e-61 | -8.615850e-47 |
| Msa0309750 | Msa0625680 | 0.823992 | 1.027154e-53 | -8.615850e-47 |
| Msa0337240 | Msa0625680 | 0.843425 | 1.412334e-58 | -8.615850e-47 |
| Msa0337650 | Msa0625680 | 0.809266 | 2.060152e-50 | -8.615850e-47 |
| Msa0345350 | Msa0625680 | 0.809774 | 1.602228e-50 | -8.615850e-47 |
| Msa0351990 | Msa0625680 | 0.820597 | 6.304872e-53 | -8.615850e-47 |
| Msa0493410 | Msa0625680 | 0.837534 | 4.912946e-57 | -8.615850e-47 |
| Msa0497210 | Msa0625680 | 0.867145 | 1.697487e-65 | -8.615850e-47 |
| Msa0497490 | Msa0625680 | 0.826019 | 3.412956e-54 | -8.615850e-47 |
| Msa0518390 | Msa0625680 | 0.800956 | 1.129926e-48 | -8.615850e-47 |
| Msa0529830 | Msa0625680 | 0.828664 | 7.926766e-55 | -8.615850e-47 |
| Msa0529890 | Msa0625680 | 0.810140 | 1.336801e-50 | -8.615850e-47 |
| Msa0542090 | Msa0625680 | 0.825102 | 5.628827e-54 | -8.615850e-47 |
| Msa0542130 | Msa0625680 | 0.824123 | 9.572628e-54 | -8.615850e-47 |
| Msa0555450 | Msa0625680 | 0.841560 | 4.412284e-58 | -8.615850e-47 |
| Msa0556060 | Msa0625680 | 0.827739 | 1.324904e-54 | -8.615850e-47 |
| Msa0566100 | Msa0625680 | 0.813249 | 2.816632e-51 | -8.615850e-47 |
| Msa0581110 | Msa0625680 | 0.806413 | 8.327966e-50 | -8.615850e-47 |
| Msa0585510 | Msa0625680 | 0.819190 | 1.322950e-52 | -8.615850e-47 |
| Msa0589190 | Msa0625680 | 0.819115 | 1.375627e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625680 | MtrunA17_Chr4g0001071 | 89.496 | 238 | 20 | 2 | 1 | 234 | 1 | 237 | 8.09e-149 | 414 |
| Msa0625680 | MtrunA17_Chr1g0149801 | 44.503 | 191 | 102 | 4 | 45 | 233 | 45 | 233 | 3.31e-56 | 179 |
| Msa0625680 | MtrunA17_Chr5g0435861 | 38.506 | 174 | 91 | 4 | 74 | 232 | 82 | 254 | 1.76e-29 | 110 |
| Msa0625680 | MtrunA17_Chr7g0239661 | 33.175 | 211 | 127 | 5 | 33 | 233 | 48 | 254 | 6.72e-29 | 109 |
| Msa0625680 | MtrunA17_Chr5g0444341 | 25.434 | 173 | 111 | 6 | 69 | 234 | 54 | 215 | 9.61e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625680 | AT1G15870.1 | 52.653 | 245 | 102 | 5 | 1 | 234 | 1 | 242 | 1.11e-84 | 252 |
| Msa0625680 | AT1G80720.2 | 53.252 | 246 | 99 | 7 | 1 | 234 | 1 | 242 | 1.01e-80 | 242 |
| Msa0625680 | AT1G80720.1 | 58.763 | 194 | 74 | 4 | 43 | 234 | 1 | 190 | 4.81e-75 | 226 |
| Msa0625680 | AT4G31930.1 | 39.496 | 238 | 135 | 6 | 1 | 233 | 1 | 234 | 1.39e-51 | 167 |
| Msa0625680 | AT2G39795.1 | 29.289 | 239 | 162 | 4 | 2 | 233 | 12 | 250 | 9.75e-27 | 103 |
| Msa0625680 | AT3G55605.1 | 34.146 | 164 | 96 | 3 | 80 | 233 | 97 | 258 | 2.84e-25 | 100 |
| Msa0625680 | AT5G02050.1 | 29.952 | 207 | 130 | 6 | 41 | 233 | 62 | 267 | 3.53e-24 | 97.4 |
| Msa0625680 | AT5G05990.1 | 27.976 | 168 | 106 | 2 | 80 | 232 | 91 | 258 | 1.10e-19 | 85.5 |
| Msa0625680 | AT2G39790.1 | 27.149 | 221 | 146 | 6 | 18 | 232 | 28 | 239 | 2.37e-17 | 78.6 |
| Msa0625680 | AT4G32605.1 | 31.183 | 93 | 59 | 2 | 146 | 233 | 127 | 219 | 6.90e-13 | 66.2 |
Find 72 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTGACCATATTGTATTTA+TGG | 0.150777 | 4_3:+4893591 | Msa0625680:three_prime_UTR |
| AAGATTCTACTTATACTTAT+TGG | 0.184856 | 4_3:+4893815 | Msa0625680:three_prime_UTR |
| TTGGGAGATGTAAGTTCTTC+TGG | 0.225637 | 4_3:-4890046 | None:intergenic |
| CGAAAGCTTCTTTGCGCATT+TGG | 0.227889 | 4_3:-4890065 | None:intergenic |
| CTTGGAGATATTGACAATTA+AGG | 0.236484 | 4_3:-4892890 | None:intergenic |
| ATTTGCCAATGAAAACATTA+AGG | 0.265158 | 4_3:+4892780 | Msa0625680:CDS |
| AATGGGAATTTGGTTGATTA+GGG | 0.289613 | 4_3:-4889974 | None:intergenic |
| GAATGGGAATTTGGTTGATT+AGG | 0.302269 | 4_3:-4889975 | None:intergenic |
| GTTGATTCTTTACAGGGAAT+TGG | 0.305625 | 4_3:+4893271 | Msa0625680:intron |
| TCTTATTCAGCTGCTGTTCA+TGG | 0.331163 | 4_3:-4893752 | None:intergenic |
| CGGACAGTATAGTGATAAAA+AGG | 0.337671 | 4_3:+4892953 | Msa0625680:CDS |
| TTAGAAGTAGAAATTGTATA+AGG | 0.337923 | 4_3:+4893560 | Msa0625680:three_prime_UTR |
| GGATAGTCTTTACGATTTCT+TGG | 0.338117 | 4_3:+4893307 | Msa0625680:CDS |
| GTTGTTGTTGAATGGGAATT+TGG | 0.349399 | 4_3:-4889984 | None:intergenic |
| GTTGAAGCCACCATGTTTGA+TGG | 0.365174 | 4_3:+4892802 | Msa0625680:CDS |
| TTTACGATTTCTTGGAAGTA+AGG | 0.369810 | 4_3:+4893315 | Msa0625680:CDS |
| CGAAACAAACGTGCCATTGC+AGG | 0.372762 | 4_3:-4889937 | None:intergenic |
| GAAAGCTTCTTTGCGCATTT+GGG | 0.378478 | 4_3:-4890064 | None:intergenic |
| GGAATTGGATGATGAGTTGC+AGG | 0.386849 | 4_3:+4893286 | Msa0625680:CDS |
| ACGCGTTTCTCTTTGGGAAA+GGG | 0.389892 | 4_3:-4893630 | None:intergenic |
| TAGATTGATTCATTTCCATT+TGG | 0.406905 | 4_3:+4889875 | None:intergenic |
| CACGCGTTTCTCTTTGGGAA+AGG | 0.409361 | 4_3:-4893631 | None:intergenic |
| AATCATGTGCTCTGCTTGGC+CGG | 0.413847 | 4_3:+4892933 | Msa0625680:CDS |
| CGCGTTTCTCTTTGGGAAAG+GGG | 0.419587 | 4_3:-4893629 | None:intergenic |
| AGAAATTGTATAAGGTAAGT+AGG | 0.421027 | 4_3:+4893568 | Msa0625680:three_prime_UTR |
| AATTTCATTACGAAGAAGTC+TGG | 0.426508 | 4_3:-4890100 | None:intergenic |
| TTCGGTTCATTTGTGGTGGA+TGG | 0.428242 | 4_3:+4892721 | Msa0625680:CDS |
| TGACAAGTTCGGTTCATTTG+TGG | 0.433809 | 4_3:+4892714 | Msa0625680:CDS |
| GCATAGTCGTTGTTGTTGAA+TGG | 0.459987 | 4_3:-4889992 | None:intergenic |
| CTGGAGATGATTTGAGAAGA+AGG | 0.473022 | 4_3:-4890027 | None:intergenic |
| TTGCAGCCTACTGACAAGTT+CGG | 0.474006 | 4_3:+4892703 | Msa0625680:intron |
| TAGGATTTATAACAACCAAA+TGG | 0.483967 | 4_3:-4889890 | None:intergenic |
| AATGTAATCCATCGCTCACC+GGG | 0.484386 | 4_3:-4892748 | None:intergenic |
| AAGTAAACTTACTCAAAGTC+AGG | 0.487021 | 4_3:-4893024 | None:intergenic |
| ACTGAAGTCTATTTCAAAGA+AGG | 0.490124 | 4_3:+4893508 | Msa0625680:three_prime_UTR |
| CAATGTAATCCATCGCTCAC+CGG | 0.493071 | 4_3:-4892749 | None:intergenic |
| CTCAAAGTCAGGACCAGCAT+AGG | 0.500380 | 4_3:-4893013 | None:intergenic |
| CATAGTCGTTGTTGTTGAAT+GGG | 0.501011 | 4_3:-4889991 | None:intergenic |
| CAAGGGAGATGGTCATGTGC+TGG | 0.502080 | 4_3:+4892909 | Msa0625680:CDS |
| CAGCACATGACCATCTCCCT+TGG | 0.512206 | 4_3:-4892908 | None:intergenic |
| AACAGAGATCATAGGATGGA+TGG | 0.515569 | 4_3:+4893394 | Msa0625680:CDS |
| AAGGAGAAAACAGAGATCAT+AGG | 0.519039 | 4_3:+4893386 | Msa0625680:CDS |
| GTCAATATCTCCAAGGGAGA+TGG | 0.521988 | 4_3:+4892898 | Msa0625680:CDS |
| TTACGATTTCTTGGAAGTAA+GGG | 0.523724 | 4_3:+4893316 | Msa0625680:CDS |
| TGGAAATCATGTGCTCTGCT+TGG | 0.524404 | 4_3:+4892929 | Msa0625680:CDS |
| CAAGTTCGGTTCATTTGTGG+TGG | 0.534990 | 4_3:+4892717 | Msa0625680:CDS |
| AAAATACTTACAGGATTGGA+AGG | 0.538098 | 4_3:-4890147 | None:intergenic |
| TACAGGATTGGAAGGAGAAG+AGG | 0.540707 | 4_3:-4890139 | None:intergenic |
| ATGATTTGAGAAGAAGGAGA+AGG | 0.541837 | 4_3:-4890021 | None:intergenic |
| ATGACAGCTGAGCCCTATGC+TGG | 0.544341 | 4_3:+4893000 | Msa0625680:CDS |
| ATGGCCGACCCGGTGAGCGA+TGG | 0.552023 | 4_3:+4892740 | Msa0625680:CDS |
| TTTGTGGTGGATGGCCGACC+CGG | 0.552350 | 4_3:+4892730 | Msa0625680:CDS |
| GAAACAAACGTGCCATTGCA+GGG | 0.563269 | 4_3:-4889936 | None:intergenic |
| CTTAATTGTCAATATCTCCA+AGG | 0.564925 | 4_3:+4892891 | Msa0625680:CDS |
| TCAAAGTCAGGACCAGCATA+GGG | 0.570818 | 4_3:-4893012 | None:intergenic |
| TTAATTGTCAATATCTCCAA+GGG | 0.571494 | 4_3:+4892892 | Msa0625680:CDS |
| TACGATTTCTTGGAAGTAAG+GGG | 0.573631 | 4_3:+4893317 | Msa0625680:CDS |
| ACAAAAGAGATATGATCTCA+TGG | 0.581216 | 4_3:-4893484 | None:intergenic |
| GCGTTTCTCTTTGGGAAAGG+GGG | 0.587641 | 4_3:-4893628 | None:intergenic |
| AATTTCTACTTCTAAAGCAG+TGG | 0.605411 | 4_3:-4893552 | None:intergenic |
| TAATCCATCGCTCACCGGGT+CGG | 0.605600 | 4_3:-4892744 | None:intergenic |
| GGGTTTAGAATCAGAGACAA+GGG | 0.609305 | 4_3:-4889916 | None:intergenic |
| AGAAAACAGAGATCATAGGA+TGG | 0.614854 | 4_3:+4893390 | Msa0625680:CDS |
| AGGAACAGCTCCATCAAACA+TGG | 0.627059 | 4_3:-4892812 | None:intergenic |
| GATCATAGGATGGATGGAGA+AGG | 0.628625 | 4_3:+4893400 | Msa0625680:CDS |
| TAGATAACTGAGTCACAGCA+TGG | 0.638949 | 4_3:-4893882 | None:intergenic |
| TCTGATTCTAAACCCTGCAA+TGG | 0.643238 | 4_3:+4889924 | Msa0625680:exon |
| AATGAACCGAACTTGTCAGT+AGG | 0.644093 | 4_3:-4892709 | None:intergenic |
| AGGGTTTAGAATCAGAGACA+AGG | 0.654566 | 4_3:-4889917 | None:intergenic |
| ATGCGCAAAGAAGCTTTCGA+AGG | 0.659024 | 4_3:+4890069 | Msa0625680:CDS |
| AACAGCTCCATCAAACATGG+TGG | 0.722000 | 4_3:-4892809 | None:intergenic |
| GCATCAGTACATGAAACACA+AGG | 0.733324 | 4_3:+4893367 | Msa0625680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATCTTAATTTTACAAAAT+CGG | - | chr4_3:4890796-4890815 | None:intergenic | 10.0% |
| !!! | ATTTTGTAAAATTAAGATTT+AGG | + | chr4_3:4890796-4890815 | Msa0625680:intron | 10.0% |
| !!! | AGAACTTTTTACTTTTTTTA+AGG | + | chr4_3:4890263-4890282 | Msa0625680:intron | 15.0% |
| !! | AAGATGAAATAAAGTTAAAT+TGG | + | chr4_3:4890477-4890496 | Msa0625680:intron | 15.0% |
| !!! | ATATAAAGAATCTTTTTGAT+TGG | - | chr4_3:4891105-4891124 | None:intergenic | 15.0% |
| !!! | TTTATATTTTGTTATAGACA+TGG | + | chr4_3:4891118-4891137 | Msa0625680:intron | 15.0% |
| !!! | CAACTTAATTTTTTAAAATC+AGG | - | chr4_3:4891434-4891453 | None:intergenic | 15.0% |
| !!! | ATTTTGAAAAATAAAGTTGT+GGG | + | chr4_3:4891745-4891764 | Msa0625680:intron | 15.0% |
| !! | ATACAATCAATTTCAAAATA+CGG | - | chr4_3:4892254-4892273 | None:intergenic | 15.0% |
| !! | AAAAAAAATACTTACAGGAT+TGG | - | chr4_3:4890154-4890173 | None:intergenic | 20.0% |
| !! | GAGAAAAAAAAAATACTTAC+AGG | - | chr4_3:4890159-4890178 | None:intergenic | 20.0% |
| !!! | TTACTTTTTTTAAGGTAGTT+TGG | + | chr4_3:4890271-4890290 | Msa0625680:intron | 20.0% |
| !! | TTATGAAAATAAGCTCAAAA+CGG | + | chr4_3:4890543-4890562 | Msa0625680:intron | 20.0% |
| !!! | TTTGGAATAACTTAAGAAAA+CGG | - | chr4_3:4890627-4890646 | None:intergenic | 20.0% |
| !!! | AGTTAAACTGTTTTTTGTAT+AGG | + | chr4_3:4890938-4890957 | Msa0625680:intron | 20.0% |
| !!! | AATTTTTTAAAATCAGGCAT+GGG | - | chr4_3:4891428-4891447 | None:intergenic | 20.0% |
| !!! | TAATTTTTTAAAATCAGGCA+TGG | - | chr4_3:4891429-4891448 | None:intergenic | 20.0% |
| !!! | CAACTTTATTTTTCAAAATC+AGG | - | chr4_3:4891744-4891763 | None:intergenic | 20.0% |
| !!! | GATTTTGAAAAATAAAGTTG+TGG | + | chr4_3:4891744-4891763 | Msa0625680:intron | 20.0% |
| !!! | TTTAGCTTTTTCCTAAATAT+CGG | + | chr4_3:4891789-4891808 | Msa0625680:intron | 20.0% |
| !!! | AAGAATATTTAGAGTTTGTT+TGG | + | chr4_3:4891824-4891843 | Msa0625680:intron | 20.0% |
| !!! | TAATTTTACAAAATCAGGTA+TGG | - | chr4_3:4891990-4892009 | None:intergenic | 20.0% |
| !!! | CAACTTAATTTTACAAAATC+AGG | - | chr4_3:4891995-4892014 | None:intergenic | 20.0% |
| !!! | CCAAAATAGTATATTTTCAT+CGG | - | chr4_3:4892210-4892229 | None:intergenic | 20.0% |
| !!! | ATGGTGTTTTTATTTCTAAA+AGG | + | chr4_3:4892517-4892536 | Msa0625680:intron | 20.0% |
| !!! | ACTATTGCATAATAGAATTT+TGG | + | chr4_3:4893209-4893228 | Msa0625680:intron | 20.0% |
| !! | TTAGAAGTAGAAATTGTATA+AGG | + | chr4_3:4893560-4893579 | Msa0625680:three_prime_UTR | 20.0% |
| !! | CAAAAACCATAAATACAATA+TGG | - | chr4_3:4893600-4893619 | None:intergenic | 20.0% |
| !! | AAGATTCTACTTATACTTAT+TGG | + | chr4_3:4893815-4893834 | Msa0625680:three_prime_UTR | 20.0% |
| ! | TAGGATTTATAACAACCAAA+TGG | - | chr4_3:4889893-4889912 | None:intergenic | 25.0% |
| !!! | GATTTTAATTTCCCTGTTTT+TGG | + | chr4_3:4890379-4890398 | Msa0625680:intron | 25.0% |
| ! | AAGTTGTTTATCCAAAAACA+GGG | - | chr4_3:4890393-4890412 | None:intergenic | 25.0% |
| ! | TAAGTTGTTTATCCAAAAAC+AGG | - | chr4_3:4890394-4890413 | None:intergenic | 25.0% |
| ! | ATAAGCAATTGGAAATTGTT+TGG | - | chr4_3:4890645-4890664 | None:intergenic | 25.0% |
| !! | ACTTATTTGAGTTTATCTAC+TGG | - | chr4_3:4890669-4890688 | None:intergenic | 25.0% |
| !!! | TTAGCTTTTTCCTAAAAATC+AGG | + | chr4_3:4890840-4890859 | Msa0625680:intron | 25.0% |
| ! | AAACATCTTGTGTAAAAAAC+AGG | + | chr4_3:4891281-4891300 | Msa0625680:intron | 25.0% |
| ! | AACATCTTGTGTAAAAAACA+GGG | + | chr4_3:4891282-4891301 | Msa0625680:intron | 25.0% |
| ! | TAAGACTCTGTTTGAATAAA+GGG | - | chr4_3:4891347-4891366 | None:intergenic | 25.0% |
| !!! | AACTTAACTTGCTATAGATA+TGG | + | chr4_3:4891634-4891653 | Msa0625680:intron | 25.0% |
| ! | ATTCAGATTAAGACAATAGT+TGG | - | chr4_3:4891701-4891720 | None:intergenic | 25.0% |
| !! | GTCTTAATCTGAATGTTTTT+AGG | + | chr4_3:4891707-4891726 | Msa0625680:intron | 25.0% |
| !!! | TTAGCTTTTTCCTAAATATC+GGG | + | chr4_3:4891790-4891809 | Msa0625680:intron | 25.0% |
| ! | AGTTGAAATTGAATGGATAA+TGG | + | chr4_3:4891929-4891948 | Msa0625680:intron | 25.0% |
| !! | TTTTCTTATCATGGTAGAAA+GGG | + | chr4_3:4891953-4891972 | Msa0625680:intron | 25.0% |
| ! | TAGTTTCTTCCTAATAATCA+GGG | + | chr4_3:4892042-4892061 | Msa0625680:intron | 25.0% |
| !! | CCGATGAAAATATACTATTT+TGG | + | chr4_3:4892207-4892226 | Msa0625680:intron | 25.0% |
| ! | TCAAAATACGGTTATAAAAG+TGG | - | chr4_3:4892242-4892261 | None:intergenic | 25.0% |
| ! | TAGTTAGAACTAGAGTTAAA+GGG | - | chr4_3:4892293-4892312 | None:intergenic | 25.0% |
| ! | TTAGTTAGAACTAGAGTTAA+AGG | - | chr4_3:4892294-4892313 | None:intergenic | 25.0% |
| !!! | TTGAAGACTTGATATTTTGA+TGG | + | chr4_3:4892484-4892503 | Msa0625680:intron | 25.0% |
| ! | TCTTGTAGACATGAATAATT+AGG | + | chr4_3:4892667-4892686 | Msa0625680:intron | 25.0% |
| ! | CTTGTAGACATGAATAATTA+GGG | + | chr4_3:4892668-4892687 | Msa0625680:intron | 25.0% |
| ! | ATTTGCCAATGAAAACATTA+AGG | + | chr4_3:4892780-4892799 | Msa0625680:CDS | 25.0% |
| !! | TTCAACCTTAATGTTTTCAT+TGG | - | chr4_3:4892788-4892807 | None:intergenic | 25.0% |
| ! | TTAATTGTCAATATCTCCAA+GGG | + | chr4_3:4892892-4892911 | Msa0625680:CDS | 25.0% |
| ! | TGATACCATTTGTTCAAATT+CGG | - | chr4_3:4893132-4893151 | None:intergenic | 25.0% |
| ! | TGTAAAGAATCAACATTAAG+AGG | - | chr4_3:4893265-4893284 | None:intergenic | 25.0% |
| !!! | TCTTAATGTTGATTCTTTAC+AGG | + | chr4_3:4893264-4893283 | Msa0625680:intron | 25.0% |
| !!! | CTTAATGTTGATTCTTTACA+GGG | + | chr4_3:4893265-4893284 | Msa0625680:intron | 25.0% |
| ! | AGAAATTGTATAAGGTAAGT+AGG | + | chr4_3:4893568-4893587 | Msa0625680:three_prime_UTR | 25.0% |
| ! | AAGTGACCATATTGTATTTA+TGG | + | chr4_3:4893591-4893610 | Msa0625680:three_prime_UTR | 25.0% |
| !! | TGTATTTATGGTTTTTGCTT+CGG | + | chr4_3:4893603-4893622 | Msa0625680:three_prime_UTR | 25.0% |
| !! | ATGTCAGAAACTATCTTTTA+TGG | + | chr4_3:4893659-4893678 | Msa0625680:three_prime_UTR | 25.0% |
| !! | TTTTATGGAAGGTTTATTCT+CGG | + | chr4_3:4893674-4893693 | Msa0625680:three_prime_UTR | 25.0% |
| !! | CTGTTTTGTCAATTAAATCA+AGG | - | chr4_3:4893858-4893877 | None:intergenic | 25.0% |
| ! | TTTGGTTGATTAGGGTTTTT+CGG | - | chr4_3:4889969-4889988 | None:intergenic | 30.0% |
| AATGGGAATTTGGTTGATTA+GGG | - | chr4_3:4889977-4889996 | None:intergenic | 30.0% | |
| AATTTCATTACGAAGAAGTC+TGG | - | chr4_3:4890103-4890122 | None:intergenic | 30.0% | |
| AAAATACTTACAGGATTGGA+AGG | - | chr4_3:4890150-4890169 | None:intergenic | 30.0% | |
| !! | TTCTCTTGTTGTTTGTGTAA+TGG | + | chr4_3:4890174-4890193 | Msa0625680:intron | 30.0% |
| !! | TCTCTTGTTGTTTGTGTAAT+GGG | + | chr4_3:4890175-4890194 | Msa0625680:intron | 30.0% |
| !!! | TGTGTAATGGGTTTTTGTTA+TGG | + | chr4_3:4890187-4890206 | Msa0625680:intron | 30.0% |
| !!! | GTGTAATGGGTTTTTGTTAT+GGG | + | chr4_3:4890188-4890207 | Msa0625680:intron | 30.0% |
| !! | GGTTTTTGTTATGGGAAAAT+GGG | + | chr4_3:4890196-4890215 | Msa0625680:intron | 30.0% |
| CTTTGTTCTTGTTAGAATCA+TGG | + | chr4_3:4890232-4890251 | Msa0625680:intron | 30.0% | |
| AAATAAGCTCAAAACGGTTT+AGG | + | chr4_3:4890549-4890568 | Msa0625680:intron | 30.0% | |
| TATCTACTGGTATAAGCAAT+TGG | - | chr4_3:4890656-4890675 | None:intergenic | 30.0% | |
| CGTCTATAACAAAAGATGAA+GGG | - | chr4_3:4890705-4890724 | None:intergenic | 30.0% | |
| ACGTCTATAACAAAAGATGA+AGG | - | chr4_3:4890706-4890725 | None:intergenic | 30.0% | |
| ATTCAGATGAAGACAATGTT+AGG | - | chr4_3:4890752-4890771 | None:intergenic | 30.0% | |
| ! | GATTTAGGATAAAGCTACAT+TGG | + | chr4_3:4890811-4890830 | Msa0625680:intron | 30.0% |
| ! | CAAAATATTTGGAGCTAGTT+TGG | + | chr4_3:4890874-4890893 | Msa0625680:intron | 30.0% |
| ATTCAAACAGAGTCTTAAAG+TGG | + | chr4_3:4891195-4891214 | Msa0625680:intron | 30.0% | |
| TTCAAACAGAGTCTTAAAGT+GGG | + | chr4_3:4891196-4891215 | Msa0625680:intron | 30.0% | |
| ACATCTTGTGTAAAAAACAG+GGG | + | chr4_3:4891283-4891302 | Msa0625680:intron | 30.0% | |
| CTAAGACTCTGTTTGAATAA+AGG | - | chr4_3:4891348-4891367 | None:intergenic | 30.0% | |
| CTTCTTCCTAAAATGTGTTT+AGG | + | chr4_3:4891397-4891416 | Msa0625680:intron | 30.0% | |
| AGTTATGAAACCCGATATTT+AGG | - | chr4_3:4891803-4891822 | None:intergenic | 30.0% | |
| TTTGTTTGGATAAACTGTTG+TGG | + | chr4_3:4891838-4891857 | Msa0625680:intron | 30.0% | |
| TCTCAGAAGTTGAAATTGAA+TGG | + | chr4_3:4891922-4891941 | Msa0625680:intron | 30.0% | |
| !! | GATAATGGCTTTTCTTATCA+TGG | + | chr4_3:4891944-4891963 | Msa0625680:intron | 30.0% |
| ! | CTTTTCTTATCATGGTAGAA+AGG | + | chr4_3:4891952-4891971 | Msa0625680:intron | 30.0% |
| GTAGTTTCTTCCTAATAATC+AGG | + | chr4_3:4892041-4892060 | Msa0625680:intron | 30.0% | |
| AGTTTCTTCCTAATAATCAG+GGG | + | chr4_3:4892043-4892062 | Msa0625680:intron | 30.0% | |
| CTTAATTGTGTAAACTGTTG+TGG | + | chr4_3:4892160-4892179 | Msa0625680:intron | 30.0% | |
| !!! | CCAAGTTTGTTTTAGATTCT+AGG | - | chr4_3:4892436-4892455 | None:intergenic | 30.0% |
| ! | CCTAGAATCTAAAACAAACT+TGG | + | chr4_3:4892433-4892452 | Msa0625680:intron | 30.0% |
| !!! | ATTCTCTAGCTTTTTTCAGT+TGG | + | chr4_3:4892628-4892647 | Msa0625680:intron | 30.0% |
| !!! | AGCTTTTTTCAGTTGGATTT+TGG | + | chr4_3:4892635-4892654 | Msa0625680:intron | 30.0% |
| CTTGGAGATATTGACAATTA+AGG | - | chr4_3:4892893-4892912 | None:intergenic | 30.0% | |
| CTTAATTGTCAATATCTCCA+AGG | + | chr4_3:4892891-4892910 | Msa0625680:CDS | 30.0% | |
| ! | CTTTTTATCACTATACTGTC+CGG | - | chr4_3:4892955-4892974 | None:intergenic | 30.0% |
| AAGTAAACTTACTCAAAGTC+AGG | - | chr4_3:4893027-4893046 | None:intergenic | 30.0% | |
| TATAGCCGAATTTGAACAAA+TGG | + | chr4_3:4893124-4893143 | Msa0625680:intron | 30.0% | |
| ATGCGCTATTTAGTACAAAA+TGG | + | chr4_3:4893166-4893185 | Msa0625680:intron | 30.0% | |
| ! | TACAAAATGGTGTCAAATAG+AGG | + | chr4_3:4893179-4893198 | Msa0625680:intron | 30.0% |
| TTTACGATTTCTTGGAAGTA+AGG | + | chr4_3:4893315-4893334 | Msa0625680:CDS | 30.0% | |
| TTACGATTTCTTGGAAGTAA+GGG | + | chr4_3:4893316-4893335 | Msa0625680:CDS | 30.0% | |
| ACAAAAGAGATATGATCTCA+TGG | - | chr4_3:4893487-4893506 | None:intergenic | 30.0% | |
| ACTGAAGTCTATTTCAAAGA+AGG | + | chr4_3:4893508-4893527 | Msa0625680:three_prime_UTR | 30.0% | |
| !! | AATTTCTACTTCTAAAGCAG+TGG | - | chr4_3:4893555-4893574 | None:intergenic | 30.0% |
| ! | CAGAAACTATCTTTTATGGA+AGG | + | chr4_3:4893663-4893682 | Msa0625680:three_prime_UTR | 30.0% |
| GAATGGGAATTTGGTTGATT+AGG | - | chr4_3:4889978-4889997 | None:intergenic | 35.0% | |
| ! | GTTGTTGTTGAATGGGAATT+TGG | - | chr4_3:4889987-4890006 | None:intergenic | 35.0% |
| ! | CATAGTCGTTGTTGTTGAAT+GGG | - | chr4_3:4889994-4890013 | None:intergenic | 35.0% |
| ATGATTTGAGAAGAAGGAGA+AGG | - | chr4_3:4890024-4890043 | None:intergenic | 35.0% | |
| !! | GGGTTTTTGTTATGGGAAAA+TGG | + | chr4_3:4890195-4890214 | Msa0625680:intron | 35.0% |
| TTGCATAAGCTAAACTCTCT+TGG | + | chr4_3:4890319-4890338 | Msa0625680:intron | 35.0% | |
| ATAAGCTAAACTCTCTTGGA+TGG | + | chr4_3:4890323-4890342 | Msa0625680:intron | 35.0% | |
| CGTCGTAGCTACAAAATATT+TGG | + | chr4_3:4890863-4890882 | Msa0625680:intron | 35.0% | |
| ! | ATAAGCACTTGGAGACTTTT+TGG | - | chr4_3:4891059-4891078 | None:intergenic | 35.0% |
| TATCTACCAACATAAGCACT+TGG | - | chr4_3:4891070-4891089 | None:intergenic | 35.0% | |
| ! | GAAGCTCCTAAACACATTTT+AGG | - | chr4_3:4891406-4891425 | None:intergenic | 35.0% |
| ! | TTTAGCTTCTTCCTACAATC+AGG | + | chr4_3:4891478-4891497 | Msa0625680:intron | 35.0% |
| TAGCTATGAAACCTGATTGT+AGG | - | chr4_3:4891492-4891511 | None:intergenic | 35.0% | |
| CAGGTTTCATAGCTACAAAA+TGG | + | chr4_3:4891497-4891516 | Msa0625680:intron | 35.0% | |
| ! | TACAAAATGGTTAGCTAGTG+CGG | + | chr4_3:4891510-4891529 | Msa0625680:intron | 35.0% |
| TTATCATGGTAGAAAGGGTA+AGG | + | chr4_3:4891958-4891977 | Msa0625680:intron | 35.0% | |
| ! | CTAGTTTGTGTAAACTGTTG+TGG | + | chr4_3:4892089-4892108 | Msa0625680:intron | 35.0% |
| AGTAAAGACAAACAGTGCAT+TGG | - | chr4_3:4892465-4892484 | None:intergenic | 35.0% | |
| !! | TTTTGATGGCAATAAGTCGA+TGG | + | chr4_3:4892498-4892517 | Msa0625680:intron | 35.0% |
| TCTTTGCAACTAGTATCGTT+TGG | + | chr4_3:4892601-4892620 | Msa0625680:intron | 35.0% | |
| CTTTGCAACTAGTATCGTTT+GGG | + | chr4_3:4892602-4892621 | Msa0625680:intron | 35.0% | |
| TTTGCAACTAGTATCGTTTG+GGG | + | chr4_3:4892603-4892622 | Msa0625680:intron | 35.0% | |
| CGGACAGTATAGTGATAAAA+AGG | + | chr4_3:4892953-4892972 | Msa0625680:CDS | 35.0% | |
| TTGTACTAAATAGCGCATCA+CGG | - | chr4_3:4893164-4893183 | None:intergenic | 35.0% | |
| ! | GTTGATTCTTTACAGGGAAT+TGG | + | chr4_3:4893271-4893290 | Msa0625680:intron | 35.0% |
| GGATAGTCTTTACGATTTCT+TGG | + | chr4_3:4893307-4893326 | Msa0625680:CDS | 35.0% | |
| TACGATTTCTTGGAAGTAAG+GGG | + | chr4_3:4893317-4893336 | Msa0625680:CDS | 35.0% | |
| AAGGAGAAAACAGAGATCAT+AGG | + | chr4_3:4893386-4893405 | Msa0625680:CDS | 35.0% | |
| AGAAAACAGAGATCATAGGA+TGG | + | chr4_3:4893390-4893409 | Msa0625680:CDS | 35.0% | |
| ! | GAATCAGAGACAAGGGTTTT+AGG | - | chr4_3:4889912-4889931 | None:intergenic | 40.0% |
| ! | GGGTTTAGAATCAGAGACAA+GGG | - | chr4_3:4889919-4889938 | None:intergenic | 40.0% |
| ! | AGGGTTTAGAATCAGAGACA+AGG | - | chr4_3:4889920-4889939 | None:intergenic | 40.0% |
| TCTGATTCTAAACCCTGCAA+TGG | + | chr4_3:4889924-4889943 | Msa0625680:exon | 40.0% | |
| ! | GCATAGTCGTTGTTGTTGAA+TGG | - | chr4_3:4889995-4890014 | None:intergenic | 40.0% |
| CTGGAGATGATTTGAGAAGA+AGG | - | chr4_3:4890030-4890049 | None:intergenic | 40.0% | |
| TTGGGAGATGTAAGTTCTTC+TGG | - | chr4_3:4890049-4890068 | None:intergenic | 40.0% | |
| GAAAGCTTCTTTGCGCATTT+GGG | - | chr4_3:4890067-4890086 | None:intergenic | 40.0% | |
| ! | GAGCTAGTTTGGAAAAACTG+TGG | + | chr4_3:4890885-4890904 | Msa0625680:intron | 40.0% |
| AAGTCTCCAAGTGCTTATGT+TGG | + | chr4_3:4891061-4891080 | Msa0625680:intron | 40.0% | |
| CTTGTGTAAAAAACAGGGGA+AGG | + | chr4_3:4891287-4891306 | Msa0625680:intron | 40.0% | |
| CAATACACCAATTAGTGCAC+CGG | + | chr4_3:4891317-4891336 | Msa0625680:intron | 40.0% | |
| AATACACCAATTAGTGCACC+GGG | + | chr4_3:4891318-4891337 | Msa0625680:intron | 40.0% | |
| TTCCTAATAATCAGGGGTCA+TGG | + | chr4_3:4892049-4892068 | Msa0625680:intron | 40.0% | |
| AATGAACCGAACTTGTCAGT+AGG | - | chr4_3:4892712-4892731 | None:intergenic | 40.0% | |
| TGACAAGTTCGGTTCATTTG+TGG | + | chr4_3:4892714-4892733 | Msa0625680:CDS | 40.0% | |
| GCATCAGTACATGAAACACA+AGG | + | chr4_3:4893367-4893386 | Msa0625680:CDS | 40.0% | |
| AACAGAGATCATAGGATGGA+TGG | + | chr4_3:4893394-4893413 | Msa0625680:CDS | 40.0% | |
| ! | GTTTTCACGCGTTTCTCTTT+GGG | - | chr4_3:4893639-4893658 | None:intergenic | 40.0% |
| ! | TGTTTTCACGCGTTTCTCTT+TGG | - | chr4_3:4893640-4893659 | None:intergenic | 40.0% |
| TCTTATTCAGCTGCTGTTCA+TGG | - | chr4_3:4893755-4893774 | None:intergenic | 40.0% | |
| TAGATAACTGAGTCACAGCA+TGG | - | chr4_3:4893885-4893904 | None:intergenic | 40.0% | |
| ! | GAAACAAACGTGCCATTGCA+GGG | - | chr4_3:4889939-4889958 | None:intergenic | 45.0% |
| CGAAAGCTTCTTTGCGCATT+TGG | - | chr4_3:4890068-4890087 | None:intergenic | 45.0% | |
| ATGCGCAAAGAAGCTTTCGA+AGG | + | chr4_3:4890069-4890088 | Msa0625680:CDS | 45.0% | |
| TACAGGATTGGAAGGAGAAG+AGG | - | chr4_3:4890142-4890161 | None:intergenic | 45.0% | |
| ! | AGCTACGACGCCTGATTTTT+AGG | - | chr4_3:4890853-4890872 | None:intergenic | 45.0% |
| GAGTCTTAAAGTGGGAACCT+TGG | + | chr4_3:4891204-4891223 | Msa0625680:intron | 45.0% | |
| ! | CTTGTTGTCACGTGACTGAA+AGG | + | chr4_3:4891239-4891258 | Msa0625680:intron | 45.0% |
| TGTTTGAATAAAGGGCAGCC+CGG | - | chr4_3:4891339-4891358 | None:intergenic | 45.0% | |
| AGCCATGACCCCTGATTATT+AGG | - | chr4_3:4892054-4892073 | None:intergenic | 45.0% | |
| TTGCAGCCTACTGACAAGTT+CGG | + | chr4_3:4892703-4892722 | Msa0625680:intron | 45.0% | |
| CAAGTTCGGTTCATTTGTGG+TGG | + | chr4_3:4892717-4892736 | Msa0625680:CDS | 45.0% | |
| ! | TTCGGTTCATTTGTGGTGGA+TGG | + | chr4_3:4892721-4892740 | Msa0625680:CDS | 45.0% |
| AATGTAATCCATCGCTCACC+GGG | - | chr4_3:4892751-4892770 | None:intergenic | 45.0% | |
| CAATGTAATCCATCGCTCAC+CGG | - | chr4_3:4892752-4892771 | None:intergenic | 45.0% | |
| GTTGAAGCCACCATGTTTGA+TGG | + | chr4_3:4892802-4892821 | Msa0625680:CDS | 45.0% | |
| AACAGCTCCATCAAACATGG+TGG | - | chr4_3:4892812-4892831 | None:intergenic | 45.0% | |
| AGGAACAGCTCCATCAAACA+TGG | - | chr4_3:4892815-4892834 | None:intergenic | 45.0% | |
| GTTCCTGCTCCGAAAAAAAG+TGG | + | chr4_3:4892829-4892848 | Msa0625680:CDS | 45.0% | |
| ! | TCCGAAAAAAAGTGGTGGTG+TGG | + | chr4_3:4892837-4892856 | Msa0625680:CDS | 45.0% |
| !!! | GCCACACCACCACTTTTTTT+CGG | - | chr4_3:4892841-4892860 | None:intergenic | 45.0% |
| GTCAATATCTCCAAGGGAGA+TGG | + | chr4_3:4892898-4892917 | Msa0625680:CDS | 45.0% | |
| TGGAAATCATGTGCTCTGCT+TGG | + | chr4_3:4892929-4892948 | Msa0625680:CDS | 45.0% | |
| TCAAAGTCAGGACCAGCATA+GGG | - | chr4_3:4893015-4893034 | None:intergenic | 45.0% | |
| GGAATTGGATGATGAGTTGC+AGG | + | chr4_3:4893286-4893305 | Msa0625680:CDS | 45.0% | |
| GATCATAGGATGGATGGAGA+AGG | + | chr4_3:4893400-4893419 | Msa0625680:CDS | 45.0% | |
| ! | ACGCGTTTCTCTTTGGGAAA+GGG | - | chr4_3:4893633-4893652 | None:intergenic | 45.0% |
| ! | CGAAACAAACGTGCCATTGC+AGG | - | chr4_3:4889940-4889959 | None:intergenic | 50.0% |
| ACAAGTTTACCGTTGCGCCA+AGG | - | chr4_3:4891224-4891243 | None:intergenic | 50.0% | |
| AAGGTCACGAGGTCAAGTCA+AGG | + | chr4_3:4891258-4891277 | Msa0625680:intron | 50.0% | |
| !!! | CCACCACTTTTTTTCGGAGC+AGG | - | chr4_3:4892835-4892854 | None:intergenic | 50.0% |
| CCTGCTCCGAAAAAAAGTGG+TGG | + | chr4_3:4892832-4892851 | Msa0625680:CDS | 50.0% | |
| AATCATGTGCTCTGCTTGGC+CGG | + | chr4_3:4892933-4892952 | Msa0625680:CDS | 50.0% | |
| CTCAAAGTCAGGACCAGCAT+AGG | - | chr4_3:4893016-4893035 | None:intergenic | 50.0% | |
| ! | GCGTTTCTCTTTGGGAAAGG+GGG | - | chr4_3:4893631-4893650 | None:intergenic | 50.0% |
| ! | CGCGTTTCTCTTTGGGAAAG+GGG | - | chr4_3:4893632-4893651 | None:intergenic | 50.0% |
| ! | CACGCGTTTCTCTTTGGGAA+AGG | - | chr4_3:4893634-4893653 | None:intergenic | 50.0% |
| AAGTGGGAACCTTGGCGCAA+CGG | + | chr4_3:4891212-4891231 | Msa0625680:intron | 55.0% | |
| CACGTGACTGAAAGGTCACG+AGG | + | chr4_3:4891247-4891266 | Msa0625680:intron | 55.0% | |
| TAATCCATCGCTCACCGGGT+CGG | - | chr4_3:4892747-4892766 | None:intergenic | 55.0% | |
| CAGCACATGACCATCTCCCT+TGG | - | chr4_3:4892911-4892930 | None:intergenic | 55.0% | |
| CAAGGGAGATGGTCATGTGC+TGG | + | chr4_3:4892909-4892928 | Msa0625680:CDS | 55.0% | |
| ATGACAGCTGAGCCCTATGC+TGG | + | chr4_3:4893000-4893019 | Msa0625680:CDS | 55.0% | |
| !! | TTTGTGGTGGATGGCCGACC+CGG | + | chr4_3:4892730-4892749 | Msa0625680:CDS | 60.0% |
| GGGCAGCCCGGTGCACTAAT+TGG | - | chr4_3:4891327-4891346 | None:intergenic | 65.0% | |
| ATGGCCGACCCGGTGAGCGA+TGG | + | chr4_3:4892740-4892759 | Msa0625680:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 4889877 | 4893912 | 4889877 | ID=Msa0625680;Name=Msa0625680 |
| chr4_3 | mRNA | 4889877 | 4893912 | 4889877 | ID=Msa0625680-mRNA-1;Parent=Msa0625680;Name=Msa0625680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=66|1|1|1|1|1|3|464|234 |
| chr4_3 | exon | 4889877 | 4890158 | 4889877 | ID=Msa0625680-mRNA-1:exon:1348;Parent=Msa0625680-mRNA-1 |
| chr4_3 | exon | 4892709 | 4893034 | 4892709 | ID=Msa0625680-mRNA-1:exon:1349;Parent=Msa0625680-mRNA-1 |
| chr4_3 | exon | 4893286 | 4893912 | 4893286 | ID=Msa0625680-mRNA-1:exon:1350;Parent=Msa0625680-mRNA-1 |
| chr4_3 | five_prime_UTR | 4889877 | 4889942 | 4889877 | ID=Msa0625680-mRNA-1:five_prime_utr;Parent=Msa0625680-mRNA-1 |
| chr4_3 | CDS | 4889943 | 4890158 | 4889943 | ID=Msa0625680-mRNA-1:cds;Parent=Msa0625680-mRNA-1 |
| chr4_3 | CDS | 4892709 | 4893034 | 4892709 | ID=Msa0625680-mRNA-1:cds;Parent=Msa0625680-mRNA-1 |
| chr4_3 | CDS | 4893286 | 4893448 | 4893286 | ID=Msa0625680-mRNA-1:cds;Parent=Msa0625680-mRNA-1 |
| chr4_3 | three_prime_UTR | 4893449 | 4893912 | 4893449 | ID=Msa0625680-mRNA-1:three_prime_utr;Parent=Msa0625680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
