Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668880 | XP_013454883.1 | 99.384 | 487 | 3 | 0 | 1 | 487 | 1 | 487 | 0.0 | 978 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668880 | sp|Q84KJ6|AMT31_ORYSJ | 70.528 | 492 | 139 | 2 | 2 | 487 | 7 | 498 | 0.0 | 709 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668880 | A0A072UHP1 | 99.384 | 487 | 3 | 0 | 1 | 487 | 1 | 487 | 0.0 | 978 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0630730 | Msa0668880 | 0.996562 | 3.806774e-229 | -8.615850e-47 |
| Msa0534150 | Msa0668880 | 0.871180 | 8.318480e-67 | -8.615850e-47 |
| Msa0590150 | Msa0668880 | 0.929689 | 4.842444e-93 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668880 | MtrunA17_Chr7g0243071 | 84.631 | 488 | 73 | 2 | 1 | 487 | 1 | 487 | 0.0 | 809 |
| Msa0668880 | MtrunA17_Chr8g0385081 | 71.186 | 472 | 130 | 2 | 2 | 467 | 8 | 479 | 0.0 | 649 |
| Msa0668880 | MtrunA17_Chr4g0007621 | 99.678 | 311 | 1 | 0 | 1 | 311 | 1 | 311 | 0.0 | 630 |
| Msa0668880 | MtrunA17_Chr1g0163571 | 61.728 | 486 | 157 | 6 | 12 | 487 | 14 | 480 | 0.0 | 568 |
| Msa0668880 | MtrunA17_Chr7g0274111 | 54.082 | 490 | 189 | 8 | 1 | 475 | 1 | 469 | 0.0 | 515 |
| Msa0668880 | MtrunA17_Chr8g0371171 | 57.299 | 274 | 103 | 5 | 215 | 481 | 37 | 303 | 3.13e-102 | 308 |
| Msa0668880 | MtrunA17_Chr4g0007611 | 96.575 | 146 | 5 | 0 | 342 | 487 | 7 | 152 | 1.93e-96 | 288 |
| Msa0668880 | MtrunA17_Chr8g0371161 | 59.633 | 218 | 63 | 4 | 5 | 215 | 6 | 205 | 2.42e-74 | 233 |
| Msa0668880 | MtrunA17_Chr1g0168631 | 27.593 | 482 | 278 | 17 | 22 | 466 | 48 | 495 | 5.11e-24 | 105 |
| Msa0668880 | MtrunA17_Chr1g0189971 | 27.254 | 477 | 278 | 17 | 22 | 463 | 47 | 489 | 5.70e-22 | 99.0 |
| Msa0668880 | MtrunA17_Chr7g0262361 | 25.157 | 477 | 286 | 15 | 22 | 463 | 47 | 487 | 7.80e-17 | 82.8 |
| Msa0668880 | MtrunA17_Chr3g0104661 | 23.577 | 492 | 284 | 14 | 23 | 470 | 14 | 457 | 7.16e-16 | 79.7 |
| Msa0668880 | MtrunA17_Chr7g0272721 | 25.625 | 480 | 276 | 18 | 22 | 461 | 47 | 485 | 8.33e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668880 | AT2G38290.1 | 73.085 | 483 | 118 | 2 | 6 | 487 | 4 | 475 | 0.0 | 707 |
| Msa0668880 | AT2G38290.2 | 76.045 | 359 | 85 | 1 | 130 | 487 | 1 | 359 | 0.0 | 542 |
| Msa0668880 | AT1G64780.1 | 25.764 | 458 | 281 | 12 | 22 | 449 | 52 | 480 | 3.69e-23 | 102 |
| Msa0668880 | AT4G13510.1 | 26.427 | 473 | 281 | 14 | 22 | 461 | 42 | 480 | 3.94e-23 | 102 |
| Msa0668880 | AT3G24300.1 | 26.446 | 484 | 273 | 17 | 22 | 464 | 46 | 487 | 2.74e-22 | 100 |
| Msa0668880 | AT3G24290.1 | 26.247 | 461 | 270 | 12 | 22 | 448 | 46 | 470 | 1.67e-20 | 94.7 |
| Msa0668880 | AT4G28700.1 | 26.681 | 461 | 271 | 14 | 22 | 448 | 51 | 478 | 1.08e-19 | 92.4 |
Find 129 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATCTGACTCATAAATTTA+TGG | 0.137091 | 4_4:+10186762 | None:intergenic |
| ATTAATATGTTGGGTACTTT+TGG | 0.193601 | 4_4:-10190292 | Msa0668880:CDS |
| GTGGATTCACTGCAGCTTAT+TGG | 0.194340 | 4_4:-10189876 | Msa0668880:CDS |
| TATGTTATTCATCTTTCTTC+TGG | 0.220707 | 4_4:-10189904 | Msa0668880:CDS |
| TTGAAGAAATGAGTGCTTTC+AGG | 0.220872 | 4_4:+10190174 | None:intergenic |
| TTCAGTGATTGGAGCTGTTC+AGG | 0.233610 | 4_4:-10189207 | Msa0668880:CDS |
| ACTTTGGATGTTGCTTTCTT+TGG | 0.270509 | 4_4:-10189236 | Msa0668880:CDS |
| AATTCAAGGGGAGCCTTCTA+TGG | 0.272145 | 4_4:-10187066 | Msa0668880:CDS |
| ATTCATCTTTCTTCTGGAAT+TGG | 0.280645 | 4_4:-10189898 | Msa0668880:CDS |
| CGAGGAAGCTTATGCACTTT+GGG | 0.285767 | 4_4:-10186881 | Msa0668880:CDS |
| TTGGGCTACCGTATGGCTTT+TGG | 0.309076 | 4_4:-10190273 | Msa0668880:CDS |
| TGGATTCACTGCAGCTTATT+GGG | 0.318741 | 4_4:-10189875 | Msa0668880:intron |
| GGCTATGAATTCAGCTTTCA+TGG | 0.322861 | 4_4:-10190337 | Msa0668880:CDS |
| GAAGTATCACCCTATGTTAC+TGG | 0.331682 | 4_4:-10186799 | Msa0668880:CDS |
| CTGTGAGGAGGCCTCCTAAA+AGG | 0.337602 | 4_4:+10187136 | None:intergenic |
| TTTGGTAAGCCTTCAGTGAT+TGG | 0.339494 | 4_4:-10189218 | Msa0668880:CDS |
| AGCATAAGCAATACATTGTT+TGG | 0.347245 | 4_4:+10189392 | None:intergenic |
| TTCTTGGAAGAATGAACATT+AGG | 0.357541 | 4_4:-10190041 | Msa0668880:CDS |
| TTGTTAGCTGGATCTGTTCT+TGG | 0.363722 | 4_4:-10190057 | Msa0668880:CDS |
| GGTGCACCTTTACCCCAAAA+TGG | 0.368640 | 4_4:+10190237 | None:intergenic |
| ATAGTGATGGGAATACTATC+TGG | 0.375245 | 4_4:-10188285 | Msa0668880:CDS |
| GGTAAAGGTGCACCTTCATT+AGG | 0.379029 | 4_4:-10190228 | Msa0668880:CDS |
| TAATAGCAGCAAAATTGAAT+TGG | 0.388241 | 4_4:+10190088 | None:intergenic |
| TCTTGGAAGAATGAACATTA+GGG | 0.392076 | 4_4:-10190040 | Msa0668880:CDS |
| GCCGCCGCCATGCCCATAGA+AGG | 0.393092 | 4_4:+10187053 | None:intergenic |
| TGGGGTGTCATTGATTTCTC+TGG | 0.400224 | 4_4:-10189931 | Msa0668880:CDS |
| TTGTTATGGATGGGTTGGTC+AGG | 0.408273 | 4_4:-10189356 | Msa0668880:CDS |
| TGCATCAGTATTAATATGTT+GGG | 0.408318 | 4_4:-10190301 | Msa0668880:CDS |
| CATCTTTCTTCTGGAATTGG+TGG | 0.415049 | 4_4:-10189895 | Msa0668880:CDS |
| ATAGAAGGCTCCCCTTGAAT+TGG | 0.424952 | 4_4:+10187068 | None:intergenic |
| GCCTTCTATGGGCATGGCGG+CGG | 0.425599 | 4_4:-10187054 | Msa0668880:CDS |
| ATGCATCAGTATTAATATGT+TGG | 0.430917 | 4_4:-10190302 | Msa0668880:CDS |
| GCTTATGCACTTTGGGGTGA+TGG | 0.431224 | 4_4:-10186874 | Msa0668880:CDS |
| GTTTGCATCACTCCTGGAGC+AGG | 0.433827 | 4_4:-10189167 | Msa0668880:intron |
| TCAGTGATTGGAGCTGTTCA+GGG | 0.436259 | 4_4:-10189206 | Msa0668880:CDS |
| GCGAGGAAGCTTATGCACTT+TGG | 0.438004 | 4_4:-10186882 | Msa0668880:CDS |
| GATGAGGATCCATGCTTAGT+TGG | 0.439794 | 4_4:+10186838 | None:intergenic |
| ATGAGGATCCATGCTTAGTT+GGG | 0.442073 | 4_4:+10186839 | None:intergenic |
| TCAGTTCTTGAAGCAATTAG+TGG | 0.444371 | 4_4:-10187028 | Msa0668880:CDS |
| GGCCAAGGTTGAAGAGTGAT+AGG | 0.447646 | 4_4:-10189427 | Msa0668880:CDS |
| TGGCAGGGCTTGTGCAGTCA+TGG | 0.448163 | 4_4:-10188314 | Msa0668880:intron |
| GAAGAATGAACATTAGGGCT+TGG | 0.448442 | 4_4:-10190035 | Msa0668880:CDS |
| AGCACTCATTTCTTCAAGAA+TGG | 0.450618 | 4_4:-10190168 | Msa0668880:CDS |
| TCTTTGCAGACTCATATTGC+CGG | 0.453439 | 4_4:-10187094 | Msa0668880:CDS |
| TCCCTATCACTCTTCAACCT+TGG | 0.457019 | 4_4:+10189425 | None:intergenic |
| GGACTTGTTTGCATCACTCC+TGG | 0.458843 | 4_4:-10189173 | Msa0668880:CDS |
| GAAGTCAACTCTTCTACAAA+AGG | 0.471992 | 4_4:-10188226 | Msa0668880:intron |
| TCGAACGACCAGCTCGAGAC+TGG | 0.475810 | 4_4:-10186922 | Msa0668880:CDS |
| CAGGATTGTTATGGATGGGT+TGG | 0.479032 | 4_4:-10189361 | Msa0668880:CDS |
| TTGCTTATGCTAGCAGGTGC+AGG | 0.486246 | 4_4:-10189380 | Msa0668880:CDS |
| GAGTCAATGTTTGCTGCATA+TGG | 0.486969 | 4_4:+10189317 | None:intergenic |
| GCATGCTTTGTAGACCAACT+AGG | 0.489380 | 4_4:+10190403 | None:intergenic |
| AATGAACATTAGGGCTTGGA+TGG | 0.496494 | 4_4:-10190031 | Msa0668880:CDS |
| TCTCCTAGTGTGGACCACTT+TGG | 0.497317 | 4_4:-10189252 | Msa0668880:CDS |
| AATGTATTGCTTATGCTAGC+AGG | 0.508189 | 4_4:-10189386 | Msa0668880:CDS |
| GTAGAAGAGTTGACTTCTTG+TGG | 0.508479 | 4_4:+10188232 | None:intergenic |
| GTTGGTCTACAAAGCATGCC+AGG | 0.511038 | 4_4:-10190399 | Msa0668880:CDS |
| TATTGCCGGTGACCAATTCA+AGG | 0.517642 | 4_4:-10187080 | Msa0668880:CDS |
| GGCAGGGCTTGTGCAGTCAT+GGG | 0.521391 | 4_4:-10188313 | Msa0668880:intron |
| AATATGAGTCTGCAAAGATC+TGG | 0.521520 | 4_4:+10187099 | None:intergenic |
| TAGCAGGTGCAGGATTGTTA+TGG | 0.525281 | 4_4:-10189370 | Msa0668880:CDS |
| TTTATAGACAAACCTGCTCC+AGG | 0.525389 | 4_4:+10189155 | None:intergenic |
| ACCTCTTGCCCCAGTAACAT+AGG | 0.525904 | 4_4:+10186789 | None:intergenic |
| ATGGGTTGGTCAGGATTCAA+TGG | 0.526672 | 4_4:-10189347 | Msa0668880:CDS |
| AGGTGCAGGATTGTTATGGA+TGG | 0.529331 | 4_4:-10189366 | Msa0668880:CDS |
| TCTCCTTTGTTTAGCCATTG+TGG | 0.531344 | 4_4:+10190453 | None:intergenic |
| CCCTATGTTACTGGGGCAAG+AGG | 0.535754 | 4_4:-10186790 | Msa0668880:CDS |
| ATGACAGCATCAACCCTAGT+TGG | 0.538896 | 4_4:-10190417 | Msa0668880:CDS |
| AAGTATCACCCTATGTTACT+GGG | 0.541502 | 4_4:-10186798 | Msa0668880:CDS |
| TTTAGCCATTGTGGTGATGA+AGG | 0.544202 | 4_4:+10190462 | None:intergenic |
| CATCCAAAGTGGTCCACACT+AGG | 0.544890 | 4_4:+10189249 | None:intergenic |
| TATTCCATGGTGGACTATGA+TGG | 0.546570 | 4_4:-10188259 | Msa0668880:CDS |
| CATGCTTTGTAGACCAACTA+GGG | 0.550313 | 4_4:+10190404 | None:intergenic |
| TAAGAGAAAATGAGCCAAAG+AGG | 0.550720 | 4_4:+10190000 | None:intergenic |
| TAAGCAATACATTGTTTGGT+GGG | 0.551524 | 4_4:+10189396 | None:intergenic |
| TTTCACACACATGCTGTGGC+CGG | 0.552024 | 4_4:-10187159 | Msa0668880:CDS |
| GGTGTCATTGATTTCTCTGG+TGG | 0.552125 | 4_4:-10189928 | Msa0668880:CDS |
| TAGTGATGGGAATACTATCT+GGG | 0.552494 | 4_4:-10188284 | Msa0668880:CDS |
| AAGTATGACCCAACTAAGCA+TGG | 0.559295 | 4_4:-10186847 | Msa0668880:CDS |
| GCTCTTGGTATGCTGTTGGA+AGG | 0.561258 | 4_4:+10190490 | None:intergenic |
| GCTGTTCAGGGTATGATGAC+AGG | 0.562744 | 4_4:-10189194 | Msa0668880:CDS |
| GTGATGAAGGAAGGTGCTCT+TGG | 0.563434 | 4_4:+10190475 | None:intergenic |
| TACTATCTGGGAGTATTCCA+TGG | 0.563931 | 4_4:-10188272 | Msa0668880:CDS |
| ATTCAAGGGGAGCCTTCTAT+GGG | 0.564319 | 4_4:-10187065 | Msa0668880:CDS |
| ATAAGCAATACATTGTTTGG+TGG | 0.568631 | 4_4:+10189395 | None:intergenic |
| GAAGAGAAGAATTAGTGTGG+TGG | 0.570040 | 4_4:+10186972 | None:intergenic |
| CTCTTGGTATGCTGTTGGAA+GGG | 0.571295 | 4_4:+10190491 | None:intergenic |
| CTGGTCGTTCGACATCCTCA+AGG | 0.571654 | 4_4:+10186933 | None:intergenic |
| AGGTGCTCTTGGTATGCTGT+TGG | 0.575427 | 4_4:+10190486 | None:intergenic |
| CATCATCGCCAGTCTCGAGC+TGG | 0.582123 | 4_4:+10186914 | None:intergenic |
| TCATGGGCAGCTATAGTGAT+GGG | 0.585092 | 4_4:-10188297 | Msa0668880:CDS |
| AGGGGAGCCTTCTATGGGCA+TGG | 0.589588 | 4_4:-10187060 | Msa0668880:CDS |
| CTGCAACTAGTCTCCTAGTG+TGG | 0.595858 | 4_4:-10189262 | Msa0668880:CDS |
| GTCATGGGCAGCTATAGTGA+TGG | 0.598047 | 4_4:-10188298 | Msa0668880:CDS |
| GCTCCCCTTGAATTGGTCAC+CGG | 0.599961 | 4_4:+10187075 | None:intergenic |
| GTTCATCACCAAAAGCCATA+CGG | 0.600057 | 4_4:+10190265 | None:intergenic |
| ACACAGGTAGATGACACCCT+TGG | 0.601482 | 4_4:-10187186 | Msa0668880:intron |
| GAGGAGGCCTCCTAAAAGGC+CGG | 0.601994 | 4_4:+10187140 | None:intergenic |
| CCTCTTGCCCCAGTAACATA+GGG | 0.604247 | 4_4:+10186790 | None:intergenic |
| GAGGAAGCTTATGCACTTTG+GGG | 0.606601 | 4_4:-10186880 | Msa0668880:CDS |
| GGAGCCTTCTATGGGCATGG+CGG | 0.613135 | 4_4:-10187057 | Msa0668880:CDS |
| AAATAAACTAGTGAAGCCAT+AGG | 0.614906 | 4_4:+10190111 | None:intergenic |
| GCCATTGTGGTGATGAAGGA+AGG | 0.619330 | 4_4:+10190466 | None:intergenic |
| AGTAATCCTCTATGCAAGCA+TGG | 0.627678 | 4_4:-10190373 | Msa0668880:CDS |
| ATTGCCGGTGACCAATTCAA+GGG | 0.630938 | 4_4:-10187079 | Msa0668880:CDS |
| GCCAAGGTTGAAGAGTGATA+GGG | 0.631315 | 4_4:-10189426 | Msa0668880:CDS |
| AAAGAAAGCAACATCCAAAG+TGG | 0.635054 | 4_4:+10189238 | None:intergenic |
| TAAACAAAGGAGACAACTCA+TGG | 0.635470 | 4_4:-10190443 | Msa0668880:CDS |
| TATGAAGAGAAGAATTAGTG+TGG | 0.639971 | 4_4:+10186969 | None:intergenic |
| TACAACTGTTCATACCCTTG+AGG | 0.646650 | 4_4:-10186948 | Msa0668880:CDS |
| TGGTCGTTCGACATCCTCAA+GGG | 0.648802 | 4_4:+10186934 | None:intergenic |
| TGAACAGCTCCAATCACTGA+AGG | 0.650438 | 4_4:+10189209 | None:intergenic |
| CTGCTAAGAGACCTGTGAGG+AGG | 0.651843 | 4_4:+10187124 | None:intergenic |
| GGTGCAGGATTGTTATGGAT+GGG | 0.652332 | 4_4:-10189365 | Msa0668880:CDS |
| GCATAGAGGATTACTAGACC+TGG | 0.653060 | 4_4:+10190381 | None:intergenic |
| TCACCACAATGGCTAAACAA+AGG | 0.669086 | 4_4:-10190456 | Msa0668880:CDS |
| GGTTGGTCAGGATTCAATGG+TGG | 0.669155 | 4_4:-10189344 | Msa0668880:CDS |
| ACTGGCGATGATGCTGTACA+CGG | 0.672487 | 4_4:-10186904 | Msa0668880:CDS |
| CGATGATGCTGTACACGGCG+AGG | 0.679210 | 4_4:-10186899 | Msa0668880:CDS |
| ACCTTCCTTCATCACCACAA+TGG | 0.681471 | 4_4:-10190467 | Msa0668880:CDS |
| AGTGTTTCACACACATGCTG+TGG | 0.682031 | 4_4:-10187163 | Msa0668880:CDS |
| GAAGAGTTGACTTCTTGTGG+AGG | 0.685329 | 4_4:+10188235 | None:intergenic |
| TTGCCGGTGACCAATTCAAG+GGG | 0.686365 | 4_4:-10187078 | Msa0668880:CDS |
| ATGTGTGTGAAACACTCCAA+GGG | 0.695193 | 4_4:+10187170 | None:intergenic |
| AGGACCATCATAGTCCACCA+TGG | 0.707593 | 4_4:+10188255 | None:intergenic |
| AGTATCACCCTATGTTACTG+GGG | 0.715721 | 4_4:-10186797 | Msa0668880:CDS |
| CATGTGTGTGAAACACTCCA+AGG | 0.722123 | 4_4:+10187169 | None:intergenic |
| TATCTGGGAGTATTCCATGG+TGG | 0.732232 | 4_4:-10188269 | Msa0668880:CDS |
| GTTCTGCTAAGAGACCTGTG+AGG | 0.819277 | 4_4:+10187121 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAATAATATTACTATTTTA+GGG | + | chr4_4:10188497-10188516 | None:intergenic | 10.0% |
| !!! | GTATTTTATATTTTAGAATT+TGG | - | chr4_4:10189362-10189381 | Msa0668880:CDS | 10.0% |
| !!! | TTGTTTTTCATTTTATTTTT+TGG | + | chr4_4:10189528-10189547 | None:intergenic | 10.0% |
| !!! | GTATTATATATTTTAGAATT+TGG | - | chr4_4:10189569-10189588 | Msa0668880:intron | 10.0% |
| !! | AATGATTAAATAATTACAAA+AGG | - | chr4_4:10189773-10189792 | Msa0668880:intron | 10.0% |
| !! | TATATAGTTAATTCATATAA+TGG | + | chr4_4:10190055-10190074 | None:intergenic | 10.0% |
| !!! | AATTTTGTTTGTTTTTTTCT+AGG | - | chr4_4:10187813-10187832 | Msa0668880:intron | 15.0% |
| !!! | CACAATAATATTACTATTTT+AGG | + | chr4_4:10188498-10188517 | None:intergenic | 15.0% |
| !!! | ACATTAATGTTACTATTTTA+GGG | + | chr4_4:10188542-10188561 | None:intergenic | 15.0% |
| !!! | AGTAATATCATTTAAACTTT+TGG | - | chr4_4:10188649-10188668 | Msa0668880:intron | 15.0% |
| !!! | ACTTCAAACATAATTTTTAA+GGG | + | chr4_4:10188700-10188719 | None:intergenic | 15.0% |
| !!! | AACTTCAAACATAATTTTTA+AGG | + | chr4_4:10188701-10188720 | None:intergenic | 15.0% |
| !! | AAAGATGTTATAGTATATAT+TGG | - | chr4_4:10188899-10188918 | Msa0668880:intron | 15.0% |
| !! | AGAATCAAATTATCTAATTA+AGG | + | chr4_4:10189120-10189139 | None:intergenic | 15.0% |
| !! | TATAATTCAATTGATAGATA+CGG | - | chr4_4:10189431-10189450 | Msa0668880:CDS | 15.0% |
| !! | AAATTATTAAGGAAAAAAAG+TGG | + | chr4_4:10189660-10189679 | None:intergenic | 15.0% |
| !! | GCTCAAAAATAAAATTATTA+AGG | + | chr4_4:10189671-10189690 | None:intergenic | 15.0% |
| !! | TTTGTCAAAAAAAAATTACA+AGG | + | chr4_4:10189725-10189744 | None:intergenic | 15.0% |
| !! | TACAAAAGGATATTATTTAT+TGG | - | chr4_4:10189787-10189806 | Msa0668880:intron | 15.0% |
| !! | ACAAAAGGATATTATTTATT+GGG | - | chr4_4:10189788-10189807 | Msa0668880:intron | 15.0% |
| !!! | TATCTTTTTTATAAATGAAG+AGG | + | chr4_4:10189821-10189840 | None:intergenic | 15.0% |
| !!! | AGTGAATTTATCATAGTTTT+TGG | - | chr4_4:10187436-10187455 | Msa0668880:intron | 20.0% |
| !!! | ATTAAGTTGTTTATCAAAAC+CGG | - | chr4_4:10187759-10187778 | Msa0668880:intron | 20.0% |
| !!! | TAATTCTAGTTGAAGATTTT+CGG | + | chr4_4:10187786-10187805 | None:intergenic | 20.0% |
| !! | AAAAACAAACAAAATTGACT+AGG | + | chr4_4:10187809-10187828 | None:intergenic | 20.0% |
| !! | CATAATCAATAATTGATCAT+AGG | + | chr4_4:10188159-10188178 | None:intergenic | 20.0% |
| !! | TATTATTGTTGGTATTATGT+TGG | - | chr4_4:10188407-10188426 | Msa0668880:intron | 20.0% |
| !! | TTATTAGGTGAAATAATAAG+AGG | + | chr4_4:10188454-10188473 | None:intergenic | 20.0% |
| !! | GAATCAGATGTATATTTATT+AGG | + | chr4_4:10188469-10188488 | None:intergenic | 20.0% |
| !!! | ATTAATGTTACTATTTTAGG+GGG | + | chr4_4:10188540-10188559 | None:intergenic | 20.0% |
| !!! | CATTAATGTTACTATTTTAG+GGG | + | chr4_4:10188541-10188560 | None:intergenic | 20.0% |
| !!! | CACATTAATGTTACTATTTT+AGG | + | chr4_4:10188543-10188562 | None:intergenic | 20.0% |
| !! | ATCAAATTATCTAATTAAGG+TGG | + | chr4_4:10189117-10189136 | None:intergenic | 20.0% |
| !! | TAGATAATTTGATTCTTTAG+TGG | - | chr4_4:10189124-10189143 | Msa0668880:intron | 20.0% |
| !!! | GGTTGATAATATTTATTTGA+TGG | - | chr4_4:10189236-10189255 | Msa0668880:CDS | 20.0% |
| !!! | TTGTGATATTTTGTTATTCT+TGG | - | chr4_4:10189267-10189286 | Msa0668880:CDS | 20.0% |
| !!! | TATTTTTTGGACAAATAGTT+TGG | + | chr4_4:10189515-10189534 | None:intergenic | 20.0% |
| !! | GTAAGATTTGATATTTGATA+TGG | + | chr4_4:10189628-10189647 | None:intergenic | 20.0% |
| !! | TAGTTAATTCATATAATGGT+AGG | + | chr4_4:10190051-10190070 | None:intergenic | 20.0% |
| !! | TTAACTATATACAATAACAC+AGG | - | chr4_4:10190064-10190083 | Msa0668880:CDS | 20.0% |
| ! | ATGCATCAGTATTAATATGT+TGG | - | chr4_4:10186964-10186983 | Msa0668880:CDS | 25.0% |
| ! | TGCATCAGTATTAATATGTT+GGG | - | chr4_4:10186965-10186984 | Msa0668880:CDS | 25.0% |
| !! | ATTAATATGTTGGGTACTTT+TGG | - | chr4_4:10186974-10186993 | Msa0668880:CDS | 25.0% |
| !! | TTAATATGTTGGGTACTTTT+GGG | - | chr4_4:10186975-10186994 | Msa0668880:CDS | 25.0% |
| !!! | TGATGAACTTTTTCCATTTT+GGG | - | chr4_4:10187016-10187035 | Msa0668880:CDS | 25.0% |
| !! | AGAAATTTTTGACCTAATGA+AGG | + | chr4_4:10187053-10187072 | None:intergenic | 25.0% |
| ! | TAATAGCAGCAAAATTGAAT+TGG | + | chr4_4:10187181-10187200 | None:intergenic | 25.0% |
| !!! | ATTACTGTTATTTTGTTAGC+TGG | - | chr4_4:10187197-10187216 | Msa0668880:intron | 25.0% |
| ! | TATGTTATTCATCTTTCTTC+TGG | - | chr4_4:10187362-10187381 | Msa0668880:intron | 25.0% |
| ! | AGAAGTAGTTTACATACATA+AGG | - | chr4_4:10187703-10187722 | Msa0668880:intron | 25.0% |
| ! | ATTGTACGCTTATAACATAA+CGG | + | chr4_4:10187741-10187760 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCAAAACC+GGG | - | chr4_4:10187760-10187779 | Msa0668880:intron | 25.0% |
| !!! | TTGTTTGTTTTTTTCTAGGT+TGG | - | chr4_4:10187817-10187836 | Msa0668880:intron | 25.0% |
| !!! | TGTTTGTTTTTTTCTAGGTT+GGG | - | chr4_4:10187818-10187837 | Msa0668880:intron | 25.0% |
| !!! | TTAATGTTACTATTTTAGGG+GGG | + | chr4_4:10188539-10188558 | None:intergenic | 25.0% |
| ! | TGATATTACTCACATGTAAT+TGG | + | chr4_4:10188639-10188658 | None:intergenic | 25.0% |
| ! | GTAATGAAGAGTTGTTATAT+TGG | - | chr4_4:10188763-10188782 | Msa0668880:intron | 25.0% |
| ! | ATTAGATTAGATGTACCAAA+TGG | - | chr4_4:10188798-10188817 | Msa0668880:intron | 25.0% |
| ! | GATAATGATGTTGAAAATGA+AGG | - | chr4_4:10188874-10188893 | Msa0668880:intron | 25.0% |
| ! | ATATATTGGCATTTACTAAG+AGG | - | chr4_4:10188913-10188932 | Msa0668880:intron | 25.0% |
| ! | TCATTACAATCAACATTACA+AGG | + | chr4_4:10189758-10189777 | None:intergenic | 25.0% |
| !!! | TTGTTTTTATCTCTCTCAAA+CGG | - | chr4_4:10189908-10189927 | Msa0668880:CDS | 25.0% |
| AAGCATGGTCAAAAAGAAAT+GGG | - | chr4_4:10186908-10186927 | Msa0668880:CDS | 30.0% | |
| !! | GTGATGAACTTTTTCCATTT+TGG | - | chr4_4:10187015-10187034 | Msa0668880:CDS | 30.0% |
| !! | GATGAACTTTTTCCATTTTG+GGG | - | chr4_4:10187017-10187036 | Msa0668880:CDS | 30.0% |
| AAATAAACTAGTGAAGCCAT+AGG | + | chr4_4:10187158-10187177 | None:intergenic | 30.0% | |
| TTCTTGGAAGAATGAACATT+AGG | - | chr4_4:10187225-10187244 | Msa0668880:intron | 30.0% | |
| TCTTGGAAGAATGAACATTA+GGG | - | chr4_4:10187226-10187245 | Msa0668880:intron | 30.0% | |
| !!! | TGGTGGATTTTTGTATCATT+GGG | - | chr4_4:10187316-10187335 | Msa0668880:intron | 30.0% |
| !! | ATTCATCTTTCTTCTGGAAT+TGG | - | chr4_4:10187368-10187387 | Msa0668880:intron | 30.0% |
| ! | AATATGCAAGTTTTTCTGTC+AGG | + | chr4_4:10187606-10187625 | None:intergenic | 30.0% |
| ACATACATAAGGACTTGATA+CGG | - | chr4_4:10187714-10187733 | Msa0668880:intron | 30.0% | |
| TAAGCAATACATTGTTTGGT+GGG | + | chr4_4:10187873-10187892 | None:intergenic | 30.0% | |
| ATAAGCAATACATTGTTTGG+TGG | + | chr4_4:10187874-10187893 | None:intergenic | 30.0% | |
| AGCATAAGCAATACATTGTT+TGG | + | chr4_4:10187877-10187896 | None:intergenic | 30.0% | |
| CAATAAAGATTGAATCTCAG+TGG | - | chr4_4:10188212-10188231 | Msa0668880:intron | 30.0% | |
| !! | ATGGGAAGTGTTATTATTGT+TGG | - | chr4_4:10188396-10188415 | Msa0668880:intron | 30.0% |
| TATTGTTGGTATTATGTTGG+AGG | - | chr4_4:10188410-10188429 | Msa0668880:intron | 30.0% | |
| !! | ACTAAAGTTTTGACATGAAG+TGG | - | chr4_4:10188563-10188582 | Msa0668880:intron | 30.0% |
| TCCTCTACTTAAGTAACTTT+AGG | - | chr4_4:10188828-10188847 | Msa0668880:intron | 30.0% | |
| ACCTAAAGTTACTTAAGTAG+AGG | + | chr4_4:10188832-10188851 | None:intergenic | 30.0% | |
| ! | GGTGGATTCTTAAAATAAAG+AGG | + | chr4_4:10189099-10189118 | None:intergenic | 30.0% |
| GGATCTATAGAATATTCCAA+CGG | - | chr4_4:10189145-10189164 | Msa0668880:intron | 30.0% | |
| ! | TAGAATATTCCAACGGTTTT+TGG | - | chr4_4:10189152-10189171 | Msa0668880:intron | 30.0% |
| TGGCTAAATTTCACTTGTAA+GGG | + | chr4_4:10189492-10189511 | None:intergenic | 30.0% | |
| ! | TTTTTGGACAAATAGTTTGG+TGG | + | chr4_4:10189512-10189531 | None:intergenic | 30.0% |
| ! | TGTCCATGCAATTTGTTTAT+AGG | - | chr4_4:10189988-10190007 | Msa0668880:CDS | 30.0% |
| TATGAAGAGAAGAATTAGTG+TGG | + | chr4_4:10190300-10190319 | None:intergenic | 30.0% | |
| !! | AATTTCATCTGCTTTTGATG+AGG | + | chr4_4:10190447-10190466 | None:intergenic | 30.0% |
| TAAACAAAGGAGACAACTCA+TGG | - | chr4_4:10186823-10186842 | Msa0668880:CDS | 35.0% | |
| CAAGCATGGTCAAAAAGAAA+TGG | - | chr4_4:10186907-10186926 | Msa0668880:CDS | 35.0% | |
| !!! | CTTTTTCCATTTTGGGGTAA+AGG | - | chr4_4:10187023-10187042 | Msa0668880:CDS | 35.0% |
| TTGAAGAAATGAGTGCTTTC+AGG | + | chr4_4:10187095-10187114 | None:intergenic | 35.0% | |
| AGCACTCATTTCTTCAAGAA+TGG | - | chr4_4:10187098-10187117 | Msa0668880:CDS | 35.0% | |
| !!! | AACACAACCACTTTTTCCTA+TGG | - | chr4_4:10187139-10187158 | Msa0668880:CDS | 35.0% |
| TAAGAGAAAATGAGCCAAAG+AGG | + | chr4_4:10187269-10187288 | None:intergenic | 35.0% | |
| ! | CTCATTTTCTCTTACACTGT+TGG | - | chr4_4:10187275-10187294 | Msa0668880:intron | 35.0% |
| !! | TGTTGGTGCTTTTAGCATAT+GGG | - | chr4_4:10187292-10187311 | Msa0668880:intron | 35.0% |
| !!! | GTGGTGGATTTTTGTATCAT+TGG | - | chr4_4:10187315-10187334 | Msa0668880:intron | 35.0% |
| !! | GGTGGATTTTTGTATCATTG+GGG | - | chr4_4:10187317-10187336 | Msa0668880:intron | 35.0% |
| TGTTGTTGCAAGAACAATCA+TGG | - | chr4_4:10187493-10187512 | Msa0668880:intron | 35.0% | |
| AAGATTGCGACCTTAGTTTA+AGG | - | chr4_4:10187548-10187567 | Msa0668880:intron | 35.0% | |
| AGATTGCGACCTTAGTTTAA+GGG | - | chr4_4:10187549-10187568 | Msa0668880:intron | 35.0% | |
| TGTTGAGATACGAGAACTTA+TGG | - | chr4_4:10187626-10187645 | Msa0668880:intron | 35.0% | |
| AATGTATTGCTTATGCTAGC+AGG | - | chr4_4:10187880-10187899 | Msa0668880:intron | 35.0% | |
| AAAGAAAGCAACATCCAAAG+TGG | + | chr4_4:10188031-10188050 | None:intergenic | 35.0% | |
| !! | ACTTTGGATGTTGCTTTCTT+TGG | - | chr4_4:10188030-10188049 | Msa0668880:intron | 35.0% |
| ACGCAATAATGTATCGTAAG+TGG | + | chr4_4:10188256-10188275 | None:intergenic | 35.0% | |
| ATTGTGACTAAAGTCTTGAC+AGG | - | chr4_4:10188512-10188531 | Msa0668880:intron | 35.0% | |
| TTGTGACTAAAGTCTTGACA+GGG | - | chr4_4:10188513-10188532 | Msa0668880:intron | 35.0% | |
| TTAGATGTACCAAATGGACA+AGG | - | chr4_4:10188804-10188823 | Msa0668880:intron | 35.0% | |
| TATTGGCATTTACTAAGAGG+TGG | - | chr4_4:10188916-10188935 | Msa0668880:intron | 35.0% | |
| ATTGGCATTTACTAAGAGGT+GGG | - | chr4_4:10188917-10188936 | Msa0668880:intron | 35.0% | |
| ! | ATAGTGATGGGAATACTATC+TGG | - | chr4_4:10188981-10189000 | Msa0668880:intron | 35.0% |
| ! | TAGTGATGGGAATACTATCT+GGG | - | chr4_4:10188982-10189001 | Msa0668880:intron | 35.0% |
| GAAGTCAACTCTTCTACAAA+AGG | - | chr4_4:10189040-10189059 | Msa0668880:intron | 35.0% | |
| TTCAAAGAACCAAAAACCGT+TGG | + | chr4_4:10189164-10189183 | None:intergenic | 35.0% | |
| GCAGTCTCTCTTCAAAATAT+TGG | - | chr4_4:10189215-10189234 | Msa0668880:CDS | 35.0% | |
| GGCTAAATTTCACTTGTAAG+GGG | + | chr4_4:10189491-10189510 | None:intergenic | 35.0% | |
| GTGGCTAAATTTCACTTGTA+AGG | + | chr4_4:10189493-10189512 | None:intergenic | 35.0% | |
| ! | GATATGGCTCTGTTATTACT+TGG | + | chr4_4:10189612-10189631 | None:intergenic | 35.0% |
| ATGGACAAGAGGTAACAAAT+AGG | + | chr4_4:10189975-10189994 | None:intergenic | 35.0% | |
| AAACAAATTGCATGGACAAG+AGG | + | chr4_4:10189986-10190005 | None:intergenic | 35.0% | |
| CCTCCTATAAACAAATTGCA+TGG | + | chr4_4:10189994-10190013 | None:intergenic | 35.0% | |
| ! | CCATGCAATTTGTTTATAGG+AGG | - | chr4_4:10189991-10190010 | Msa0668880:CDS | 35.0% |
| AATGGTAGGAAAACATGCAT+AGG | + | chr4_4:10190037-10190056 | None:intergenic | 35.0% | |
| AATATGAGTCTGCAAAGATC+TGG | + | chr4_4:10190170-10190189 | None:intergenic | 35.0% | |
| TCAGTTCTTGAAGCAATTAG+TGG | - | chr4_4:10190238-10190257 | Msa0668880:CDS | 35.0% | |
| AAGTATCACCCTATGTTACT+GGG | - | chr4_4:10190468-10190487 | Msa0668880:CDS | 35.0% | |
| ! | TTTAGCCATTGTGGTGATGA+AGG | + | chr4_4:10186807-10186826 | None:intergenic | 40.0% |
| TCACCACAATGGCTAAACAA+AGG | - | chr4_4:10186810-10186829 | Msa0668880:CDS | 40.0% | |
| ! | TCTCCTTTGTTTAGCCATTG+TGG | + | chr4_4:10186816-10186835 | None:intergenic | 40.0% |
| CATGCTTTGTAGACCAACTA+GGG | + | chr4_4:10186865-10186884 | None:intergenic | 40.0% | |
| AGTAATCCTCTATGCAAGCA+TGG | - | chr4_4:10186893-10186912 | Msa0668880:CDS | 40.0% | |
| ! | TTTTGACCATGCTTGCATAG+AGG | + | chr4_4:10186902-10186921 | None:intergenic | 40.0% |
| GGCTATGAATTCAGCTTTCA+TGG | - | chr4_4:10186929-10186948 | Msa0668880:CDS | 40.0% | |
| GTTCATCACCAAAAGCCATA+CGG | + | chr4_4:10187004-10187023 | None:intergenic | 40.0% | |
| AGTGAAGCCATAGGAAAAAG+TGG | + | chr4_4:10187149-10187168 | None:intergenic | 40.0% | |
| TTGTTAGCTGGATCTGTTCT+TGG | - | chr4_4:10187209-10187228 | Msa0668880:intron | 40.0% | |
| GAAGAATGAACATTAGGGCT+TGG | - | chr4_4:10187231-10187250 | Msa0668880:intron | 40.0% | |
| AATGAACATTAGGGCTTGGA+TGG | - | chr4_4:10187235-10187254 | Msa0668880:intron | 40.0% | |
| !! | CTGTTGGTGCTTTTAGCATA+TGG | - | chr4_4:10187291-10187310 | Msa0668880:intron | 40.0% |
| !! | GTTGGTGCTTTTAGCATATG+GGG | - | chr4_4:10187293-10187312 | Msa0668880:intron | 40.0% |
| !! | CATCTTTCTTCTGGAATTGG+TGG | - | chr4_4:10187371-10187390 | Msa0668880:intron | 40.0% |
| TGGATTCACTGCAGCTTATT+GGG | - | chr4_4:10187391-10187410 | Msa0668880:intron | 40.0% | |
| !!! | TTTTTTTCTAGGTTGGGCCA+AGG | - | chr4_4:10187824-10187843 | Msa0668880:intron | 40.0% |
| ! | GAGTCAATGTTTGCTGCATA+TGG | + | chr4_4:10187952-10187971 | None:intergenic | 40.0% |
| TTTGGTAAGCCTTCAGTGAT+TGG | - | chr4_4:10188048-10188067 | Msa0668880:intron | 40.0% | |
| TTTATAGACAAACCTGCTCC+AGG | + | chr4_4:10188114-10188133 | None:intergenic | 40.0% | |
| TTGGCATTTACTAAGAGGTG+GGG | - | chr4_4:10188918-10188937 | Msa0668880:intron | 40.0% | |
| !! | TACTATCTGGGAGTATTCCA+TGG | - | chr4_4:10188994-10189013 | Msa0668880:intron | 40.0% |
| !! | TATTCCATGGTGGACTATGA+TGG | - | chr4_4:10189007-10189026 | Msa0668880:intron | 40.0% |
| ! | GTAGAAGAGTTGACTTCTTG+TGG | + | chr4_4:10189037-10189056 | None:intergenic | 40.0% |
| TTTGAAGAGAGACTGCAACT+AGG | + | chr4_4:10189211-10189230 | None:intergenic | 40.0% | |
| GACAAGAGGTAACAAATAGG+AGG | + | chr4_4:10189972-10189991 | None:intergenic | 40.0% | |
| GGAAAACATGCATAGGATCA+AGG | + | chr4_4:10190030-10190049 | None:intergenic | 40.0% | |
| ATGTGTGTGAAACACTCCAA+GGG | + | chr4_4:10190099-10190118 | None:intergenic | 40.0% | |
| TCTTTGCAGACTCATATTGC+CGG | - | chr4_4:10190172-10190191 | Msa0668880:CDS | 40.0% | |
| GAAGAGAAGAATTAGTGTGG+TGG | + | chr4_4:10190297-10190316 | None:intergenic | 40.0% | |
| TACAACTGTTCATACCCTTG+AGG | - | chr4_4:10190318-10190337 | Msa0668880:CDS | 40.0% | |
| AAGTATGACCCAACTAAGCA+TGG | - | chr4_4:10190419-10190438 | Msa0668880:CDS | 40.0% | |
| ATGAGGATCCATGCTTAGTT+GGG | + | chr4_4:10190430-10190449 | None:intergenic | 40.0% | |
| ! | GAAGTATCACCCTATGTTAC+TGG | - | chr4_4:10190467-10190486 | Msa0668880:CDS | 40.0% |
| AGTATCACCCTATGTTACTG+GGG | - | chr4_4:10190469-10190488 | Msa0668880:CDS | 40.0% | |
| CTCTTGGTATGCTGTTGGAA+GGG | + | chr4_4:10186778-10186797 | None:intergenic | 45.0% | |
| ACCTTCCTTCATCACCACAA+TGG | - | chr4_4:10186799-10186818 | Msa0668880:CDS | 45.0% | |
| ATGACAGCATCAACCCTAGT+TGG | - | chr4_4:10186849-10186868 | Msa0668880:CDS | 45.0% | |
| GCATGCTTTGTAGACCAACT+AGG | + | chr4_4:10186866-10186885 | None:intergenic | 45.0% | |
| GCATAGAGGATTACTAGACC+TGG | + | chr4_4:10186888-10186907 | None:intergenic | 45.0% | |
| ! | GGTAAAGGTGCACCTTCATT+AGG | - | chr4_4:10187038-10187057 | Msa0668880:CDS | 45.0% |
| ! | GGATGGCTTTTGTACCTCTT+TGG | - | chr4_4:10187252-10187271 | Msa0668880:intron | 45.0% |
| !! | TGGGGTGTCATTGATTTCTC+TGG | - | chr4_4:10187335-10187354 | Msa0668880:intron | 45.0% |
| !! | GGTGTCATTGATTTCTCTGG+TGG | - | chr4_4:10187338-10187357 | Msa0668880:intron | 45.0% |
| GTGGATTCACTGCAGCTTAT+TGG | - | chr4_4:10187390-10187409 | Msa0668880:intron | 45.0% | |
| CCAGACAGACCCTTAAACTA+AGG | + | chr4_4:10187561-10187580 | None:intergenic | 45.0% | |
| CCTTAGTTTAAGGGTCTGTC+TGG | - | chr4_4:10187558-10187577 | Msa0668880:intron | 45.0% | |
| ! | CTAGTTGAAGATTTTCGGCC+CGG | + | chr4_4:10187781-10187800 | None:intergenic | 45.0% |
| GCCAAGGTTGAAGAGTGATA+GGG | - | chr4_4:10187840-10187859 | Msa0668880:intron | 45.0% | |
| TCCCTATCACTCTTCAACCT+TGG | + | chr4_4:10187844-10187863 | None:intergenic | 45.0% | |
| TAGCAGGTGCAGGATTGTTA+TGG | - | chr4_4:10187896-10187915 | Msa0668880:intron | 45.0% | |
| AGGTGCAGGATTGTTATGGA+TGG | - | chr4_4:10187900-10187919 | Msa0668880:intron | 45.0% | |
| GGTGCAGGATTGTTATGGAT+GGG | - | chr4_4:10187901-10187920 | Msa0668880:intron | 45.0% | |
| CAGGATTGTTATGGATGGGT+TGG | - | chr4_4:10187905-10187924 | Msa0668880:intron | 45.0% | |
| !! | TTGTTATGGATGGGTTGGTC+AGG | - | chr4_4:10187910-10187929 | Msa0668880:intron | 45.0% |
| !! | ATGGGTTGGTCAGGATTCAA+TGG | - | chr4_4:10187919-10187938 | Msa0668880:intron | 45.0% |
| TGAACAGCTCCAATCACTGA+AGG | + | chr4_4:10188060-10188079 | None:intergenic | 45.0% | |
| TTCAGTGATTGGAGCTGTTC+AGG | - | chr4_4:10188059-10188078 | Msa0668880:intron | 45.0% | |
| TCAGTGATTGGAGCTGTTCA+GGG | - | chr4_4:10188060-10188079 | Msa0668880:intron | 45.0% | |
| GTAGAGGATCCTTGTCCATT+TGG | + | chr4_4:10188816-10188835 | None:intergenic | 45.0% | |
| CATTTACTAAGAGGTGGGGT+TGG | - | chr4_4:10188922-10188941 | Msa0668880:intron | 45.0% | |
| TCATGGGCAGCTATAGTGAT+GGG | - | chr4_4:10188969-10188988 | Msa0668880:intron | 45.0% | |
| !! | TATCTGGGAGTATTCCATGG+TGG | - | chr4_4:10188997-10189016 | Msa0668880:intron | 45.0% |
| ! | GAAGAGTTGACTTCTTGTGG+AGG | + | chr4_4:10189034-10189053 | None:intergenic | 45.0% |
| ! | CTTGCTGTGTTGTGTGACTT+GGG | + | chr4_4:10189321-10189340 | None:intergenic | 45.0% |
| CAAGTCACACAACACAGCAA+GGG | - | chr4_4:10189320-10189339 | Msa0668880:CDS | 45.0% | |
| ATCTCTCTCAAACGGTGACA+CGG | - | chr4_4:10189916-10189935 | Msa0668880:CDS | 45.0% | |
| CATGTGTGTGAAACACTCCA+AGG | + | chr4_4:10190100-10190119 | None:intergenic | 45.0% | |
| AGTGTTTCACACACATGCTG+TGG | - | chr4_4:10190103-10190122 | Msa0668880:CDS | 45.0% | |
| TATTGCCGGTGACCAATTCA+AGG | - | chr4_4:10190186-10190205 | Msa0668880:CDS | 45.0% | |
| ATTGCCGGTGACCAATTCAA+GGG | - | chr4_4:10190187-10190206 | Msa0668880:CDS | 45.0% | |
| ATAGAAGGCTCCCCTTGAAT+TGG | + | chr4_4:10190201-10190220 | None:intergenic | 45.0% | |
| AATTCAAGGGGAGCCTTCTA+TGG | - | chr4_4:10190200-10190219 | Msa0668880:CDS | 45.0% | |
| ATTCAAGGGGAGCCTTCTAT+GGG | - | chr4_4:10190201-10190220 | Msa0668880:CDS | 45.0% | |
| ! | TGGCAGCACTTTTCATCACT+GGG | - | chr4_4:10190258-10190277 | Msa0668880:CDS | 45.0% |
| CGAGGAAGCTTATGCACTTT+GGG | - | chr4_4:10190385-10190404 | Msa0668880:CDS | 45.0% | |
| GAGGAAGCTTATGCACTTTG+GGG | - | chr4_4:10190386-10190405 | Msa0668880:CDS | 45.0% | |
| GATGAGGATCCATGCTTAGT+TGG | + | chr4_4:10190431-10190450 | None:intergenic | 45.0% | |
| !!! | TTTATTTATTTTTTTCAAAA+TGG | - | chr4_4:10188377-10188396 | Msa0668880:intron | 5.0% |
| !!! | TTATTTATTTTTTTCAAAAT+GGG | - | chr4_4:10188378-10188397 | Msa0668880:intron | 5.0% |
| GCTCTTGGTATGCTGTTGGA+AGG | + | chr4_4:10186779-10186798 | None:intergenic | 50.0% | |
| AGGTGCTCTTGGTATGCTGT+TGG | + | chr4_4:10186783-10186802 | None:intergenic | 50.0% | |
| !! | GTGATGAAGGAAGGTGCTCT+TGG | + | chr4_4:10186794-10186813 | None:intergenic | 50.0% |
| ! | GCCATTGTGGTGATGAAGGA+AGG | + | chr4_4:10186803-10186822 | None:intergenic | 50.0% |
| ! | GTTGGTCTACAAAGCATGCC+AGG | - | chr4_4:10186867-10186886 | Msa0668880:CDS | 50.0% |
| ! | GGTACTTTTGGGCTACCGTA+TGG | - | chr4_4:10186986-10187005 | Msa0668880:CDS | 50.0% |
| ! | TTGGGCTACCGTATGGCTTT+TGG | - | chr4_4:10186993-10187012 | Msa0668880:CDS | 50.0% |
| GGTGCACCTTTACCCCAAAA+TGG | + | chr4_4:10187032-10187051 | None:intergenic | 50.0% | |
| ! | GGTGCTTTTAGCATATGGGG+TGG | - | chr4_4:10187296-10187315 | Msa0668880:intron | 50.0% |
| ! | GCTTTTAGCATATGGGGTGG+TGG | - | chr4_4:10187299-10187318 | Msa0668880:intron | 50.0% |
| GGCCAAGGTTGAAGAGTGAT+AGG | - | chr4_4:10187839-10187858 | Msa0668880:intron | 50.0% | |
| TTGCTTATGCTAGCAGGTGC+AGG | - | chr4_4:10187886-10187905 | Msa0668880:intron | 50.0% | |
| ! | GGTTGGTCAGGATTCAATGG+TGG | - | chr4_4:10187922-10187941 | Msa0668880:intron | 50.0% |
| ! | CTGCAACTAGTCTCCTAGTG+TGG | - | chr4_4:10188004-10188023 | Msa0668880:intron | 50.0% |
| TCTCCTAGTGTGGACCACTT+TGG | - | chr4_4:10188014-10188033 | Msa0668880:intron | 50.0% | |
| CATCCAAAGTGGTCCACACT+AGG | + | chr4_4:10188020-10188039 | None:intergenic | 50.0% | |
| GCTGTTCAGGGTATGATGAC+AGG | - | chr4_4:10188072-10188091 | Msa0668880:intron | 50.0% | |
| ! | GGACTTGTTTGCATCACTCC+TGG | - | chr4_4:10188093-10188112 | Msa0668880:intron | 50.0% |
| GTCATGGGCAGCTATAGTGA+TGG | - | chr4_4:10188968-10188987 | Msa0668880:intron | 50.0% | |
| AGGACCATCATAGTCCACCA+TGG | + | chr4_4:10189014-10189033 | None:intergenic | 50.0% | |
| ! | CCTTGCTGTGTTGTGTGACT+TGG | + | chr4_4:10189322-10189341 | None:intergenic | 50.0% |
| CCAAGTCACACAACACAGCA+AGG | - | chr4_4:10189319-10189338 | Msa0668880:CDS | 50.0% | |
| ACACAGGTAGATGACACCCT+TGG | - | chr4_4:10190080-10190099 | Msa0668880:CDS | 50.0% | |
| TTTCACACACATGCTGTGGC+CGG | - | chr4_4:10190107-10190126 | Msa0668880:CDS | 50.0% | |
| GTTCTGCTAAGAGACCTGTG+AGG | + | chr4_4:10190148-10190167 | None:intergenic | 50.0% | |
| TTGCCGGTGACCAATTCAAG+GGG | - | chr4_4:10190188-10190207 | Msa0668880:CDS | 50.0% | |
| ! | GTGGCAGCACTTTTCATCAC+TGG | - | chr4_4:10190257-10190276 | Msa0668880:CDS | 50.0% |
| ! | CAGCACTTTTCATCACTGGG+TGG | - | chr4_4:10190261-10190280 | Msa0668880:CDS | 50.0% |
| TGGTCGTTCGACATCCTCAA+GGG | + | chr4_4:10190335-10190354 | None:intergenic | 50.0% | |
| ACTGGCGATGATGCTGTACA+CGG | - | chr4_4:10190362-10190381 | Msa0668880:CDS | 50.0% | |
| GCGAGGAAGCTTATGCACTT+TGG | - | chr4_4:10190384-10190403 | Msa0668880:CDS | 50.0% | |
| !! | GCTTATGCACTTTGGGGTGA+TGG | - | chr4_4:10190392-10190411 | Msa0668880:CDS | 50.0% |
| CCTCTTGCCCCAGTAACATA+GGG | + | chr4_4:10190479-10190498 | None:intergenic | 50.0% | |
| ACCTCTTGCCCCAGTAACAT+AGG | + | chr4_4:10190480-10190499 | None:intergenic | 50.0% | |
| GTTTGCATCACTCCTGGAGC+AGG | - | chr4_4:10188099-10188118 | Msa0668880:intron | 55.0% | |
| CTGTGAGGAGGCCTCCTAAA+AGG | + | chr4_4:10190133-10190152 | None:intergenic | 55.0% | |
| !! | CTTTTAGGAGGCCTCCTCAC+AGG | - | chr4_4:10190131-10190150 | Msa0668880:CDS | 55.0% |
| CTGCTAAGAGACCTGTGAGG+AGG | + | chr4_4:10190145-10190164 | None:intergenic | 55.0% | |
| GCTCCCCTTGAATTGGTCAC+CGG | + | chr4_4:10190194-10190213 | None:intergenic | 55.0% | |
| CTGGTCGTTCGACATCCTCA+AGG | + | chr4_4:10190336-10190355 | None:intergenic | 55.0% | |
| CCCTATGTTACTGGGGCAAG+AGG | - | chr4_4:10190476-10190495 | Msa0668880:CDS | 55.0% | |
| !! | GAGGTGGGGTTGGTTGCAAC+TGG | - | chr4_4:10188932-10188951 | Msa0668880:intron | 60.0% |
| !! | TGGGGTTGGTTGCAACTGGC+AGG | - | chr4_4:10188936-10188955 | Msa0668880:intron | 60.0% |
| !! | GGGGTTGGTTGCAACTGGCA+GGG | - | chr4_4:10188937-10188956 | Msa0668880:intron | 60.0% |
| TGGCAGGGCTTGTGCAGTCA+TGG | - | chr4_4:10188952-10188971 | Msa0668880:intron | 60.0% | |
| GGCAGGGCTTGTGCAGTCAT+GGG | - | chr4_4:10188953-10188972 | Msa0668880:intron | 60.0% | |
| ! | CATGCTGTGGCCGGCCTTTT+AGG | - | chr4_4:10190116-10190135 | Msa0668880:CDS | 60.0% |
| GAGGAGGCCTCCTAAAAGGC+CGG | + | chr4_4:10190129-10190148 | None:intergenic | 60.0% | |
| AGGGGAGCCTTCTATGGGCA+TGG | - | chr4_4:10190206-10190225 | Msa0668880:CDS | 60.0% | |
| GGAGCCTTCTATGGGCATGG+CGG | - | chr4_4:10190209-10190228 | Msa0668880:CDS | 60.0% | |
| TCGAACGACCAGCTCGAGAC+TGG | - | chr4_4:10190344-10190363 | Msa0668880:CDS | 60.0% | |
| CATCATCGCCAGTCTCGAGC+TGG | + | chr4_4:10190355-10190374 | None:intergenic | 60.0% | |
| CGATGATGCTGTACACGGCG+AGG | - | chr4_4:10190367-10190386 | Msa0668880:CDS | 60.0% | |
| ! | GCTGTGGCCGGCCTTTTAGG+AGG | - | chr4_4:10190119-10190138 | Msa0668880:CDS | 65.0% |
| GCCTTCTATGGGCATGGCGG+CGG | - | chr4_4:10190212-10190231 | Msa0668880:CDS | 65.0% | |
| GCCGCCGCCATGCCCATAGA+AGG | + | chr4_4:10190216-10190235 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 10186771 | 10190517 | 10186771 | ID=Msa0668880;Name=Msa0668880 |
| chr4_4 | mRNA | 10186771 | 10190517 | 10186771 | ID=Msa0668880-mRNA-1;Parent=Msa0668880;Name=Msa0668880-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|4|0|487 |
| chr4_4 | exon | 10189876 | 10190517 | 10189876 | ID=Msa0668880-mRNA-1:exon:3105;Parent=Msa0668880-mRNA-1 |
| chr4_4 | exon | 10189168 | 10189453 | 10189168 | ID=Msa0668880-mRNA-1:exon:3104;Parent=Msa0668880-mRNA-1 |
| chr4_4 | exon | 10188227 | 10188330 | 10188227 | ID=Msa0668880-mRNA-1:exon:3103;Parent=Msa0668880-mRNA-1 |
| chr4_4 | exon | 10186771 | 10187202 | 10186771 | ID=Msa0668880-mRNA-1:exon:3102;Parent=Msa0668880-mRNA-1 |
| chr4_4 | CDS | 10189876 | 10190517 | 10189876 | ID=Msa0668880-mRNA-1:cds;Parent=Msa0668880-mRNA-1 |
| chr4_4 | CDS | 10189168 | 10189453 | 10189168 | ID=Msa0668880-mRNA-1:cds;Parent=Msa0668880-mRNA-1 |
| chr4_4 | CDS | 10188227 | 10188330 | 10188227 | ID=Msa0668880-mRNA-1:cds;Parent=Msa0668880-mRNA-1 |
| chr4_4 | CDS | 10186771 | 10187202 | 10186771 | ID=Msa0668880-mRNA-1:cds;Parent=Msa0668880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
