Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334040 | KAE9603504.1 | 81.232 | 357 | 31 | 4 | 1 | 356 | 1 | 322 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334040 | sp|P26360|ATPG3_IPOBA | 75.350 | 357 | 56 | 4 | 1 | 356 | 1 | 326 | 0.0 | 534 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334040 | A0A072UU27 | 91.573 | 356 | 1 | 1 | 1 | 356 | 1 | 327 | 0.0 | 645 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0630500 | Msa1334040 | 0.800682 | 1.285172e-48 | -8.615850e-47 |
| Msa0189080 | Msa1334040 | 0.807726 | 4.390266e-50 | -8.615850e-47 |
| Msa1019190 | Msa1334040 | 0.802319 | 5.934663e-49 | -8.615850e-47 |
| Msa1046140 | Msa1334040 | 0.823685 | 1.212628e-53 | -8.615850e-47 |
| Msa0304270 | Msa1334040 | 0.817614 | 3.009385e-52 | -8.615850e-47 |
| Msa0304310 | Msa1334040 | 0.833022 | 6.768183e-56 | -8.615850e-47 |
| Msa1119970 | Msa1334040 | 0.810486 | 1.125617e-50 | -8.615850e-47 |
| Msa1157630 | Msa1334040 | 0.822181 | 2.717525e-53 | -8.615850e-47 |
| Msa1222140 | Msa1334040 | 0.946073 | 9.244137e-105 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334040 | MtrunA17_Chr4g0073341 | 91.573 | 356 | 1 | 1 | 1 | 356 | 1 | 327 | 0.0 | 645 |
| Msa1334040 | MtrunA17_Chr2g0288451 | 27.750 | 400 | 192 | 14 | 17 | 354 | 9 | 373 | 1.77e-23 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334040 | AT2G33040.1 | 72.599 | 354 | 64 | 4 | 1 | 354 | 1 | 321 | 0.0 | 507 |
| Msa1334040 | AT4G04640.1 | 27.865 | 384 | 188 | 11 | 15 | 353 | 32 | 371 | 7.12e-26 | 107 |
Find 102 sgRNAs with CRISPR-Local
Find 355 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGTTGACCAGATATTTC+TGG | 0.183476 | 8_4:-54341143 | Msa1334040:three_prime_UTR |
| CGTTCTATTTCCACTCAAAT+TGG | 0.218648 | 8_4:-54345846 | Msa1334040:intron |
| AACTCGCCTTGGGGATTTCT+TGG | 0.218664 | 8_4:-54341161 | Msa1334040:three_prime_UTR |
| AAACGATTATTATTATAAAA+AGG | 0.224110 | 8_4:+54341192 | None:intergenic |
| CAAAGGCCAATAGTTATTAT+TGG | 0.237572 | 8_4:+54341051 | None:intergenic |
| ACATACTTTGTCTCTTTATC+AGG | 0.264351 | 8_4:+54344728 | None:intergenic |
| GCCTTGAGCAAGTTGAATTC+TGG | 0.280287 | 8_4:-54345037 | Msa1334040:intron |
| TGCAGAGATCAATCTTCTAT+TGG | 0.301364 | 8_4:-54345876 | Msa1334040:intron |
| TTATTTCCAATAATAACTAT+TGG | 0.339761 | 8_4:-54341057 | Msa1334040:three_prime_UTR |
| TGGTTTGTGGCAGCCATTTA+CGG | 0.342195 | 8_4:-54345579 | Msa1334040:CDS |
| AGAGACAAAGTATGTCATAT+TGG | 0.347992 | 8_4:-54344720 | Msa1334040:CDS |
| AGTGGTGTTGATTGGTGGTT+GGG | 0.356057 | 8_4:+54346004 | None:intergenic |
| TTGTACGTACGCAAGAAAAC+TGG | 0.369183 | 8_4:+54343570 | None:intergenic |
| GTCTGACCCTCACTTATAAT+AGG | 0.386053 | 8_4:-54341541 | Msa1334040:intron |
| TTCAAGGCGAAACTCGCCTT+GGG | 0.387468 | 8_4:-54341171 | Msa1334040:three_prime_UTR |
| CCAAACCTATTTGCTACTAT+AGG | 0.389570 | 8_4:-54344752 | Msa1334040:CDS |
| GAGACAAAGTATGTCATATT+GGG | 0.404543 | 8_4:-54344719 | Msa1334040:CDS |
| TCACCGAGAAGAGCCGTAAA+TGG | 0.407251 | 8_4:+54345566 | None:intergenic |
| CAGGTCCTATAGTAGCAAAT+AGG | 0.408714 | 8_4:+54344747 | None:intergenic |
| CAGCCATTTACGGCTCTTCT+CGG | 0.412957 | 8_4:-54345569 | Msa1334040:CDS |
| TTATAATAATAATCGTTTCA+AGG | 0.413740 | 8_4:-54341187 | Msa1334040:three_prime_UTR |
| TTGTAGGTGTTATTTGGGCA+AGG | 0.419437 | 8_4:+54340977 | None:intergenic |
| CTGAAAATTCACGTGGTTTG+TGG | 0.419923 | 8_4:-54345592 | Msa1334040:CDS |
| TGAGATTCTGGTAATGGTAA+TGG | 0.420483 | 8_4:-54344777 | Msa1334040:CDS |
| AAAACAATTCCAGAAATATC+TGG | 0.429809 | 8_4:+54341134 | None:intergenic |
| GACAGCTCTAGCAGGAATGC+TGG | 0.431443 | 8_4:-54341578 | Msa1334040:CDS |
| TGGAGGAAGTCTCGGTGAAC+TGG | 0.443236 | 8_4:-54343654 | Msa1334040:CDS |
| CCTTGCTCCTTGCTCACTGC+AGG | 0.446628 | 8_4:+54341613 | None:intergenic |
| GAATTGATTGAGATTATCTC+TGG | 0.446916 | 8_4:-54341339 | Msa1334040:CDS |
| CCTATAGTAGCAAATAGGTT+TGG | 0.452616 | 8_4:+54344752 | None:intergenic |
| TGTAGGTGTTATTTGGGCAA+GGG | 0.459087 | 8_4:+54340978 | None:intergenic |
| TTGTTTGTGCAGTGAGAAAT+CGG | 0.465696 | 8_4:-54345700 | Msa1334040:intron |
| ATGACGATATTGAGATATAT+CGG | 0.467507 | 8_4:-54341260 | Msa1334040:three_prime_UTR |
| TCTTCAGACAAAGGTCTTTG+TGG | 0.469713 | 8_4:-54345094 | Msa1334040:CDS |
| GATCGGAGAGTGGTGTTGAT+TGG | 0.474940 | 8_4:+54345996 | None:intergenic |
| GAGTGGTGTTGATTGGTGGT+TGG | 0.475949 | 8_4:+54346003 | None:intergenic |
| GTCATTGTCAAATATAATAC+AGG | 0.476926 | 8_4:+54341278 | None:intergenic |
| AAGACCTTTGTCTGAAGAAA+CGG | 0.482952 | 8_4:+54345099 | None:intergenic |
| CTGGATTCGTATGAGATTGA+AGG | 0.483416 | 8_4:-54343635 | Msa1334040:CDS |
| CGATATTGAGATATATCGGT+TGG | 0.487663 | 8_4:-54341256 | Msa1334040:three_prime_UTR |
| CTCGAACTGTTATTTACTTG+TGG | 0.488869 | 8_4:-54341025 | Msa1334040:three_prime_UTR |
| CCACGTCTGTCAAGATAAGC+AGG | 0.495862 | 8_4:-54345060 | Msa1334040:CDS |
| AGAGATCAATCTTCTATTGG+AGG | 0.496751 | 8_4:-54345873 | Msa1334040:CDS |
| TGCTTAACTCTTCAATGAGA+AGG | 0.497288 | 8_4:+54346203 | None:intergenic |
| ACAGCTCTAGCAGGAATGCT+GGG | 0.501839 | 8_4:-54341577 | Msa1334040:CDS |
| CATGTAGATTGTTGAAAGAG+AGG | 0.506420 | 8_4:-54343684 | Msa1334040:intron |
| GTTGAAAGAGAGGCTGAAGC+TGG | 0.508534 | 8_4:-54343674 | Msa1334040:CDS |
| CGGAGAGTGGTGTTGATTGG+TGG | 0.512550 | 8_4:+54345999 | None:intergenic |
| TTTCAAGGCGAAACTCGCCT+TGG | 0.515735 | 8_4:-54341172 | Msa1334040:three_prime_UTR |
| AACTACGTGCTGTTCAAACC+AGG | 0.516036 | 8_4:-54345616 | Msa1334040:CDS |
| GATGAGAGGAGATCGGAGAG+TGG | 0.516462 | 8_4:+54345986 | None:intergenic |
| CTGCCATGGACAGCTCTAGC+AGG | 0.525991 | 8_4:-54341586 | Msa1334040:CDS |
| GAATATTCAGAAAATTACTA+AGG | 0.532506 | 8_4:-54345663 | Msa1334040:CDS |
| GCTGAAGCTGGAGGAAGTCT+CGG | 0.540570 | 8_4:-54343662 | Msa1334040:CDS |
| TCTGGAGCATCAGCACTGAC+AGG | 0.540615 | 8_4:-54341321 | Msa1334040:CDS |
| GCTGCTGCACTCCGACGCGA+AGG | 0.542082 | 8_4:-54346053 | Msa1334040:CDS |
| AATTACTAAGGCTATGAAGA+TGG | 0.542804 | 8_4:-54345651 | Msa1334040:CDS |
| TGTTGCTAGTAGTGAAATGA+AGG | 0.545444 | 8_4:+54346166 | None:intergenic |
| TGGATTCGTATGAGATTGAA+GGG | 0.556021 | 8_4:-54343634 | Msa1334040:CDS |
| AATGAAAGTACCAATTTGAG+TGG | 0.558490 | 8_4:+54345836 | None:intergenic |
| TCAGACAAAGGTCTTTGTGG+TGG | 0.558554 | 8_4:-54345091 | Msa1334040:CDS |
| GTATGTCATATTGGGAGAGA+AGG | 0.558989 | 8_4:-54344711 | Msa1334040:CDS |
| GCTTAACTCTTCAATGAGAA+GGG | 0.565107 | 8_4:+54346204 | None:intergenic |
| GAGAATGCCTGCAGTGAGCA+AGG | 0.566041 | 8_4:-54341620 | Msa1334040:CDS |
| AAAGATACCTATTATAAGTG+AGG | 0.568709 | 8_4:+54341534 | None:intergenic |
| CTGCTGCACTCCGACGCGAA+GGG | 0.583053 | 8_4:-54346052 | Msa1334040:CDS |
| AAGATACCTATTATAAGTGA+GGG | 0.587593 | 8_4:+54341535 | None:intergenic |
| GGTCATGTTCAATGCGGTGT+TGG | 0.590854 | 8_4:-54341642 | Msa1334040:CDS |
| CGTTGTACAATTTCTACCAA+CGG | 0.590879 | 8_4:-54343928 | Msa1334040:CDS |
| GATAATCTCAATCAATTCAG+TGG | 0.592679 | 8_4:+54341344 | None:intergenic |
| AGGAGCAAGGATGTCTGCCA+TGG | 0.594950 | 8_4:-54341600 | Msa1334040:CDS |
| AGGGAGAGATGAGAGGAGAT+CGG | 0.599654 | 8_4:+54345979 | None:intergenic |
| ACGAAAGAATCTCAAATCGA+TGG | 0.600840 | 8_4:-54346081 | Msa1334040:exon |
| GAATCTCAAATCGATGGCGA+TGG | 0.602234 | 8_4:-54346075 | Msa1334040:exon |
| AATAACAGTTCGAGAAACAA+AGG | 0.603461 | 8_4:+54341034 | None:intergenic |
| GAATCCTCTGAATTATACTC+AGG | 0.606536 | 8_4:-54344624 | Msa1334040:intron |
| ATTACCGTTTCTTCAGACAA+AGG | 0.610426 | 8_4:-54345103 | Msa1334040:CDS |
| ACGAACAAGGGAGAGATGAG+AGG | 0.612203 | 8_4:+54345972 | None:intergenic |
| ATTCCTGCTAGAGCTGTCCA+TGG | 0.613830 | 8_4:+54341583 | None:intergenic |
| GAAAGAGAGGCTGAAGCTGG+AGG | 0.621120 | 8_4:-54343671 | Msa1334040:CDS |
| CCTGCAGTGAGCAAGGAGCA+AGG | 0.624108 | 8_4:-54341613 | Msa1334040:CDS |
| CTAACCTGAGTATAATTCAG+AGG | 0.633689 | 8_4:+54344620 | None:intergenic |
| TCGCTGAGAGAGAGAAAGAG+AGG | 0.639910 | 8_4:+54346107 | None:intergenic |
| CAGCTCTAGCAGGAATGCTG+GGG | 0.652373 | 8_4:-54341576 | Msa1334040:CDS |
| CATATTGGGAGAGAAGGCTA+AGG | 0.655816 | 8_4:-54344705 | Msa1334040:CDS |
| CCTGCTTATCTTGACAGACG+TGG | 0.656536 | 8_4:+54345060 | None:intergenic |
| ACCAGAATTCAACTTGCTCA+AGG | 0.662579 | 8_4:+54345036 | None:intergenic |
| TCAAGGCGAAACTCGCCTTG+GGG | 0.669714 | 8_4:-54341170 | Msa1334040:three_prime_UTR |
| TACGCAAGAAAACTGGAACT+CGG | 0.672354 | 8_4:+54343577 | None:intergenic |
| CACGTCTGTCAAGATAAGCA+GGG | 0.673248 | 8_4:-54345059 | Msa1334040:CDS |
| CTAAACGCTTCCCTTCGCGT+CGG | 0.678943 | 8_4:+54346042 | None:intergenic |
| ACCAGGGCTGAAAATTCACG+TGG | 0.682606 | 8_4:-54345599 | Msa1334040:CDS |
| GGTGGTTGGGAAGACATGAG+AGG | 0.683704 | 8_4:+54346017 | None:intergenic |
| GATAGTATAGTTGACACCGT+TGG | 0.683787 | 8_4:+54343912 | None:intergenic |
| GGATTCGTATGAGATTGAAG+GGG | 0.696951 | 8_4:-54343633 | Msa1334040:CDS |
| ACTACGTGCTGTTCAAACCA+GGG | 0.699734 | 8_4:-54345615 | Msa1334040:CDS |
| GATTCGTATGAGATTGAAGG+GGG | 0.707101 | 8_4:-54343632 | Msa1334040:CDS |
| CGTTGGTAGAAATTGTACAA+CGG | 0.712891 | 8_4:+54343929 | None:intergenic |
| GGTCAACCAAGAAATCCCCA+AGG | 0.723576 | 8_4:+54341155 | None:intergenic |
| TATATAGGTCATGTTCAATG+CGG | 0.738383 | 8_4:-54341648 | Msa1334040:intron |
| AATAGATGAAAGTACCTCGG+GGG | 0.741176 | 8_4:+54343890 | None:intergenic |
| ACGTGGAGTATGATGCACTG+AGG | 0.781586 | 8_4:-54343974 | Msa1334040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAAAAGAATAATAATTA+GGG | + | chr8_4:54341421-54341440 | None:intergenic | 10.0% |
| !! | AAATGAAAAGAATAATAATT+AGG | + | chr8_4:54341422-54341441 | None:intergenic | 10.0% |
| !! | AAACGATTATTATTATAAAA+AGG | + | chr8_4:54346030-54346049 | None:intergenic | 10.0% |
| !! | CAAATTGTAACAAAATAAAA+AGG | + | chr8_4:54341709-54341728 | None:intergenic | 15.0% |
| !!! | TCCTAAATTAAATTGTTTTA+AGG | - | chr8_4:54342674-54342693 | Msa1334040:intron | 15.0% |
| !!! | TCCTTAAAACAATTTAATTT+AGG | + | chr8_4:54342678-54342697 | None:intergenic | 15.0% |
| !! | TTAAGGAATATTGAAAAATA+TGG | - | chr8_4:54342691-54342710 | Msa1334040:intron | 15.0% |
| !!! | ATGTTTAAATAGCTTATTTT+GGG | + | chr8_4:54343070-54343089 | None:intergenic | 15.0% |
| !!! | AATGTTTAAATAGCTTATTT+TGG | + | chr8_4:54343071-54343090 | None:intergenic | 15.0% |
| !! | AACAATTAAAACTAAACAAT+GGG | + | chr8_4:54343184-54343203 | None:intergenic | 15.0% |
| !! | TTGAAATTATATACAACATT+CGG | - | chr8_4:54344760-54344779 | Msa1334040:CDS | 15.0% |
| !!! | ATACTTTATTTGTTGTATAT+AGG | - | chr8_4:54345556-54345575 | Msa1334040:intron | 15.0% |
| !! | TTATAATAATAATCGTTTCA+AGG | - | chr8_4:54346032-54346051 | Msa1334040:CDS | 15.0% |
| !! | TTATTTCCAATAATAACTAT+TGG | - | chr8_4:54346162-54346181 | Msa1334040:five_prime_UTR | 15.0% |
| !! | TGTTAGATTTATGATGAATT+AGG | - | chr8_4:54341454-54341473 | Msa1334040:intron | 20.0% |
| !!! | AATAAATTTTGACTGTGTTA+TGG | - | chr8_4:54341486-54341505 | Msa1334040:intron | 20.0% |
| !! | GAATATTCAGAAAATTACTA+AGG | - | chr8_4:54341556-54341575 | Msa1334040:CDS | 20.0% |
| !! | CGTTATCTTATAAACAATTT+AGG | + | chr8_4:54342388-54342407 | None:intergenic | 20.0% |
| !! | AGATATATATGTAAAACACA+AGG | + | chr8_4:54342759-54342778 | None:intergenic | 20.0% |
| !! | TTGAAAACAAAGTTTACAAT+TGG | - | chr8_4:54342778-54342797 | Msa1334040:intron | 20.0% |
| !! | TTCAATATTCAACAACAAAA+AGG | + | chr8_4:54342943-54342962 | None:intergenic | 20.0% |
| !! | TTCAATATTCAACAACAAAA+AGG | + | chr8_4:54342943-54342962 | None:intergenic | 20.0% |
| !!! | TGTTTAAATAGCTTATTTTG+GGG | + | chr8_4:54343069-54343088 | None:intergenic | 20.0% |
| !! | CAACAATTAAAACTAAACAA+TGG | + | chr8_4:54343185-54343204 | None:intergenic | 20.0% |
| !!! | GTTTTAATTGTTGTATTTTC+AGG | - | chr8_4:54343192-54343211 | Msa1334040:intron | 20.0% |
| !!! | TATTGCAAAATAAGTTTTCA+TGG | + | chr8_4:54343458-54343477 | None:intergenic | 20.0% |
| !!! | AAAACTTATTTTGCAATATC+AGG | - | chr8_4:54343460-54343479 | Msa1334040:intron | 20.0% |
| !! | TAGAATATAAAATGCTATCT+GGG | - | chr8_4:54343853-54343872 | Msa1334040:intron | 20.0% |
| !! | TTAAGATGATTATGATTTCA+TGG | - | chr8_4:54344049-54344068 | Msa1334040:intron | 20.0% |
| !! | TAACTAAGTATAAATAGGTA+CGG | + | chr8_4:54344330-54344349 | None:intergenic | 20.0% |
| !! | CGAAATAACTAAGTATAAAT+AGG | + | chr8_4:54344335-54344354 | None:intergenic | 20.0% |
| !!! | TTTTGATCAAAATAGTAGAA+GGG | - | chr8_4:54344413-54344432 | Msa1334040:intron | 20.0% |
| !!! | AATTTTAAAAAATGAAGGTC+CGG | + | chr8_4:54344531-54344550 | None:intergenic | 20.0% |
| !! | AAGTATAAAAGAAACGAAAA+AGG | + | chr8_4:54345023-54345042 | None:intergenic | 20.0% |
| !! | TTTATCATTATAAACTTGAC+AGG | + | chr8_4:54345230-54345249 | None:intergenic | 20.0% |
| !! | ATAAGTATAATTTGAAAGAG+AGG | + | chr8_4:54345530-54345549 | None:intergenic | 20.0% |
| !!! | TTTAGACAAAATTTTTGTTC+TGG | - | chr8_4:54345746-54345765 | Msa1334040:intron | 20.0% |
| ! | AGAACTGTATTAAAAAGCTA+GGG | - | chr8_4:54341087-54341106 | Msa1334040:three_prime_UTR | 25.0% |
| ! | GAAAAGGATTAAAGAGAAAA+TGG | + | chr8_4:54341297-54341316 | None:intergenic | 25.0% |
| ! | TTGTATGATTGTGCAATAAT+TGG | - | chr8_4:54341753-54341772 | Msa1334040:intron | 25.0% |
| ! | TCCTATTCATCAAAAATCAA+GGG | + | chr8_4:54341979-54341998 | None:intergenic | 25.0% |
| ! | TTCCTATTCATCAAAAATCA+AGG | + | chr8_4:54341980-54341999 | None:intergenic | 25.0% |
| !!! | ATATTTTGAGATTCTGGTAA+TGG | - | chr8_4:54342436-54342455 | Msa1334040:intron | 25.0% |
| ! | CTAGATATATGTAAAACACA+AGG | + | chr8_4:54342641-54342660 | None:intergenic | 25.0% |
| !!! | TCCTGAATTAGTTTGTTATA+AGG | - | chr8_4:54342801-54342820 | Msa1334040:intron | 25.0% |
| ! | TCCTTATAACAAACTAATTC+AGG | + | chr8_4:54342805-54342824 | None:intergenic | 25.0% |
| !! | TTTTCTGACTGAATATAATG+TGG | - | chr8_4:54342871-54342890 | Msa1334040:intron | 25.0% |
| !!! | AAAAAGGTTTTAATGTCACT+GGG | + | chr8_4:54342927-54342946 | None:intergenic | 25.0% |
| !!! | GTTTAAATAGCTTATTTTGG+GGG | + | chr8_4:54343068-54343087 | None:intergenic | 25.0% |
| ! | AGCTATTTAAACATTCATTG+TGG | - | chr8_4:54343076-54343095 | Msa1334040:intron | 25.0% |
| !!! | TTTAATAGATGAAAGTACCT+CGG | + | chr8_4:54343335-54343354 | None:intergenic | 25.0% |
| ! | CTAATTCAAATTGACGAAAT+GGG | + | chr8_4:54343721-54343740 | None:intergenic | 25.0% |
| ! | ACTAATTCAAATTGACGAAA+TGG | + | chr8_4:54343722-54343741 | None:intergenic | 25.0% |
| !! | CAGATAGCATTTTATATTCT+AGG | + | chr8_4:54343854-54343873 | None:intergenic | 25.0% |
| ! | CTAGAATATAAAATGCTATC+TGG | - | chr8_4:54343852-54343871 | Msa1334040:intron | 25.0% |
| ! | AAAATTTGGTATAGAGAGTA+AGG | + | chr8_4:54343914-54343933 | None:intergenic | 25.0% |
| !!! | AAACTTGTTACAAAGTCAAT+AGG | + | chr8_4:54344016-54344035 | None:intergenic | 25.0% |
| ! | ATCATAATCATCTTAATGCA+AGG | + | chr8_4:54344045-54344064 | None:intergenic | 25.0% |
| ! | TGATATCACTTTACTTTCAA+AGG | - | chr8_4:54344110-54344129 | Msa1334040:intron | 25.0% |
| !! | TAGATATTTTCAAAACCACT+AGG | + | chr8_4:54344184-54344203 | None:intergenic | 25.0% |
| !! | GATCAAAAGCAAGATAATTT+TGG | + | chr8_4:54344401-54344420 | None:intergenic | 25.0% |
| !! | CTTTTGATCAAAATAGTAGA+AGG | - | chr8_4:54344412-54344431 | Msa1334040:intron | 25.0% |
| !!! | ATTTTAAAAAATGAAGGTCC+GGG | + | chr8_4:54344530-54344549 | None:intergenic | 25.0% |
| !!! | CGGCAAATTTTAAAAAATGA+AGG | + | chr8_4:54344536-54344555 | None:intergenic | 25.0% |
| !! | TTGTAGTTAGTTGATATTGT+TGG | - | chr8_4:54344814-54344833 | Msa1334040:CDS | 25.0% |
| ! | ATTAGAGGATGCATATAATA+TGG | - | chr8_4:54344862-54344881 | Msa1334040:intron | 25.0% |
| ! | TTAGAGGATGCATATAATAT+GGG | - | chr8_4:54344863-54344882 | Msa1334040:intron | 25.0% |
| ! | ATAATATGGGTGAAGTAATA+AGG | - | chr8_4:54344876-54344895 | Msa1334040:intron | 25.0% |
| ! | TAATATGGGTGAAGTAATAA+GGG | - | chr8_4:54344877-54344896 | Msa1334040:intron | 25.0% |
| ! | CCAAATAAAACTATGTAGTT+GGG | + | chr8_4:54345316-54345335 | None:intergenic | 25.0% |
| ! | TCCAAATAAAACTATGTAGT+TGG | + | chr8_4:54345317-54345336 | None:intergenic | 25.0% |
| ! | AATCAATAAGCACAATATTC+AGG | + | chr8_4:54345428-54345447 | None:intergenic | 25.0% |
| ! | AAGATACCTATTATAAGTGA+GGG | + | chr8_4:54345687-54345706 | None:intergenic | 25.0% |
| ! | AAAGATACCTATTATAAGTG+AGG | + | chr8_4:54345688-54345707 | None:intergenic | 25.0% |
| ! | GTCATTGTCAAATATAATAC+AGG | + | chr8_4:54345944-54345963 | None:intergenic | 25.0% |
| ! | ATGACGATATTGAGATATAT+CGG | - | chr8_4:54345959-54345978 | Msa1334040:intron | 25.0% |
| !!! | TTGGTTTCTTTTGAAATTGT+TGG | - | chr8_4:54345982-54346001 | Msa1334040:CDS | 25.0% |
| ! | AAAACAATTCCAGAAATATC+TGG | + | chr8_4:54346088-54346107 | None:intergenic | 25.0% |
| CAGAACTGTATTAAAAAGCT+AGG | - | chr8_4:54341086-54341105 | Msa1334040:three_prime_UTR | 30.0% | |
| AATGAAGAGGCTAATTGAAA+AGG | + | chr8_4:54341313-54341332 | None:intergenic | 30.0% | |
| GCAATAGAAATGAAATGAAG+AGG | + | chr8_4:54341326-54341345 | None:intergenic | 30.0% | |
| !! | AATGAAAGTACCAATTTGAG+TGG | + | chr8_4:54341386-54341405 | None:intergenic | 30.0% |
| AATTACTAAGGCTATGAAGA+TGG | - | chr8_4:54341568-54341587 | Msa1334040:CDS | 30.0% | |
| ! | ACCCTTGATTTTTGATGAAT+AGG | - | chr8_4:54341975-54341994 | Msa1334040:intron | 30.0% |
| ! | GGTTCCTTTTATATTCTTTC+AGG | - | chr8_4:54342068-54342087 | Msa1334040:intron | 30.0% |
| AACGCCTGAAAGAATATAAA+AGG | + | chr8_4:54342075-54342094 | None:intergenic | 30.0% | |
| AAATACAAGTGATGCAATTG+TGG | + | chr8_4:54342272-54342291 | None:intergenic | 30.0% | |
| TTGAAATTGCAGACAATTGT+GGG | + | chr8_4:54342296-54342315 | None:intergenic | 30.0% | |
| !!! | AAAGGTTCTAAATTTTGTCG+GGG | + | chr8_4:54342339-54342358 | None:intergenic | 30.0% |
| !!! | CAAAGGTTCTAAATTTTGTC+GGG | + | chr8_4:54342340-54342359 | None:intergenic | 30.0% |
| !!! | GCAAAGGTTCTAAATTTTGT+CGG | + | chr8_4:54342341-54342360 | None:intergenic | 30.0% |
| AACAGTATTTCACATTGCAA+AGG | + | chr8_4:54342357-54342376 | None:intergenic | 30.0% | |
| !!! | GCTGAAATATTTTGAGATTC+TGG | - | chr8_4:54342430-54342449 | Msa1334040:intron | 30.0% |
| ACATACTTTGTCTCTTTATC+AGG | + | chr8_4:54342494-54342513 | None:intergenic | 30.0% | |
| AGAGACAAAGTATGTCATAT+TGG | - | chr8_4:54342499-54342518 | Msa1334040:intron | 30.0% | |
| GAGACAAAGTATGTCATATT+GGG | - | chr8_4:54342500-54342519 | Msa1334040:intron | 30.0% | |
| AATATGGACATTGCTCTTAA+TGG | - | chr8_4:54342707-54342726 | Msa1334040:intron | 30.0% | |
| !! | CAAAAAGGTTTTAATGTCAC+TGG | + | chr8_4:54342928-54342947 | None:intergenic | 30.0% |
| ATATTCAACAACAAAAAGGC+AGG | + | chr8_4:54342967-54342986 | None:intergenic | 30.0% | |
| CTAAACAATGGGTATATACT+CGG | + | chr8_4:54343173-54343192 | None:intergenic | 30.0% | |
| !! | TTAATAGATGAAAGTACCTC+GGG | + | chr8_4:54343334-54343353 | None:intergenic | 30.0% |
| GGGAAAAACTTCATTACAAT+AGG | + | chr8_4:54343373-54343392 | None:intergenic | 30.0% | |
| ! | ATTGTAATGAAGTTTTTCCC+AGG | - | chr8_4:54343373-54343392 | Msa1334040:intron | 30.0% |
| TTGACAATATTTCATGTCAG+GGG | + | chr8_4:54343400-54343419 | None:intergenic | 30.0% | |
| CTTGACAATATTTCATGTCA+GGG | + | chr8_4:54343401-54343420 | None:intergenic | 30.0% | |
| ACTTGACAATATTTCATGTC+AGG | + | chr8_4:54343402-54343421 | None:intergenic | 30.0% | |
| AGTATACAACAAAGTTTGTC+AGG | + | chr8_4:54343687-54343706 | None:intergenic | 30.0% | |
| ATTCAAAATATGACACTGCA+AGG | - | chr8_4:54343773-54343792 | Msa1334040:intron | 30.0% | |
| TAGAGGAAAGTGAGAAAATT+TGG | + | chr8_4:54343928-54343947 | None:intergenic | 30.0% | |
| GATGATTATGATTTCATGGA+TGG | - | chr8_4:54344053-54344072 | Msa1334040:intron | 30.0% | |
| AAGTATAAATAGGTACGGTT+CGG | + | chr8_4:54344325-54344344 | None:intergenic | 30.0% | |
| GAGTATATATGAACTCTGAA+TGG | + | chr8_4:54344716-54344735 | None:intergenic | 30.0% | |
| TATATACAACATTCGGTATC+TGG | - | chr8_4:54344767-54344786 | Msa1334040:CDS | 30.0% | |
| GTTAGATAACTAGTTAGAGA+CGG | - | chr8_4:54344836-54344855 | Msa1334040:intron | 30.0% | |
| TTAGATAACTAGTTAGAGAC+GGG | - | chr8_4:54344837-54344856 | Msa1334040:intron | 30.0% | |
| AATATGGGTGAAGTAATAAG+GGG | - | chr8_4:54344878-54344897 | Msa1334040:intron | 30.0% | |
| GAAAATATGAACAACACTTG+AGG | + | chr8_4:54344948-54344967 | None:intergenic | 30.0% | |
| ACTGACCATTTAATTATGAG+AGG | - | chr8_4:54345082-54345101 | Msa1334040:CDS | 30.0% | |
| CTGACCATTTAATTATGAGA+GGG | - | chr8_4:54345083-54345102 | Msa1334040:CDS | 30.0% | |
| !!! | CCCAACTACATAGTTTTATT+TGG | - | chr8_4:54345313-54345332 | Msa1334040:intron | 30.0% |
| CTTGTTAACACAAAAGAATC+AGG | + | chr8_4:54345387-54345406 | None:intergenic | 30.0% | |
| CTCAATAAAAAAGCAGCAAA+AGG | + | chr8_4:54345467-54345486 | None:intergenic | 30.0% | |
| TATATAGGTCATGTTCAATG+CGG | - | chr8_4:54345571-54345590 | Msa1334040:CDS | 30.0% | |
| AGTTACTGATGCAATTATAC+AGG | + | chr8_4:54345777-54345796 | None:intergenic | 30.0% | |
| GATAATCTCAATCAATTCAG+TGG | + | chr8_4:54345878-54345897 | None:intergenic | 30.0% | |
| GAATTGATTGAGATTATCTC+TGG | - | chr8_4:54345880-54345899 | Msa1334040:intron | 30.0% | |
| !!! | GGAATTGTTTTTTGATGTTG+AGG | - | chr8_4:54346097-54346116 | Msa1334040:five_prime_UTR | 30.0% |
| CAAAGGCCAATAGTTATTAT+TGG | + | chr8_4:54346171-54346190 | None:intergenic | 30.0% | |
| AATAACAGTTCGAGAAACAA+AGG | + | chr8_4:54346188-54346207 | None:intergenic | 30.0% | |
| GCTTAACTCTTCAATGAGAA+GGG | + | chr8_4:54341018-54341037 | None:intergenic | 35.0% | |
| TGCTTAACTCTTCAATGAGA+AGG | + | chr8_4:54341019-54341038 | None:intergenic | 35.0% | |
| TGTTGCTAGTAGTGAAATGA+AGG | + | chr8_4:54341056-54341075 | None:intergenic | 35.0% | |
| ACGAAAGAATCTCAAATCGA+TGG | - | chr8_4:54341138-54341157 | Msa1334040:three_prime_UTR | 35.0% | |
| TGCAGAGATCAATCTTCTAT+TGG | - | chr8_4:54341343-54341362 | Msa1334040:CDS | 35.0% | |
| AGAGATCAATCTTCTATTGG+AGG | - | chr8_4:54341346-54341365 | Msa1334040:CDS | 35.0% | |
| CGTTCTATTTCCACTCAAAT+TGG | - | chr8_4:54341373-54341392 | Msa1334040:intron | 35.0% | |
| TTGTTTGTGCAGTGAGAAAT+CGG | - | chr8_4:54341519-54341538 | Msa1334040:intron | 35.0% | |
| GACTGAAAACAAAGACTGAA+TGG | - | chr8_4:54341777-54341796 | Msa1334040:intron | 35.0% | |
| TTGATTGTAACCACACATGT+CGG | - | chr8_4:54341873-54341892 | Msa1334040:intron | 35.0% | |
| GAATGTGTGTCTAGTATTGT+TGG | + | chr8_4:54341924-54341943 | None:intergenic | 35.0% | |
| ! | ACACATTCAATCAGAAGTGT+GGG | - | chr8_4:54341936-54341955 | Msa1334040:intron | 35.0% |
| CATCAAAAATCAAGGGTGAA+GGG | + | chr8_4:54341972-54341991 | None:intergenic | 35.0% | |
| TCATCAAAAATCAAGGGTGA+AGG | + | chr8_4:54341973-54341992 | None:intergenic | 35.0% | |
| ATGAATAGGAATTGTCCACA+CGG | - | chr8_4:54341989-54342008 | Msa1334040:intron | 35.0% | |
| !! | TTTTGTGTCATTGCTCATTG+TGG | - | chr8_4:54342047-54342066 | Msa1334040:intron | 35.0% |
| ATTACCGTTTCTTCAGACAA+AGG | - | chr8_4:54342116-54342135 | Msa1334040:intron | 35.0% | |
| AAGACCTTTGTCTGAAGAAA+CGG | + | chr8_4:54342123-54342142 | None:intergenic | 35.0% | |
| TTGTTGTCTGTGTATTGTGA+TGG | - | chr8_4:54342218-54342237 | Msa1334040:intron | 35.0% | |
| CTTGAAATTGCAGACAATTG+TGG | + | chr8_4:54342297-54342316 | None:intergenic | 35.0% | |
| CACAATTGTCTGCAATTTCA+AGG | - | chr8_4:54342295-54342314 | Msa1334040:intron | 35.0% | |
| !! | TGAGATTCTGGTAATGGTAA+TGG | - | chr8_4:54342442-54342461 | Msa1334040:intron | 35.0% |
| CCTATAGTAGCAAATAGGTT+TGG | + | chr8_4:54342470-54342489 | None:intergenic | 35.0% | |
| ! | CCAAACCTATTTGCTACTAT+AGG | - | chr8_4:54342467-54342486 | Msa1334040:intron | 35.0% |
| GAATCCTCTGAATTATACTC+AGG | - | chr8_4:54342595-54342614 | Msa1334040:intron | 35.0% | |
| CTAACCTGAGTATAATTCAG+AGG | + | chr8_4:54342602-54342621 | None:intergenic | 35.0% | |
| AATATGAACGTCACTCTAAC+TGG | - | chr8_4:54342833-54342852 | Msa1334040:intron | 35.0% | |
| TCTGACTGAATATAATGTGG+TGG | - | chr8_4:54342874-54342893 | Msa1334040:intron | 35.0% | |
| ! | AAAACTGTTCAGCTTTTGTG+AGG | - | chr8_4:54342989-54343008 | Msa1334040:intron | 35.0% |
| !!! | GTATTTTCAGGTTTCTGTCT+TGG | - | chr8_4:54343204-54343223 | Msa1334040:intron | 35.0% |
| ! | TGATGACATTCTGAAAAACG+TGG | - | chr8_4:54343228-54343247 | Msa1334040:intron | 35.0% |
| ! | CGTTGGTAGAAATTGTACAA+CGG | + | chr8_4:54343293-54343312 | None:intergenic | 35.0% |
| CGTTGTACAATTTCTACCAA+CGG | - | chr8_4:54343291-54343310 | Msa1334040:intron | 35.0% | |
| !! | TAATAGATGAAAGTACCTCG+GGG | + | chr8_4:54343333-54343352 | None:intergenic | 35.0% |
| TATTGTCAAGTTTCGACGTT+TGG | - | chr8_4:54343411-54343430 | Msa1334040:intron | 35.0% | |
| TTACATCACACCATTGAAAC+AGG | + | chr8_4:54343506-54343525 | None:intergenic | 35.0% | |
| CATGTAGATTGTTGAAAGAG+AGG | - | chr8_4:54343535-54343554 | Msa1334040:intron | 35.0% | |
| TGGATTCGTATGAGATTGAA+GGG | - | chr8_4:54343585-54343604 | Msa1334040:CDS | 35.0% | |
| ! | TATAAAATGCTATCTGGGAC+CGG | - | chr8_4:54343858-54343877 | Msa1334040:intron | 35.0% |
| ! | GCTTAATTTGATCCCTGTTA+TGG | + | chr8_4:54343892-54343911 | None:intergenic | 35.0% |
| TATTTCCAAATAGCCAGGTA+GGG | + | chr8_4:54343958-54343977 | None:intergenic | 35.0% | |
| TTATTTCCAAATAGCCAGGT+AGG | + | chr8_4:54343959-54343978 | None:intergenic | 35.0% | |
| GGAATTATTTCCAAATAGCC+AGG | + | chr8_4:54343963-54343982 | None:intergenic | 35.0% | |
| GTTACAAAGTCAATAGGAAG+CGG | + | chr8_4:54344010-54344029 | None:intergenic | 35.0% | |
| !! | AAACTGCTCTAGAATGTTCT+TGG | + | chr8_4:54344090-54344109 | None:intergenic | 35.0% |
| !!! | CATGATTTGTTGTGACCTTT+TGG | - | chr8_4:54344221-54344240 | Msa1334040:intron | 35.0% |
| ! | CTTAGTTATTTCGTCGTAGT+TGG | - | chr8_4:54344342-54344361 | Msa1334040:intron | 35.0% |
| ! | ATGTTTTATACCAACGTACC+CGG | - | chr8_4:54344509-54344528 | Msa1334040:intron | 35.0% |
| TATGAACTCTGAATGGAATG+CGG | + | chr8_4:54344709-54344728 | None:intergenic | 35.0% | |
| CTCACATATAAGCTGTAAAG+TGG | - | chr8_4:54344733-54344752 | Msa1334040:CDS | 35.0% | |
| CAAGCCCTCTCATAATTAAA+TGG | + | chr8_4:54345090-54345109 | None:intergenic | 35.0% | |
| GAAGAAAAGAAACACATCAC+TGG | - | chr8_4:54345144-54345163 | Msa1334040:intron | 35.0% | |
| TAAACACCTCTTATACTGCA+GGG | - | chr8_4:54345167-54345186 | Msa1334040:intron | 35.0% | |
| GGACATACCATAACATCAAA+AGG | - | chr8_4:54345334-54345353 | Msa1334040:intron | 35.0% | |
| AAAGAATCAGGAACAAGGTT+GGG | + | chr8_4:54345375-54345394 | None:intergenic | 35.0% | |
| AAAAGAATCAGGAACAAGGT+TGG | + | chr8_4:54345376-54345395 | None:intergenic | 35.0% | |
| ACACAAAAGAATCAGGAACA+AGG | + | chr8_4:54345380-54345399 | None:intergenic | 35.0% | |
| TTGAGAACTTTGACGTTTGA+AGG | - | chr8_4:54345499-54345518 | Msa1334040:intron | 35.0% | |
| ACTGATGCAATTATACAGGA+TGG | + | chr8_4:54345773-54345792 | None:intergenic | 35.0% | |
| ! | AGACTAGTCAGTGAAATCAT+AGG | + | chr8_4:54345815-54345834 | None:intergenic | 35.0% |
| CGATATTGAGATATATCGGT+TGG | - | chr8_4:54345963-54345982 | Msa1334040:intron | 35.0% | |
| ! | CTCGAACTGTTATTTACTTG+TGG | - | chr8_4:54346194-54346213 | Msa1334040:five_prime_UTR | 35.0% |
| GAGTGAGAAAGAACGAACAA+GGG | + | chr8_4:54341262-54341281 | None:intergenic | 40.0% | |
| AGAGTGAGAAAGAACGAACA+AGG | + | chr8_4:54341263-54341282 | None:intergenic | 40.0% | |
| CTGAAAATTCACGTGGTTTG+TGG | - | chr8_4:54341627-54341646 | Msa1334040:CDS | 40.0% | |
| CACACATTCAATCAGAAGTG+TGG | - | chr8_4:54341935-54341954 | Msa1334040:intron | 40.0% | |
| TCTTCAGACAAAGGTCTTTG+TGG | - | chr8_4:54342125-54342144 | Msa1334040:intron | 40.0% | |
| ! | ACCAGAATTCAACTTGCTCA+AGG | + | chr8_4:54342186-54342205 | None:intergenic | 40.0% |
| AAGTGATGCAATTGTGGATG+TGG | + | chr8_4:54342266-54342285 | None:intergenic | 40.0% | |
| CAGGTCCTATAGTAGCAAAT+AGG | + | chr8_4:54342475-54342494 | None:intergenic | 40.0% | |
| GTATGTCATATTGGGAGAGA+AGG | - | chr8_4:54342508-54342527 | Msa1334040:intron | 40.0% | |
| !! | GGTTTTAATGTCACTGGGTT+GGG | + | chr8_4:54342922-54342941 | None:intergenic | 40.0% |
| !! | AGGTTTTAATGTCACTGGGT+TGG | + | chr8_4:54342923-54342942 | None:intergenic | 40.0% |
| ! | TGCTTTCTTTGGCAGCTTTT+GGG | + | chr8_4:54343041-54343060 | None:intergenic | 40.0% |
| ! | ATGCTTTCTTTGGCAGCTTT+TGG | + | chr8_4:54343042-54343061 | None:intergenic | 40.0% |
| TTGGGGGAAAATGCTTTCTT+TGG | + | chr8_4:54343052-54343071 | None:intergenic | 40.0% | |
| GATAGTATAGTTGACACCGT+TGG | + | chr8_4:54343310-54343329 | None:intergenic | 40.0% | |
| !! | AATAGATGAAAGTACCTCGG+GGG | + | chr8_4:54343332-54343351 | None:intergenic | 40.0% |
| !! | GTGCTTTTTGCCTGTTTCAA+TGG | - | chr8_4:54343493-54343512 | Msa1334040:intron | 40.0% |
| CTGGATTCGTATGAGATTGA+AGG | - | chr8_4:54343584-54343603 | Msa1334040:CDS | 40.0% | |
| GGATTCGTATGAGATTGAAG+GGG | - | chr8_4:54343586-54343605 | Msa1334040:CDS | 40.0% | |
| GATTCGTATGAGATTGAAGG+GGG | - | chr8_4:54343587-54343606 | Msa1334040:CDS | 40.0% | |
| TACGCAAGAAAACTGGAACT+CGG | + | chr8_4:54343645-54343664 | None:intergenic | 40.0% | |
| TTGTACGTACGCAAGAAAAC+TGG | + | chr8_4:54343652-54343671 | None:intergenic | 40.0% | |
| TTAGTCTAATTGCCGTACGT+AGG | - | chr8_4:54343737-54343756 | Msa1334040:intron | 40.0% | |
| !! | TGATTCTGAAGTCCTACGTA+CGG | + | chr8_4:54343752-54343771 | None:intergenic | 40.0% |
| ! | ATAAAATGCTATCTGGGACC+GGG | - | chr8_4:54343859-54343878 | Msa1334040:intron | 40.0% |
| ATTTCCAAATAGCCAGGTAG+GGG | + | chr8_4:54343957-54343976 | None:intergenic | 40.0% | |
| ! | ACTTTCTCTCAGAGCATTCA+AGG | - | chr8_4:54344150-54344169 | Msa1334040:intron | 40.0% |
| TTCAAGGACATGTTACCTAG+TGG | - | chr8_4:54344166-54344185 | Msa1334040:intron | 40.0% | |
| !! | GTTGTGACCTTTTGGTTACT+AGG | - | chr8_4:54344229-54344248 | Msa1334040:intron | 40.0% |
| AGAGCTTCCTAGTAACCAAA+AGG | + | chr8_4:54344239-54344258 | None:intergenic | 40.0% | |
| TTGGTGCAGCAAAAACGTAA+GGG | - | chr8_4:54344361-54344380 | Msa1334040:intron | 40.0% | |
| AAATTTGCCGTATTACGCAC+CGG | - | chr8_4:54344546-54344565 | Msa1334040:intron | 40.0% | |
| TAGCTATGATGCATAGGTAC+GGG | + | chr8_4:54344598-54344617 | None:intergenic | 40.0% | |
| CTAGCTATGATGCATAGGTA+CGG | + | chr8_4:54344599-54344618 | None:intergenic | 40.0% | |
| TATGCATCATAGCTAGGAAG+CGG | - | chr8_4:54344603-54344622 | Msa1334040:intron | 40.0% | |
| CTTCTCTTGATGCTTTCTCT+CGG | + | chr8_4:54344648-54344667 | None:intergenic | 40.0% | |
| !! | GAGAGAAAGCATCAAGAGAA+GGG | - | chr8_4:54344647-54344666 | Msa1334040:CDS | 40.0% |
| AGTTAGAGACGGGAAATTAG+AGG | - | chr8_4:54344847-54344866 | Msa1334040:intron | 40.0% | |
| !!! | AGGGGTTTTGTTCTGTAGTT+TGG | - | chr8_4:54344896-54344915 | Msa1334040:intron | 40.0% |
| !!! | GGGGTTTTGTTCTGTAGTTT+GGG | - | chr8_4:54344897-54344916 | Msa1334040:intron | 40.0% |
| GTAAACACCTCTTATACTGC+AGG | - | chr8_4:54345166-54345185 | Msa1334040:intron | 40.0% | |
| ! | CTATGTAGTTGGGAGTGTAA+TGG | + | chr8_4:54345306-54345325 | None:intergenic | 40.0% |
| ! | AGATGGGCCTTTTGATGTTA+TGG | + | chr8_4:54345344-54345363 | None:intergenic | 40.0% |
| GTCTGACCCTCACTTATAAT+AGG | - | chr8_4:54345678-54345697 | Msa1334040:CDS | 40.0% | |
| CTTGGTTGACCAGATATTTC+TGG | - | chr8_4:54346076-54346095 | Msa1334040:exon | 40.0% | |
| GAATCTCAAATCGATGGCGA+TGG | - | chr8_4:54341144-54341163 | Msa1334040:three_prime_UTR | 45.0% | |
| !! | AGTGGTGTTGATTGGTGGTT+GGG | + | chr8_4:54341218-54341237 | None:intergenic | 45.0% |
| ! | AACTACGTGCTGTTCAAACC+AGG | - | chr8_4:54341603-54341622 | Msa1334040:CDS | 45.0% |
| ! | ACTACGTGCTGTTCAAACCA+GGG | - | chr8_4:54341604-54341623 | Msa1334040:CDS | 45.0% |
| ! | TGGTTTGTGGCAGCCATTTA+CGG | - | chr8_4:54341640-54341659 | Msa1334040:CDS | 45.0% |
| GTCAGTGCTTCATTGGTGAA+GGG | + | chr8_4:54341804-54341823 | None:intergenic | 45.0% | |
| TGTCAGTGCTTCATTGGTGA+AGG | + | chr8_4:54341805-54341824 | None:intergenic | 45.0% | |
| TGTGTGTGTCAGTGCTTCAT+TGG | + | chr8_4:54341811-54341830 | None:intergenic | 45.0% | |
| ACAAATTAGTACGCACCGTG+TGG | + | chr8_4:54342007-54342026 | None:intergenic | 45.0% | |
| TCAGACAAAGGTCTTTGTGG+TGG | - | chr8_4:54342128-54342147 | Msa1334040:intron | 45.0% | |
| CACGTCTGTCAAGATAAGCA+GGG | - | chr8_4:54342160-54342179 | Msa1334040:intron | 45.0% | |
| ! | GCCTTGAGCAAGTTGAATTC+TGG | - | chr8_4:54342182-54342201 | Msa1334040:intron | 45.0% |
| CATATTGGGAGAGAAGGCTA+AGG | - | chr8_4:54342514-54342533 | Msa1334040:intron | 45.0% | |
| ATGTGGTGGTTGCTTAATGC+TGG | - | chr8_4:54342888-54342907 | Msa1334040:intron | 45.0% | |
| TGGTTGCTTAATGCTGGCAA+GGG | - | chr8_4:54342894-54342913 | Msa1334040:intron | 45.0% | |
| TATTTCATGTCAGGGGACCT+GGG | + | chr8_4:54343393-54343412 | None:intergenic | 45.0% | |
| ATATTTCATGTCAGGGGACC+TGG | + | chr8_4:54343394-54343413 | None:intergenic | 45.0% | |
| ! | TAAAATGCTATCTGGGACCG+GGG | - | chr8_4:54343860-54343879 | Msa1334040:intron | 45.0% |
| GTTGTGTGGAGGGATAGATA+TGG | + | chr8_4:54343984-54344003 | None:intergenic | 45.0% | |
| ATAGGAAGCGGAAAGTTGTG+TGG | + | chr8_4:54343998-54344017 | None:intergenic | 45.0% | |
| !! | TACTAGGAAGCTCTGAAGCA+TGG | - | chr8_4:54344245-54344264 | Msa1334040:intron | 45.0% |
| !! | ACTAGGAAGCTCTGAAGCAT+GGG | - | chr8_4:54344246-54344265 | Msa1334040:intron | 45.0% |
| AAGCATGGGTACTCCAAACA+TGG | - | chr8_4:54344260-54344279 | Msa1334040:intron | 45.0% | |
| ! | CTCCAAACATGGAGAAGTAC+CGG | - | chr8_4:54344271-54344290 | Msa1334040:intron | 45.0% |
| !! | TCCAAACATGGAGAAGTACC+GGG | - | chr8_4:54344272-54344291 | Msa1334040:intron | 45.0% |
| GTTGGTGCAGCAAAAACGTA+AGG | - | chr8_4:54344360-54344379 | Msa1334040:intron | 45.0% | |
| ATGATGCATAGGTACGGGTA+CGG | + | chr8_4:54344593-54344612 | None:intergenic | 45.0% | |
| CGTACCTATGCATCATAGCT+AGG | - | chr8_4:54344597-54344616 | Msa1334040:intron | 45.0% | |
| GCTTCCTAGCTATGATGCAT+AGG | + | chr8_4:54344604-54344623 | None:intergenic | 45.0% | |
| !! | CGAGAGAAAGCATCAAGAGA+AGG | - | chr8_4:54344646-54344665 | Msa1334040:CDS | 45.0% |
| ! | TTGAGGCATTTGAGAGACCT+GGG | + | chr8_4:54344931-54344950 | None:intergenic | 45.0% |
| TCACAACCCTGCAGTATAAG+AGG | + | chr8_4:54345176-54345195 | None:intergenic | 45.0% | |
| CTTGACAGGTCACTACTTTG+TGG | + | chr8_4:54345216-54345235 | None:intergenic | 45.0% | |
| AGTGGTGTACTTGGACTCTT+GGG | + | chr8_4:54345276-54345295 | None:intergenic | 45.0% | |
| ! | TGTAGTTGGGAGTGTAATGG+AGG | + | chr8_4:54345303-54345322 | None:intergenic | 45.0% |
| !!! | TTGTTTATATAAATTTTATA+AGG | - | chr8_4:54345054-54345073 | Msa1334040:CDS | 5.0% |
| TCGCTGAGAGAGAGAAAGAG+AGG | + | chr8_4:54341115-54341134 | None:intergenic | 50.0% | |
| !! | GAGTGGTGTTGATTGGTGGT+TGG | + | chr8_4:54341219-54341238 | None:intergenic | 50.0% |
| !! | GATCGGAGAGTGGTGTTGAT+TGG | + | chr8_4:54341226-54341245 | None:intergenic | 50.0% |
| AGGGAGAGATGAGAGGAGAT+CGG | + | chr8_4:54341243-54341262 | None:intergenic | 50.0% | |
| ACGAACAAGGGAGAGATGAG+AGG | + | chr8_4:54341250-54341269 | None:intergenic | 50.0% | |
| ACCAGGGCTGAAAATTCACG+TGG | - | chr8_4:54341620-54341639 | Msa1334040:CDS | 50.0% | |
| ! | ACCACGTGAATTTTCAGCCC+TGG | + | chr8_4:54341624-54341643 | None:intergenic | 50.0% |
| CAGCCATTTACGGCTCTTCT+CGG | - | chr8_4:54341650-54341669 | Msa1334040:intron | 50.0% | |
| TCACCGAGAAGAGCCGTAAA+TGG | + | chr8_4:54341656-54341675 | None:intergenic | 50.0% | |
| CCTGCTTATCTTGACAGACG+TGG | + | chr8_4:54342162-54342181 | None:intergenic | 50.0% | |
| CCACGTCTGTCAAGATAAGC+AGG | - | chr8_4:54342159-54342178 | Msa1334040:intron | 50.0% | |
| GTGGTTGCTTAATGCTGGCA+AGG | - | chr8_4:54342893-54342912 | Msa1334040:intron | 50.0% | |
| ACGTGGAGTATGATGCACTG+AGG | - | chr8_4:54343245-54343264 | Msa1334040:intron | 50.0% | |
| GTCAACTATACTATCCCCCG+AGG | - | chr8_4:54343315-54343334 | Msa1334040:intron | 50.0% | |
| GTTGAAAGAGAGGCTGAAGC+TGG | - | chr8_4:54343545-54343564 | Msa1334040:intron | 50.0% | |
| ACCGGGGTGAAATCCATAAC+AGG | - | chr8_4:54343876-54343895 | Msa1334040:intron | 50.0% | |
| CCCTGTTATGGATTTCACCC+CGG | + | chr8_4:54343880-54343899 | None:intergenic | 50.0% | |
| CCGGGGTGAAATCCATAACA+GGG | - | chr8_4:54343877-54343896 | Msa1334040:intron | 50.0% | |
| GAAGCGGAAAGTTGTGTGGA+GGG | + | chr8_4:54343994-54344013 | None:intergenic | 50.0% | |
| ACCCGGTACTTCTCCATGTT+TGG | + | chr8_4:54344276-54344295 | None:intergenic | 50.0% | |
| AAATGAAGGTCCGGGTACGT+TGG | + | chr8_4:54344522-54344541 | None:intergenic | 50.0% | |
| !! | ATGGGTACCGGTGCGTAATA+CGG | + | chr8_4:54344556-54344575 | None:intergenic | 50.0% |
| CTAGGAAGCGGTCAAAGCAT+AGG | - | chr8_4:54344615-54344634 | Msa1334040:intron | 50.0% | |
| GAAGCGGTCAAAGCATAGGA+AGG | - | chr8_4:54344619-54344638 | Msa1334040:intron | 50.0% | |
| CATTTGAGAGACCTGGGATC+TGG | + | chr8_4:54344925-54344944 | None:intergenic | 50.0% | |
| ! | CTTGAGGCATTTGAGAGACC+TGG | + | chr8_4:54344932-54344951 | None:intergenic | 50.0% |
| TGTACTTGGACTCTTGGGGA+AGG | + | chr8_4:54345271-54345290 | None:intergenic | 50.0% | |
| GTGGTGTACTTGGACTCTTG+GGG | + | chr8_4:54345275-54345294 | None:intergenic | 50.0% | |
| CAGTGGTGTACTTGGACTCT+TGG | + | chr8_4:54345277-54345296 | None:intergenic | 50.0% | |
| ! | AGTTGGGAGTGTAATGGAGG+AGG | + | chr8_4:54345300-54345319 | None:intergenic | 50.0% |
| AGGTTGGGCGTAGACAAGAT+GGG | + | chr8_4:54345360-54345379 | None:intergenic | 50.0% | |
| AAGGTTGGGCGTAGACAAGA+TGG | + | chr8_4:54345361-54345380 | None:intergenic | 50.0% | |
| GGTCATGTTCAATGCGGTGT+TGG | - | chr8_4:54345577-54345596 | Msa1334040:CDS | 50.0% | |
| ATTCCTGCTAGAGCTGTCCA+TGG | + | chr8_4:54345639-54345658 | None:intergenic | 50.0% | |
| ! | ACAGCTCTAGCAGGAATGCT+GGG | - | chr8_4:54345642-54345661 | Msa1334040:CDS | 50.0% |
| TTTCAAGGCGAAACTCGCCT+TGG | - | chr8_4:54346047-54346066 | Msa1334040:CDS | 50.0% | |
| TTCAAGGCGAAACTCGCCTT+GGG | - | chr8_4:54346048-54346067 | Msa1334040:CDS | 50.0% | |
| AACTCGCCTTGGGGATTTCT+TGG | - | chr8_4:54346058-54346077 | Msa1334040:CDS | 50.0% | |
| GGTCAACCAAGAAATCCCCA+AGG | + | chr8_4:54346067-54346086 | None:intergenic | 50.0% | |
| CTAAACGCTTCCCTTCGCGT+CGG | + | chr8_4:54341180-54341199 | None:intergenic | 55.0% | |
| GGTGGTTGGGAAGACATGAG+AGG | + | chr8_4:54341205-54341224 | None:intergenic | 55.0% | |
| !! | CGGAGAGTGGTGTTGATTGG+TGG | + | chr8_4:54341223-54341242 | None:intergenic | 55.0% |
| GATGAGAGGAGATCGGAGAG+TGG | + | chr8_4:54341236-54341255 | None:intergenic | 55.0% | |
| GCGTTCGATACCGACATGTG+TGG | + | chr8_4:54341886-54341905 | None:intergenic | 55.0% | |
| GTATCGAACGCTGACGAGTG+AGG | - | chr8_4:54341895-54341914 | Msa1334040:intron | 55.0% | |
| GAAAGAGAGGCTGAAGCTGG+AGG | - | chr8_4:54343548-54343567 | Msa1334040:intron | 55.0% | |
| GCTGAAGCTGGAGGAAGTCT+CGG | - | chr8_4:54343557-54343576 | Msa1334040:intron | 55.0% | |
| TGGAGGAAGTCTCGGTGAAC+TGG | - | chr8_4:54343565-54343584 | Msa1334040:intron | 55.0% | |
| CAAATAGCCAGGTAGGGGCT+AGG | + | chr8_4:54343952-54343971 | None:intergenic | 55.0% | |
| CTAGCCCCTACCTGGCTATT+TGG | - | chr8_4:54343950-54343969 | Msa1334040:CDS | 55.0% | |
| GGAAGCGGAAAGTTGTGTGG+AGG | + | chr8_4:54343995-54344014 | None:intergenic | 55.0% | |
| !! | AGAAGTACCGGGTACGCGTA+TGG | - | chr8_4:54344283-54344302 | Msa1334040:intron | 55.0% |
| ATAGGTACGGGTACGGTACC+CGG | + | chr8_4:54344586-54344605 | None:intergenic | 55.0% | |
| TAGTTTGGGAGCCAGATCCC+AGG | - | chr8_4:54344911-54344930 | Msa1334040:intron | 55.0% | |
| !! | GAAGGACGGGGTTTTTGGGA+AGG | + | chr8_4:54345253-54345272 | None:intergenic | 55.0% |
| ! | TGGGGAAGGACGGGGTTTTT+GGG | + | chr8_4:54345257-54345276 | None:intergenic | 55.0% |
| ! | TTGGGGAAGGACGGGGTTTT+TGG | + | chr8_4:54345258-54345277 | None:intergenic | 55.0% |
| TTGGACTCTTGGGGAAGGAC+GGG | + | chr8_4:54345266-54345285 | None:intergenic | 55.0% | |
| CTTGGACTCTTGGGGAAGGA+CGG | + | chr8_4:54345267-54345286 | None:intergenic | 55.0% | |
| ! | GAGTGTAATGGAGGAGGCAG+TGG | + | chr8_4:54345294-54345313 | None:intergenic | 55.0% |
| GAGAATGCCTGCAGTGAGCA+AGG | - | chr8_4:54345599-54345618 | Msa1334040:CDS | 55.0% | |
| AGGAGCAAGGATGTCTGCCA+TGG | - | chr8_4:54345619-54345638 | Msa1334040:CDS | 55.0% | |
| ! | GACAGCTCTAGCAGGAATGC+TGG | - | chr8_4:54345641-54345660 | Msa1334040:CDS | 55.0% |
| ! | CAGCTCTAGCAGGAATGCTG+GGG | - | chr8_4:54345643-54345662 | Msa1334040:CDS | 55.0% |
| !! | TCTGGAGCATCAGCACTGAC+AGG | - | chr8_4:54345898-54345917 | Msa1334040:intron | 55.0% |
| TCAAGGCGAAACTCGCCTTG+GGG | - | chr8_4:54346049-54346068 | Msa1334040:CDS | 55.0% | |
| CCAGGTAGGGGCTAGGTTAG+AGG | + | chr8_4:54343945-54343964 | None:intergenic | 60.0% | |
| CCTCTAACCTAGCCCCTACC+TGG | - | chr8_4:54343942-54343961 | Msa1334040:CDS | 60.0% | |
| ACGAGTGCCATACGCGTACC+CGG | + | chr8_4:54344293-54344312 | None:intergenic | 60.0% | |
| ACCGGTACCCATACCCGTAC+CGG | - | chr8_4:54344564-54344583 | Msa1334040:intron | 60.0% | |
| ACGGTACCCGGTACGGGTAT+GGG | + | chr8_4:54344574-54344593 | None:intergenic | 60.0% | |
| TACGGTACCCGGTACGGGTA+TGG | + | chr8_4:54344575-54344594 | None:intergenic | 60.0% | |
| TACGGGTACGGTACCCGGTA+CGG | + | chr8_4:54344581-54344600 | None:intergenic | 60.0% | |
| TGGACTCTTGGGGAAGGACG+GGG | + | chr8_4:54345265-54345284 | None:intergenic | 60.0% | |
| GGAGGAGGCAGTGGTGTACT+TGG | + | chr8_4:54345285-54345304 | None:intergenic | 60.0% | |
| CCTTGCTCCTTGCTCACTGC+AGG | + | chr8_4:54345609-54345628 | None:intergenic | 60.0% | |
| CCTGCAGTGAGCAAGGAGCA+AGG | - | chr8_4:54345606-54345625 | Msa1334040:CDS | 60.0% | |
| ! | CTGCCATGGACAGCTCTAGC+AGG | - | chr8_4:54345633-54345652 | Msa1334040:CDS | 60.0% |
| CTGCTGCACTCCGACGCGAA+GGG | - | chr8_4:54341167-54341186 | Msa1334040:three_prime_UTR | 65.0% | |
| CCCGGTACGGGTATGGGTAC+CGG | + | chr8_4:54344568-54344587 | None:intergenic | 65.0% | |
| CCGGTACCCATACCCGTACC+GGG | - | chr8_4:54344565-54344584 | Msa1334040:intron | 65.0% | |
| ACGGGTACGGTACCCGGTAC+GGG | + | chr8_4:54344580-54344599 | None:intergenic | 65.0% | |
| GCTGCTGCACTCCGACGCGA+AGG | - | chr8_4:54341166-54341185 | Msa1334040:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 54340990 | 54346251 | 54340990 | ID=Msa1334040;Name=Msa1334040 |
| chr8_4 | mRNA | 54340990 | 54346251 | 54340990 | ID=Msa1334040-mRNA-1;Parent=Msa1334040;Name=Msa1334040-mRNA-1;_AED=0.11;_eAED=0.11;_QI=167|0.87|0.88|1|1|1|9|327|356 |
| chr8_4 | exon | 54340990 | 54341386 | 54340990 | ID=Msa1334040-mRNA-1:exon:16901;Parent=Msa1334040-mRNA-1 |
| chr8_4 | exon | 54341542 | 54341663 | 54341542 | ID=Msa1334040-mRNA-1:exon:16900;Parent=Msa1334040-mRNA-1 |
| chr8_4 | exon | 54343580 | 54343699 | 54343580 | ID=Msa1334040-mRNA-1:exon:16899;Parent=Msa1334040-mRNA-1 |
| chr8_4 | exon | 54343905 | 54344027 | 54343905 | ID=Msa1334040-mRNA-1:exon:16898;Parent=Msa1334040-mRNA-1 |
| chr8_4 | exon | 54344625 | 54344839 | 54344625 | ID=Msa1334040-mRNA-1:exon:16897;Parent=Msa1334040-mRNA-1 |
| chr8_4 | exon | 54345038 | 54345151 | 54345038 | ID=Msa1334040-mRNA-1:exon:16896;Parent=Msa1334040-mRNA-1 |
| chr8_4 | exon | 54345558 | 54345710 | 54345558 | ID=Msa1334040-mRNA-1:exon:16895;Parent=Msa1334040-mRNA-1 |
| chr8_4 | exon | 54345847 | 54345893 | 54345847 | ID=Msa1334040-mRNA-1:exon:16894;Parent=Msa1334040-mRNA-1 |
| chr8_4 | exon | 54345978 | 54346251 | 54345978 | ID=Msa1334040-mRNA-1:exon:16893;Parent=Msa1334040-mRNA-1 |
| chr8_4 | five_prime_UTR | 54346085 | 54346251 | 54346085 | ID=Msa1334040-mRNA-1:five_prime_utr;Parent=Msa1334040-mRNA-1 |
| chr8_4 | CDS | 54345978 | 54346084 | 54345978 | ID=Msa1334040-mRNA-1:cds;Parent=Msa1334040-mRNA-1 |
| chr8_4 | CDS | 54345847 | 54345893 | 54345847 | ID=Msa1334040-mRNA-1:cds;Parent=Msa1334040-mRNA-1 |
| chr8_4 | CDS | 54345558 | 54345710 | 54345558 | ID=Msa1334040-mRNA-1:cds;Parent=Msa1334040-mRNA-1 |
| chr8_4 | CDS | 54345038 | 54345151 | 54345038 | ID=Msa1334040-mRNA-1:cds;Parent=Msa1334040-mRNA-1 |
| chr8_4 | CDS | 54344625 | 54344839 | 54344625 | ID=Msa1334040-mRNA-1:cds;Parent=Msa1334040-mRNA-1 |
| chr8_4 | CDS | 54343905 | 54344027 | 54343905 | ID=Msa1334040-mRNA-1:cds;Parent=Msa1334040-mRNA-1 |
| chr8_4 | CDS | 54343580 | 54343699 | 54343580 | ID=Msa1334040-mRNA-1:cds;Parent=Msa1334040-mRNA-1 |
| chr8_4 | CDS | 54341542 | 54341663 | 54341542 | ID=Msa1334040-mRNA-1:cds;Parent=Msa1334040-mRNA-1 |
| chr8_4 | CDS | 54341317 | 54341386 | 54341317 | ID=Msa1334040-mRNA-1:cds;Parent=Msa1334040-mRNA-1 |
| chr8_4 | three_prime_UTR | 54340990 | 54341316 | 54340990 | ID=Msa1334040-mRNA-1:three_prime_utr;Parent=Msa1334040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
