Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630730 | XP_013454883.1 | 99.384 | 487 | 3 | 0 | 1 | 487 | 1 | 487 | 0.0 | 978 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630730 | sp|Q84KJ6|AMT31_ORYSJ | 70.528 | 492 | 139 | 2 | 2 | 487 | 7 | 498 | 0.0 | 709 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0630730 | Msa0668880 | 0.996562 | 3.806774e-229 | -8.615850e-47 |
| Msa0534150 | Msa0630730 | 0.863701 | 2.063683e-64 | -8.615850e-47 |
| Msa0590150 | Msa0630730 | 0.926176 | 6.720166e-91 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630730 | MtrunA17_Chr7g0243071 | 84.631 | 488 | 73 | 2 | 1 | 487 | 1 | 487 | 0.0 | 809 |
| Msa0630730 | MtrunA17_Chr8g0385081 | 71.186 | 472 | 130 | 2 | 2 | 467 | 8 | 479 | 0.0 | 649 |
| Msa0630730 | MtrunA17_Chr4g0007621 | 99.678 | 311 | 1 | 0 | 1 | 311 | 1 | 311 | 0.0 | 630 |
| Msa0630730 | MtrunA17_Chr1g0163571 | 61.728 | 486 | 157 | 6 | 12 | 487 | 14 | 480 | 0.0 | 568 |
| Msa0630730 | MtrunA17_Chr7g0274111 | 54.082 | 490 | 189 | 8 | 1 | 475 | 1 | 469 | 0.0 | 515 |
| Msa0630730 | MtrunA17_Chr8g0371171 | 57.299 | 274 | 103 | 5 | 215 | 481 | 37 | 303 | 3.13e-102 | 308 |
| Msa0630730 | MtrunA17_Chr4g0007611 | 96.575 | 146 | 5 | 0 | 342 | 487 | 7 | 152 | 1.93e-96 | 288 |
| Msa0630730 | MtrunA17_Chr8g0371161 | 59.633 | 218 | 63 | 4 | 5 | 215 | 6 | 205 | 2.42e-74 | 233 |
| Msa0630730 | MtrunA17_Chr1g0168631 | 27.593 | 482 | 278 | 17 | 22 | 466 | 48 | 495 | 5.11e-24 | 105 |
| Msa0630730 | MtrunA17_Chr1g0189971 | 27.254 | 477 | 278 | 17 | 22 | 463 | 47 | 489 | 5.70e-22 | 99.0 |
| Msa0630730 | MtrunA17_Chr7g0262361 | 25.157 | 477 | 286 | 15 | 22 | 463 | 47 | 487 | 7.80e-17 | 82.8 |
| Msa0630730 | MtrunA17_Chr3g0104661 | 23.577 | 492 | 284 | 14 | 23 | 470 | 14 | 457 | 7.16e-16 | 79.7 |
| Msa0630730 | MtrunA17_Chr7g0272721 | 25.625 | 480 | 276 | 18 | 22 | 461 | 47 | 485 | 8.33e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630730 | AT2G38290.1 | 73.085 | 483 | 118 | 2 | 6 | 487 | 4 | 475 | 0.0 | 707 |
| Msa0630730 | AT2G38290.2 | 76.045 | 359 | 85 | 1 | 130 | 487 | 1 | 359 | 0.0 | 542 |
| Msa0630730 | AT1G64780.1 | 25.764 | 458 | 281 | 12 | 22 | 449 | 52 | 480 | 3.69e-23 | 102 |
| Msa0630730 | AT4G13510.1 | 26.427 | 473 | 281 | 14 | 22 | 461 | 42 | 480 | 3.94e-23 | 102 |
| Msa0630730 | AT3G24300.1 | 26.446 | 484 | 273 | 17 | 22 | 464 | 46 | 487 | 2.74e-22 | 100 |
| Msa0630730 | AT3G24290.1 | 26.247 | 461 | 270 | 12 | 22 | 448 | 46 | 470 | 1.67e-20 | 94.7 |
| Msa0630730 | AT4G28700.1 | 26.681 | 461 | 271 | 14 | 22 | 448 | 51 | 478 | 1.08e-19 | 92.4 |
Find 129 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATCTGACTCATAAATTTA+TGG | 0.137091 | 4_3:+12738309 | None:intergenic |
| ATTAATATGTTGGGTACTTT+TGG | 0.193601 | 4_3:-12741839 | Msa0630730:CDS |
| GTGGATTCACTGCAGCTTAT+TGG | 0.194340 | 4_3:-12741423 | Msa0630730:CDS |
| TATGTTATTCATCTTTCTTC+TGG | 0.220707 | 4_3:-12741451 | Msa0630730:CDS |
| TTGAAGAAATGAGTGCTTTC+AGG | 0.220872 | 4_3:+12741721 | None:intergenic |
| TTCAGTGATTGGAGCTGTTC+AGG | 0.233610 | 4_3:-12740754 | Msa0630730:CDS |
| ACTTTGGATGTTGCTTTCTT+TGG | 0.270509 | 4_3:-12740783 | Msa0630730:CDS |
| AATTCAAGGGGAGCCTTCTA+TGG | 0.272145 | 4_3:-12738613 | Msa0630730:CDS |
| ATTCATCTTTCTTCTGGAAT+TGG | 0.280645 | 4_3:-12741445 | Msa0630730:CDS |
| CGAGGAAGCTTATGCACTTT+GGG | 0.285767 | 4_3:-12738428 | Msa0630730:CDS |
| TTGGGCTACCGTATGGCTTT+TGG | 0.309076 | 4_3:-12741820 | Msa0630730:CDS |
| TGGATTCACTGCAGCTTATT+GGG | 0.318741 | 4_3:-12741422 | Msa0630730:intron |
| GGCTATGAATTCAGCTTTCA+TGG | 0.322861 | 4_3:-12741884 | Msa0630730:CDS |
| GAAGTATCACCCTATGTTAC+TGG | 0.331682 | 4_3:-12738346 | Msa0630730:CDS |
| CTGTGAGGAGGCCTCCTAAA+AGG | 0.337602 | 4_3:+12738683 | None:intergenic |
| TTTGGTAAGCCTTCAGTGAT+TGG | 0.339494 | 4_3:-12740765 | Msa0630730:CDS |
| AGCATAAGCAATACATTGTT+TGG | 0.347245 | 4_3:+12740939 | None:intergenic |
| TTCTTGGAAGAATGAACATT+AGG | 0.357541 | 4_3:-12741588 | Msa0630730:CDS |
| TTGTTAGCTGGATCTGTTCT+TGG | 0.363722 | 4_3:-12741604 | Msa0630730:CDS |
| GGTGCACCTTTACCCCAAAA+TGG | 0.368640 | 4_3:+12741784 | None:intergenic |
| ATAGTGATGGGAATACTATC+TGG | 0.375245 | 4_3:-12739832 | Msa0630730:CDS |
| GGTAAAGGTGCACCTTCATT+AGG | 0.379029 | 4_3:-12741775 | Msa0630730:CDS |
| TAATAGCAGCAAAATTGAAT+TGG | 0.388241 | 4_3:+12741635 | None:intergenic |
| TCTTGGAAGAATGAACATTA+GGG | 0.392076 | 4_3:-12741587 | Msa0630730:CDS |
| GCCGCCGCCATGCCCATAGA+AGG | 0.393092 | 4_3:+12738600 | None:intergenic |
| TGGGGTGTCATTGATTTCTC+TGG | 0.400224 | 4_3:-12741478 | Msa0630730:CDS |
| TTGTTATGGATGGGTTGGTC+AGG | 0.408273 | 4_3:-12740903 | Msa0630730:CDS |
| TGCATCAGTATTAATATGTT+GGG | 0.408318 | 4_3:-12741848 | Msa0630730:CDS |
| CATCTTTCTTCTGGAATTGG+TGG | 0.415049 | 4_3:-12741442 | Msa0630730:CDS |
| ATAGAAGGCTCCCCTTGAAT+TGG | 0.424952 | 4_3:+12738615 | None:intergenic |
| GCCTTCTATGGGCATGGCGG+CGG | 0.425599 | 4_3:-12738601 | Msa0630730:CDS |
| ATGCATCAGTATTAATATGT+TGG | 0.430917 | 4_3:-12741849 | Msa0630730:CDS |
| GCTTATGCACTTTGGGGTGA+TGG | 0.431224 | 4_3:-12738421 | Msa0630730:CDS |
| GTTTGCATCACTCCTGGAGC+AGG | 0.433827 | 4_3:-12740714 | Msa0630730:intron |
| TCAGTGATTGGAGCTGTTCA+GGG | 0.436259 | 4_3:-12740753 | Msa0630730:CDS |
| GCGAGGAAGCTTATGCACTT+TGG | 0.438004 | 4_3:-12738429 | Msa0630730:CDS |
| GATGAGGATCCATGCTTAGT+TGG | 0.439794 | 4_3:+12738385 | None:intergenic |
| ATGAGGATCCATGCTTAGTT+GGG | 0.442073 | 4_3:+12738386 | None:intergenic |
| TCAGTTCTTGAAGCAATTAG+TGG | 0.444371 | 4_3:-12738575 | Msa0630730:CDS |
| GGCCAAGGTTGAAGAGTGAT+AGG | 0.447646 | 4_3:-12740974 | Msa0630730:CDS |
| TGGCAGGGCTTGTGCAGTCA+TGG | 0.448163 | 4_3:-12739861 | Msa0630730:intron |
| GAAGAATGAACATTAGGGCT+TGG | 0.448442 | 4_3:-12741582 | Msa0630730:CDS |
| AGCACTCATTTCTTCAAGAA+TGG | 0.450618 | 4_3:-12741715 | Msa0630730:CDS |
| TCTTTGCAGACTCATATTGC+CGG | 0.453439 | 4_3:-12738641 | Msa0630730:CDS |
| TCCCTATCACTCTTCAACCT+TGG | 0.457019 | 4_3:+12740972 | None:intergenic |
| GGACTTGTTTGCATCACTCC+TGG | 0.458843 | 4_3:-12740720 | Msa0630730:CDS |
| GAAGTCAACTCTTCTACAAA+AGG | 0.471992 | 4_3:-12739773 | Msa0630730:intron |
| TCGAACGACCAGCTCGAGAC+TGG | 0.475810 | 4_3:-12738469 | Msa0630730:CDS |
| CAGGATTGTTATGGATGGGT+TGG | 0.479032 | 4_3:-12740908 | Msa0630730:CDS |
| TTGCTTATGCTAGCAGGTGC+AGG | 0.486246 | 4_3:-12740927 | Msa0630730:CDS |
| GAGTCAATGTTTGCTGCATA+TGG | 0.486969 | 4_3:+12740864 | None:intergenic |
| GCATGCTTTGTAGACCAACT+AGG | 0.489380 | 4_3:+12741950 | None:intergenic |
| AATGAACATTAGGGCTTGGA+TGG | 0.496494 | 4_3:-12741578 | Msa0630730:CDS |
| TCTCCTAGTGTGGACCACTT+TGG | 0.497317 | 4_3:-12740799 | Msa0630730:CDS |
| AATGTATTGCTTATGCTAGC+AGG | 0.508189 | 4_3:-12740933 | Msa0630730:CDS |
| GTAGAAGAGTTGACTTCTTG+TGG | 0.508479 | 4_3:+12739779 | None:intergenic |
| GTTGGTCTACAAAGCATGCC+AGG | 0.511038 | 4_3:-12741946 | Msa0630730:CDS |
| TATTGCCGGTGACCAATTCA+AGG | 0.517642 | 4_3:-12738627 | Msa0630730:CDS |
| GGCAGGGCTTGTGCAGTCAT+GGG | 0.521391 | 4_3:-12739860 | Msa0630730:intron |
| AATATGAGTCTGCAAAGATC+TGG | 0.521520 | 4_3:+12738646 | None:intergenic |
| TAGCAGGTGCAGGATTGTTA+TGG | 0.525281 | 4_3:-12740917 | Msa0630730:CDS |
| TTTATAGACAAACCTGCTCC+AGG | 0.525389 | 4_3:+12740702 | None:intergenic |
| ACCTCTTGCCCCAGTAACAT+AGG | 0.525904 | 4_3:+12738336 | None:intergenic |
| ATGGGTTGGTCAGGATTCAA+TGG | 0.526672 | 4_3:-12740894 | Msa0630730:CDS |
| AGGTGCAGGATTGTTATGGA+TGG | 0.529331 | 4_3:-12740913 | Msa0630730:CDS |
| TCTCCTTTGTTTAGCCATTG+TGG | 0.531344 | 4_3:+12742000 | None:intergenic |
| CCCTATGTTACTGGGGCAAG+AGG | 0.535754 | 4_3:-12738337 | Msa0630730:CDS |
| ATGACAGCATCAACCCTAGT+TGG | 0.538896 | 4_3:-12741964 | Msa0630730:CDS |
| AAGTATCACCCTATGTTACT+GGG | 0.541502 | 4_3:-12738345 | Msa0630730:CDS |
| TTTAGCCATTGTGGTGATGA+AGG | 0.544202 | 4_3:+12742009 | None:intergenic |
| CATCCAAAGTGGTCCACACT+AGG | 0.544890 | 4_3:+12740796 | None:intergenic |
| TATTCCATGGTGGACTATGA+TGG | 0.546570 | 4_3:-12739806 | Msa0630730:CDS |
| CATGCTTTGTAGACCAACTA+GGG | 0.550313 | 4_3:+12741951 | None:intergenic |
| TAAGAGAAAATGAGCCAAAG+AGG | 0.550720 | 4_3:+12741547 | None:intergenic |
| TAAGCAATACATTGTTTGGT+GGG | 0.551524 | 4_3:+12740943 | None:intergenic |
| TTTCACACACATGCTGTGGC+CGG | 0.552024 | 4_3:-12738706 | Msa0630730:CDS |
| GGTGTCATTGATTTCTCTGG+TGG | 0.552125 | 4_3:-12741475 | Msa0630730:CDS |
| TAGTGATGGGAATACTATCT+GGG | 0.552494 | 4_3:-12739831 | Msa0630730:CDS |
| AAGTATGACCCAACTAAGCA+TGG | 0.559295 | 4_3:-12738394 | Msa0630730:CDS |
| GCTCTTGGTATGCTGTTGGA+AGG | 0.561258 | 4_3:+12742037 | None:intergenic |
| GCTGTTCAGGGTATGATGAC+AGG | 0.562744 | 4_3:-12740741 | Msa0630730:CDS |
| GTGATGAAGGAAGGTGCTCT+TGG | 0.563434 | 4_3:+12742022 | None:intergenic |
| TACTATCTGGGAGTATTCCA+TGG | 0.563931 | 4_3:-12739819 | Msa0630730:CDS |
| ATTCAAGGGGAGCCTTCTAT+GGG | 0.564319 | 4_3:-12738612 | Msa0630730:CDS |
| ATAAGCAATACATTGTTTGG+TGG | 0.568631 | 4_3:+12740942 | None:intergenic |
| GAAGAGAAGAATTAGTGTGG+TGG | 0.570040 | 4_3:+12738519 | None:intergenic |
| CTCTTGGTATGCTGTTGGAA+GGG | 0.571295 | 4_3:+12742038 | None:intergenic |
| CTGGTCGTTCGACATCCTCA+AGG | 0.571654 | 4_3:+12738480 | None:intergenic |
| AGGTGCTCTTGGTATGCTGT+TGG | 0.575427 | 4_3:+12742033 | None:intergenic |
| CATCATCGCCAGTCTCGAGC+TGG | 0.582123 | 4_3:+12738461 | None:intergenic |
| TCATGGGCAGCTATAGTGAT+GGG | 0.585092 | 4_3:-12739844 | Msa0630730:CDS |
| AGGGGAGCCTTCTATGGGCA+TGG | 0.589588 | 4_3:-12738607 | Msa0630730:CDS |
| CTGCAACTAGTCTCCTAGTG+TGG | 0.595858 | 4_3:-12740809 | Msa0630730:CDS |
| GTCATGGGCAGCTATAGTGA+TGG | 0.598047 | 4_3:-12739845 | Msa0630730:CDS |
| GCTCCCCTTGAATTGGTCAC+CGG | 0.599961 | 4_3:+12738622 | None:intergenic |
| GTTCATCACCAAAAGCCATA+CGG | 0.600057 | 4_3:+12741812 | None:intergenic |
| ACACAGGTAGATGACACCCT+TGG | 0.601482 | 4_3:-12738733 | Msa0630730:intron |
| GAGGAGGCCTCCTAAAAGGC+CGG | 0.601994 | 4_3:+12738687 | None:intergenic |
| CCTCTTGCCCCAGTAACATA+GGG | 0.604247 | 4_3:+12738337 | None:intergenic |
| GAGGAAGCTTATGCACTTTG+GGG | 0.606601 | 4_3:-12738427 | Msa0630730:CDS |
| GGAGCCTTCTATGGGCATGG+CGG | 0.613135 | 4_3:-12738604 | Msa0630730:CDS |
| AAATAAACTAGTGAAGCCAT+AGG | 0.614906 | 4_3:+12741658 | None:intergenic |
| GCCATTGTGGTGATGAAGGA+AGG | 0.619330 | 4_3:+12742013 | None:intergenic |
| AGTAATCCTCTATGCAAGCA+TGG | 0.627678 | 4_3:-12741920 | Msa0630730:CDS |
| ATTGCCGGTGACCAATTCAA+GGG | 0.630938 | 4_3:-12738626 | Msa0630730:CDS |
| GCCAAGGTTGAAGAGTGATA+GGG | 0.631315 | 4_3:-12740973 | Msa0630730:CDS |
| AAAGAAAGCAACATCCAAAG+TGG | 0.635054 | 4_3:+12740785 | None:intergenic |
| TAAACAAAGGAGACAACTCA+TGG | 0.635470 | 4_3:-12741990 | Msa0630730:CDS |
| TATGAAGAGAAGAATTAGTG+TGG | 0.639971 | 4_3:+12738516 | None:intergenic |
| TACAACTGTTCATACCCTTG+AGG | 0.646650 | 4_3:-12738495 | Msa0630730:CDS |
| TGGTCGTTCGACATCCTCAA+GGG | 0.648802 | 4_3:+12738481 | None:intergenic |
| TGAACAGCTCCAATCACTGA+AGG | 0.650438 | 4_3:+12740756 | None:intergenic |
| CTGCTAAGAGACCTGTGAGG+AGG | 0.651843 | 4_3:+12738671 | None:intergenic |
| GGTGCAGGATTGTTATGGAT+GGG | 0.652332 | 4_3:-12740912 | Msa0630730:CDS |
| GCATAGAGGATTACTAGACC+TGG | 0.653060 | 4_3:+12741928 | None:intergenic |
| TCACCACAATGGCTAAACAA+AGG | 0.669086 | 4_3:-12742003 | Msa0630730:CDS |
| GGTTGGTCAGGATTCAATGG+TGG | 0.669155 | 4_3:-12740891 | Msa0630730:CDS |
| ACTGGCGATGATGCTGTACA+CGG | 0.672487 | 4_3:-12738451 | Msa0630730:CDS |
| CGATGATGCTGTACACGGCG+AGG | 0.679210 | 4_3:-12738446 | Msa0630730:CDS |
| ACCTTCCTTCATCACCACAA+TGG | 0.681471 | 4_3:-12742014 | Msa0630730:CDS |
| AGTGTTTCACACACATGCTG+TGG | 0.682031 | 4_3:-12738710 | Msa0630730:CDS |
| GAAGAGTTGACTTCTTGTGG+AGG | 0.685329 | 4_3:+12739782 | None:intergenic |
| TTGCCGGTGACCAATTCAAG+GGG | 0.686365 | 4_3:-12738625 | Msa0630730:CDS |
| ATGTGTGTGAAACACTCCAA+GGG | 0.695193 | 4_3:+12738717 | None:intergenic |
| AGGACCATCATAGTCCACCA+TGG | 0.707593 | 4_3:+12739802 | None:intergenic |
| AGTATCACCCTATGTTACTG+GGG | 0.715721 | 4_3:-12738344 | Msa0630730:CDS |
| CATGTGTGTGAAACACTCCA+AGG | 0.722123 | 4_3:+12738716 | None:intergenic |
| TATCTGGGAGTATTCCATGG+TGG | 0.732232 | 4_3:-12739816 | Msa0630730:CDS |
| GTTCTGCTAAGAGACCTGTG+AGG | 0.819277 | 4_3:+12738668 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAATAATATTACTATTTTA+GGG | + | chr4_3:12740044-12740063 | None:intergenic | 10.0% |
| !!! | GTATTTTATATTTTAGAATT+TGG | - | chr4_3:12740909-12740928 | Msa0630730:CDS | 10.0% |
| !!! | TTGTTTTTCATTTTATTTTT+TGG | + | chr4_3:12741075-12741094 | None:intergenic | 10.0% |
| !!! | GTATTATATATTTTAGAATT+TGG | - | chr4_3:12741116-12741135 | Msa0630730:intron | 10.0% |
| !! | AATGATTAAATAATTACAAA+AGG | - | chr4_3:12741320-12741339 | Msa0630730:intron | 10.0% |
| !! | TATATAGTTAATTCATATAA+TGG | + | chr4_3:12741602-12741621 | None:intergenic | 10.0% |
| !!! | AATTTTGTTTGTTTTTTTCT+AGG | - | chr4_3:12739360-12739379 | Msa0630730:intron | 15.0% |
| !!! | CACAATAATATTACTATTTT+AGG | + | chr4_3:12740045-12740064 | None:intergenic | 15.0% |
| !!! | ACATTAATGTTACTATTTTA+GGG | + | chr4_3:12740089-12740108 | None:intergenic | 15.0% |
| !!! | AGTAATATCATTTAAACTTT+TGG | - | chr4_3:12740196-12740215 | Msa0630730:intron | 15.0% |
| !!! | ACTTCAAACATAATTTTTAA+GGG | + | chr4_3:12740247-12740266 | None:intergenic | 15.0% |
| !!! | AACTTCAAACATAATTTTTA+AGG | + | chr4_3:12740248-12740267 | None:intergenic | 15.0% |
| !! | AAAGATGTTATAGTATATAT+TGG | - | chr4_3:12740446-12740465 | Msa0630730:intron | 15.0% |
| !! | AGAATCAAATTATCTAATTA+AGG | + | chr4_3:12740667-12740686 | None:intergenic | 15.0% |
| !! | TATAATTCAATTGATAGATA+CGG | - | chr4_3:12740978-12740997 | Msa0630730:CDS | 15.0% |
| !! | AAATTATTAAGGAAAAAAAG+TGG | + | chr4_3:12741207-12741226 | None:intergenic | 15.0% |
| !! | GCTCAAAAATAAAATTATTA+AGG | + | chr4_3:12741218-12741237 | None:intergenic | 15.0% |
| !! | TTTGTCAAAAAAAAATTACA+AGG | + | chr4_3:12741272-12741291 | None:intergenic | 15.0% |
| !! | TACAAAAGGATATTATTTAT+TGG | - | chr4_3:12741334-12741353 | Msa0630730:intron | 15.0% |
| !! | ACAAAAGGATATTATTTATT+GGG | - | chr4_3:12741335-12741354 | Msa0630730:intron | 15.0% |
| !!! | TATCTTTTTTATAAATGAAG+AGG | + | chr4_3:12741368-12741387 | None:intergenic | 15.0% |
| !!! | AGTGAATTTATCATAGTTTT+TGG | - | chr4_3:12738983-12739002 | Msa0630730:intron | 20.0% |
| !!! | ATTAAGTTGTTTATCAAAAC+CGG | - | chr4_3:12739306-12739325 | Msa0630730:intron | 20.0% |
| !!! | TAATTCTAGTTGAAGATTTT+CGG | + | chr4_3:12739333-12739352 | None:intergenic | 20.0% |
| !! | AAAAACAAACAAAATTGACT+AGG | + | chr4_3:12739356-12739375 | None:intergenic | 20.0% |
| !! | CATAATCAATAATTGATCAT+AGG | + | chr4_3:12739706-12739725 | None:intergenic | 20.0% |
| !! | TATTATTGTTGGTATTATGT+TGG | - | chr4_3:12739954-12739973 | Msa0630730:intron | 20.0% |
| !! | TTATTAGGTGAAATAATAAG+AGG | + | chr4_3:12740001-12740020 | None:intergenic | 20.0% |
| !! | GAATCAGATGTATATTTATT+AGG | + | chr4_3:12740016-12740035 | None:intergenic | 20.0% |
| !!! | ATTAATGTTACTATTTTAGG+GGG | + | chr4_3:12740087-12740106 | None:intergenic | 20.0% |
| !!! | CATTAATGTTACTATTTTAG+GGG | + | chr4_3:12740088-12740107 | None:intergenic | 20.0% |
| !!! | CACATTAATGTTACTATTTT+AGG | + | chr4_3:12740090-12740109 | None:intergenic | 20.0% |
| !! | ATCAAATTATCTAATTAAGG+TGG | + | chr4_3:12740664-12740683 | None:intergenic | 20.0% |
| !! | TAGATAATTTGATTCTTTAG+TGG | - | chr4_3:12740671-12740690 | Msa0630730:intron | 20.0% |
| !!! | GGTTGATAATATTTATTTGA+TGG | - | chr4_3:12740783-12740802 | Msa0630730:CDS | 20.0% |
| !!! | TTGTGATATTTTGTTATTCT+TGG | - | chr4_3:12740814-12740833 | Msa0630730:CDS | 20.0% |
| !!! | TATTTTTTGGACAAATAGTT+TGG | + | chr4_3:12741062-12741081 | None:intergenic | 20.0% |
| !! | GTAAGATTTGATATTTGATA+TGG | + | chr4_3:12741175-12741194 | None:intergenic | 20.0% |
| !! | TAGTTAATTCATATAATGGT+AGG | + | chr4_3:12741598-12741617 | None:intergenic | 20.0% |
| !! | TTAACTATATACAATAACAC+AGG | - | chr4_3:12741611-12741630 | Msa0630730:CDS | 20.0% |
| ! | ATGCATCAGTATTAATATGT+TGG | - | chr4_3:12738511-12738530 | Msa0630730:CDS | 25.0% |
| ! | TGCATCAGTATTAATATGTT+GGG | - | chr4_3:12738512-12738531 | Msa0630730:CDS | 25.0% |
| !! | ATTAATATGTTGGGTACTTT+TGG | - | chr4_3:12738521-12738540 | Msa0630730:CDS | 25.0% |
| !! | TTAATATGTTGGGTACTTTT+GGG | - | chr4_3:12738522-12738541 | Msa0630730:CDS | 25.0% |
| !!! | TGATGAACTTTTTCCATTTT+GGG | - | chr4_3:12738563-12738582 | Msa0630730:CDS | 25.0% |
| !! | AGAAATTTTTGACCTAATGA+AGG | + | chr4_3:12738600-12738619 | None:intergenic | 25.0% |
| ! | TAATAGCAGCAAAATTGAAT+TGG | + | chr4_3:12738728-12738747 | None:intergenic | 25.0% |
| !!! | ATTACTGTTATTTTGTTAGC+TGG | - | chr4_3:12738744-12738763 | Msa0630730:intron | 25.0% |
| ! | TATGTTATTCATCTTTCTTC+TGG | - | chr4_3:12738909-12738928 | Msa0630730:intron | 25.0% |
| ! | AGAAGTAGTTTACATACATA+AGG | - | chr4_3:12739250-12739269 | Msa0630730:intron | 25.0% |
| ! | ATTGTACGCTTATAACATAA+CGG | + | chr4_3:12739288-12739307 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCAAAACC+GGG | - | chr4_3:12739307-12739326 | Msa0630730:intron | 25.0% |
| !!! | TTGTTTGTTTTTTTCTAGGT+TGG | - | chr4_3:12739364-12739383 | Msa0630730:intron | 25.0% |
| !!! | TGTTTGTTTTTTTCTAGGTT+GGG | - | chr4_3:12739365-12739384 | Msa0630730:intron | 25.0% |
| !!! | TTAATGTTACTATTTTAGGG+GGG | + | chr4_3:12740086-12740105 | None:intergenic | 25.0% |
| ! | TGATATTACTCACATGTAAT+TGG | + | chr4_3:12740186-12740205 | None:intergenic | 25.0% |
| ! | GTAATGAAGAGTTGTTATAT+TGG | - | chr4_3:12740310-12740329 | Msa0630730:intron | 25.0% |
| ! | ATTAGATTAGATGTACCAAA+TGG | - | chr4_3:12740345-12740364 | Msa0630730:intron | 25.0% |
| ! | GATAATGATGTTGAAAATGA+AGG | - | chr4_3:12740421-12740440 | Msa0630730:intron | 25.0% |
| ! | ATATATTGGCATTTACTAAG+AGG | - | chr4_3:12740460-12740479 | Msa0630730:intron | 25.0% |
| ! | TCATTACAATCAACATTACA+AGG | + | chr4_3:12741305-12741324 | None:intergenic | 25.0% |
| !!! | TTGTTTTTATCTCTCTCAAA+CGG | - | chr4_3:12741455-12741474 | Msa0630730:CDS | 25.0% |
| AAGCATGGTCAAAAAGAAAT+GGG | - | chr4_3:12738455-12738474 | Msa0630730:CDS | 30.0% | |
| !! | GTGATGAACTTTTTCCATTT+TGG | - | chr4_3:12738562-12738581 | Msa0630730:CDS | 30.0% |
| !! | GATGAACTTTTTCCATTTTG+GGG | - | chr4_3:12738564-12738583 | Msa0630730:CDS | 30.0% |
| AAATAAACTAGTGAAGCCAT+AGG | + | chr4_3:12738705-12738724 | None:intergenic | 30.0% | |
| TTCTTGGAAGAATGAACATT+AGG | - | chr4_3:12738772-12738791 | Msa0630730:intron | 30.0% | |
| TCTTGGAAGAATGAACATTA+GGG | - | chr4_3:12738773-12738792 | Msa0630730:intron | 30.0% | |
| !!! | TGGTGGATTTTTGTATCATT+GGG | - | chr4_3:12738863-12738882 | Msa0630730:intron | 30.0% |
| !! | ATTCATCTTTCTTCTGGAAT+TGG | - | chr4_3:12738915-12738934 | Msa0630730:intron | 30.0% |
| ! | AATATGCAAGTTTTTCTGTC+AGG | + | chr4_3:12739153-12739172 | None:intergenic | 30.0% |
| ACATACATAAGGACTTGATA+CGG | - | chr4_3:12739261-12739280 | Msa0630730:intron | 30.0% | |
| TAAGCAATACATTGTTTGGT+GGG | + | chr4_3:12739420-12739439 | None:intergenic | 30.0% | |
| ATAAGCAATACATTGTTTGG+TGG | + | chr4_3:12739421-12739440 | None:intergenic | 30.0% | |
| AGCATAAGCAATACATTGTT+TGG | + | chr4_3:12739424-12739443 | None:intergenic | 30.0% | |
| CAATAAAGATTGAATCTCAG+TGG | - | chr4_3:12739759-12739778 | Msa0630730:intron | 30.0% | |
| !! | ATGGGAAGTGTTATTATTGT+TGG | - | chr4_3:12739943-12739962 | Msa0630730:intron | 30.0% |
| TATTGTTGGTATTATGTTGG+AGG | - | chr4_3:12739957-12739976 | Msa0630730:intron | 30.0% | |
| !! | ACTAAAGTTTTGACATGAAG+TGG | - | chr4_3:12740110-12740129 | Msa0630730:intron | 30.0% |
| TCCTCTACTTAAGTAACTTT+AGG | - | chr4_3:12740375-12740394 | Msa0630730:intron | 30.0% | |
| ACCTAAAGTTACTTAAGTAG+AGG | + | chr4_3:12740379-12740398 | None:intergenic | 30.0% | |
| ! | GGTGGATTCTTAAAATAAAG+AGG | + | chr4_3:12740646-12740665 | None:intergenic | 30.0% |
| GGATCTATAGAATATTCCAA+CGG | - | chr4_3:12740692-12740711 | Msa0630730:intron | 30.0% | |
| ! | TAGAATATTCCAACGGTTTT+TGG | - | chr4_3:12740699-12740718 | Msa0630730:intron | 30.0% |
| TGGCTAAATTTCACTTGTAA+GGG | + | chr4_3:12741039-12741058 | None:intergenic | 30.0% | |
| ! | TTTTTGGACAAATAGTTTGG+TGG | + | chr4_3:12741059-12741078 | None:intergenic | 30.0% |
| ! | TGTCCATGCAATTTGTTTAT+AGG | - | chr4_3:12741535-12741554 | Msa0630730:CDS | 30.0% |
| TATGAAGAGAAGAATTAGTG+TGG | + | chr4_3:12741847-12741866 | None:intergenic | 30.0% | |
| !! | AATTTCATCTGCTTTTGATG+AGG | + | chr4_3:12741994-12742013 | None:intergenic | 30.0% |
| TAAACAAAGGAGACAACTCA+TGG | - | chr4_3:12738370-12738389 | Msa0630730:CDS | 35.0% | |
| CAAGCATGGTCAAAAAGAAA+TGG | - | chr4_3:12738454-12738473 | Msa0630730:CDS | 35.0% | |
| !!! | CTTTTTCCATTTTGGGGTAA+AGG | - | chr4_3:12738570-12738589 | Msa0630730:CDS | 35.0% |
| TTGAAGAAATGAGTGCTTTC+AGG | + | chr4_3:12738642-12738661 | None:intergenic | 35.0% | |
| AGCACTCATTTCTTCAAGAA+TGG | - | chr4_3:12738645-12738664 | Msa0630730:CDS | 35.0% | |
| !!! | AACACAACCACTTTTTCCTA+TGG | - | chr4_3:12738686-12738705 | Msa0630730:CDS | 35.0% |
| TAAGAGAAAATGAGCCAAAG+AGG | + | chr4_3:12738816-12738835 | None:intergenic | 35.0% | |
| ! | CTCATTTTCTCTTACACTGT+TGG | - | chr4_3:12738822-12738841 | Msa0630730:intron | 35.0% |
| !! | TGTTGGTGCTTTTAGCATAT+GGG | - | chr4_3:12738839-12738858 | Msa0630730:intron | 35.0% |
| !!! | GTGGTGGATTTTTGTATCAT+TGG | - | chr4_3:12738862-12738881 | Msa0630730:intron | 35.0% |
| !! | GGTGGATTTTTGTATCATTG+GGG | - | chr4_3:12738864-12738883 | Msa0630730:intron | 35.0% |
| TGTTGTTGCAAGAACAATCA+TGG | - | chr4_3:12739040-12739059 | Msa0630730:intron | 35.0% | |
| AAGATTGCGACCTTAGTTTA+AGG | - | chr4_3:12739095-12739114 | Msa0630730:intron | 35.0% | |
| AGATTGCGACCTTAGTTTAA+GGG | - | chr4_3:12739096-12739115 | Msa0630730:intron | 35.0% | |
| TGTTGAGATACGAGAACTTA+TGG | - | chr4_3:12739173-12739192 | Msa0630730:intron | 35.0% | |
| AATGTATTGCTTATGCTAGC+AGG | - | chr4_3:12739427-12739446 | Msa0630730:intron | 35.0% | |
| AAAGAAAGCAACATCCAAAG+TGG | + | chr4_3:12739578-12739597 | None:intergenic | 35.0% | |
| !! | ACTTTGGATGTTGCTTTCTT+TGG | - | chr4_3:12739577-12739596 | Msa0630730:intron | 35.0% |
| ACGCAATAATGTATCGTAAG+TGG | + | chr4_3:12739803-12739822 | None:intergenic | 35.0% | |
| ATTGTGACTAAAGTCTTGAC+AGG | - | chr4_3:12740059-12740078 | Msa0630730:intron | 35.0% | |
| TTGTGACTAAAGTCTTGACA+GGG | - | chr4_3:12740060-12740079 | Msa0630730:intron | 35.0% | |
| TTAGATGTACCAAATGGACA+AGG | - | chr4_3:12740351-12740370 | Msa0630730:intron | 35.0% | |
| TATTGGCATTTACTAAGAGG+TGG | - | chr4_3:12740463-12740482 | Msa0630730:intron | 35.0% | |
| ATTGGCATTTACTAAGAGGT+GGG | - | chr4_3:12740464-12740483 | Msa0630730:intron | 35.0% | |
| ! | ATAGTGATGGGAATACTATC+TGG | - | chr4_3:12740528-12740547 | Msa0630730:intron | 35.0% |
| ! | TAGTGATGGGAATACTATCT+GGG | - | chr4_3:12740529-12740548 | Msa0630730:intron | 35.0% |
| GAAGTCAACTCTTCTACAAA+AGG | - | chr4_3:12740587-12740606 | Msa0630730:intron | 35.0% | |
| TTCAAAGAACCAAAAACCGT+TGG | + | chr4_3:12740711-12740730 | None:intergenic | 35.0% | |
| GCAGTCTCTCTTCAAAATAT+TGG | - | chr4_3:12740762-12740781 | Msa0630730:CDS | 35.0% | |
| GGCTAAATTTCACTTGTAAG+GGG | + | chr4_3:12741038-12741057 | None:intergenic | 35.0% | |
| GTGGCTAAATTTCACTTGTA+AGG | + | chr4_3:12741040-12741059 | None:intergenic | 35.0% | |
| ! | GATATGGCTCTGTTATTACT+TGG | + | chr4_3:12741159-12741178 | None:intergenic | 35.0% |
| ATGGACAAGAGGTAACAAAT+AGG | + | chr4_3:12741522-12741541 | None:intergenic | 35.0% | |
| AAACAAATTGCATGGACAAG+AGG | + | chr4_3:12741533-12741552 | None:intergenic | 35.0% | |
| CCTCCTATAAACAAATTGCA+TGG | + | chr4_3:12741541-12741560 | None:intergenic | 35.0% | |
| ! | CCATGCAATTTGTTTATAGG+AGG | - | chr4_3:12741538-12741557 | Msa0630730:CDS | 35.0% |
| AATGGTAGGAAAACATGCAT+AGG | + | chr4_3:12741584-12741603 | None:intergenic | 35.0% | |
| AATATGAGTCTGCAAAGATC+TGG | + | chr4_3:12741717-12741736 | None:intergenic | 35.0% | |
| TCAGTTCTTGAAGCAATTAG+TGG | - | chr4_3:12741785-12741804 | Msa0630730:CDS | 35.0% | |
| AAGTATCACCCTATGTTACT+GGG | - | chr4_3:12742015-12742034 | Msa0630730:CDS | 35.0% | |
| ! | TTTAGCCATTGTGGTGATGA+AGG | + | chr4_3:12738354-12738373 | None:intergenic | 40.0% |
| TCACCACAATGGCTAAACAA+AGG | - | chr4_3:12738357-12738376 | Msa0630730:CDS | 40.0% | |
| ! | TCTCCTTTGTTTAGCCATTG+TGG | + | chr4_3:12738363-12738382 | None:intergenic | 40.0% |
| CATGCTTTGTAGACCAACTA+GGG | + | chr4_3:12738412-12738431 | None:intergenic | 40.0% | |
| AGTAATCCTCTATGCAAGCA+TGG | - | chr4_3:12738440-12738459 | Msa0630730:CDS | 40.0% | |
| ! | TTTTGACCATGCTTGCATAG+AGG | + | chr4_3:12738449-12738468 | None:intergenic | 40.0% |
| GGCTATGAATTCAGCTTTCA+TGG | - | chr4_3:12738476-12738495 | Msa0630730:CDS | 40.0% | |
| GTTCATCACCAAAAGCCATA+CGG | + | chr4_3:12738551-12738570 | None:intergenic | 40.0% | |
| AGTGAAGCCATAGGAAAAAG+TGG | + | chr4_3:12738696-12738715 | None:intergenic | 40.0% | |
| TTGTTAGCTGGATCTGTTCT+TGG | - | chr4_3:12738756-12738775 | Msa0630730:intron | 40.0% | |
| GAAGAATGAACATTAGGGCT+TGG | - | chr4_3:12738778-12738797 | Msa0630730:intron | 40.0% | |
| AATGAACATTAGGGCTTGGA+TGG | - | chr4_3:12738782-12738801 | Msa0630730:intron | 40.0% | |
| !! | CTGTTGGTGCTTTTAGCATA+TGG | - | chr4_3:12738838-12738857 | Msa0630730:intron | 40.0% |
| !! | GTTGGTGCTTTTAGCATATG+GGG | - | chr4_3:12738840-12738859 | Msa0630730:intron | 40.0% |
| !! | CATCTTTCTTCTGGAATTGG+TGG | - | chr4_3:12738918-12738937 | Msa0630730:intron | 40.0% |
| TGGATTCACTGCAGCTTATT+GGG | - | chr4_3:12738938-12738957 | Msa0630730:intron | 40.0% | |
| !!! | TTTTTTTCTAGGTTGGGCCA+AGG | - | chr4_3:12739371-12739390 | Msa0630730:intron | 40.0% |
| ! | GAGTCAATGTTTGCTGCATA+TGG | + | chr4_3:12739499-12739518 | None:intergenic | 40.0% |
| TTTGGTAAGCCTTCAGTGAT+TGG | - | chr4_3:12739595-12739614 | Msa0630730:intron | 40.0% | |
| TTTATAGACAAACCTGCTCC+AGG | + | chr4_3:12739661-12739680 | None:intergenic | 40.0% | |
| TTGGCATTTACTAAGAGGTG+GGG | - | chr4_3:12740465-12740484 | Msa0630730:intron | 40.0% | |
| !! | TACTATCTGGGAGTATTCCA+TGG | - | chr4_3:12740541-12740560 | Msa0630730:intron | 40.0% |
| !! | TATTCCATGGTGGACTATGA+TGG | - | chr4_3:12740554-12740573 | Msa0630730:intron | 40.0% |
| ! | GTAGAAGAGTTGACTTCTTG+TGG | + | chr4_3:12740584-12740603 | None:intergenic | 40.0% |
| TTTGAAGAGAGACTGCAACT+AGG | + | chr4_3:12740758-12740777 | None:intergenic | 40.0% | |
| GACAAGAGGTAACAAATAGG+AGG | + | chr4_3:12741519-12741538 | None:intergenic | 40.0% | |
| GGAAAACATGCATAGGATCA+AGG | + | chr4_3:12741577-12741596 | None:intergenic | 40.0% | |
| ATGTGTGTGAAACACTCCAA+GGG | + | chr4_3:12741646-12741665 | None:intergenic | 40.0% | |
| TCTTTGCAGACTCATATTGC+CGG | - | chr4_3:12741719-12741738 | Msa0630730:CDS | 40.0% | |
| GAAGAGAAGAATTAGTGTGG+TGG | + | chr4_3:12741844-12741863 | None:intergenic | 40.0% | |
| TACAACTGTTCATACCCTTG+AGG | - | chr4_3:12741865-12741884 | Msa0630730:CDS | 40.0% | |
| AAGTATGACCCAACTAAGCA+TGG | - | chr4_3:12741966-12741985 | Msa0630730:CDS | 40.0% | |
| ATGAGGATCCATGCTTAGTT+GGG | + | chr4_3:12741977-12741996 | None:intergenic | 40.0% | |
| ! | GAAGTATCACCCTATGTTAC+TGG | - | chr4_3:12742014-12742033 | Msa0630730:CDS | 40.0% |
| AGTATCACCCTATGTTACTG+GGG | - | chr4_3:12742016-12742035 | Msa0630730:CDS | 40.0% | |
| CTCTTGGTATGCTGTTGGAA+GGG | + | chr4_3:12738325-12738344 | None:intergenic | 45.0% | |
| ACCTTCCTTCATCACCACAA+TGG | - | chr4_3:12738346-12738365 | Msa0630730:CDS | 45.0% | |
| ATGACAGCATCAACCCTAGT+TGG | - | chr4_3:12738396-12738415 | Msa0630730:CDS | 45.0% | |
| GCATGCTTTGTAGACCAACT+AGG | + | chr4_3:12738413-12738432 | None:intergenic | 45.0% | |
| GCATAGAGGATTACTAGACC+TGG | + | chr4_3:12738435-12738454 | None:intergenic | 45.0% | |
| ! | GGTAAAGGTGCACCTTCATT+AGG | - | chr4_3:12738585-12738604 | Msa0630730:CDS | 45.0% |
| ! | GGATGGCTTTTGTACCTCTT+TGG | - | chr4_3:12738799-12738818 | Msa0630730:intron | 45.0% |
| !! | TGGGGTGTCATTGATTTCTC+TGG | - | chr4_3:12738882-12738901 | Msa0630730:intron | 45.0% |
| !! | GGTGTCATTGATTTCTCTGG+TGG | - | chr4_3:12738885-12738904 | Msa0630730:intron | 45.0% |
| GTGGATTCACTGCAGCTTAT+TGG | - | chr4_3:12738937-12738956 | Msa0630730:intron | 45.0% | |
| CCAGACAGACCCTTAAACTA+AGG | + | chr4_3:12739108-12739127 | None:intergenic | 45.0% | |
| CCTTAGTTTAAGGGTCTGTC+TGG | - | chr4_3:12739105-12739124 | Msa0630730:intron | 45.0% | |
| ! | CTAGTTGAAGATTTTCGGCC+CGG | + | chr4_3:12739328-12739347 | None:intergenic | 45.0% |
| GCCAAGGTTGAAGAGTGATA+GGG | - | chr4_3:12739387-12739406 | Msa0630730:intron | 45.0% | |
| TCCCTATCACTCTTCAACCT+TGG | + | chr4_3:12739391-12739410 | None:intergenic | 45.0% | |
| TAGCAGGTGCAGGATTGTTA+TGG | - | chr4_3:12739443-12739462 | Msa0630730:intron | 45.0% | |
| AGGTGCAGGATTGTTATGGA+TGG | - | chr4_3:12739447-12739466 | Msa0630730:intron | 45.0% | |
| GGTGCAGGATTGTTATGGAT+GGG | - | chr4_3:12739448-12739467 | Msa0630730:intron | 45.0% | |
| CAGGATTGTTATGGATGGGT+TGG | - | chr4_3:12739452-12739471 | Msa0630730:intron | 45.0% | |
| !! | TTGTTATGGATGGGTTGGTC+AGG | - | chr4_3:12739457-12739476 | Msa0630730:intron | 45.0% |
| !! | ATGGGTTGGTCAGGATTCAA+TGG | - | chr4_3:12739466-12739485 | Msa0630730:intron | 45.0% |
| TGAACAGCTCCAATCACTGA+AGG | + | chr4_3:12739607-12739626 | None:intergenic | 45.0% | |
| TTCAGTGATTGGAGCTGTTC+AGG | - | chr4_3:12739606-12739625 | Msa0630730:intron | 45.0% | |
| TCAGTGATTGGAGCTGTTCA+GGG | - | chr4_3:12739607-12739626 | Msa0630730:intron | 45.0% | |
| GTAGAGGATCCTTGTCCATT+TGG | + | chr4_3:12740363-12740382 | None:intergenic | 45.0% | |
| CATTTACTAAGAGGTGGGGT+TGG | - | chr4_3:12740469-12740488 | Msa0630730:intron | 45.0% | |
| TCATGGGCAGCTATAGTGAT+GGG | - | chr4_3:12740516-12740535 | Msa0630730:intron | 45.0% | |
| !! | TATCTGGGAGTATTCCATGG+TGG | - | chr4_3:12740544-12740563 | Msa0630730:intron | 45.0% |
| ! | GAAGAGTTGACTTCTTGTGG+AGG | + | chr4_3:12740581-12740600 | None:intergenic | 45.0% |
| ! | CTTGCTGTGTTGTGTGACTT+GGG | + | chr4_3:12740868-12740887 | None:intergenic | 45.0% |
| CAAGTCACACAACACAGCAA+GGG | - | chr4_3:12740867-12740886 | Msa0630730:CDS | 45.0% | |
| ATCTCTCTCAAACGGTGACA+CGG | - | chr4_3:12741463-12741482 | Msa0630730:CDS | 45.0% | |
| CATGTGTGTGAAACACTCCA+AGG | + | chr4_3:12741647-12741666 | None:intergenic | 45.0% | |
| AGTGTTTCACACACATGCTG+TGG | - | chr4_3:12741650-12741669 | Msa0630730:CDS | 45.0% | |
| TATTGCCGGTGACCAATTCA+AGG | - | chr4_3:12741733-12741752 | Msa0630730:CDS | 45.0% | |
| ATTGCCGGTGACCAATTCAA+GGG | - | chr4_3:12741734-12741753 | Msa0630730:CDS | 45.0% | |
| ATAGAAGGCTCCCCTTGAAT+TGG | + | chr4_3:12741748-12741767 | None:intergenic | 45.0% | |
| AATTCAAGGGGAGCCTTCTA+TGG | - | chr4_3:12741747-12741766 | Msa0630730:CDS | 45.0% | |
| ATTCAAGGGGAGCCTTCTAT+GGG | - | chr4_3:12741748-12741767 | Msa0630730:CDS | 45.0% | |
| ! | TGGCAGCACTTTTCATCACT+GGG | - | chr4_3:12741805-12741824 | Msa0630730:CDS | 45.0% |
| CGAGGAAGCTTATGCACTTT+GGG | - | chr4_3:12741932-12741951 | Msa0630730:CDS | 45.0% | |
| GAGGAAGCTTATGCACTTTG+GGG | - | chr4_3:12741933-12741952 | Msa0630730:CDS | 45.0% | |
| GATGAGGATCCATGCTTAGT+TGG | + | chr4_3:12741978-12741997 | None:intergenic | 45.0% | |
| !!! | TTTATTTATTTTTTTCAAAA+TGG | - | chr4_3:12739924-12739943 | Msa0630730:intron | 5.0% |
| !!! | TTATTTATTTTTTTCAAAAT+GGG | - | chr4_3:12739925-12739944 | Msa0630730:intron | 5.0% |
| GCTCTTGGTATGCTGTTGGA+AGG | + | chr4_3:12738326-12738345 | None:intergenic | 50.0% | |
| AGGTGCTCTTGGTATGCTGT+TGG | + | chr4_3:12738330-12738349 | None:intergenic | 50.0% | |
| !! | GTGATGAAGGAAGGTGCTCT+TGG | + | chr4_3:12738341-12738360 | None:intergenic | 50.0% |
| ! | GCCATTGTGGTGATGAAGGA+AGG | + | chr4_3:12738350-12738369 | None:intergenic | 50.0% |
| ! | GTTGGTCTACAAAGCATGCC+AGG | - | chr4_3:12738414-12738433 | Msa0630730:CDS | 50.0% |
| ! | GGTACTTTTGGGCTACCGTA+TGG | - | chr4_3:12738533-12738552 | Msa0630730:CDS | 50.0% |
| ! | TTGGGCTACCGTATGGCTTT+TGG | - | chr4_3:12738540-12738559 | Msa0630730:CDS | 50.0% |
| GGTGCACCTTTACCCCAAAA+TGG | + | chr4_3:12738579-12738598 | None:intergenic | 50.0% | |
| ! | GGTGCTTTTAGCATATGGGG+TGG | - | chr4_3:12738843-12738862 | Msa0630730:intron | 50.0% |
| ! | GCTTTTAGCATATGGGGTGG+TGG | - | chr4_3:12738846-12738865 | Msa0630730:intron | 50.0% |
| GGCCAAGGTTGAAGAGTGAT+AGG | - | chr4_3:12739386-12739405 | Msa0630730:intron | 50.0% | |
| TTGCTTATGCTAGCAGGTGC+AGG | - | chr4_3:12739433-12739452 | Msa0630730:intron | 50.0% | |
| ! | GGTTGGTCAGGATTCAATGG+TGG | - | chr4_3:12739469-12739488 | Msa0630730:intron | 50.0% |
| ! | CTGCAACTAGTCTCCTAGTG+TGG | - | chr4_3:12739551-12739570 | Msa0630730:intron | 50.0% |
| TCTCCTAGTGTGGACCACTT+TGG | - | chr4_3:12739561-12739580 | Msa0630730:intron | 50.0% | |
| CATCCAAAGTGGTCCACACT+AGG | + | chr4_3:12739567-12739586 | None:intergenic | 50.0% | |
| GCTGTTCAGGGTATGATGAC+AGG | - | chr4_3:12739619-12739638 | Msa0630730:intron | 50.0% | |
| ! | GGACTTGTTTGCATCACTCC+TGG | - | chr4_3:12739640-12739659 | Msa0630730:intron | 50.0% |
| GTCATGGGCAGCTATAGTGA+TGG | - | chr4_3:12740515-12740534 | Msa0630730:intron | 50.0% | |
| AGGACCATCATAGTCCACCA+TGG | + | chr4_3:12740561-12740580 | None:intergenic | 50.0% | |
| ! | CCTTGCTGTGTTGTGTGACT+TGG | + | chr4_3:12740869-12740888 | None:intergenic | 50.0% |
| CCAAGTCACACAACACAGCA+AGG | - | chr4_3:12740866-12740885 | Msa0630730:CDS | 50.0% | |
| ACACAGGTAGATGACACCCT+TGG | - | chr4_3:12741627-12741646 | Msa0630730:CDS | 50.0% | |
| TTTCACACACATGCTGTGGC+CGG | - | chr4_3:12741654-12741673 | Msa0630730:CDS | 50.0% | |
| GTTCTGCTAAGAGACCTGTG+AGG | + | chr4_3:12741695-12741714 | None:intergenic | 50.0% | |
| TTGCCGGTGACCAATTCAAG+GGG | - | chr4_3:12741735-12741754 | Msa0630730:CDS | 50.0% | |
| ! | GTGGCAGCACTTTTCATCAC+TGG | - | chr4_3:12741804-12741823 | Msa0630730:CDS | 50.0% |
| ! | CAGCACTTTTCATCACTGGG+TGG | - | chr4_3:12741808-12741827 | Msa0630730:CDS | 50.0% |
| TGGTCGTTCGACATCCTCAA+GGG | + | chr4_3:12741882-12741901 | None:intergenic | 50.0% | |
| ACTGGCGATGATGCTGTACA+CGG | - | chr4_3:12741909-12741928 | Msa0630730:CDS | 50.0% | |
| GCGAGGAAGCTTATGCACTT+TGG | - | chr4_3:12741931-12741950 | Msa0630730:CDS | 50.0% | |
| !! | GCTTATGCACTTTGGGGTGA+TGG | - | chr4_3:12741939-12741958 | Msa0630730:CDS | 50.0% |
| CCTCTTGCCCCAGTAACATA+GGG | + | chr4_3:12742026-12742045 | None:intergenic | 50.0% | |
| ACCTCTTGCCCCAGTAACAT+AGG | + | chr4_3:12742027-12742046 | None:intergenic | 50.0% | |
| GTTTGCATCACTCCTGGAGC+AGG | - | chr4_3:12739646-12739665 | Msa0630730:intron | 55.0% | |
| CTGTGAGGAGGCCTCCTAAA+AGG | + | chr4_3:12741680-12741699 | None:intergenic | 55.0% | |
| !! | CTTTTAGGAGGCCTCCTCAC+AGG | - | chr4_3:12741678-12741697 | Msa0630730:CDS | 55.0% |
| CTGCTAAGAGACCTGTGAGG+AGG | + | chr4_3:12741692-12741711 | None:intergenic | 55.0% | |
| GCTCCCCTTGAATTGGTCAC+CGG | + | chr4_3:12741741-12741760 | None:intergenic | 55.0% | |
| CTGGTCGTTCGACATCCTCA+AGG | + | chr4_3:12741883-12741902 | None:intergenic | 55.0% | |
| CCCTATGTTACTGGGGCAAG+AGG | - | chr4_3:12742023-12742042 | Msa0630730:CDS | 55.0% | |
| !! | GAGGTGGGGTTGGTTGCAAC+TGG | - | chr4_3:12740479-12740498 | Msa0630730:intron | 60.0% |
| !! | TGGGGTTGGTTGCAACTGGC+AGG | - | chr4_3:12740483-12740502 | Msa0630730:intron | 60.0% |
| !! | GGGGTTGGTTGCAACTGGCA+GGG | - | chr4_3:12740484-12740503 | Msa0630730:intron | 60.0% |
| TGGCAGGGCTTGTGCAGTCA+TGG | - | chr4_3:12740499-12740518 | Msa0630730:intron | 60.0% | |
| GGCAGGGCTTGTGCAGTCAT+GGG | - | chr4_3:12740500-12740519 | Msa0630730:intron | 60.0% | |
| ! | CATGCTGTGGCCGGCCTTTT+AGG | - | chr4_3:12741663-12741682 | Msa0630730:CDS | 60.0% |
| GAGGAGGCCTCCTAAAAGGC+CGG | + | chr4_3:12741676-12741695 | None:intergenic | 60.0% | |
| AGGGGAGCCTTCTATGGGCA+TGG | - | chr4_3:12741753-12741772 | Msa0630730:CDS | 60.0% | |
| GGAGCCTTCTATGGGCATGG+CGG | - | chr4_3:12741756-12741775 | Msa0630730:CDS | 60.0% | |
| TCGAACGACCAGCTCGAGAC+TGG | - | chr4_3:12741891-12741910 | Msa0630730:CDS | 60.0% | |
| CATCATCGCCAGTCTCGAGC+TGG | + | chr4_3:12741902-12741921 | None:intergenic | 60.0% | |
| CGATGATGCTGTACACGGCG+AGG | - | chr4_3:12741914-12741933 | Msa0630730:CDS | 60.0% | |
| ! | GCTGTGGCCGGCCTTTTAGG+AGG | - | chr4_3:12741666-12741685 | Msa0630730:CDS | 65.0% |
| GCCTTCTATGGGCATGGCGG+CGG | - | chr4_3:12741759-12741778 | Msa0630730:CDS | 65.0% | |
| GCCGCCGCCATGCCCATAGA+AGG | + | chr4_3:12741763-12741782 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 12738318 | 12742064 | 12738318 | ID=Msa0630730;Name=Msa0630730 |
| chr4_3 | mRNA | 12738318 | 12742064 | 12738318 | ID=Msa0630730-mRNA-1;Parent=Msa0630730;Name=Msa0630730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|4|0|487 |
| chr4_3 | exon | 12741423 | 12742064 | 12741423 | ID=Msa0630730-mRNA-1:exon:3739;Parent=Msa0630730-mRNA-1 |
| chr4_3 | exon | 12740715 | 12741000 | 12740715 | ID=Msa0630730-mRNA-1:exon:3738;Parent=Msa0630730-mRNA-1 |
| chr4_3 | exon | 12739774 | 12739877 | 12739774 | ID=Msa0630730-mRNA-1:exon:3737;Parent=Msa0630730-mRNA-1 |
| chr4_3 | exon | 12738318 | 12738749 | 12738318 | ID=Msa0630730-mRNA-1:exon:3736;Parent=Msa0630730-mRNA-1 |
| chr4_3 | CDS | 12741423 | 12742064 | 12741423 | ID=Msa0630730-mRNA-1:cds;Parent=Msa0630730-mRNA-1 |
| chr4_3 | CDS | 12740715 | 12741000 | 12740715 | ID=Msa0630730-mRNA-1:cds;Parent=Msa0630730-mRNA-1 |
| chr4_3 | CDS | 12739774 | 12739877 | 12739774 | ID=Msa0630730-mRNA-1:cds;Parent=Msa0630730-mRNA-1 |
| chr4_3 | CDS | 12738318 | 12738749 | 12738318 | ID=Msa0630730-mRNA-1:cds;Parent=Msa0630730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
