AlfalfaGEDB | Msa1325470

M. sativa cultivar zhongmu-4 / Msa1325470

KEGG: K10956
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0022804 GO:0022857 GO:0022884 GO:0031204 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:1904680
PFAM: PF10559.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1325470	XP_003628446.1	100.000	476	0	0	1	476	1	476	0.0	964

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1325470	sp\|Q54XK2\|SC61A_DICDI	73.276	464	123	1	4	467	2	464	0.0	723

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1325470	A0A2K3N9A6	100.000	476	0	0	1	476	1	476	0.0	964

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0113920	Msa1325470	0.830334	3.114608e-55	-8.615850e-47
Msa0373550	Msa1325470	0.803125	4.046091e-49	-8.615850e-47
Msa0463970	Msa1325470	0.802550	5.318542e-49	-8.615850e-47
Msa0468660	Msa1325470	0.819311	1.241605e-52	-8.615850e-47
Msa0474570	Msa1325470	0.851145	1.073992e-60	-8.615850e-47
Msa0616580	Msa1325470	0.823199	1.575376e-53	-8.615850e-47
Msa0630500	Msa1325470	0.814282	1.668148e-51	-8.615850e-47
Msa0656320	Msa1325470	0.854718	1.021217e-61	-8.615850e-47
Msa0699910	Msa1325470	0.813743	2.193474e-51	-8.615850e-47
Msa0967880	Msa1325470	0.808848	2.530887e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1325470	MtrunA17_Chr8g0359731	100.000	476	0	0	1	476	1	476	0.0	964
Msa1325470	MtrunA17_Chr8g0372551	99.580	476	2	0	1	476	1	476	0.0	962

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1325470	AT2G34250.2	93.697	476	29	1	1	476	1	475	910
Msa1325470	AT2G34250.3	93.697	476	29	1	1	476	1	475	910
Msa1325470	AT2G34250.1	93.697	476	29	1	1	476	1	475	910
Msa1325470	AT1G29310.1	93.487	476	30	1	1	476	1	475	910
Msa1325470	AT1G29310.2	93.487	476	30	1	1	476	1	475	910
Msa1325470	AT1G78720.2	90.947	475	42	1	1	475	1	474	889
Msa1325470	AT1G78720.1	90.947	475	42	1	1	475	1	474	889
Msa1325470	AT1G78720.3	90.526	475	42	2	1	475	1	472	879

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Find 174 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGGATTGAAGTCTC+TGG	0.456476	8_4:-37673529	Msa1325470:CDS
AAAAGAGCTGGAGGATGATA+AGG	0.461663	8_4:+37674558	None:intergenic
AAAATTCTCTATTACCTAGA+GGG	0.576749	8_4:+37673772	None:intergenic
AAACTTCATTGTGAATCTGT+TGG	0.548669	8_4:-37673869	Msa1325470:CDS
AAAGAAATATTCATCATACA+TGG	0.568310	8_4:+37672491	None:intergenic
AAAGAATGCCCGTGGACAGC+AGG	0.432758	8_4:-37674092	Msa1325470:CDS
AAAGGCTATGGTTTGGGATC+TGG	0.365013	8_4:-37674494	Msa1325470:CDS
AAATGGAAGGAATCTGAGTA+TGG	0.491085	8_4:-37673844	Msa1325470:CDS
AAATGGCACTTTCCTGTCCG+CGG	0.628213	8_4:+37675066	None:intergenic
AAATGGTAATGCCTGGTCAT+CGG	0.505999	8_4:-37673021	Msa1325470:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACCCTTTCTTCTATTTGAAT+CGG	-	chr8_4:37672014-37672033	Msa1325470:three_prime_UTR	30.0%
TCCGATTCAAATAGAAGAAA+GGG	+	chr8_4:37672018-37672037	None:intergenic	30.0%
TTCCGATTCAAATAGAAGAA+AGG	+	chr8_4:37672019-37672038	None:intergenic	30.0%
AATTATGTCCGAATGTTTCT+TGG	-	chr8_4:37672621-37672640	Msa1325470:three_prime_UTR	30.0%
CAGGTTAAATTACTGTATTC+TGG	-	chr8_4:37672769-37672788	Msa1325470:three_prime_UTR	30.0%
ATTACTGTATTCTGGTAAGA+TGG	-	chr8_4:37672777-37672796	Msa1325470:three_prime_UTR	30.0%
TTACTGTATTCTGGTAAGAT+GGG	-	chr8_4:37672778-37672797	Msa1325470:three_prime_UTR	30.0%
TATATGACCTTCTCTCTAAA+TGG	+	chr8_4:37672883-37672902	None:intergenic	30.0%
ATAAATTACTCTTTGCTCTC+AGG	-	chr8_4:37673238-37673257	Msa1325470:intron	30.0%
ATACATTCCAGAAAGAACAT+AGG	+	chr8_4:37673316-37673335	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	37672003	37675948	37672003	ID=Msa1325470;Name=Msa1325470
chr8_4	mRNA	37672003	37675948	37672003	ID=Msa1325470-mRNA-1;Parent=Msa1325470;Name=Msa1325470-mRNA-1;_AED=0.09;_eAED=0.09;_QI=136\|1\|1\|1\|0.71\|0.5\|8\|579\|476
chr8_4	exon	37672003	37672240	37672003	ID=Msa1325470-mRNA-1:exon:11515;Parent=Msa1325470-mRNA-1
chr8_4	exon	37672470	37673050	37672470	ID=Msa1325470-mRNA-1:exon:11514;Parent=Msa1325470-mRNA-1
chr8_4	exon	37673495	37673630	37673495	ID=Msa1325470-mRNA-1:exon:11513;Parent=Msa1325470-mRNA-1
chr8_4	exon	37673787	37673914	37673787	ID=Msa1325470-mRNA-1:exon:11512;Parent=Msa1325470-mRNA-1
chr8_4	exon	37674003	37674357	37674003	ID=Msa1325470-mRNA-1:exon:11511;Parent=Msa1325470-mRNA-1
chr8_4	exon	37674464	37674691	37674464	ID=Msa1325470-mRNA-1:exon:11510;Parent=Msa1325470-mRNA-1
chr8_4	exon	37674812	37675179	37674812	ID=Msa1325470-mRNA-1:exon:11509;Parent=Msa1325470-mRNA-1
chr8_4	exon	37675837	37675948	37675837	ID=Msa1325470-mRNA-1:exon:11508;Parent=Msa1325470-mRNA-1
chr8_4	five_prime_UTR	37675837	37675948	37675837	ID=Msa1325470-mRNA-1:five_prime_utr;Parent=Msa1325470-mRNA-1
chr8_4	five_prime_UTR	37675156	37675179	37675156	ID=Msa1325470-mRNA-1:five_prime_utr;Parent=Msa1325470-mRNA-1
chr8_4	CDS	37674812	37675155	37674812	ID=Msa1325470-mRNA-1:cds;Parent=Msa1325470-mRNA-1
chr8_4	CDS	37674464	37674691	37674464	ID=Msa1325470-mRNA-1:cds;Parent=Msa1325470-mRNA-1
chr8_4	CDS	37674003	37674357	37674003	ID=Msa1325470-mRNA-1:cds;Parent=Msa1325470-mRNA-1
chr8_4	CDS	37673787	37673914	37673787	ID=Msa1325470-mRNA-1:cds;Parent=Msa1325470-mRNA-1
chr8_4	CDS	37673495	37673630	37673495	ID=Msa1325470-mRNA-1:cds;Parent=Msa1325470-mRNA-1
chr8_4	CDS	37672811	37673050	37672811	ID=Msa1325470-mRNA-1:cds;Parent=Msa1325470-mRNA-1
chr8_4	three_prime_UTR	37672470	37672810	37672470	ID=Msa1325470-mRNA-1:three_prime_utr;Parent=Msa1325470-mRNA-1
chr8_4	three_prime_UTR	37672003	37672240	37672003	ID=Msa1325470-mRNA-1:three_prime_utr;Parent=Msa1325470-mRNA-1

Gene Sequence

>Msa1325470

ATGGGAGGTGGGTTTAGAGTACTTCACTTAGTAAGGCCATTTCTATCATTCCTTCCTGAAGTCCAGACCGCGGACAGGAAAGTGCCATTTAGAGAGAAGGTCATATATACCGTGATCTCCCTCTTCATTTTTCTTGTTTGTAGTCAGCTTCCTCTGTATGGAATACACTCGACAACAGGTGCAGATCCATTCTATTGGATGCGTGTTATCCTTGCTTCAAACCGTGGAACTGTTATGGAGCTTGGAATCACCCCCATTGTCACTTCTGGACTTGTAATGCAGCTTTTGGCTGGTTCTAAGATCATTGAAGTCGACAACAATGTCCGTGAGGATCGTGCTCTCTTGAACGGTGCACAGAAGCTACTTGGCATCTTGATAGCTGTTGGAGAGGCTGTTGCCTATGTTCTTTCTGGAATGTATGGTAGTGTAGGCCAGCTTGGAGTGGGAAATGCCATCCTTATCATCCTCCAGCTCTTTTTTGCCGGTATCATCGTCATATGTTTAGATGAGCTCCTTCAAAAAGGCTATGGTTTGGGATCTGGAATTTCTCTATTCATTGCCACCAATATCTGTGAAAACATTATATGGAAAGCATTTAGTCCCACAACCATTAACAGTGGTCGGGGAGCTGAATTTGAGGGTGCTGTTATTGCTCTATTCCATTTGTTGATTACTAGAACAGACAAGGTTCGTGCCCTTAGGGAAGCATTTTACCGGCAGAATCTTCCCAATGTCACAAATCTGCTAGCTACTGTCTTGATCTTCCTAATTGTGATATACTTCCAAGGTTTCCGTGTGGTTTTGCCTGTAAGGTCAAAGAATGCCCGTGGACAGCAGGGTTCATATCCAATCAAACTGTTTTACACCTCCAACATGCCCATTATTCTTCAGTCTGCTCTTGTTTCCAATCTCTACTTCATTTCCCAGCTGCTACACAGAAAATACAGTGGAAACTTCATTGTGAATCTGTTGGGCAAATGGAAGGAATCTGAGTATGGAGGTGGTCACTCTATTCCTGTTGGTGGCATTGCATACTATATAACTGCACCCTCTAGCTTAGCTGATATGGCAGCCAATCCTTTCCATGCATTGTTCTACCTTGTGTTTATGTTGTCAGCATGTGCCTTGTTCTCTAAAACTTGGATTGAAGTCTCTGGTTCGTCTGCTAGAGATGTTGCCAAGCAGTTGAAGGAACAACAAATGGTAATGCCTGGTCATCGGGAATCAAATTTGCAAAAAGAGCTGAACCGATATATTCCCACTGCTGCTGCATTTGGAGGAATGTGTATTGGTGCCCTGACAGTATTGGCAGATTTCATGGGTGCAATTGGTTCCGGGACCGGAATATTACTTGCAGTAACAATCATCTATCAGTACTTTGAGACATTTGAGAAGGAAAGAGCCAGCGAGCTTGGTTTCTTTGGTTTCTAA

Protein sequence

>Msa1325470

MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFIVNLLGKWKESEYGGGHSIPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF*