AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0630500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0630500 MtrunA17_Chr4g0008061 99.670 303 1 0 1 303 1 303 0.0 618
Msa0630500 MtrunA17_Chr7g0241521 88.667 300 34 0 4 303 6 305 0.0 560
Msa0630500 MtrunA17_Chr3g0103681 75.676 296 71 1 1 295 1 296 2.19e-159 446
Msa0630500 MtrunA17_Chr3g0133111 36.246 309 173 4 15 300 6 313 2.65e-60 194
Msa0630500 MtrunA17_Chr3g0133111 27.222 180 101 4 122 271 5 184 7.28e-11 62.0
Msa0630500 MtrunA17_Chr5g0412401 35.873 315 171 3 15 298 6 320 2.66e-60 195
Msa0630500 MtrunA17_Chr8g0367641 36.538 312 170 6 15 300 6 315 8.59e-59 191
Msa0630500 MtrunA17_Chr1g0196921 36.111 288 169 5 18 297 17 297 3.23e-58 189
Msa0630500 MtrunA17_Chr1g0196921 29.787 188 120 3 118 296 13 197 1.52e-15 75.5
Msa0630500 MtrunA17_Chr8g0378951 32.192 292 177 4 15 299 21 298 5.24e-39 139
Msa0630500 MtrunA17_Chr4g0028531 28.852 305 185 10 17 303 24 314 1.99e-31 119
Msa0630500 MtrunA17_Chr4g0028531 28.495 186 115 6 112 287 15 192 3.81e-11 62.8
Msa0630500 MtrunA17_Chr1g0196161 34.270 178 105 2 126 297 4 175 1.91e-28 107
Msa0630500 MtrunA17_Chr8g0372531 28.920 287 175 7 31 298 30 306 1.74e-25 103
Msa0630500 MtrunA17_Chr7g0252401 32.624 282 158 8 25 295 217 477 3.98e-24 101
Msa0630500 MtrunA17_Chr2g0296061 23.899 318 203 7 16 300 16 327 2.17e-23 97.8
Msa0630500 MtrunA17_Chr4g0067231 25.857 321 197 10 16 301 15 329 2.40e-23 97.8
Msa0630500 MtrunA17_Chr4g0067231 26.267 217 130 6 3 201 117 321 7.38e-12 65.1
Msa0630500 MtrunA17_Chr1g0195101 28.767 292 178 10 27 303 33 309 1.42e-22 95.5
Msa0630500 MtrunA17_Chr4g0006851 25.357 280 186 7 26 296 100 365 2.99e-22 95.5
Msa0630500 MtrunA17_Chr7g0269701 27.551 294 189 8 16 296 23 305 1.27e-20 90.1
Msa0630500 MtrunA17_Chr5g0411411 29.643 280 171 10 31 294 25 294 2.80e-20 89.0
Msa0630500 MtrunA17_Chr5g0411411 26.500 200 132 3 110 296 2 199 2.02e-15 75.1
Msa0630500 MtrunA17_Chr5g0411411 27.225 191 126 4 17 205 118 297 1.91e-14 72.4
Msa0630500 MtrunA17_Chr7g0242311 24.597 248 172 6 29 275 101 334 3.37e-20 89.7
Msa0630500 MtrunA17_Chr7g0242311 25.758 198 126 3 8 205 180 356 2.08e-11 63.9
Msa0630500 MtrunA17_Chr7g0275411 27.164 335 199 11 3 297 5 334 4.84e-20 89.0
Msa0630500 MtrunA17_Chr7g0240341 25.503 298 199 8 20 302 30 319 9.99e-20 87.8
Msa0630500 MtrunA17_Chr8g0366791 28.772 285 167 10 31 294 25 294 1.44e-19 87.0
Msa0630500 MtrunA17_Chr8g0366791 29.327 208 131 4 110 303 2 207 2.71e-19 86.3
Msa0630500 MtrunA17_Chr8g0366791 27.638 199 138 3 9 205 103 297 4.18e-15 74.3
Msa0630500 MtrunA17_Chr3g0135801 25.547 274 193 4 31 296 50 320 2.04e-19 87.0
Msa0630500 MtrunA17_Chr5g0396801 25.552 317 192 9 9 294 32 335 2.65e-19 86.7
Msa0630500 MtrunA17_Chr5g0396801 26.471 204 131 4 15 205 141 338 6.18e-14 71.2
Msa0630500 MtrunA17_Chr8g0347451 25.305 328 198 10 2 294 35 350 2.32e-18 84.3
Msa0630500 MtrunA17_Chr8g0347451 27.184 206 129 3 15 205 154 353 5.24e-16 77.4
Msa0630500 MtrunA17_Chr8g0383321 27.143 280 157 8 26 296 63 304 4.10e-18 83.2
Msa0630500 MtrunA17_Chr8g0385571 27.891 294 179 10 15 295 227 500 6.75e-18 84.0
Msa0630500 MtrunA17_Chr5g0423111 25.887 282 185 7 27 296 35 304 1.60e-16 79.0
Msa0630500 MtrunA17_Chr3g0135861 24.503 302 196 6 17 296 37 328 4.93e-16 77.4
Msa0630500 MtrunA17_Chr1g0201361 27.737 274 161 9 26 295 62 302 7.28e-16 76.6
Msa0630500 MtrunA17_Chr3g0126331 25.153 326 181 10 17 280 46 370 8.27e-16 77.0
Msa0630500 MtrunA17_Chr7g0219891 25.175 286 189 8 27 296 33 309 9.09e-16 76.3
Msa0630500 MtrunA17_Chr2g0328891 25.325 308 208 9 5 296 56 357 2.01e-15 75.9
Msa0630500 MtrunA17_Chr3g0131501 25.510 294 186 9 15 295 205 478 2.32e-15 76.3
Msa0630500 MtrunA17_Chr4g0051841 25.180 278 171 8 11 274 25 279 2.94e-15 75.1
Msa0630500 MtrunA17_Chr2g0293621 27.622 286 173 8 34 297 46 319 3.16e-15 75.1
Msa0630500 MtrunA17_Chr2g0331771 23.704 270 183 7 12 272 153 408 3.54e-15 75.5
Msa0630500 MtrunA17_Chr2g0331771 28.824 170 113 4 31 199 265 427 7.21e-12 65.5
Msa0630500 MtrunA17_Chr4g0046981 30.682 176 110 6 31 202 28 195 1.38e-14 72.8
Msa0630500 MtrunA17_Chr4g0004571 28.235 170 112 4 31 199 126 286 1.87e-14 72.4
Msa0630500 MtrunA17_Chr4g0004571 23.826 298 199 8 10 296 11 291 9.08e-14 70.5
Msa0630500 MtrunA17_Chr6g0455381 23.875 289 189 7 27 296 29 305 3.81e-14 71.6
Msa0630500 MtrunA17_Chr1g0200171 24.345 267 175 7 31 295 541 782 6.33e-14 72.4
Msa0630500 MtrunA17_Chr3g0086811 23.585 318 202 9 5 291 18 325 3.92e-13 68.9
Msa0630500 MtrunA17_Chr8g0352031 25.725 276 183 9 10 271 63 330 1.18e-12 67.8
Msa0630500 MtrunA17_Chr6g0461981 27.313 227 133 8 24 237 72 279 4.05e-12 65.9
Msa0630500 MtrunA17_Chr8g0385891 26.531 245 143 9 11 237 64 289 6.76e-12 65.5
Msa0630500 MtrunA17_Chr3g0088301 25.993 277 184 9 15 278 93 361 8.41e-12 65.1
Msa0630500 MtrunA17_Chr4g0040341 24.812 266 187 9 15 271 75 336 1.02e-11 65.1
Msa0630500 MtrunA17_Chr5g0407451 28.804 184 105 5 21 200 27 188 1.96e-11 63.5
Msa0630500 MtrunA17_Chr6g0488081 22.118 321 213 10 1 298 1 307 3.53e-11 63.2
Msa0630500 MtrunA17_Chr8g0393031 21.269 268 202 6 15 275 18 283 8.16e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0630500 AT3G54110.1 82.566 304 51 2 1 303 1 303 0.0 523
Msa0630500 AT5G58970.1 72.759 290 79 0 6 295 7 296 9.98e-166 462
Msa0630500 AT5G58970.1 27.083 192 126 4 17 207 122 300 9.36e-17 79.3
Msa0630500 AT5G58970.2 66.171 269 85 2 6 272 7 271 7.92e-128 365
Msa0630500 AT1G14140.1 37.063 286 170 4 18 297 19 300 9.70e-62 198
Msa0630500 AT1G14140.1 30.151 199 122 4 112 296 9 204 6.33e-17 80.1
Msa0630500 AT4G24570.1 38.188 309 165 4 14 298 5 311 1.06e-60 196
Msa0630500 AT2G22500.1 37.377 305 169 3 15 298 6 309 3.12e-59 192
Msa0630500 AT5G09470.1 39.331 239 141 3 66 301 99 336 1.89e-50 170
Msa0630500 AT5G09470.1 28.814 177 107 3 31 202 167 329 7.45e-15 74.3
Msa0630500 AT4G03115.1 34.256 289 167 5 15 297 38 309 1.16e-48 165
Msa0630500 AT4G03115.3 34.256 289 167 5 15 297 70 341 3.01e-48 164
Msa0630500 AT4G03115.6 34.146 246 145 4 58 297 12 246 5.11e-43 148
Msa0630500 AT4G03115.6 25.714 175 110 4 10 179 61 220 9.25e-11 61.6
Msa0630500 AT4G03115.5 34.034 238 140 4 66 297 12 238 4.13e-42 145
Msa0630500 AT4G03115.5 26.087 184 116 4 10 188 53 221 7.03e-11 61.6
Msa0630500 AT5G19760.1 31.613 310 188 4 1 300 1 296 1.36e-40 143
Msa0630500 AT4G03115.2 35.437 206 116 4 15 220 38 226 1.22e-30 115
Msa0630500 AT4G03115.4 35.610 205 115 4 15 219 38 225 2.28e-30 114
Msa0630500 AT5G01340.1 28.028 289 182 8 17 292 19 294 2.33e-27 108
Msa0630500 AT5G01340.1 32.275 189 117 5 18 201 113 295 2.19e-14 72.8
Msa0630500 AT5G48970.1 26.168 321 195 8 16 300 23 337 2.90e-26 106
Msa0630500 AT5G66380.1 30.132 302 182 11 16 298 10 301 1.99e-24 100
Msa0630500 AT5G66380.1 28.986 207 131 6 15 213 110 308 4.53e-15 74.7
Msa0630500 AT5G61810.2 30.070 286 171 8 17 295 67 330 4.68e-23 97.4
Msa0630500 AT3G21390.1 25.402 311 191 6 21 296 25 329 4.92e-23 97.4
Msa0630500 AT3G51870.1 25.735 272 187 6 26 296 102 359 5.34e-23 98.2
Msa0630500 AT3G21390.2 25.402 311 191 6 21 296 47 351 8.10e-23 97.1
Msa0630500 AT5G61810.1 30.935 278 163 8 25 295 218 473 2.39e-22 97.1
Msa0630500 AT5G01500.1 26.667 270 183 6 28 296 132 387 2.64e-22 96.7
Msa0630500 AT2G47490.1 29.577 284 171 10 27 296 31 299 3.63e-22 94.7
Msa0630500 AT5G46800.2 29.433 282 172 9 31 294 24 296 4.67e-22 94.4
Msa0630500 AT5G46800.2 27.041 196 127 2 117 296 6 201 1.36e-17 81.6
Msa0630500 AT5G46800.2 32.000 200 117 6 12 205 113 299 1.51e-16 79.0
Msa0630500 AT5G46800.3 29.433 282 172 9 31 294 24 296 4.67e-22 94.4
Msa0630500 AT5G46800.3 27.041 196 127 2 117 296 6 201 1.36e-17 81.6
Msa0630500 AT5G46800.3 32.000 200 117 6 12 205 113 299 1.51e-16 79.0
Msa0630500 AT5G46800.1 29.433 282 172 9 31 294 24 296 4.67e-22 94.4
Msa0630500 AT5G46800.1 27.041 196 127 2 117 296 6 201 1.36e-17 81.6
Msa0630500 AT5G46800.1 32.000 200 117 6 12 205 113 299 1.51e-16 79.0
Msa0630500 AT3G53940.1 26.280 293 195 6 21 300 79 363 8.89e-21 91.7
Msa0630500 AT5G07320.1 29.787 282 161 9 25 295 219 474 1.09e-20 92.4
Msa0630500 AT5G56450.1 27.586 290 171 11 31 296 50 324 3.12e-19 86.7
Msa0630500 AT5G56450.1 25.000 192 130 5 14 203 144 323 3.19e-11 63.5
Msa0630500 AT3G55640.1 24.606 317 216 8 1 303 24 331 4.59e-19 86.3
Msa0630500 AT3G55640.4 24.606 317 216 8 1 303 24 331 4.59e-19 86.3
Msa0630500 AT5G48970.2 25.000 272 168 7 59 300 1 266 2.32e-18 83.6
Msa0630500 AT4G01100.3 28.620 297 166 11 31 294 8 291 2.69e-18 84.0
Msa0630500 AT4G01100.3 27.670 206 128 5 15 205 95 294 1.28e-13 70.5
Msa0630500 AT4G01100.1 28.620 297 166 11 31 294 58 341 2.80e-18 84.3
Msa0630500 AT4G01100.1 27.670 206 128 5 15 205 145 344 1.89e-13 70.5
Msa0630500 AT4G01100.1 28.902 173 107 5 115 275 38 206 2.13e-12 67.4
Msa0630500 AT1G25380.1 26.370 292 180 11 27 300 35 309 3.45e-18 84.3
Msa0630500 AT1G25380.2 26.370 292 180 11 27 300 35 309 3.45e-18 84.3
Msa0630500 AT2G37890.1 27.273 297 187 11 21 300 51 335 4.04e-17 80.9
Msa0630500 AT4G01100.2 27.653 311 165 11 31 294 58 355 4.81e-17 80.9
Msa0630500 AT4G01100.2 28.218 202 124 5 19 205 163 358 1.27e-13 70.9
Msa0630500 AT4G27940.1 24.405 336 194 7 5 280 55 390 4.82e-17 81.3
Msa0630500 AT1G79900.1 25.461 271 175 7 31 295 32 281 2.70e-16 78.2
Msa0630500 AT5G15640.1 26.190 294 178 9 27 296 40 318 3.39e-15 75.1
Msa0630500 AT5G15640.2 26.190 294 178 9 27 296 33 311 3.41e-15 75.1
Msa0630500 AT2G26360.1 26.429 280 174 7 21 293 121 375 3.43e-15 75.9
Msa0630500 AT4G39460.2 25.170 294 165 10 15 295 58 309 1.22e-14 73.6
Msa0630500 AT4G39460.1 25.170 294 165 10 15 295 58 309 1.22e-14 73.6
Msa0630500 AT4G39460.3 25.170 294 165 10 15 295 58 309 1.22e-14 73.6
Msa0630500 AT1G07030.1 29.775 178 118 4 119 295 40 211 1.43e-14 73.6
Msa0630500 AT4G28390.1 24.382 283 201 7 5 278 73 351 2.95e-14 72.8
Msa0630500 AT4G28390.2 24.382 283 201 7 5 278 73 351 2.95e-14 72.8
Msa0630500 AT5G51050.1 27.148 291 182 10 15 295 223 493 8.43e-14 72.0
Msa0630500 AT5G13490.1 25.000 276 185 9 10 271 83 350 1.27e-13 71.2
Msa0630500 AT5G13490.2 25.000 276 185 9 10 271 83 350 1.27e-13 71.2
Msa0630500 AT1G34065.2 24.415 299 165 10 14 296 74 327 1.41e-13 70.5
Msa0630500 AT1G74240.1 25.606 289 177 9 15 275 36 314 1.52e-13 70.9
Msa0630500 AT1G34065.1 24.415 299 165 10 14 296 81 334 1.89e-13 70.5
Msa0630500 AT3G08580.2 25.725 276 183 9 10 271 79 346 5.33e-13 69.3
Msa0630500 AT3G08580.1 25.725 276 183 9 10 271 79 346 5.33e-13 69.3
Msa0630500 AT3G55640.2 26.316 209 138 6 1 202 24 223 6.23e-13 67.8
Msa0630500 AT3G55640.3 26.316 209 138 6 1 202 24 223 6.23e-13 67.8
Msa0630500 AT2G33820.4 27.419 248 155 8 2 231 1 241 6.80e-13 68.2
Msa0630500 AT3G53940.2 27.404 208 137 4 21 222 79 278 9.23e-13 67.8
Msa0630500 AT2G17270.1 26.966 267 154 8 21 274 28 266 9.32e-13 68.2
Msa0630500 AT2G33820.1 27.937 315 195 11 2 295 1 304 1.68e-12 67.4
Msa0630500 AT1G74240.2 26.007 273 164 9 31 275 4 266 1.79e-12 67.4
Msa0630500 AT4G32400.1 24.739 287 189 8 17 295 116 383 4.70e-12 66.6
Msa0630500 AT4G26180.2 22.105 285 190 8 11 276 17 288 9.41e-12 64.7
Msa0630500 AT4G26180.1 22.105 285 190 8 11 276 17 288 1.60e-11 64.7
Msa0630500 AT1G14560.3 27.230 213 139 7 9 209 17 225 2.45e-11 62.8
Msa0630500 AT1G14560.2 28.342 187 119 6 9 183 115 298 3.12e-11 63.5
Msa0630500 AT1G14560.1 27.230 213 139 7 9 209 115 323 4.56e-11 63.2
Msa0630500 AT5G17400.1 26.866 201 130 6 11 207 115 302 7.02e-11 62.4

Find 115 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAACATACATCATTCTTTA+AGG 0.120180 4_3:+12448935 None:intergenic
AAAGGATTCCTCCCAAATTT+TGG 0.150450 4_3:-12448390 Msa0630500:CDS
TGTATAATGTATTTCGAAAT+TGG 0.164416 4_3:+12452289 None:intergenic
GATCCTAGCCGTCCAAAATT+TGG 0.180743 4_3:+12448378 None:intergenic
AGAACGTTCGTAGTTAAATT+TGG 0.183661 4_3:+12447892 None:intergenic
ACTCATCTCTTTGCTGGCCT+TGG 0.214926 4_3:-12449428 Msa0630500:CDS
CTCTTTGCTGGCCTTGGGGC+AGG 0.217922 4_3:-12449422 Msa0630500:CDS
GCGTTTGAGAAATGAGAATT+TGG 0.226877 4_3:+12452235 None:intergenic
CCCAACATACCCTTGTATTT+AGG 0.228978 4_3:+12450382 None:intergenic
AATTTAACTACGAACGTTCT+TGG 0.238865 4_3:-12447889 Msa0630500:three_prime_UTR
ATGGTCAACTATTATTGTTT+TGG 0.279172 4_3:+12452313 None:intergenic
CTCATCTCTTTGCTGGCCTT+GGG 0.285161 4_3:-12449427 Msa0630500:CDS
ATGATTAAATGTATTTATAA+TGG 0.285266 4_3:+12447807 None:intergenic
ATTCGTATTGTACCTGTTCT+AGG 0.285927 4_3:+12448331 None:intergenic
ACCAAAGGAGAGGTTGGATT+TGG 0.317483 4_3:+12452153 None:intergenic
AACAGGTGCTGTGGCAATTA+TGG 0.322321 4_3:-12449903 Msa0630500:intron
CATGAGCTCAATCAATTTCA+TGG 0.323792 4_3:-12448118 Msa0630500:exon
CTCTGGAAGGGCATTGTGCC+AGG 0.340136 4_3:-12450319 Msa0630500:CDS
GTTGTAACTCATCTCTTTGC+TGG 0.342438 4_3:-12449434 Msa0630500:CDS
TCATGACGACTGTAAACTTT+TGG 0.356748 4_3:+12448136 None:intergenic
AGGAAGGAGTTCGAGCTCTA+TGG 0.375783 4_3:-12449675 Msa0630500:CDS
GAACGGTTGGAACGATTGCC+AGG 0.382895 4_3:-12450360 Msa0630500:CDS
ATCCTAGCCGTCCAAAATTT+GGG 0.385337 4_3:+12448379 None:intergenic
ATAGGTTTGTACCATACCTT+TGG 0.387579 4_3:-12450467 Msa0630500:intron
TCCAAATCCAACCTCTCCTT+TGG 0.400574 4_3:-12452154 Msa0630500:CDS
CCTAAATACAAGGGTATGTT+GGG 0.402453 4_3:-12450382 Msa0630500:CDS
CTTCTGCATCATTGTTGCCA+TGG 0.407471 4_3:-12452185 Msa0630500:exon
TAGCTATGATCAAGTGAAAC+AGG 0.413324 4_3:-12449596 Msa0630500:intron
AATGTTTGTATGGAGGATTA+AGG 0.415177 4_3:-12450285 Msa0630500:CDS
TGTATGGAGGATTAAGGATT+GGG 0.415795 4_3:-12450279 Msa0630500:CDS
TCTTTGCTGGCCTTGGGGCA+GGG 0.418333 4_3:-12449421 Msa0630500:CDS
TGTATTTATAATGGATGCAT+TGG 0.423755 4_3:+12447816 None:intergenic
TGGTGTTTCTCAGGGACCTT+TGG 0.427434 4_3:-12448421 Msa0630500:intron
ACCTAAATACAAGGGTATGT+TGG 0.436713 4_3:-12450383 Msa0630500:CDS
ATTCTAGCTGCATTTACAAC+AGG 0.436797 4_3:-12450091 Msa0630500:intron
CGTTTGAGAAATGAGAATTT+GGG 0.442411 4_3:+12452236 None:intergenic
ATACCATTTCTCGCTATGTT+GGG 0.443289 4_3:+12449640 None:intergenic
TTTAATCATGAGACCTTGAT+CGG 0.451823 4_3:-12447793 Msa0630500:three_prime_UTR
GGAGTTCGAGCTCTATGGAC+AGG 0.453750 4_3:-12449670 Msa0630500:CDS
CTTCAAAAGCAAGCTGTAGC+TGG 0.458080 4_3:-12450421 Msa0630500:CDS
TTGAAGCTGAAGCCTGACTT+TGG 0.458651 4_3:+12450438 None:intergenic
GGTGTTCCCAGGCGCTACTC+TGG 0.458697 4_3:-12449821 Msa0630500:CDS
TATGTTTCTAACCCTAGAAC+AGG 0.463935 4_3:-12448343 Msa0630500:intron
ACCCTTGTATTTAGGTAAAG+AGG 0.466223 4_3:+12450390 None:intergenic
CGAGCTCTATGGACAGGGCT+TGG 0.466721 4_3:-12449664 Msa0630500:CDS
CTTTGGACACCGCCAAAGTC+AGG 0.467903 4_3:-12450450 Msa0630500:CDS
AATACCATTTCTCGCTATGT+TGG 0.472885 4_3:+12449639 None:intergenic
CTGCATCGTCAATGTTTGTA+TGG 0.475127 4_3:-12450295 Msa0630500:CDS
CCTAGTTGGTAAAATGAAGA+AGG 0.475185 4_3:+12448048 None:intergenic
TTATTCGTCAATTGTGAGAC+AGG 0.478730 4_3:-12449786 Msa0630500:intron
GGATTTGGAATCTGCAACCA+TGG 0.482153 4_3:+12452168 None:intergenic
AACAAAATTGAACCCGATCA+AGG 0.484003 4_3:+12447780 None:intergenic
TTCGTATTGTACCTGTTCTA+GGG 0.485604 4_3:+12448332 None:intergenic
TTGTATGGAGGATTAAGGAT+TGG 0.485749 4_3:-12450280 Msa0630500:CDS
GGAACGATTGCCAGGGAAGA+AGG 0.491235 4_3:-12450352 Msa0630500:CDS
GGTCCCAACATAGCGAGAAA+TGG 0.500921 4_3:-12449643 Msa0630500:CDS
GCAGGTCAAGTCGAGAATGA+TGG 0.502235 4_3:-12449000 Msa0630500:intron
ATTTGGAGAGAATTATTACA+TGG 0.505186 4_3:+12447909 None:intergenic
CTTACTTTGACAAGATCAGT+TGG 0.507478 4_3:+12449872 None:intergenic
AAGAAGGTCTTTCAGCACTC+TGG 0.510738 4_3:-12450336 Msa0630500:CDS
TGTAAGTTGGTTGCATTAGA+CGG 0.511340 4_3:-12452362 None:intergenic
GGTTGGACCAAAGGAGAGGT+TGG 0.513532 4_3:+12452147 None:intergenic
TCTGGAAGGGCATTGTGCCA+GGG 0.519541 4_3:-12450318 Msa0630500:CDS
AATTACCTCCTGGTGTTCCC+AGG 0.520062 4_3:-12449832 Msa0630500:CDS
AAACATTGACGATGCAGCCC+TGG 0.522655 4_3:+12450301 None:intergenic
GAGTAGCGCCTGGGAACACC+AGG 0.525220 4_3:+12449824 None:intergenic
TGCTGAAAGACCTTCTTCCC+TGG 0.527885 4_3:+12450342 None:intergenic
ATGTTTGACTACATCCTAGT+TGG 0.529100 4_3:+12448034 None:intergenic
AAAGCACTGCTGGCGAAGGT+TGG 0.533572 4_3:+12452130 None:intergenic
CAGGTCAAGTCGAGAATGAT+GGG 0.539474 4_3:-12448999 Msa0630500:CDS
AAGGGTATGTTGGGAACGGT+TGG 0.543641 4_3:-12450373 Msa0630500:CDS
ACATGCGGAGAAAGCACTGC+TGG 0.548559 4_3:+12452120 None:intergenic
TCATCTCTTTGCTGGCCTTG+GGG 0.549269 4_3:-12449426 Msa0630500:CDS
GCTCAATCAATTTCATGGAG+TGG 0.550017 4_3:-12448113 Msa0630500:three_prime_UTR
AAGCTGAAGCCTGACTTTGG+CGG 0.551365 4_3:+12450441 None:intergenic
TTCATGGAGTGGTTTCTATG+TGG 0.552704 4_3:-12448102 Msa0630500:three_prime_UTR
AGGTCTTTCAGCACTCTGGA+AGG 0.552750 4_3:-12450332 Msa0630500:CDS
AATGTATTTCGAAATTGGAA+TGG 0.553059 4_3:+12452294 None:intergenic
GGTCTTTCAGCACTCTGGAA+GGG 0.557130 4_3:-12450331 Msa0630500:CDS
CAAAGATCCAGAGTAGCGCC+TGG 0.558547 4_3:+12449814 None:intergenic
TTAATCATGAGACCTTGATC+GGG 0.559270 4_3:-12447792 Msa0630500:three_prime_UTR
TTTGGCGGTGTCCAAAGGTA+TGG 0.563038 4_3:+12450456 None:intergenic
CAACAATGATGCAGAAGAAG+AGG 0.568198 4_3:+12452191 None:intergenic
GCTGGCGAAGGTTGGACCAA+AGG 0.569166 4_3:+12452138 None:intergenic
ATCCTCTTTACCTAAATACA+AGG 0.571318 4_3:-12450392 Msa0630500:CDS
GCAGAAGGAAAATTACCTCC+TGG 0.576611 4_3:-12449842 Msa0630500:CDS
CTAGTTGGTAAAATGAAGAA+GGG 0.576985 4_3:+12448049 None:intergenic
AAAGTAAGACTTCAAGCAGA+AGG 0.578224 4_3:-12449857 Msa0630500:CDS
CTGACTTTGGCGGTGTCCAA+AGG 0.581658 4_3:+12450451 None:intergenic
TGTTACATCAACAGGTGCTG+TGG 0.584258 4_3:-12449912 Msa0630500:intron
TAAGACTTTCTACACGGGGA+AGG 0.585668 4_3:-12450146 Msa0630500:CDS
TATCGGCTCCCCAGTTGATG+TGG 0.593443 4_3:-12449384 Msa0630500:intron
GGAGAAAGCACTGCTGGCGA+AGG 0.597374 4_3:+12452126 None:intergenic
CATCGTCAATGTTTGTATGG+AGG 0.599547 4_3:-12450292 Msa0630500:CDS
CAGGTTAAGACTTTCTACAC+GGG 0.605066 4_3:-12450151 Msa0630500:CDS
AATGATGCAGAAGAAGAGGA+AGG 0.622071 4_3:+12452195 None:intergenic
ATACAAGGGTATGTTGGGAA+CGG 0.626891 4_3:-12450377 Msa0630500:CDS
AAAGATCCAGAGTAGCGCCT+GGG 0.631215 4_3:+12449815 None:intergenic
GAGTTCGAGCTCTATGGACA+GGG 0.636887 4_3:-12449669 Msa0630500:CDS
ACAGTGGAACATCGCCCACA+TGG 0.638880 4_3:+12450122 None:intergenic
AATCCTTTATAAAACGCCAA+AGG 0.640143 4_3:+12448405 None:intergenic
AACGGTTGGAACGATTGCCA+GGG 0.640772 4_3:-12450359 Msa0630500:CDS
AAGAAGAGGAAGGAATCGAA+AGG 0.645871 4_3:+12452205 None:intergenic
CGAAGGTTGGACCAAAGGAG+AGG 0.649225 4_3:+12452143 None:intergenic
TTTCTCCGCATGTTTCGCTG+AGG 0.650743 4_3:-12452110 Msa0630500:intron
ACAGGTTAAGACTTTCTACA+CGG 0.651442 4_3:-12450152 Msa0630500:intron
TCCTCTTTACCTAAATACAA+GGG 0.668803 4_3:-12450391 Msa0630500:CDS
ACAACATTGTCAGTGAACCC+CGG 0.669074 4_3:+12449452 None:intergenic
TAGCGCCTGGGAACACCAGG+AGG 0.682089 4_3:+12449827 None:intergenic
CTACACGGGGAAGGACCATG+TGG 0.686360 4_3:-12450137 Msa0630500:CDS
AGGTGCTGTGGCAATTATGG+TGG 0.697754 4_3:-12449900 Msa0630500:CDS
CATTACCTCAGCGAAACATG+CGG 0.697882 4_3:+12452105 None:intergenic
CTAGCCGTCCAAAATTTGGG+AGG 0.698037 4_3:+12448382 None:intergenic
TACACGGGGAAGGACCATGT+GGG 0.703680 4_3:-12450136 Msa0630500:CDS
AGGTTAAGACTTTCTACACG+GGG 0.711418 4_3:-12450150 Msa0630500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAAATAAAATAAA+AGG + chr4_3:12451617-12451636 None:intergenic 0.0%
!!! TTATTTTATTTTATTTTTTT+CGG - chr4_3:12451618-12451637 Msa0630500:intron 0.0%
!!! TATTTTTTTTTACCAAAAAT+TGG + chr4_3:12448494-12448513 None:intergenic 10.0%
!!! TAAAAAAGTTCAAATTTTAT+AGG - chr4_3:12448698-12448717 Msa0630500:intron 10.0%
!!! AAAAAAGTTCAAATTTTATA+GGG - chr4_3:12448699-12448718 Msa0630500:intron 10.0%
!! ATGATTAAATGTATTTATAA+TGG + chr4_3:12452311-12452330 None:intergenic 10.0%
!! TAAAGCAATGTAAATAATAA+TGG + chr4_3:12448071-12448090 None:intergenic 15.0%
!!! TTTGTAGTTTTTTTTCTTAT+GGG + chr4_3:12448425-12448444 None:intergenic 15.0%
!!! TTTTGTAGTTTTTTTTCTTA+TGG + chr4_3:12448426-12448445 None:intergenic 15.0%
!!! GAACTTTTTTATTTTGTTTT+TGG + chr4_3:12448689-12448708 None:intergenic 15.0%
!! AAAAAACACTAAAAACAAAA+GGG + chr4_3:12448740-12448759 None:intergenic 15.0%
!!! ATTTATTACTGATTACTTTT+TGG - chr4_3:12449523-12449542 Msa0630500:intron 15.0%
!!! TTTATTACTGATTACTTTTT+GGG - chr4_3:12449524-12449543 Msa0630500:intron 15.0%
!!! TTGAATCTATTTTAATATGT+TGG - chr4_3:12450108-12450127 Msa0630500:CDS 15.0%
!!! TGAATCTATTTTAATATGTT+GGG - chr4_3:12450109-12450128 Msa0630500:CDS 15.0%
!!! ACAAGATACAATTTTTTTTA+AGG + chr4_3:12451553-12451572 None:intergenic 15.0%
!! TAAAAAAAATTGTATCTTGT+TGG - chr4_3:12451553-12451572 Msa0630500:intron 15.0%
!!! TTTATTTTATTTTTTTCGGT+TGG - chr4_3:12451622-12451641 Msa0630500:intron 15.0%
!! TGTATAATGTATTTCGAAAT+TGG + chr4_3:12447829-12447848 None:intergenic 20.0%
!!! TTATTTACATTGCTTTATTG+TGG - chr4_3:12448074-12448093 Msa0630500:three_prime_UTR 20.0%
!! ATCATGTTTGTTTATTCAAA+AGG - chr4_3:12448220-12448239 Msa0630500:intron 20.0%
!! TCATGTTTGTTTATTCAAAA+GGG - chr4_3:12448221-12448240 Msa0630500:intron 20.0%
!!! TTGTAGTTTTTTTTTCTTAG+AGG - chr4_3:12448614-12448633 Msa0630500:intron 20.0%
!!! TGTAGTTTTTTTTTCTTAGA+GGG - chr4_3:12448615-12448634 Msa0630500:intron 20.0%
!! GAAAAAACACTAAAAACAAA+AGG + chr4_3:12448741-12448760 None:intergenic 20.0%
!! TAATTACAACTATAAACCAA+AGG + chr4_3:12448844-12448863 None:intergenic 20.0%
!! TTATAGTTGTAATTAGTCAA+TGG - chr4_3:12448849-12448868 Msa0630500:intron 20.0%
!!! GTTTGTTGTTTCAAATATTT+AGG - chr4_3:12448948-12448967 Msa0630500:CDS 20.0%
!! AGTTTAAAAATAGATTGGAA+AGG + chr4_3:12449219-12449238 None:intergenic 20.0%
!!! AAAGAGTATTCAATTTTATC+AGG + chr4_3:12449379-12449398 None:intergenic 20.0%
!! AACAAAATTCGACATATTTA+AGG + chr4_3:12449462-12449481 None:intergenic 20.0%
!!! TTACTGTTTCATTTTCATAT+TGG - chr4_3:12451008-12451027 Msa0630500:intron 20.0%
!!! TACTGTTTCATTTTCATATT+GGG - chr4_3:12451009-12451028 Msa0630500:intron 20.0%
!! TAAACATACATCATTCTTTA+AGG + chr4_3:12451183-12451202 None:intergenic 20.0%
!! TTAACCTTAATCATCATATT+TGG - chr4_3:12451274-12451293 Msa0630500:intron 20.0%
!! AAAACCAAATATGATGATTA+AGG + chr4_3:12451281-12451300 None:intergenic 20.0%
!! TTGACATATCTAATTGTATT+TGG - chr4_3:12451356-12451375 Msa0630500:intron 20.0%
!!! TTTTTAAAGGCAAATATTAG+TGG + chr4_3:12451497-12451516 None:intergenic 20.0%
!!! GTTAAAGGAAAGTTTTTTAA+AGG + chr4_3:12451510-12451529 None:intergenic 20.0%
!!! TTTTTTAAGGCAAATATTAG+TGG + chr4_3:12451540-12451559 None:intergenic 20.0%
!!! ATTTTGTTTTTCAAAAGCAA+TGG - chr4_3:12452350-12452369 Msa0630500:five_prime_UTR 20.0%
!! ATGGTCAACTATTATTGTTT+TGG + chr4_3:12447805-12447824 None:intergenic 25.0%
! AATGTATTTCGAAATTGGAA+TGG + chr4_3:12447824-12447843 None:intergenic 25.0%
! CTTATATCTAACAAACACTA+GGG + chr4_3:12448275-12448294 None:intergenic 25.0%
!! CTAGTGTTTGTTAGATATAA+GGG - chr4_3:12448274-12448293 Msa0630500:intron 25.0%
!!! CTTGTGAATTAAGCTTTATT+TGG - chr4_3:12448770-12448789 Msa0630500:intron 25.0%
! TAAACCAAAGGTAAAAATAG+TGG + chr4_3:12448832-12448851 None:intergenic 25.0%
!! AAGGATTGTACTTTTCAATT+CGG - chr4_3:12448922-12448941 Msa0630500:intron 25.0%
!!! TGTTGTTTCAAATATTTAGG+TGG - chr4_3:12448951-12448970 Msa0630500:CDS 25.0%
!! TTCAAATATTTAGGTGGATT+AGG - chr4_3:12448957-12448976 Msa0630500:CDS 25.0%
! ACATGTTGGAATTAAATTGT+TGG - chr4_3:12449014-12449033 Msa0630500:intron 25.0%
! TCAGGAGTTTAAAAATAGAT+TGG + chr4_3:12449224-12449243 None:intergenic 25.0%
!!! TATTTTTAAACTCCTGAAGA+AGG - chr4_3:12449227-12449246 Msa0630500:intron 25.0%
! TTTAGATGATAGGAAATGAA+GGG + chr4_3:12449288-12449307 None:intergenic 25.0%
! ATTTAGATGATAGGAAATGA+AGG + chr4_3:12449289-12449308 None:intergenic 25.0%
!!! ACATGCAGATATAGTTTTAT+TGG - chr4_3:12449326-12449345 Msa0630500:intron 25.0%
!!! TTTTATTGGTTGAACTTTGT+TGG - chr4_3:12449340-12449359 Msa0630500:intron 25.0%
! TTATTTATCTGTGAATAGCA+TGG - chr4_3:12449934-12449953 Msa0630500:intron 25.0%
! AGAAAACACAAATACATGTT+AGG + chr4_3:12450149-12450168 None:intergenic 25.0%
! TCTCTTTCATAAATCATGTT+AGG + chr4_3:12450368-12450387 None:intergenic 25.0%
! CAGGTAATTTATAGTATTAC+TGG - chr4_3:12450538-12450557 Msa0630500:intron 25.0%
! TAAAAATTACCACATCAACT+GGG + chr4_3:12450743-12450762 None:intergenic 25.0%
! TTAAAAATTACCACATCAAC+TGG + chr4_3:12450744-12450763 None:intergenic 25.0%
! GAACAGAATTATTAGTAGAA+AGG + chr4_3:12451074-12451093 None:intergenic 25.0%
! AGAACATCAATCATCATATT+TGG - chr4_3:12451231-12451250 Msa0630500:intron 25.0%
!!! TCAATCATCATATTTGGTTT+TGG - chr4_3:12451237-12451256 Msa0630500:intron 25.0%
! TTTATGCATCTTAACAGAAA+AGG + chr4_3:12451330-12451349 None:intergenic 25.0%
!!! TGAAAGATGTTTTAAGAATG+AGG - chr4_3:12451417-12451436 Msa0630500:intron 25.0%
!!! GTTTCTCTTCTTTGTTATTT+CGG - chr4_3:12451817-12451836 Msa0630500:intron 25.0%
!!! AATGCATTTTTTGGAGTATA+TGG + chr4_3:12451861-12451880 None:intergenic 25.0%
!! ATACTCCAAAAAATGCATTT+TGG - chr4_3:12451862-12451881 Msa0630500:intron 25.0%
!! TACTCCAAAAAATGCATTTT+GGG - chr4_3:12451863-12451882 Msa0630500:intron 25.0%
!!! TAGTCAAACATTTTTTTCAG+AGG - chr4_3:12452093-12452112 Msa0630500:intron 25.0%
! ATTTGGAGAGAATTATTACA+TGG + chr4_3:12452209-12452228 None:intergenic 25.0%
!!! GATTCTTTTCAAATTTGTTG+TGG - chr4_3:12452263-12452282 Msa0630500:five_prime_UTR 25.0%
!!! TGTATTTATAATGGATGCAT+TGG + chr4_3:12452302-12452321 None:intergenic 25.0%
! AATTTTCTTATGCAGCGATT+AGG + chr4_3:12447781-12447800 None:intergenic 30.0%
CGTTTGAGAAATGAGAATTT+GGG + chr4_3:12447882-12447901 None:intergenic 30.0%
!! TTGCTTTATTGTGGTTTTCA+TGG - chr4_3:12448083-12448102 Msa0630500:three_prime_UTR 30.0%
! TGATCAAGTGAACAATTTTG+TGG - chr4_3:12448186-12448205 Msa0630500:intron 30.0%
! AAAAGGGTTAACCTCAATTT+TGG - chr4_3:12448237-12448256 Msa0630500:intron 30.0%
! AAAGGGTTAACCTCAATTTT+GGG - chr4_3:12448238-12448257 Msa0630500:intron 30.0%
GTGTTAAATTCCCAAAATTG+AGG + chr4_3:12448251-12448270 None:intergenic 30.0%
CCTTATATCTAACAAACACT+AGG + chr4_3:12448276-12448295 None:intergenic 30.0%
! CCTAGTGTTTGTTAGATATA+AGG - chr4_3:12448273-12448292 Msa0630500:intron 30.0%
GATTTGTAGTAGTGACTAAA+AGG - chr4_3:12448327-12448346 Msa0630500:intron 30.0%
!!! TTTTACCAAAAATTGGCCTT+GGG + chr4_3:12448487-12448506 None:intergenic 30.0%
!! TTTTTACCAAAAATTGGCCT+TGG + chr4_3:12448488-12448507 None:intergenic 30.0%
!!! TACTCCACTATTTTTACCTT+TGG - chr4_3:12448825-12448844 Msa0630500:intron 30.0%
TAGTTGTAATTAGTCAATGG+TGG - chr4_3:12448852-12448871 Msa0630500:intron 30.0%
! AGGATTGTACTTTTCAATTC+GGG - chr4_3:12448923-12448942 Msa0630500:intron 30.0%
! ATGGATTGTAATGATCTGTA+TGG - chr4_3:12449051-12449070 Msa0630500:intron 30.0%
ATTGTAATGATCTGTATGGA+TGG - chr4_3:12449055-12449074 Msa0630500:intron 30.0%
!!! GATGGTATAGGATGTTTTTT+TGG - chr4_3:12449073-12449092 Msa0630500:intron 30.0%
!!! TAGGATGTTTTTTTGGTGAA+TGG - chr4_3:12449080-12449099 Msa0630500:intron 30.0%
! CTTTGATAATCTTCCGAATA+GGG + chr4_3:12449137-12449156 None:intergenic 30.0%
CTATTCGGAAGATTATCAAA+GGG - chr4_3:12449136-12449155 Msa0630500:intron 30.0%
AGATTATCAAAGGGACAAAA+TGG - chr4_3:12449145-12449164 Msa0630500:intron 30.0%
TTAGATGATAGGAAATGAAG+GGG + chr4_3:12449287-12449306 None:intergenic 30.0%
ATCCTCTTTACCTAAATACA+AGG - chr4_3:12449723-12449742 Msa0630500:intron 30.0%
TCCTCTTTACCTAAATACAA+GGG - chr4_3:12449724-12449743 Msa0630500:intron 30.0%
AATGTTTGTATGGAGGATTA+AGG - chr4_3:12449830-12449849 Msa0630500:CDS 30.0%
GTAACAAATTGAAGAGTTGT+AGG + chr4_3:12450189-12450208 None:intergenic 30.0%
!! CTTCAATTTGTTACATCAAC+AGG - chr4_3:12450195-12450214 Msa0630500:intron 30.0%
AAAATCTGCATTTAACACTC+AGG - chr4_3:12450420-12450439 Msa0630500:CDS 30.0%
! AGTATTCGTTTTGTAGACAA+TGG - chr4_3:12450588-12450607 Msa0630500:intron 30.0%
!! GCAGACTATTTTGAAAATTC+CGG - chr4_3:12450644-12450663 Msa0630500:intron 30.0%
!! CAGACTATTTTGAAAATTCC+GGG - chr4_3:12450645-12450664 Msa0630500:intron 30.0%
!! AGACTATTTTGAAAATTCCG+GGG - chr4_3:12450646-12450665 Msa0630500:intron 30.0%
AAAAATTACCACATCAACTG+GGG + chr4_3:12450742-12450761 None:intergenic 30.0%
! CTACATAGACATTATTGACT+TGG - chr4_3:12450771-12450790 Msa0630500:intron 30.0%
ATCTAATCATGGTTCGATTA+GGG + chr4_3:12450856-12450875 None:intergenic 30.0%
TATCTAATCATGGTTCGATT+AGG + chr4_3:12450857-12450876 None:intergenic 30.0%
TACCATTGTGTAATCATTCT+GGG + chr4_3:12450885-12450904 None:intergenic 30.0%
! ATTCTGTTCTATCTTCCTTT+TGG - chr4_3:12451085-12451104 Msa0630500:intron 30.0%
ATGATTGATGTTCTTAACAG+AGG + chr4_3:12451225-12451244 None:intergenic 30.0%
ATTAGTGGTAAGTCTGTTAA+AGG + chr4_3:12451482-12451501 None:intergenic 30.0%
!! ATTAGTGGTTAGTCTGTTAA+AGG + chr4_3:12451525-12451544 None:intergenic 30.0%
GTATAATACACAATCTTAGC+AGG - chr4_3:12451575-12451594 Msa0630500:intron 30.0%
TGTCCTTTATCATTACTGAT+TGG - chr4_3:12451661-12451680 Msa0630500:intron 30.0%
AATCCTTTATAAAACGCCAA+AGG + chr4_3:12451713-12451732 None:intergenic 30.0%
!! CTAGTTGGTAAAATGAAGAA+GGG + chr4_3:12452069-12452088 None:intergenic 30.0%
AGAACGTTCGTAGTTAAATT+TGG + chr4_3:12452226-12452245 None:intergenic 30.0%
AATTTAACTACGAACGTTCT+TGG - chr4_3:12452226-12452245 Msa0630500:five_prime_UTR 30.0%
TTTAATCATGAGACCTTGAT+CGG - chr4_3:12452322-12452341 Msa0630500:five_prime_UTR 30.0%
GCGTTTGAGAAATGAGAATT+TGG + chr4_3:12447883-12447902 None:intergenic 35.0%
GTTATTATCCTGTGTAGTGT+AGG - chr4_3:12448032-12448051 Msa0630500:three_prime_UTR 35.0%
GCTTGTTCTAATTTCTTCTG+TGG - chr4_3:12448140-12448159 Msa0630500:CDS 35.0%
TGTTAGATATAAGGGATGTG+AGG - chr4_3:12448282-12448301 Msa0630500:intron 35.0%
GTTAGATATAAGGGATGTGA+GGG - chr4_3:12448283-12448302 Msa0630500:intron 35.0%
TGCTACAGTTGCAAAACTTA+GGG + chr4_3:12448454-12448473 None:intergenic 35.0%
!! TTTACCAAAAATTGGCCTTG+GGG + chr4_3:12448486-12448505 None:intergenic 35.0%
! AAATAGTGGAGTAATGTGTC+TGG + chr4_3:12448818-12448837 None:intergenic 35.0%
! GTCTGGTTTGATGAAATGAA+AGG - chr4_3:12448903-12448922 Msa0630500:intron 35.0%
! GTTTTCTTTTCCATCCTTGT+TGG - chr4_3:12448981-12449000 Msa0630500:CDS 35.0%
ATGTGCAATACAAACCAACA+AGG + chr4_3:12448998-12449017 None:intergenic 35.0%
!! TTGGTTTGTATTGCACATGT+TGG - chr4_3:12449000-12449019 Msa0630500:intron 35.0%
GTTGGACAAAATGTTTGACA+TGG - chr4_3:12449032-12449051 Msa0630500:intron 35.0%
ATGATCTGTATGGATGGTAT+AGG - chr4_3:12449061-12449080 Msa0630500:intron 35.0%
!!! GATGTTTTTTTGGTGAATGG+AGG - chr4_3:12449083-12449102 Msa0630500:intron 35.0%
TAGTTATCGTTCACCCTATT+CGG - chr4_3:12449121-12449140 Msa0630500:intron 35.0%
! CCTTTGATAATCTTCCGAAT+AGG + chr4_3:12449138-12449157 None:intergenic 35.0%
CCTATTCGGAAGATTATCAA+AGG - chr4_3:12449135-12449154 Msa0630500:intron 35.0%
TAAAGGGAATGAATGGAAAG+GGG + chr4_3:12449260-12449279 None:intergenic 35.0%
GTAAAGGGAATGAATGGAAA+GGG + chr4_3:12449261-12449280 None:intergenic 35.0%
TGTAAAGGGAATGAATGGAA+AGG + chr4_3:12449262-12449281 None:intergenic 35.0%
GAAATGAAGGGGAATGTAAA+GGG + chr4_3:12449276-12449295 None:intergenic 35.0%
GCATGCTGTATTTAGATGAT+AGG + chr4_3:12449298-12449317 None:intergenic 35.0%
! TGAAAACAGCTTTTGCATTG+TGG - chr4_3:12449413-12449432 Msa0630500:CDS 35.0%
GACGTTCTTGTGATTGATAT+AGG - chr4_3:12449630-12449649 Msa0630500:CDS 35.0%
ATAGGTTTGTACCATACCTT+TGG - chr4_3:12449648-12449667 Msa0630500:CDS 35.0%
ACCCTTGTATTTAGGTAAAG+AGG + chr4_3:12449728-12449747 None:intergenic 35.0%
! ACCTAAATACAAGGGTATGT+TGG - chr4_3:12449732-12449751 Msa0630500:intron 35.0%
! CCTAAATACAAGGGTATGTT+GGG - chr4_3:12449733-12449752 Msa0630500:intron 35.0%
TTGTATGGAGGATTAAGGAT+TGG - chr4_3:12449835-12449854 Msa0630500:CDS 35.0%
TGTATGGAGGATTAAGGATT+GGG - chr4_3:12449836-12449855 Msa0630500:CDS 35.0%
AACAAAGATTCGAATCTCAC+AGG + chr4_3:12449871-12449890 None:intergenic 35.0%
TGAATAGCATGGTGATTAAC+AGG - chr4_3:12449945-12449964 Msa0630500:intron 35.0%
ACAGGTTAAGACTTTCTACA+CGG - chr4_3:12449963-12449982 Msa0630500:intron 35.0%
! GCTAGAATTTTCTTTGACAG+TGG + chr4_3:12450012-12450031 None:intergenic 35.0%
! ATTCTAGCTGCATTTACAAC+AGG - chr4_3:12450024-12450043 Msa0630500:intron 35.0%
! TCAATTCTGGAAGTTGTTGT+GGG - chr4_3:12450053-12450072 Msa0630500:intron 35.0%
TAGATTCAAATCAGAGCACA+CGG + chr4_3:12450097-12450116 None:intergenic 35.0%
CTTACTTTGACAAGATCAGT+TGG + chr4_3:12450246-12450265 None:intergenic 35.0%
AAAGTAAGACTTCAAGCAGA+AGG - chr4_3:12450258-12450277 Msa0630500:intron 35.0%
TTATTCGTCAATTGTGAGAC+AGG - chr4_3:12450329-12450348 Msa0630500:CDS 35.0%
ATACCATTTCTCGCTATGTT+GGG + chr4_3:12450478-12450497 None:intergenic 35.0%
AATACCATTTCTCGCTATGT+TGG + chr4_3:12450479-12450498 None:intergenic 35.0%
TAGCTATGATCAAGTGAAAC+AGG - chr4_3:12450519-12450538 Msa0630500:intron 35.0%
TCTAATCATGGTTCGATTAG+GGG + chr4_3:12450855-12450874 None:intergenic 35.0%
CTGGGATTCTTATCTAATCA+TGG + chr4_3:12450867-12450886 None:intergenic 35.0%
ATCCCAGAATGATTACACAA+TGG - chr4_3:12450880-12450899 Msa0630500:intron 35.0%
CTACCATTGTGTAATCATTC+TGG + chr4_3:12450886-12450905 None:intergenic 35.0%
GATCTCTTTATGGTCCATTA+AGG - chr4_3:12450962-12450981 Msa0630500:intron 35.0%
TCTTTATGGTCCATTAAGGT+GGG - chr4_3:12450966-12450985 Msa0630500:intron 35.0%
TATATACATCCCCACCTTAA+TGG + chr4_3:12450979-12450998 None:intergenic 35.0%
!! GGTTTTGACAAAGCAATCAA+GGG + chr4_3:12451162-12451181 None:intergenic 35.0%
!! AGGTTTTGACAAAGCAATCA+AGG + chr4_3:12451163-12451182 None:intergenic 35.0%
ACAGAGGAAAATAGTAACAG+AGG + chr4_3:12451209-12451228 None:intergenic 35.0%
!!! ATGTTTTAAGAATGAGGTCC+AGG - chr4_3:12451423-12451442 Msa0630500:intron 35.0%
!!! TGTTTTAAGAATGAGGTCCA+GGG - chr4_3:12451424-12451443 Msa0630500:intron 35.0%
GGTAAGTCTGTTAAAGGAAA+GGG + chr4_3:12451476-12451495 None:intergenic 35.0%
TGGTAAGTCTGTTAAAGGAA+AGG + chr4_3:12451477-12451496 None:intergenic 35.0%
CAGCCAATCAGTAATGATAA+AGG + chr4_3:12451667-12451686 None:intergenic 35.0%
! TACTGATTGGCTGTGTAATT+TGG - chr4_3:12451674-12451693 Msa0630500:intron 35.0%
!! TGTGTAATTTGGTGTTTCTC+AGG - chr4_3:12451685-12451704 Msa0630500:intron 35.0%
!! GTGTAATTTGGTGTTTCTCA+GGG - chr4_3:12451686-12451705 Msa0630500:intron 35.0%
! AAAGGATTCCTCCCAAATTT+TGG - chr4_3:12451725-12451744 Msa0630500:intron 35.0%
! TATGTTTCTAACCCTAGAAC+AGG - chr4_3:12451772-12451791 Msa0630500:intron 35.0%
TTCGTATTGTACCTGTTCTA+GGG + chr4_3:12451786-12451805 None:intergenic 35.0%
ATTCGTATTGTACCTGTTCT+AGG + chr4_3:12451787-12451806 None:intergenic 35.0%
!!! CAGACCCAAAATGCATTTTT+TGG + chr4_3:12451870-12451889 None:intergenic 35.0%
!! AAATGCATTTTGGGTCTGTT+TGG - chr4_3:12451872-12451891 Msa0630500:intron 35.0%
!! AATGCATTTTGGGTCTGTTT+GGG - chr4_3:12451873-12451892 Msa0630500:intron 35.0%
! TCATGACGACTGTAAACTTT+TGG + chr4_3:12451982-12452001 None:intergenic 35.0%
CATGAGCTCAATCAATTTCA+TGG - chr4_3:12451997-12452016 Msa0630500:intron 35.0%
!!! GGACATTTTTAGTACGAACT+AGG - chr4_3:12452034-12452053 Msa0630500:intron 35.0%
!! CCTAGTTGGTAAAATGAAGA+AGG + chr4_3:12452070-12452089 None:intergenic 35.0%
! CCTTCTTCATTTTACCAACT+AGG - chr4_3:12452067-12452086 Msa0630500:intron 35.0%
ATGTTTGACTACATCCTAGT+TGG + chr4_3:12452084-12452103 None:intergenic 35.0%
TTAATCATGAGACCTTGATC+GGG - chr4_3:12452323-12452342 Msa0630500:five_prime_UTR 35.0%
AACAAAATTGAACCCGATCA+AGG + chr4_3:12452338-12452357 None:intergenic 35.0%
AAGAAGAGGAAGGAATCGAA+AGG + chr4_3:12447913-12447932 None:intergenic 40.0%
AATGATGCAGAAGAAGAGGA+AGG + chr4_3:12447923-12447942 None:intergenic 40.0%
CAACAATGATGCAGAAGAAG+AGG + chr4_3:12447927-12447946 None:intergenic 40.0%
ACTATACTCCTACACTACAC+AGG + chr4_3:12448043-12448062 None:intergenic 40.0%
TCGCAACTTCGTGAAAGTTA+GGG + chr4_3:12448396-12448415 None:intergenic 40.0%
ATCGCAACTTCGTGAAAGTT+AGG + chr4_3:12448397-12448416 None:intergenic 40.0%
! CTTTCACGAAGTTGCGATTT+TGG - chr4_3:12448399-12448418 Msa0630500:CDS 40.0%
CTACAGTTGCAAAACTTAGG+GGG + chr4_3:12448452-12448471 None:intergenic 40.0%
GCTACAGTTGCAAAACTTAG+GGG + chr4_3:12448453-12448472 None:intergenic 40.0%
CTGCTACAGTTGCAAAACTT+AGG + chr4_3:12448455-12448474 None:intergenic 40.0%
!! TTACCAAAAATTGGCCTTGG+GGG + chr4_3:12448485-12448504 None:intergenic 40.0%
ACCGAGTCAAAATTGGCATT+GGG - chr4_3:12448552-12448571 Msa0630500:intron 40.0%
! CTTTCCCAAAGTTGCGATTT+TGG + chr4_3:12448641-12448660 None:intergenic 40.0%
! TCGCAACTTTGGGAAAGTTA+AGG - chr4_3:12448644-12448663 Msa0630500:intron 40.0%
! CGCAACTTTGGGAAAGTTAA+GGG - chr4_3:12448645-12448664 Msa0630500:intron 40.0%
! GCAACTTTGGGAAAGTTAAG+GGG - chr4_3:12448646-12448665 Msa0630500:intron 40.0%
GCAATACAAACCAACAAGGA+TGG + chr4_3:12448994-12449013 None:intergenic 40.0%
!! TTTTTGGTGAATGGAGGAGA+AGG - chr4_3:12449089-12449108 Msa0630500:intron 40.0%
GAATAGGGTGAACGATAACT+AGG + chr4_3:12449122-12449141 None:intergenic 40.0%
AAAGGGAATGAATGGAAAGG+GGG + chr4_3:12449259-12449278 None:intergenic 40.0%
GGGAATGTAAAGGGAATGAA+TGG + chr4_3:12449267-12449286 None:intergenic 40.0%
GGAAATGAAGGGGAATGTAA+AGG + chr4_3:12449277-12449296 None:intergenic 40.0%
! AACAGCTTTTGCATTGTGGT+TGG - chr4_3:12449417-12449436 Msa0630500:CDS 40.0%
TGTTCCTGAGTTGCTATCAA+TGG - chr4_3:12449478-12449497 Msa0630500:intron 40.0%
! ATCTCCATTGATAGCAACTC+AGG + chr4_3:12449485-12449504 None:intergenic 40.0%
CCCAACATACCCTTGTATTT+AGG + chr4_3:12449736-12449755 None:intergenic 40.0%
! ATACAAGGGTATGTTGGGAA+CGG - chr4_3:12449738-12449757 Msa0630500:intron 40.0%
CTGCATCGTCAATGTTTGTA+TGG - chr4_3:12449820-12449839 Msa0630500:CDS 40.0%
CATCGTCAATGTTTGTATGG+AGG - chr4_3:12449823-12449842 Msa0630500:CDS 40.0%
CAGGTTAAGACTTTCTACAC+GGG - chr4_3:12449964-12449983 Msa0630500:intron 40.0%
AGGTTAAGACTTTCTACACG+GGG - chr4_3:12449965-12449984 Msa0630500:intron 40.0%
CAACAGGTATAGCTCAATTC+TGG - chr4_3:12450040-12450059 Msa0630500:intron 40.0%
! CTCAATTCTGGAAGTTGTTG+TGG - chr4_3:12450052-12450071 Msa0630500:intron 40.0%
AGTTGTAGGCAGTAGTATCA+AGG + chr4_3:12450175-12450194 None:intergenic 40.0%
TCTGCATTTAACACTCAGGA+AGG - chr4_3:12450424-12450443 Msa0630500:CDS 40.0%
GTTGTAACTCATCTCTTTGC+TGG - chr4_3:12450681-12450700 Msa0630500:intron 40.0%
CTAATCATGGTTCGATTAGG+GGG + chr4_3:12450854-12450873 None:intergenic 40.0%
GACAACAGCTGATCTCTTTA+TGG - chr4_3:12450952-12450971 Msa0630500:intron 40.0%
CTCTTTATGGTCCATTAAGG+TGG - chr4_3:12450965-12450984 Msa0630500:intron 40.0%
CTTTATGGTCCATTAAGGTG+GGG - chr4_3:12450967-12450986 Msa0630500:intron 40.0%
! CTTCCTTTTGGTGAATATGC+AGG - chr4_3:12451097-12451116 Msa0630500:intron 40.0%
TGACCTGCATATTCACCAAA+AGG + chr4_3:12451103-12451122 None:intergenic 40.0%
!!! GTTTTAAGAATGAGGTCCAG+GGG - chr4_3:12451425-12451444 Msa0630500:intron 40.0%
!! TTCGGTTGGTTTACCTTCAA+AGG - chr4_3:12451636-12451655 Msa0630500:intron 40.0%
!! TCGGTTGGTTTACCTTCAAA+GGG - chr4_3:12451637-12451656 Msa0630500:intron 40.0%
! GGACCTTTGGCGTTTTATAA+AGG - chr4_3:12451707-12451726 Msa0630500:intron 40.0%
! GATTCCTCCCAAATTTTGGA+CGG - chr4_3:12451729-12451748 Msa0630500:intron 40.0%
ATCCTAGCCGTCCAAAATTT+GGG + chr4_3:12451739-12451758 None:intergenic 40.0%
GCTCAATCAATTTCATGGAG+TGG - chr4_3:12452002-12452021 Msa0630500:intron 40.0%
TTCATGGAGTGGTTTCTATG+TGG - chr4_3:12452013-12452032 Msa0630500:intron 40.0%
CTTCTGCATCATTGTTGCCA+TGG - chr4_3:12447930-12447949 Msa0630500:three_prime_UTR 45.0%
! GGATTTGGAATCTGCAACCA+TGG + chr4_3:12447950-12447969 None:intergenic 45.0%
TCCAAATCCAACCTCTCCTT+TGG - chr4_3:12447961-12447980 Msa0630500:three_prime_UTR 45.0%
ACCAAAGGAGAGGTTGGATT+TGG + chr4_3:12447965-12447984 None:intergenic 45.0%
CATTACCTCAGCGAAACATG+CGG + chr4_3:12448013-12448032 None:intergenic 45.0%
GCAACTTCGTGAAAGTTAGG+GGG + chr4_3:12448394-12448413 None:intergenic 45.0%
CGCAACTTCGTGAAAGTTAG+GGG + chr4_3:12448395-12448414 None:intergenic 45.0%
!! TACCAAAAATTGGCCTTGGG+GGG + chr4_3:12448484-12448503 None:intergenic 45.0%
TAACACGTGTCACCTCACTT+AGG - chr4_3:12448512-12448531 Msa0630500:intron 45.0%
AACACGTGTCACCTCACTTA+GGG - chr4_3:12448513-12448532 Msa0630500:intron 45.0%
AGCGTAGACCGAGTCAAAAT+TGG - chr4_3:12448545-12448564 Msa0630500:intron 45.0%
GACCGAGTCAAAATTGGCAT+TGG - chr4_3:12448551-12448570 Msa0630500:intron 45.0%
!!! CCCCAATGCCAATTTTGACT+CGG + chr4_3:12448556-12448575 None:intergenic 45.0%
CCGAGTCAAAATTGGCATTG+GGG - chr4_3:12448553-12448572 Msa0630500:intron 45.0%
! CGAGTCAAAATTGGCATTGG+GGG - chr4_3:12448554-12448573 Msa0630500:intron 45.0%
! TTTTGCACCTGTGGCAGTTT+TGG + chr4_3:12448580-12448599 None:intergenic 45.0%
TGCCACAGGTGCAAAACTTA+GGG - chr4_3:12448584-12448603 Msa0630500:intron 45.0%
AGGGCCAAAATCGCAACTTT+GGG - chr4_3:12448634-12448653 Msa0630500:intron 45.0%
GTGGAGTAATGTGTCTGGTT+CGG + chr4_3:12448813-12448832 None:intergenic 45.0%
TCAATGGTGGTCAGTCACAA+TGG - chr4_3:12448865-12448884 Msa0630500:intron 45.0%
CAATGGTGGTCAGTCACAAT+GGG - chr4_3:12448866-12448885 Msa0630500:intron 45.0%
GGAAAGGATCAGAATCGACT+GGG + chr4_3:12449203-12449222 None:intergenic 45.0%
TGGAAAGGATCAGAATCGAC+TGG + chr4_3:12449204-12449223 None:intergenic 45.0%
TTGAAGCTGAAGCCTGACTT+TGG + chr4_3:12449680-12449699 None:intergenic 45.0%
CTTCAAAAGCAAGCTGTAGC+TGG - chr4_3:12449694-12449713 Msa0630500:intron 45.0%
AAGAAGGTCTTTCAGCACTC+TGG - chr4_3:12449779-12449798 Msa0630500:intron 45.0%
TAAGACTTTCTACACGGGGA+AGG - chr4_3:12449969-12449988 Msa0630500:intron 45.0%
ATTCAAATCAGAGCACACGG+TGG + chr4_3:12450094-12450113 None:intergenic 45.0%
! TGTTACATCAACAGGTGCTG+TGG - chr4_3:12450203-12450222 Msa0630500:intron 45.0%
! AACAGGTGCTGTGGCAATTA+TGG - chr4_3:12450212-12450231 Msa0630500:intron 45.0%
GCAGAAGGAAAATTACCTCC+TGG - chr4_3:12450273-12450292 Msa0630500:CDS 45.0%
ACAACATTGTCAGTGAACCC+CGG + chr4_3:12450666-12450685 None:intergenic 45.0%
! GGGTTTTTCGCTGTCTGTAT+CGG - chr4_3:12450714-12450733 Msa0630500:intron 45.0%
CAGGTCAAGTCGAGAATGAT+GGG - chr4_3:12451116-12451135 Msa0630500:intron 45.0%
GATAAAGGACAGCCCTTTGA+AGG + chr4_3:12451652-12451671 None:intergenic 45.0%
GATCCTAGCCGTCCAAAATT+TGG + chr4_3:12451740-12451759 None:intergenic 45.0%
! ATTTTGGACGGCTAGGATCT+TGG - chr4_3:12451741-12451760 Msa0630500:intron 45.0%
CTCACATGTTTCTCTCATGC+AGG - chr4_3:12451944-12451963 Msa0630500:intron 45.0%
TTTCTCCGCATGTTTCGCTG+AGG - chr4_3:12448005-12448024 Msa0630500:three_prime_UTR 50.0%
CAGTTGCAAAACTTAGGGGG+CGG + chr4_3:12448449-12448468 None:intergenic 50.0%
CTGCCACAGGTGCAAAACTT+AGG - chr4_3:12448583-12448602 Msa0630500:intron 50.0%
GCCACAGGTGCAAAACTTAG+GGG - chr4_3:12448585-12448604 Msa0630500:intron 50.0%
CCACAGGTGCAAAACTTAGG+GGG - chr4_3:12448586-12448605 Msa0630500:intron 50.0%
GAGGGCCAAAATCGCAACTT+TGG - chr4_3:12448633-12448652 Msa0630500:intron 50.0%
!! ACAATGGGTGTTGACTGCTC+TGG - chr4_3:12448881-12448900 Msa0630500:intron 50.0%
CGGAGGAAACTCAAGGGTAA+TGG + chr4_3:12449175-12449194 None:intergenic 50.0%
GTGGAACGGAGGAAACTCAA+GGG + chr4_3:12449181-12449200 None:intergenic 50.0%
TCAGAATCGACTGGGTGGAA+CGG + chr4_3:12449195-12449214 None:intergenic 50.0%
AAGGATCAGAATCGACTGGG+TGG + chr4_3:12449200-12449219 None:intergenic 50.0%
AGGGGGAAAGTTCCTTCTTC+AGG + chr4_3:12449242-12449261 None:intergenic 50.0%
TTTGGCGGTGTCCAAAGGTA+TGG + chr4_3:12449662-12449681 None:intergenic 50.0%
AAGCTGAAGCCTGACTTTGG+CGG + chr4_3:12449677-12449696 None:intergenic 50.0%
! AAGGGTATGTTGGGAACGGT+TGG - chr4_3:12449742-12449761 Msa0630500:intron 50.0%
AACGGTTGGAACGATTGCCA+GGG - chr4_3:12449756-12449775 Msa0630500:intron 50.0%
TGCTGAAAGACCTTCTTCCC+TGG + chr4_3:12449776-12449795 None:intergenic 50.0%
AGGTCTTTCAGCACTCTGGA+AGG - chr4_3:12449783-12449802 Msa0630500:intron 50.0%
! GGTCTTTCAGCACTCTGGAA+GGG - chr4_3:12449784-12449803 Msa0630500:intron 50.0%
AAACATTGACGATGCAGCCC+TGG + chr4_3:12449817-12449836 None:intergenic 50.0%
! AGGTGCTGTGGCAATTATGG+TGG - chr4_3:12450215-12450234 Msa0630500:intron 50.0%
AATTACCTCCTGGTGTTCCC+AGG - chr4_3:12450283-12450302 Msa0630500:CDS 50.0%
AAAGATCCAGAGTAGCGCCT+GGG + chr4_3:12450303-12450322 None:intergenic 50.0%
AGGAAGGAGTTCGAGCTCTA+TGG - chr4_3:12450440-12450459 Msa0630500:CDS 50.0%
GAGTTCGAGCTCTATGGACA+GGG - chr4_3:12450446-12450465 Msa0630500:CDS 50.0%
GGTCCCAACATAGCGAGAAA+TGG - chr4_3:12450472-12450491 Msa0630500:intron 50.0%
! ACTCATCTCTTTGCTGGCCT+TGG - chr4_3:12450687-12450706 Msa0630500:intron 50.0%
!! CTCATCTCTTTGCTGGCCTT+GGG - chr4_3:12450688-12450707 Msa0630500:intron 50.0%
!! TCATCTCTTTGCTGGCCTTG+GGG - chr4_3:12450689-12450708 Msa0630500:intron 50.0%
GCAGGTCAAGTCGAGAATGA+TGG - chr4_3:12451115-12451134 Msa0630500:intron 50.0%
! GTTTTTCCCCGAATGCCCTA+TGG - chr4_3:12451380-12451399 Msa0630500:intron 50.0%
! AACCCACACCATAGGGCATT+CGG + chr4_3:12451391-12451410 None:intergenic 50.0%
AATGCCCTATGGTGTGGGTT+GGG - chr4_3:12451391-12451410 Msa0630500:intron 50.0%
ATGTCCCAACCCACACCATA+GGG + chr4_3:12451398-12451417 None:intergenic 50.0%
AGCATCAGAAATCGAACCCC+TGG + chr4_3:12451444-12451463 None:intergenic 50.0%
TGGTGTTTCTCAGGGACCTT+TGG - chr4_3:12451694-12451713 Msa0630500:intron 50.0%
CTAGCCGTCCAAAATTTGGG+AGG + chr4_3:12451736-12451755 None:intergenic 50.0%
! CTCCCAAATTTTGGACGGCT+AGG - chr4_3:12451734-12451753 Msa0630500:intron 50.0%
GGTTGGACCAAAGGAGAGGT+TGG + chr4_3:12447971-12447990 None:intergenic 55.0%
CGAAGGTTGGACCAAAGGAG+AGG + chr4_3:12447975-12447994 None:intergenic 55.0%
!! AAAGCACTGCTGGCGAAGGT+TGG + chr4_3:12447988-12448007 None:intergenic 55.0%
!! ACATGCGGAGAAAGCACTGC+TGG + chr4_3:12447998-12448017 None:intergenic 55.0%
!! GTAGCAGTTTTGACCCCCCA+AGG - chr4_3:12448468-12448487 Msa0630500:intron 55.0%
! GACCCCCCAAGGCCAATTTT+TGG - chr4_3:12448479-12448498 Msa0630500:intron 55.0%
! CCCCCTAAGTTTTGCACCTG+TGG + chr4_3:12448589-12448608 None:intergenic 55.0%
CAGGTGCAAAACTTAGGGGG+CGG - chr4_3:12448589-12448608 Msa0630500:intron 55.0%
GGTGGAACGGAGGAAACTCA+AGG + chr4_3:12449182-12449201 None:intergenic 55.0%
CTGACTTTGGCGGTGTCCAA+AGG + chr4_3:12449667-12449686 None:intergenic 55.0%
CTTTGGACACCGCCAAAGTC+AGG - chr4_3:12449665-12449684 Msa0630500:CDS 55.0%
GAACGGTTGGAACGATTGCC+AGG - chr4_3:12449755-12449774 Msa0630500:intron 55.0%
GGAACGATTGCCAGGGAAGA+AGG - chr4_3:12449763-12449782 Msa0630500:intron 55.0%
!! TCTGGAAGGGCATTGTGCCA+GGG - chr4_3:12449797-12449816 Msa0630500:CDS 55.0%
TACACGGGGAAGGACCATGT+GGG - chr4_3:12449979-12449998 Msa0630500:intron 55.0%
ACAGTGGAACATCGCCCACA+TGG + chr4_3:12449996-12450015 None:intergenic 55.0%
CAAAGATCCAGAGTAGCGCC+TGG + chr4_3:12450304-12450323 None:intergenic 55.0%
GGAGTTCGAGCTCTATGGAC+AGG - chr4_3:12450445-12450464 Msa0630500:CDS 55.0%
!! TATCGGCTCCCCAGTTGATG+TGG - chr4_3:12450731-12450750 Msa0630500:intron 55.0%
! ACCCACACCATAGGGCATTC+GGG + chr4_3:12451390-12451409 None:intergenic 55.0%
GAATGCCCTATGGTGTGGGT+TGG - chr4_3:12451390-12451409 Msa0630500:intron 55.0%
CATGTCCCAACCCACACCAT+AGG + chr4_3:12451399-12451418 None:intergenic 55.0%
GCTGGCGAAGGTTGGACCAA+AGG + chr4_3:12447980-12447999 None:intergenic 60.0%
!! GGAGAAAGCACTGCTGGCGA+AGG + chr4_3:12447992-12448011 None:intergenic 60.0%
CTGACGTGGCACCCTAAGTG+AGG + chr4_3:12448527-12448546 None:intergenic 60.0%
!! TGACTCGGTCTACGCTGACG+TGG + chr4_3:12448541-12448560 None:intergenic 60.0%
TTGGGGGCCAAAACTGCCAC+AGG - chr4_3:12448570-12448589 Msa0630500:intron 60.0%
!! GGGTGTTGACTGCTCTGGTC+TGG - chr4_3:12448886-12448905 Msa0630500:intron 60.0%
GAATCGACTGGGTGGAACGG+AGG + chr4_3:12449192-12449211 None:intergenic 60.0%
!! CTCTGGAAGGGCATTGTGCC+AGG - chr4_3:12449796-12449815 Msa0630500:CDS 60.0%
CTACACGGGGAAGGACCATG+TGG - chr4_3:12449978-12449997 Msa0630500:intron 60.0%
CGAGCTCTATGGACAGGGCT+TGG - chr4_3:12450451-12450470 Msa0630500:CDS 60.0%
!! TCTTTGCTGGCCTTGGGGCA+GGG - chr4_3:12450694-12450713 Msa0630500:intron 60.0%
CAGCGAAAAACCCTGCCCCA+AGG + chr4_3:12450707-12450726 None:intergenic 60.0%
TCCCCGAATGCCCTATGGTG+TGG - chr4_3:12451385-12451404 Msa0630500:intron 60.0%
! CCCACACCATAGGGCATTCG+GGG + chr4_3:12451389-12451408 None:intergenic 60.0%
CCCCGAATGCCCTATGGTGT+GGG - chr4_3:12451386-12451405 Msa0630500:intron 60.0%
TAGCGCCTGGGAACACCAGG+AGG + chr4_3:12450291-12450310 None:intergenic 65.0%
GAGTAGCGCCTGGGAACACC+AGG + chr4_3:12450294-12450313 None:intergenic 65.0%
GGTGTTCCCAGGCGCTACTC+TGG - chr4_3:12450294-12450313 Msa0630500:CDS 65.0%
!! CTCTTTGCTGGCCTTGGGGC+AGG - chr4_3:12450693-12450712 Msa0630500:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 12447761 12452376 12447761 ID=Msa0630500;Name=Msa0630500
chr4_3 mRNA 12447761 12452376 12447761 ID=Msa0630500-mRNA-1;Parent=Msa0630500;Name=Msa0630500-mRNA-1;_AED=0.12;_eAED=0.12;_QI=188|1|1|1|1|1|9|375|303
chr4_3 exon 12447761 12448171 12447761 ID=Msa0630500-mRNA-1:exon:3656;Parent=Msa0630500-mRNA-1
chr4_3 exon 12448344 12448430 12448344 ID=Msa0630500-mRNA-1:exon:3655;Parent=Msa0630500-mRNA-1
chr4_3 exon 12448944 12449018 12448944 ID=Msa0630500-mRNA-1:exon:3654;Parent=Msa0630500-mRNA-1
chr4_3 exon 12449385 12449489 12449385 ID=Msa0630500-mRNA-1:exon:3653;Parent=Msa0630500-mRNA-1
chr4_3 exon 12449597 12449695 12449597 ID=Msa0630500-mRNA-1:exon:3652;Parent=Msa0630500-mRNA-1
chr4_3 exon 12449787 12449920 12449787 ID=Msa0630500-mRNA-1:exon:3651;Parent=Msa0630500-mRNA-1
chr4_3 exon 12450092 12450170 12450092 ID=Msa0630500-mRNA-1:exon:3650;Parent=Msa0630500-mRNA-1
chr4_3 exon 12450267 12450485 12450267 ID=Msa0630500-mRNA-1:exon:3649;Parent=Msa0630500-mRNA-1
chr4_3 exon 12452111 12452376 12452111 ID=Msa0630500-mRNA-1:exon:3648;Parent=Msa0630500-mRNA-1
chr4_3 five_prime_UTR 12452189 12452376 12452189 ID=Msa0630500-mRNA-1:five_prime_utr;Parent=Msa0630500-mRNA-1
chr4_3 CDS 12452111 12452188 12452111 ID=Msa0630500-mRNA-1:cds;Parent=Msa0630500-mRNA-1
chr4_3 CDS 12450267 12450485 12450267 ID=Msa0630500-mRNA-1:cds;Parent=Msa0630500-mRNA-1
chr4_3 CDS 12450092 12450170 12450092 ID=Msa0630500-mRNA-1:cds;Parent=Msa0630500-mRNA-1
chr4_3 CDS 12449787 12449920 12449787 ID=Msa0630500-mRNA-1:cds;Parent=Msa0630500-mRNA-1
chr4_3 CDS 12449597 12449695 12449597 ID=Msa0630500-mRNA-1:cds;Parent=Msa0630500-mRNA-1
chr4_3 CDS 12449385 12449489 12449385 ID=Msa0630500-mRNA-1:cds;Parent=Msa0630500-mRNA-1
chr4_3 CDS 12448944 12449018 12448944 ID=Msa0630500-mRNA-1:cds;Parent=Msa0630500-mRNA-1
chr4_3 CDS 12448344 12448430 12448344 ID=Msa0630500-mRNA-1:cds;Parent=Msa0630500-mRNA-1
chr4_3 CDS 12448136 12448171 12448136 ID=Msa0630500-mRNA-1:cds;Parent=Msa0630500-mRNA-1
chr4_3 three_prime_UTR 12447761 12448135 12447761 ID=Msa0630500-mRNA-1:three_prime_utr;Parent=Msa0630500-mRNA-1
Gene Sequence

>Msa0630500

ATGGTTGCAGATTCCAAATCCAACCTCTCCTTTGGTCCAACCTTCGCCAGCAGTGCTTTCTCCGCATGTTTCGCTGAGGTTTGTACCATACCTTTGGACACCGCCAAAGTCAGGCTTCAGCTTCAAAAGCAAGCTGTAGCTGGTGATGTATCCTCTTTACCTAAATACAAGGGTATGTTGGGAACGGTTGGAACGATTGCCAGGGAAGAAGGTCTTTCAGCACTCTGGAAGGGCATTGTGCCAGGGCTGCATCGTCAATGTTTGTATGGAGGATTAAGGATTGGGTTATATGAGCCTGTTAAGACTTTCTACACGGGGAAGGACCATGTGGGCGATGTTCCACTGTCAAAGAAAATTCTAGCTGCATTTACAACAGGTGCTGTGGCAATTATGGTGGCAAATCCAACTGATCTTGTCAAAGTAAGACTTCAAGCAGAAGGAAAATTACCTCCTGGTGTTCCCAGGCGCTACTCTGGATCTTTGAATGCTTATTCGTCAATTGTGAGACAGGAAGGAGTTCGAGCTCTATGGACAGGGCTTGGTCCCAACATAGCGAGAAATGGTATTATCAACGCTGCTGAACTAGCTAGCTATGATCAAGTGAAACAGACTATTTTGAAAATTCCGGGGTTCACTGACAATGTTGTAACTCATCTCTTTGCTGGCCTTGGGGCAGGGTTTTTCGCTGTCTGTATCGGCTCCCCAGTTGATGTGGTCAAGTCGAGAATGATGGGAGATTCTAGTTACAAAAGCACCCTTGATTGCTTTGTCAAAACCTTAAAGAATGATGGACCTTTGGCGTTTTATAAAGGATTCCTCCCAAATTTTGGACGGCTAGGATCTTGGAACGTGATTATGTTTCTAACCCTAGAACAGGCTAAAAAGTTCGCCAAAAGTTTACAGTCGTCATGA

Protein sequence

>Msa0630500

MVADSKSNLSFGPTFASSAFSACFAEVCTIPLDTAKVRLQLQKQAVAGDVSSLPKYKGMLGTVGTIAREEGLSALWKGIVPGLHRQCLYGGLRIGLYEPVKTFYTGKDHVGDVPLSKKILAAFTTGAVAIMVANPTDLVKVRLQAEGKLPPGVPRRYSGSLNAYSSIVRQEGVRALWTGLGPNIARNGIINAAELASYDQVKQTILKIPGFTDNVVTHLFAGLGAGFFAVCIGSPVDVVKSRMMGDSSYKSTLDCFVKTLKNDGPLAFYKGFLPNFGRLGSWNVIMFLTLEQAKKFAKSLQSS*