Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534150 | XP_013454883.1 | 99.179 | 487 | 4 | 0 | 1 | 487 | 1 | 487 | 0.0 | 979 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534150 | sp|Q9M6N7|AMT2_ARATH | 73.292 | 483 | 117 | 2 | 6 | 487 | 4 | 475 | 0.0 | 713 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534150 | A0A072UHP1 | 99.179 | 487 | 4 | 0 | 1 | 487 | 1 | 487 | 0.0 | 979 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0534150 | 0.804119 | 2.516601e-49 | -8.615850e-47 |
| Msa0012200 | Msa0534150 | 0.801163 | 1.025076e-48 | -8.615850e-47 |
| Msa0030700 | Msa0534150 | 0.803075 | 4.145494e-49 | -8.615850e-47 |
| Msa0032080 | Msa0534150 | 0.811981 | 5.332634e-51 | -8.615850e-47 |
| Msa0065680 | Msa0534150 | -0.802267 | 6.083911e-49 | -8.615850e-47 |
| Msa0081020 | Msa0534150 | 0.808093 | 3.668016e-50 | -8.615850e-47 |
| Msa0081780 | Msa0534150 | 0.808521 | 2.973432e-50 | -8.615850e-47 |
| Msa0090570 | Msa0534150 | 0.828901 | 6.946007e-55 | -8.615850e-47 |
| Msa0117520 | Msa0534150 | 0.801193 | 1.010646e-48 | -8.615850e-47 |
| Msa0127800 | Msa0534150 | 0.806987 | 6.296851e-50 | -8.615850e-47 |
| Msa0160960 | Msa0534150 | 0.813923 | 2.002112e-51 | -8.615850e-47 |
| Msa0168310 | Msa0534150 | 0.815662 | 8.240296e-52 | -8.615850e-47 |
| Msa0217700 | Msa0534150 | 0.838903 | 2.180358e-57 | -8.615850e-47 |
| Msa0218370 | Msa0534150 | 0.810245 | 1.268734e-50 | -8.615850e-47 |
| Msa0367870 | Msa0534150 | 0.804379 | 2.222666e-49 | -8.615850e-47 |
| Msa0369920 | Msa0534150 | 0.803282 | 3.754610e-49 | -8.615850e-47 |
| Msa0381610 | Msa0534150 | -0.802089 | 6.619988e-49 | -8.615850e-47 |
| Msa0411390 | Msa0534150 | 0.806801 | 6.895152e-50 | -8.615850e-47 |
| Msa0417330 | Msa0534150 | 0.812251 | 4.657511e-51 | -8.615850e-47 |
| Msa0432160 | Msa0534150 | 0.810161 | 1.322610e-50 | -8.615850e-47 |
| Msa0434180 | Msa0534150 | 0.805187 | 1.506464e-49 | -8.615850e-47 |
| Msa0434540 | Msa0534150 | 0.819568 | 1.084682e-52 | -8.615850e-47 |
| Msa0450400 | Msa0534150 | -0.805964 | 1.035289e-49 | -8.615850e-47 |
| Msa0455760 | Msa0534150 | 0.826522 | 2.590833e-54 | -8.615850e-47 |
| Msa0476680 | Msa0534150 | 0.813304 | 2.738948e-51 | -8.615850e-47 |
| Msa0240900 | Msa0534150 | 0.816806 | 4.574708e-52 | -8.615850e-47 |
| Msa0241140 | Msa0534150 | 0.812666 | 3.779647e-51 | -8.615850e-47 |
| Msa0244640 | Msa0534150 | 0.806631 | 7.489830e-50 | -8.615850e-47 |
| Msa0267790 | Msa0534150 | 0.817517 | 3.164493e-52 | -8.615850e-47 |
| Msa0270580 | Msa0534150 | 0.804117 | 2.519768e-49 | -8.615850e-47 |
| Msa0278580 | Msa0534150 | 0.810601 | 1.062819e-50 | -8.615850e-47 |
| Msa0287870 | Msa0534150 | 0.820661 | 6.096526e-53 | -8.615850e-47 |
| Msa0296820 | Msa0534150 | 0.805265 | 1.451408e-49 | -8.615850e-47 |
| Msa0306610 | Msa0534150 | 0.813278 | 2.775041e-51 | -8.615850e-47 |
| Msa0317970 | Msa0534150 | 0.823056 | 1.700631e-53 | -8.615850e-47 |
| Msa0337580 | Msa0534150 | 0.835305 | 1.812729e-56 | -8.615850e-47 |
| Msa0363790 | Msa0534150 | 0.817136 | 3.856947e-52 | -8.615850e-47 |
| Msa0521010 | Msa0534150 | 0.815478 | 9.058057e-52 | -8.615850e-47 |
| Msa0526730 | Msa0534150 | 0.800903 | 1.158671e-48 | -8.615850e-47 |
| Msa0530560 | Msa0534150 | 0.800183 | 1.623853e-48 | -8.615850e-47 |
| Msa0534150 | Msa0581400 | 0.816574 | 5.154498e-52 | -8.615850e-47 |
| Msa0534150 | Msa0583360 | -0.805069 | 1.594634e-49 | -8.615850e-47 |
| Msa0534150 | Msa0590150 | 0.927235 | 1.558312e-91 | -8.615850e-47 |
| Msa0534150 | Msa0594050 | 0.804895 | 1.733848e-49 | -8.615850e-47 |
| Msa0534150 | Msa0600590 | 0.809563 | 1.778541e-50 | -8.615850e-47 |
| Msa0534150 | Msa0611540 | -0.804456 | 2.141140e-49 | -8.615850e-47 |
| Msa0534150 | Msa0630730 | 0.863701 | 2.063683e-64 | -8.615850e-47 |
| Msa0534150 | Msa0641130 | 0.804131 | 2.503139e-49 | -8.615850e-47 |
| Msa0534150 | Msa0668880 | 0.871180 | 8.318480e-67 | -8.615850e-47 |
| Msa0534150 | Msa0711150 | 0.846771 | 1.761387e-59 | -8.615850e-47 |
| Msa0534150 | Msa0733010 | 0.848124 | 7.483825e-60 | -8.615850e-47 |
| Msa0534150 | Msa0738030 | 0.812288 | 4.570810e-51 | -8.615850e-47 |
| Msa0534150 | Msa0738340 | 0.822343 | 2.492709e-53 | -8.615850e-47 |
| Msa0534150 | Msa0823370 | 0.851022 | 1.162983e-60 | -8.615850e-47 |
| Msa0534150 | Msa0830230 | 0.841154 | 5.642243e-58 | -8.615850e-47 |
| Msa0534150 | Msa0833530 | 0.811512 | 6.748111e-51 | -8.615850e-47 |
| Msa0534150 | Msa0835230 | 0.803400 | 3.550580e-49 | -8.615850e-47 |
| Msa0534150 | Msa0857940 | 0.836057 | 1.169536e-56 | -8.615850e-47 |
| Msa0534150 | Msa0878220 | 0.828441 | 8.973098e-55 | -8.615850e-47 |
| Msa0534150 | Msa0888260 | 0.804426 | 2.172296e-49 | -8.615850e-47 |
| Msa0534150 | Msa0894710 | 0.805797 | 1.122487e-49 | -8.615850e-47 |
| Msa0534150 | Msa0932100 | 0.802983 | 4.331027e-49 | -8.615850e-47 |
| Msa0534150 | Msa0939140 | 0.829181 | 5.942480e-55 | -8.615850e-47 |
| Msa0534150 | Msa0943970 | 0.824748 | 6.823996e-54 | -8.615850e-47 |
| Msa0534150 | Msa0944020 | 0.814874 | 1.233304e-51 | -8.615850e-47 |
| Msa0534150 | Msa0965080 | 0.810127 | 1.345124e-50 | -8.615850e-47 |
| Msa0534150 | Msa0965290 | 0.822578 | 2.198285e-53 | -8.615850e-47 |
| Msa0534150 | Msa0970230 | 0.802463 | 5.544564e-49 | -8.615850e-47 |
| Msa0534150 | Msa0999680 | 0.820295 | 7.398577e-53 | -8.615850e-47 |
| Msa0534150 | Msa1048220 | 0.831241 | 1.866580e-55 | -8.615850e-47 |
| Msa0534150 | Msa1089450 | 0.814238 | 1.706043e-51 | -8.615850e-47 |
| Msa0534150 | Msa1089460 | 0.815281 | 1.001684e-51 | -8.615850e-47 |
| Msa0534150 | Msa1104560 | 0.810343 | 1.208678e-50 | -8.615850e-47 |
| Msa0534150 | Msa1122150 | 0.840294 | 9.483794e-58 | -8.615850e-47 |
| Msa0534150 | Msa1155170 | -0.816517 | 5.309149e-52 | -8.615850e-47 |
| Msa0534150 | Msa1160560 | 0.826085 | 3.291252e-54 | -8.615850e-47 |
| Msa0534150 | Msa1188180 | 0.801690 | 7.993798e-49 | -8.615850e-47 |
| Msa0534150 | Msa1211230 | -0.832730 | 7.999361e-56 | -8.615850e-47 |
| Msa0534150 | Msa1211420 | -0.803810 | 2.918167e-49 | -8.615850e-47 |
| Msa0534150 | Msa1213890 | 0.823416 | 1.401919e-53 | -8.615850e-47 |
| Msa0534150 | Msa1221330 | 0.821158 | 4.685495e-53 | -8.615850e-47 |
| Msa0534150 | Msa1225860 | -0.810988 | 8.764660e-51 | -8.615850e-47 |
| Msa0534150 | Msa1281690 | 0.802816 | 4.688175e-49 | -8.615850e-47 |
| Msa0534150 | Msa1299400 | -0.829543 | 4.853137e-55 | -8.615850e-47 |
| Msa0534150 | Msa1319560 | 0.805602 | 1.232969e-49 | -8.615850e-47 |
| Msa0534150 | Msa1325410 | -0.813092 | 3.048145e-51 | -8.615850e-47 |
| Msa0534150 | Msa1331050 | -0.822685 | 2.075765e-53 | -8.615850e-47 |
| Msa0534150 | Msa1342380 | 0.820636 | 6.177611e-53 | -8.615850e-47 |
| Msa0534150 | Msa1352280 | -0.810319 | 1.222754e-50 | -8.615850e-47 |
| Msa0534150 | Msa1380220 | 0.837176 | 6.065579e-57 | -8.615850e-47 |
| Msa0534150 | Msa1384750 | 0.801258 | 9.801570e-49 | -8.615850e-47 |
| Msa0534150 | Msa1419690 | 0.807932 | 3.969618e-50 | -8.615850e-47 |
| Msa0534150 | Msa1419840 | 0.801666 | 8.087100e-49 | -8.615850e-47 |
| Msa0534150 | Msa1442920 | 0.830070 | 3.612330e-55 | -8.615850e-47 |
| Msa0534150 | Msa1450440 | 0.806885 | 6.619680e-50 | -8.615850e-47 |
| Msa0534150 | Msa1452710 | 0.861787 | 8.024586e-64 | -8.615850e-47 |
| Msa0534150 | Msa1458680 | 0.816148 | 6.420842e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534150 | MtrunA17_Chr7g0243071 | 84.836 | 488 | 72 | 2 | 1 | 487 | 1 | 487 | 0.0 | 812 |
| Msa0534150 | MtrunA17_Chr8g0385081 | 71.398 | 472 | 129 | 2 | 2 | 467 | 8 | 479 | 0.0 | 651 |
| Msa0534150 | MtrunA17_Chr4g0007621 | 99.357 | 311 | 2 | 0 | 1 | 311 | 1 | 311 | 0.0 | 632 |
| Msa0534150 | MtrunA17_Chr1g0163571 | 61.728 | 486 | 157 | 6 | 12 | 487 | 14 | 480 | 0.0 | 568 |
| Msa0534150 | MtrunA17_Chr7g0274111 | 54.082 | 490 | 189 | 8 | 1 | 475 | 1 | 469 | 1.33e-180 | 514 |
| Msa0534150 | MtrunA17_Chr8g0371171 | 57.299 | 274 | 103 | 5 | 215 | 481 | 37 | 303 | 4.38e-102 | 308 |
| Msa0534150 | MtrunA17_Chr4g0007611 | 96.575 | 146 | 5 | 0 | 342 | 487 | 7 | 152 | 2.29e-96 | 287 |
| Msa0534150 | MtrunA17_Chr8g0371161 | 59.174 | 218 | 64 | 3 | 5 | 215 | 6 | 205 | 9.91e-75 | 234 |
| Msa0534150 | MtrunA17_Chr1g0168631 | 27.386 | 482 | 279 | 17 | 22 | 466 | 48 | 495 | 6.25e-23 | 101 |
| Msa0534150 | MtrunA17_Chr1g0189971 | 27.044 | 477 | 279 | 16 | 22 | 463 | 47 | 489 | 5.19e-21 | 95.9 |
| Msa0534150 | MtrunA17_Chr7g0262361 | 24.948 | 477 | 287 | 15 | 22 | 463 | 47 | 487 | 9.26e-16 | 79.7 |
| Msa0534150 | MtrunA17_Chr3g0104661 | 23.780 | 492 | 283 | 15 | 23 | 470 | 14 | 457 | 4.03e-15 | 77.4 |
| Msa0534150 | MtrunA17_Chr7g0272721 | 25.417 | 480 | 277 | 18 | 22 | 461 | 47 | 485 | 7.88e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534150 | AT2G38290.1 | 73.292 | 483 | 117 | 2 | 6 | 487 | 4 | 475 | 0.0 | 713 |
| Msa0534150 | AT2G38290.2 | 76.045 | 359 | 85 | 1 | 130 | 487 | 1 | 359 | 0.0 | 541 |
| Msa0534150 | AT1G64780.1 | 25.983 | 458 | 280 | 13 | 22 | 449 | 52 | 480 | 2.26e-22 | 100 |
| Msa0534150 | AT4G13510.1 | 26.216 | 473 | 282 | 14 | 22 | 461 | 42 | 480 | 4.83e-22 | 99.4 |
| Msa0534150 | AT3G24300.1 | 26.240 | 484 | 274 | 17 | 22 | 464 | 46 | 487 | 3.27e-21 | 97.1 |
| Msa0534150 | AT3G24290.1 | 26.030 | 461 | 271 | 12 | 22 | 448 | 46 | 470 | 1.65e-19 | 91.7 |
| Msa0534150 | AT4G28700.1 | 26.464 | 461 | 272 | 14 | 22 | 448 | 51 | 478 | 1.12e-18 | 89.4 |
Find 129 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATCTGACTCATAAATTTA+TGG | 0.137091 | 4_1:-9492695 | None:intergenic |
| TTGAAGAAGTGAGTGCTTTC+AGG | 0.212878 | 4_1:-9489241 | None:intergenic |
| TTCGGTGATTGGTGCTGTTC+AGG | 0.220579 | 4_1:+9490248 | Msa0534150:CDS |
| TATGTTATTCATCTTTCTTC+TGG | 0.220707 | 4_1:+9489511 | Msa0534150:CDS |
| TTCTTGGAAGAATGAATATT+AGG | 0.252042 | 4_1:+9489374 | Msa0534150:CDS |
| GTGGCTTCACTGCAGCTTAT+TGG | 0.261485 | 4_1:+9489539 | Msa0534150:CDS |
| ACTTTGGATGTTGCTTTCTT+TGG | 0.270509 | 4_1:+9490219 | Msa0534150:CDS |
| AATTCAAGGGGAGCCTTCTA+TGG | 0.272145 | 4_1:+9492391 | Msa0534150:CDS |
| ATTCATCTTTCTTCTGGAAT+TGG | 0.280645 | 4_1:+9489517 | Msa0534150:CDS |
| CGAGGAAGCTTATGCACTTT+GGG | 0.285767 | 4_1:+9492576 | Msa0534150:CDS |
| TGGCTTCACTGCAGCTTATT+GGG | 0.305411 | 4_1:+9489540 | Msa0534150:CDS |
| GAAGTATCGCCCTATGTTAC+TGG | 0.311212 | 4_1:+9492658 | Msa0534150:CDS |
| TTATGTTACCGTATGGCTTT+TGG | 0.319329 | 4_1:+9489142 | Msa0534150:CDS |
| CTGTGAGGAGGCCTCCTAAA+AGG | 0.337602 | 4_1:-9492321 | None:intergenic |
| TTTGGTAAACCTTCGGTGAT+TGG | 0.352644 | 4_1:+9490237 | Msa0534150:CDS |
| TTGTTAGCTGGATCTGTTCT+TGG | 0.363722 | 4_1:+9489358 | Msa0534150:CDS |
| GGTGCACCTTTACCCCAAAA+TGG | 0.368640 | 4_1:-9489178 | None:intergenic |
| TCTTGGAAGAATGAATATTA+GGG | 0.369907 | 4_1:+9489375 | Msa0534150:CDS |
| ATAGTGATGGGAATACTATC+TGG | 0.375245 | 4_1:+9491170 | Msa0534150:CDS |
| GGTAAAGGTGCACCTTCATT+AGG | 0.379029 | 4_1:+9489187 | Msa0534150:CDS |
| AGCATAAGCAACACATTGTT+TGG | 0.380283 | 4_1:-9490063 | None:intergenic |
| TAATAGCAGCAAAATTGAAT+TGG | 0.388241 | 4_1:-9489327 | None:intergenic |
| GCCGCCGCCATGCCCATAGA+AGG | 0.393092 | 4_1:-9492404 | None:intergenic |
| TGCTTTCTTTGGTAAACCTT+CGG | 0.394371 | 4_1:+9490230 | Msa0534150:CDS |
| TGGGGTGTCATTGATTTCTC+TGG | 0.400224 | 4_1:+9489484 | Msa0534150:CDS |
| TTGTTATGGATGGGTTGGTC+AGG | 0.408273 | 4_1:+9490099 | Msa0534150:CDS |
| CATCTTTCTTCTGGAATTGG+TGG | 0.409879 | 4_1:+9489520 | Msa0534150:CDS |
| TCGGTGATTGGTGCTGTTCA+GGG | 0.424919 | 4_1:+9490249 | Msa0534150:CDS |
| ATAGAAGGCTCCCCTTGAAT+TGG | 0.424952 | 4_1:-9492389 | None:intergenic |
| GCCTTCTATGGGCATGGCGG+CGG | 0.425599 | 4_1:+9492403 | Msa0534150:CDS |
| GCTTATGCACTTTGGGGTGA+TGG | 0.431224 | 4_1:+9492583 | Msa0534150:CDS |
| GAAGAATGAATATTAGGGCT+TGG | 0.432764 | 4_1:+9489380 | Msa0534150:CDS |
| GCGAGGAAGCTTATGCACTT+TGG | 0.438004 | 4_1:+9492575 | Msa0534150:CDS |
| GATGAGGATCCATGCTTAGT+TGG | 0.439794 | 4_1:-9492619 | None:intergenic |
| ATGAGGATCCATGCTTAGTT+GGG | 0.442073 | 4_1:-9492618 | None:intergenic |
| TCAGTTCTTGAAGCAATTAG+TGG | 0.444371 | 4_1:+9492429 | Msa0534150:CDS |
| GGCCAAGGTTGAAGAGTGAT+AGG | 0.447646 | 4_1:+9490028 | Msa0534150:CDS |
| TGGCAGGGCTTGTGCAGTCA+TGG | 0.448163 | 4_1:+9491141 | Msa0534150:intron |
| TCTTTGCAGACTCATATTGC+CGG | 0.453439 | 4_1:+9492363 | Msa0534150:CDS |
| TCCCTATCACTCTTCAACCT+TGG | 0.457019 | 4_1:-9490030 | None:intergenic |
| ATGCATCAGTACTAATATGT+TGG | 0.462130 | 4_1:+9489113 | Msa0534150:CDS |
| TTTATAGACAAACCTGCTCC+TGG | 0.463591 | 4_1:-9490300 | None:intergenic |
| GAAGTCAACTCTTCTACAAA+AGG | 0.471992 | 4_1:+9491229 | Msa0534150:CDS |
| GTTTGCATCACTCCAGGAGC+AGG | 0.475599 | 4_1:+9490288 | Msa0534150:CDS |
| TCGAACGACCAGCTCGAGAC+TGG | 0.475810 | 4_1:+9492535 | Msa0534150:CDS |
| TGCATCAGTACTAATATGTT+GGG | 0.478918 | 4_1:+9489114 | Msa0534150:CDS |
| CAGGATTGTTATGGATGGGT+TGG | 0.479032 | 4_1:+9490094 | Msa0534150:CDS |
| AATGAATATTAGGGCTTGGA+TGG | 0.483014 | 4_1:+9489384 | Msa0534150:CDS |
| GAGTCAATGTTTGCTGCATA+TGG | 0.486969 | 4_1:-9490138 | None:intergenic |
| TCTCCTTGTGTGGACCACTT+TGG | 0.489120 | 4_1:+9490203 | Msa0534150:CDS |
| GCATGCTTTGTAGACCAACT+AGG | 0.489380 | 4_1:-9489012 | None:intergenic |
| TTGCTTATGCTAGCAGGTGC+AGG | 0.490727 | 4_1:+9490075 | Msa0534150:CDS |
| GTAGAAGAGTTGACTTCTTG+TGG | 0.508479 | 4_1:-9491223 | None:intergenic |
| AGCACTCACTTCTTCAAGAA+TGG | 0.508614 | 4_1:+9489247 | Msa0534150:CDS |
| GTTGGTCTACAAAGCATGCC+AGG | 0.511038 | 4_1:+9489016 | Msa0534150:CDS |
| TATTGCCGGTGACCAATTCA+AGG | 0.517642 | 4_1:+9492377 | Msa0534150:CDS |
| GGCAGGGCTTGTGCAGTCAT+GGG | 0.521391 | 4_1:+9491142 | Msa0534150:intron |
| AATATGAGTCTGCAAAGATC+TGG | 0.521520 | 4_1:-9492358 | None:intergenic |
| TAGCAGGTGCAGGATTGTTA+TGG | 0.525281 | 4_1:+9490085 | Msa0534150:CDS |
| ACCTCTTGCCCCAGTAACAT+AGG | 0.525904 | 4_1:-9492668 | None:intergenic |
| ATGGGTTGGTCAGGATTCAA+TGG | 0.526672 | 4_1:+9490108 | Msa0534150:CDS |
| AAGTATCGCCCTATGTTACT+GGG | 0.527422 | 4_1:+9492659 | Msa0534150:CDS |
| AGGTGCAGGATTGTTATGGA+TGG | 0.529331 | 4_1:+9490089 | Msa0534150:CDS |
| TTTCTTTCTAGGTTGGGCCA+AGG | 0.529475 | 4_1:+9490013 | Msa0534150:intron |
| TCTCCTTTGTTTAGCCATTG+TGG | 0.531344 | 4_1:-9488962 | None:intergenic |
| ATGACAGCATCAACCCTAGT+TGG | 0.538896 | 4_1:+9488998 | Msa0534150:CDS |
| GGACTTGTTTGCATCACTCC+AGG | 0.541985 | 4_1:+9490282 | Msa0534150:CDS |
| TTTAGCCATTGTGGTGATGA+AGG | 0.544202 | 4_1:-9488953 | None:intergenic |
| TATTCCATGGTGGACTATGA+TGG | 0.546570 | 4_1:+9491196 | Msa0534150:CDS |
| CATGCTTTGTAGACCAACTA+GGG | 0.550313 | 4_1:-9489011 | None:intergenic |
| TAAGAGAAAATGAGCCAAAG+AGG | 0.550720 | 4_1:-9489415 | None:intergenic |
| TTTCACACACATGCTGTGGC+CGG | 0.552024 | 4_1:+9492298 | Msa0534150:CDS |
| GGTGTCATTGATTTCTCTGG+TGG | 0.552125 | 4_1:+9489487 | Msa0534150:CDS |
| TAGTGATGGGAATACTATCT+GGG | 0.552494 | 4_1:+9491171 | Msa0534150:CDS |
| TAAGCAACACATTGTTTGGT+GGG | 0.552871 | 4_1:-9490059 | None:intergenic |
| CCCTATGTTACTGGGGCAAG+AGG | 0.555196 | 4_1:+9492667 | Msa0534150:CDS |
| AAGTATGACCCAACTAAGCA+TGG | 0.559295 | 4_1:+9492610 | Msa0534150:CDS |
| GCTCTTGGTATGCTGTTGGA+AGG | 0.561258 | 4_1:-9488925 | None:intergenic |
| GTGATGAAGGAAGGTGCTCT+TGG | 0.563434 | 4_1:-9488940 | None:intergenic |
| TACTATCTGGGAGTATTCCA+TGG | 0.563931 | 4_1:+9491183 | Msa0534150:CDS |
| ATTCAAGGGGAGCCTTCTAT+GGG | 0.564319 | 4_1:+9492392 | Msa0534150:CDS |
| GAAGAGAAGAATTAGTGTGG+TGG | 0.570040 | 4_1:-9492485 | None:intergenic |
| CTCTTGGTATGCTGTTGGAA+GGG | 0.571295 | 4_1:-9488924 | None:intergenic |
| CTGGTCGTTCGACATCCTCA+AGG | 0.571654 | 4_1:-9492524 | None:intergenic |
| AGGTGCTCTTGGTATGCTGT+TGG | 0.575427 | 4_1:-9488929 | None:intergenic |
| CATCATCGCCAGTCTCGAGC+TGG | 0.582123 | 4_1:-9492543 | None:intergenic |
| TCATGGGCAGCTATAGTGAT+GGG | 0.585092 | 4_1:+9491158 | Msa0534150:CDS |
| AATGTGTTGCTTATGCTAGC+AGG | 0.586121 | 4_1:+9490069 | Msa0534150:CDS |
| AGGGGAGCCTTCTATGGGCA+TGG | 0.589588 | 4_1:+9492397 | Msa0534150:CDS |
| CTGCAACTAGTCTCCTTGTG+TGG | 0.589985 | 4_1:+9490193 | Msa0534150:CDS |
| ATAAGCAACACATTGTTTGG+TGG | 0.591826 | 4_1:-9490060 | None:intergenic |
| GCTGTTCAGGGTATGATGAC+AGG | 0.595190 | 4_1:+9490261 | Msa0534150:CDS |
| GTCATGGGCAGCTATAGTGA+TGG | 0.598047 | 4_1:+9491157 | Msa0534150:CDS |
| GCTCCCCTTGAATTGGTCAC+CGG | 0.599961 | 4_1:-9492382 | None:intergenic |
| GTTCATCACCAAAAGCCATA+CGG | 0.600057 | 4_1:-9489150 | None:intergenic |
| ACACAGGTAGATGACACCCT+TGG | 0.601482 | 4_1:+9492271 | Msa0534150:intron |
| GAGGAGGCCTCCTAAAAGGC+CGG | 0.601994 | 4_1:-9492317 | None:intergenic |
| GAGGAAGCTTATGCACTTTG+GGG | 0.606601 | 4_1:+9492577 | Msa0534150:CDS |
| CATCCAAAGTGGTCCACACA+AGG | 0.612687 | 4_1:-9490206 | None:intergenic |
| GGAGCCTTCTATGGGCATGG+CGG | 0.613135 | 4_1:+9492400 | Msa0534150:CDS |
| AAATAAACAAGTGAAGCCAT+AGG | 0.617576 | 4_1:-9489304 | None:intergenic |
| GCCATTGTGGTGATGAAGGA+AGG | 0.619330 | 4_1:-9488949 | None:intergenic |
| CCTCTTGCCCCAGTAACATA+GGG | 0.626736 | 4_1:-9492667 | None:intergenic |
| ATTGCCGGTGACCAATTCAA+GGG | 0.630938 | 4_1:+9492378 | Msa0534150:CDS |
| GCCAAGGTTGAAGAGTGATA+GGG | 0.631315 | 4_1:+9490029 | Msa0534150:CDS |
| AAAGAAAGCAACATCCAAAG+TGG | 0.635054 | 4_1:-9490217 | None:intergenic |
| TGTAATCCTCTATGCAAGCA+TGG | 0.635068 | 4_1:+9489042 | Msa0534150:CDS |
| TAAACAAAGGAGACAACTCA+TGG | 0.635470 | 4_1:+9488972 | Msa0534150:CDS |
| TATGAAGAGAAGAATTAGTG+TGG | 0.639971 | 4_1:-9492488 | None:intergenic |
| GCATAGAGGATTACAAGACC+TGG | 0.642693 | 4_1:-9489034 | None:intergenic |
| TACAACTGTTCATACCCTTG+AGG | 0.646650 | 4_1:+9492509 | Msa0534150:CDS |
| TGGTCGTTCGACATCCTCAA+GGG | 0.648802 | 4_1:-9492523 | None:intergenic |
| CTGCTAAGAGACCTGTGAGG+AGG | 0.651843 | 4_1:-9492333 | None:intergenic |
| GGTGCAGGATTGTTATGGAT+GGG | 0.652332 | 4_1:+9490090 | Msa0534150:CDS |
| TCACCACAATGGCTAAACAA+AGG | 0.669086 | 4_1:+9488959 | Msa0534150:CDS |
| GGTTGGTCAGGATTCAATGG+TGG | 0.669155 | 4_1:+9490111 | Msa0534150:CDS |
| ACTGGCGATGATGCTGTACA+CGG | 0.672487 | 4_1:+9492553 | Msa0534150:CDS |
| CGATGATGCTGTACACGGCG+AGG | 0.679210 | 4_1:+9492558 | Msa0534150:CDS |
| ACCTTCCTTCATCACCACAA+TGG | 0.681471 | 4_1:+9488948 | Msa0534150:CDS |
| AGTGTTTCACACACATGCTG+TGG | 0.682031 | 4_1:+9492294 | Msa0534150:CDS |
| TGAACAGCACCAATCACCGA+AGG | 0.685035 | 4_1:-9490246 | None:intergenic |
| GAAGAGTTGACTTCTTGTGG+AGG | 0.685329 | 4_1:-9491220 | None:intergenic |
| TTGCCGGTGACCAATTCAAG+GGG | 0.686365 | 4_1:+9492379 | Msa0534150:CDS |
| ATGTGTGTGAAACACTCCAA+GGG | 0.695193 | 4_1:-9492287 | None:intergenic |
| AGGACCATCATAGTCCACCA+TGG | 0.707593 | 4_1:-9491200 | None:intergenic |
| CATGTGTGTGAAACACTCCA+AGG | 0.722123 | 4_1:-9492288 | None:intergenic |
| AGTATCGCCCTATGTTACTG+GGG | 0.722852 | 4_1:+9492660 | Msa0534150:CDS |
| TATCTGGGAGTATTCCATGG+TGG | 0.732232 | 4_1:+9491186 | Msa0534150:CDS |
| GTTCTGCTAAGAGACCTGTG+AGG | 0.819277 | 4_1:-9492336 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAATAATATTACTATTTTA+GGG | - | chr4_1:9490686-9490705 | None:intergenic | 10.0% |
| !!! | GTATTTTATATTTTAGAATT+TGG | + | chr4_1:9491551-9491570 | Msa0534150:intron | 10.0% |
| !!! | TGTTTTTCATTTTATTTTTT+AGG | - | chr4_1:9491717-9491736 | None:intergenic | 10.0% |
| !!! | GTATTATATATTTTAGAATT+TGG | + | chr4_1:9491759-9491778 | Msa0534150:intron | 10.0% |
| !! | AATGATTAAATAATTACAAA+AGG | + | chr4_1:9491964-9491983 | Msa0534150:intron | 10.0% |
| !! | TATATAGTTAATTCATATAA+TGG | - | chr4_1:9492246-9492265 | None:intergenic | 10.0% |
| !!! | AATTTTGTTTTTTTCTTTCT+AGG | + | chr4_1:9490002-9490021 | Msa0534150:intron | 15.0% |
| !!! | CACAATAATATTACTATTTT+AGG | - | chr4_1:9490687-9490706 | None:intergenic | 15.0% |
| !!! | ACATTAATGTTACTATTTTA+GGG | - | chr4_1:9490731-9490750 | None:intergenic | 15.0% |
| !!! | AGTAATATCATTTAAACTTT+TGG | + | chr4_1:9490838-9490857 | Msa0534150:intron | 15.0% |
| !!! | ACTTCAAACATAATTTTTAA+GGG | - | chr4_1:9490889-9490908 | None:intergenic | 15.0% |
| !!! | AACTTCAAACATAATTTTTA+AGG | - | chr4_1:9490890-9490909 | None:intergenic | 15.0% |
| !! | AGAATCAAATTATCTAATTA+AGG | - | chr4_1:9491309-9491328 | None:intergenic | 15.0% |
| !! | TATAATTCAATTGATAGATA+CGG | + | chr4_1:9491620-9491639 | Msa0534150:intron | 15.0% |
| !! | AAATTATTAAGGAAAAAAAG+TGG | - | chr4_1:9491850-9491869 | None:intergenic | 15.0% |
| !! | GCTCAAAAATAAAATTATTA+AGG | - | chr4_1:9491861-9491880 | None:intergenic | 15.0% |
| !! | TGTCAAAAAAAAAAATTACA+AGG | - | chr4_1:9491914-9491933 | None:intergenic | 15.0% |
| !! | TACAAAAGGATATTATTTAT+TGG | + | chr4_1:9491978-9491997 | Msa0534150:intron | 15.0% |
| !! | ACAAAAGGATATTATTTATT+GGG | + | chr4_1:9491979-9491998 | Msa0534150:intron | 15.0% |
| !!! | TATCTTTTTAATAAATGAAG+AGG | - | chr4_1:9492012-9492031 | None:intergenic | 15.0% |
| !!! | TAATTCTAGTTGAAGATTTT+CGG | - | chr4_1:9489942-9489961 | None:intergenic | 20.0% |
| !! | CATAATCAATAATTGATCAT+AGG | - | chr4_1:9490348-9490367 | None:intergenic | 20.0% |
| !! | TATTATTGTTGGTATTATGT+TGG | + | chr4_1:9490596-9490615 | Msa0534150:intron | 20.0% |
| !! | TTATTAGGTGAAATAATAAG+AGG | - | chr4_1:9490643-9490662 | None:intergenic | 20.0% |
| !! | GAATCAGATGTATATTTATT+AGG | - | chr4_1:9490658-9490677 | None:intergenic | 20.0% |
| !!! | ATTAATGTTACTATTTTAGG+GGG | - | chr4_1:9490729-9490748 | None:intergenic | 20.0% |
| !!! | CATTAATGTTACTATTTTAG+GGG | - | chr4_1:9490730-9490749 | None:intergenic | 20.0% |
| !!! | CACATTAATGTTACTATTTT+AGG | - | chr4_1:9490732-9490751 | None:intergenic | 20.0% |
| !! | AAAGATGTTACAGTATATAT+TGG | + | chr4_1:9491088-9491107 | Msa0534150:intron | 20.0% |
| !! | ATATATTGGCATTTACTAAA+AGG | + | chr4_1:9491102-9491121 | Msa0534150:intron | 20.0% |
| !! | ATCAAATTATCTAATTAAGG+TGG | - | chr4_1:9491306-9491325 | None:intergenic | 20.0% |
| !! | TAGATAATTTGATTCTTTAG+TGG | + | chr4_1:9491313-9491332 | Msa0534150:intron | 20.0% |
| !!! | GGTTGATAATATTTATTTGA+TGG | + | chr4_1:9491425-9491444 | Msa0534150:intron | 20.0% |
| !!! | TTGTGATATTTTGTTATTCT+TGG | + | chr4_1:9491456-9491475 | Msa0534150:intron | 20.0% |
| !!! | ATTTTTTAGGACAAATAGTT+TGG | - | chr4_1:9491704-9491723 | None:intergenic | 20.0% |
| !! | GTAAGATTTGATATTTGATA+TGG | - | chr4_1:9491818-9491837 | None:intergenic | 20.0% |
| !! | TAGTTAATTCATATAATGGT+AGG | - | chr4_1:9492242-9492261 | None:intergenic | 20.0% |
| !! | TTAACTATATACAATAACAC+AGG | + | chr4_1:9492255-9492274 | Msa0534150:intron | 20.0% |
| !!! | TGATGAACTTTTTCCATTTT+GGG | + | chr4_1:9489165-9489184 | Msa0534150:CDS | 25.0% |
| !! | AGAAATTTTTGACCTAATGA+AGG | - | chr4_1:9489202-9489221 | None:intergenic | 25.0% |
| ! | TAATAGCAGCAAAATTGAAT+TGG | - | chr4_1:9489330-9489349 | None:intergenic | 25.0% |
| !!! | ATTACTGTTATTTTGTTAGC+TGG | + | chr4_1:9489346-9489365 | Msa0534150:CDS | 25.0% |
| ! | TTCTTGGAAGAATGAATATT+AGG | + | chr4_1:9489374-9489393 | Msa0534150:CDS | 25.0% |
| ! | TCTTGGAAGAATGAATATTA+GGG | + | chr4_1:9489375-9489394 | Msa0534150:CDS | 25.0% |
| ! | TATGTTATTCATCTTTCTTC+TGG | + | chr4_1:9489511-9489530 | Msa0534150:CDS | 25.0% |
| !! | AGTGAATATTTCGTAGTTTT+TGG | + | chr4_1:9489585-9489604 | Msa0534150:intron | 25.0% |
| !!! | ATGATTTTGACCTTAGTTTA+AGG | + | chr4_1:9489704-9489723 | Msa0534150:intron | 25.0% |
| ! | AGAAGTAGTTTACATACATA+AGG | + | chr4_1:9489859-9489878 | Msa0534150:intron | 25.0% |
| !!! | TTGTTTTTTTCTTTCTAGGT+TGG | + | chr4_1:9490006-9490025 | Msa0534150:intron | 25.0% |
| !!! | TGTTTTTTTCTTTCTAGGTT+GGG | + | chr4_1:9490007-9490026 | Msa0534150:intron | 25.0% |
| !!! | TTAATGTTACTATTTTAGGG+GGG | - | chr4_1:9490728-9490747 | None:intergenic | 25.0% |
| ! | TGATATTACTCACATGTAAT+TGG | - | chr4_1:9490828-9490847 | None:intergenic | 25.0% |
| ! | GTAATGAAGAGTTGTTATAT+TGG | + | chr4_1:9490952-9490971 | Msa0534150:intron | 25.0% |
| ! | ATTAGATTAGATGTACCAAA+TGG | + | chr4_1:9490987-9491006 | Msa0534150:intron | 25.0% |
| ! | GATAATGATGTTGAAAATGA+AGG | + | chr4_1:9491063-9491082 | Msa0534150:intron | 25.0% |
| ! | TCATTACAATCAACATTACA+AGG | - | chr4_1:9491949-9491968 | None:intergenic | 25.0% |
| !!! | TTGTTTTTATCTCTCTCAAA+CGG | + | chr4_1:9492099-9492118 | Msa0534150:intron | 25.0% |
| AAGCATGGTCAAAAAGAAAT+GGG | + | chr4_1:9489057-9489076 | Msa0534150:CDS | 30.0% | |
| ATGCATCAGTACTAATATGT+TGG | + | chr4_1:9489113-9489132 | Msa0534150:CDS | 30.0% | |
| TGCATCAGTACTAATATGTT+GGG | + | chr4_1:9489114-9489133 | Msa0534150:CDS | 30.0% | |
| !! | GTGATGAACTTTTTCCATTT+TGG | + | chr4_1:9489164-9489183 | Msa0534150:CDS | 30.0% |
| !! | GATGAACTTTTTCCATTTTG+GGG | + | chr4_1:9489166-9489185 | Msa0534150:CDS | 30.0% |
| !!! | AACACAACCATTTTTTCCTA+TGG | + | chr4_1:9489288-9489307 | Msa0534150:CDS | 30.0% |
| AAATAAACAAGTGAAGCCAT+AGG | - | chr4_1:9489307-9489326 | None:intergenic | 30.0% | |
| !!! | TGGTGGATTTTTGTATCATT+GGG | + | chr4_1:9489465-9489484 | Msa0534150:CDS | 30.0% |
| !! | ATTCATCTTTCTTCTGGAAT+TGG | + | chr4_1:9489517-9489536 | Msa0534150:CDS | 30.0% |
| CGTGAAAACATATAGATAGA+TGG | - | chr4_1:9489678-9489697 | None:intergenic | 30.0% | |
| ! | GTTTGAGATACGATAACTTA+TGG | + | chr4_1:9489782-9489801 | Msa0534150:intron | 30.0% |
| CAATAAAGATTGAATCTCAG+TGG | + | chr4_1:9490401-9490420 | Msa0534150:intron | 30.0% | |
| !! | ATGGGAAGTGTTATTATTGT+TGG | + | chr4_1:9490585-9490604 | Msa0534150:intron | 30.0% |
| TATTGTTGGTATTATGTTGG+AGG | + | chr4_1:9490599-9490618 | Msa0534150:intron | 30.0% | |
| !! | ACTAAAGTTTTGACATGAAG+TGG | + | chr4_1:9490752-9490771 | Msa0534150:intron | 30.0% |
| TCCTCTACTTAAGTAACTTT+AGG | + | chr4_1:9491017-9491036 | Msa0534150:intron | 30.0% | |
| ACCTAAAGTTACTTAAGTAG+AGG | - | chr4_1:9491021-9491040 | None:intergenic | 30.0% | |
| TATTGGCATTTACTAAAAGG+TGG | + | chr4_1:9491105-9491124 | Msa0534150:intron | 30.0% | |
| ATTGGCATTTACTAAAAGGT+GGG | + | chr4_1:9491106-9491125 | Msa0534150:intron | 30.0% | |
| ! | GGTGGATTCTTAAAATAAAG+AGG | - | chr4_1:9491288-9491307 | None:intergenic | 30.0% |
| GGATCTATAGAATATTCCAA+CGG | + | chr4_1:9491334-9491353 | Msa0534150:intron | 30.0% | |
| ! | TAGAATATTCCAACGGTTTT+TGG | + | chr4_1:9491341-9491360 | Msa0534150:intron | 30.0% |
| TGGCTAAATTTCACTTGTAA+GGG | - | chr4_1:9491681-9491700 | None:intergenic | 30.0% | |
| !!! | TTTTAGGACAAATAGTTTGG+TGG | - | chr4_1:9491701-9491720 | None:intergenic | 30.0% |
| ! | TGTCCATGCAATTTGTTTAT+AGG | + | chr4_1:9492179-9492198 | Msa0534150:intron | 30.0% |
| TATGAAGAGAAGAATTAGTG+TGG | - | chr4_1:9492491-9492510 | None:intergenic | 30.0% | |
| !! | AATTTCATCTGCTTTTGATG+AGG | - | chr4_1:9492638-9492657 | None:intergenic | 30.0% |
| TAAACAAAGGAGACAACTCA+TGG | + | chr4_1:9488972-9488991 | Msa0534150:CDS | 35.0% | |
| CAAGCATGGTCAAAAAGAAA+TGG | + | chr4_1:9489056-9489075 | Msa0534150:CDS | 35.0% | |
| ! | GGCTATGAATTCAGCTTTTA+TGG | + | chr4_1:9489078-9489097 | Msa0534150:CDS | 35.0% |
| ! | GGTACTTTTATGTTACCGTA+TGG | + | chr4_1:9489135-9489154 | Msa0534150:CDS | 35.0% |
| ! | TTATGTTACCGTATGGCTTT+TGG | + | chr4_1:9489142-9489161 | Msa0534150:CDS | 35.0% |
| !!! | CTTTTTCCATTTTGGGGTAA+AGG | + | chr4_1:9489172-9489191 | Msa0534150:CDS | 35.0% |
| AGTGAAGCCATAGGAAAAAA+TGG | - | chr4_1:9489298-9489317 | None:intergenic | 35.0% | |
| GAAGAATGAATATTAGGGCT+TGG | + | chr4_1:9489380-9489399 | Msa0534150:CDS | 35.0% | |
| AATGAATATTAGGGCTTGGA+TGG | + | chr4_1:9489384-9489403 | Msa0534150:CDS | 35.0% | |
| TAAGAGAAAATGAGCCAAAG+AGG | - | chr4_1:9489418-9489437 | None:intergenic | 35.0% | |
| ! | CTCATTTTCTCTTACACTGT+TGG | + | chr4_1:9489424-9489443 | Msa0534150:CDS | 35.0% |
| !! | TGTTGGTGCTTTTAGCATAT+GGG | + | chr4_1:9489441-9489460 | Msa0534150:CDS | 35.0% |
| !!! | GTGGTGGATTTTTGTATCAT+TGG | + | chr4_1:9489464-9489483 | Msa0534150:CDS | 35.0% |
| !! | GGTGGATTTTTGTATCATTG+GGG | + | chr4_1:9489466-9489485 | Msa0534150:CDS | 35.0% |
| TGTTGTTGCAAGAACAATCA+TGG | + | chr4_1:9489642-9489661 | Msa0534150:intron | 35.0% | |
| CCAAACACATCCTTAAACTA+AGG | - | chr4_1:9489717-9489736 | None:intergenic | 35.0% | |
| CCTTAGTTTAAGGATGTGTT+TGG | + | chr4_1:9489714-9489733 | Msa0534150:intron | 35.0% | |
| AATATGCAAGTACTTGTGTC+AGG | - | chr4_1:9489762-9489781 | None:intergenic | 35.0% | |
| TAAGCAACACATTGTTTGGT+GGG | - | chr4_1:9490062-9490081 | None:intergenic | 35.0% | |
| ATAAGCAACACATTGTTTGG+TGG | - | chr4_1:9490063-9490082 | None:intergenic | 35.0% | |
| AGCATAAGCAACACATTGTT+TGG | - | chr4_1:9490066-9490085 | None:intergenic | 35.0% | |
| AAAGAAAGCAACATCCAAAG+TGG | - | chr4_1:9490220-9490239 | None:intergenic | 35.0% | |
| !! | ACTTTGGATGTTGCTTTCTT+TGG | + | chr4_1:9490219-9490238 | Msa0534150:CDS | 35.0% |
| TGCTTTCTTTGGTAAACCTT+CGG | + | chr4_1:9490230-9490249 | Msa0534150:CDS | 35.0% | |
| ACGCAATAATGTATCGTAAG+TGG | - | chr4_1:9490445-9490464 | None:intergenic | 35.0% | |
| ATTGTGACTAAAGTCTTGAC+AGG | + | chr4_1:9490701-9490720 | Msa0534150:intron | 35.0% | |
| TTGTGACTAAAGTCTTGACA+GGG | + | chr4_1:9490702-9490721 | Msa0534150:intron | 35.0% | |
| TTAGATGTACCAAATGGACA+AGG | + | chr4_1:9490993-9491012 | Msa0534150:intron | 35.0% | |
| TTGGCATTTACTAAAAGGTG+GGG | + | chr4_1:9491107-9491126 | Msa0534150:intron | 35.0% | |
| ! | ATAGTGATGGGAATACTATC+TGG | + | chr4_1:9491170-9491189 | Msa0534150:CDS | 35.0% |
| ! | TAGTGATGGGAATACTATCT+GGG | + | chr4_1:9491171-9491190 | Msa0534150:CDS | 35.0% |
| GAAGTCAACTCTTCTACAAA+AGG | + | chr4_1:9491229-9491248 | Msa0534150:CDS | 35.0% | |
| TTCAAAGAACCAAAAACCGT+TGG | - | chr4_1:9491353-9491372 | None:intergenic | 35.0% | |
| GCAGTCTCTCTTCAAAATAT+TGG | + | chr4_1:9491404-9491423 | Msa0534150:intron | 35.0% | |
| GGCTAAATTTCACTTGTAAG+GGG | - | chr4_1:9491680-9491699 | None:intergenic | 35.0% | |
| GTGGCTAAATTTCACTTGTA+AGG | - | chr4_1:9491682-9491701 | None:intergenic | 35.0% | |
| ! | GATATGGCTCTGTTATTACT+TGG | - | chr4_1:9491802-9491821 | None:intergenic | 35.0% |
| ATGGACAAGAGGTAACAAAT+AGG | - | chr4_1:9492166-9492185 | None:intergenic | 35.0% | |
| AAACAAATTGCATGGACAAG+AGG | - | chr4_1:9492177-9492196 | None:intergenic | 35.0% | |
| CCTCCTATAAACAAATTGCA+TGG | - | chr4_1:9492185-9492204 | None:intergenic | 35.0% | |
| ! | CCATGCAATTTGTTTATAGG+AGG | + | chr4_1:9492182-9492201 | Msa0534150:intron | 35.0% |
| AATGGTAGGAAAACATGCAT+AGG | - | chr4_1:9492228-9492247 | None:intergenic | 35.0% | |
| AATATGAGTCTGCAAAGATC+TGG | - | chr4_1:9492361-9492380 | None:intergenic | 35.0% | |
| TCAGTTCTTGAAGCAATTAG+TGG | + | chr4_1:9492429-9492448 | Msa0534150:CDS | 35.0% | |
| ! | TTTAGCCATTGTGGTGATGA+AGG | - | chr4_1:9488956-9488975 | None:intergenic | 40.0% |
| TCACCACAATGGCTAAACAA+AGG | + | chr4_1:9488959-9488978 | Msa0534150:CDS | 40.0% | |
| ! | TCTCCTTTGTTTAGCCATTG+TGG | - | chr4_1:9488965-9488984 | None:intergenic | 40.0% |
| CATGCTTTGTAGACCAACTA+GGG | - | chr4_1:9489014-9489033 | None:intergenic | 40.0% | |
| TGTAATCCTCTATGCAAGCA+TGG | + | chr4_1:9489042-9489061 | Msa0534150:CDS | 40.0% | |
| ! | TTTTGACCATGCTTGCATAG+AGG | - | chr4_1:9489051-9489070 | None:intergenic | 40.0% |
| GTTCATCACCAAAAGCCATA+CGG | - | chr4_1:9489153-9489172 | None:intergenic | 40.0% | |
| TTGAAGAAGTGAGTGCTTTC+AGG | - | chr4_1:9489244-9489263 | None:intergenic | 40.0% | |
| AGCACTCACTTCTTCAAGAA+TGG | + | chr4_1:9489247-9489266 | Msa0534150:CDS | 40.0% | |
| TTGTTAGCTGGATCTGTTCT+TGG | + | chr4_1:9489358-9489377 | Msa0534150:CDS | 40.0% | |
| !! | CTGTTGGTGCTTTTAGCATA+TGG | + | chr4_1:9489440-9489459 | Msa0534150:CDS | 40.0% |
| !! | GTTGGTGCTTTTAGCATATG+GGG | + | chr4_1:9489442-9489461 | Msa0534150:CDS | 40.0% |
| !! | CATCTTTCTTCTGGAATTGG+TGG | + | chr4_1:9489520-9489539 | Msa0534150:CDS | 40.0% |
| ! | CTAGTTGAAGATTTTCGGCT+CGG | - | chr4_1:9489937-9489956 | None:intergenic | 40.0% |
| !! | AATGTGTTGCTTATGCTAGC+AGG | + | chr4_1:9490069-9490088 | Msa0534150:CDS | 40.0% |
| ! | GAGTCAATGTTTGCTGCATA+TGG | - | chr4_1:9490141-9490160 | None:intergenic | 40.0% |
| TTTGGTAAACCTTCGGTGAT+TGG | + | chr4_1:9490237-9490256 | Msa0534150:CDS | 40.0% | |
| TTTATAGACAAACCTGCTCC+TGG | - | chr4_1:9490303-9490322 | None:intergenic | 40.0% | |
| CATTTACTAAAAGGTGGGGT+TGG | + | chr4_1:9491111-9491130 | Msa0534150:intron | 40.0% | |
| !! | TACTATCTGGGAGTATTCCA+TGG | + | chr4_1:9491183-9491202 | Msa0534150:CDS | 40.0% |
| !! | TATTCCATGGTGGACTATGA+TGG | + | chr4_1:9491196-9491215 | Msa0534150:CDS | 40.0% |
| ! | GTAGAAGAGTTGACTTCTTG+TGG | - | chr4_1:9491226-9491245 | None:intergenic | 40.0% |
| TTTGAAGAGAGACTGCAACT+AGG | - | chr4_1:9491400-9491419 | None:intergenic | 40.0% | |
| GACAAGAGGTAACAAATAGG+AGG | - | chr4_1:9492163-9492182 | None:intergenic | 40.0% | |
| GGAAAACATGCATAGGATCA+AGG | - | chr4_1:9492221-9492240 | None:intergenic | 40.0% | |
| ATGTGTGTGAAACACTCCAA+GGG | - | chr4_1:9492290-9492309 | None:intergenic | 40.0% | |
| TCTTTGCAGACTCATATTGC+CGG | + | chr4_1:9492363-9492382 | Msa0534150:CDS | 40.0% | |
| GAAGAGAAGAATTAGTGTGG+TGG | - | chr4_1:9492488-9492507 | None:intergenic | 40.0% | |
| TACAACTGTTCATACCCTTG+AGG | + | chr4_1:9492509-9492528 | Msa0534150:CDS | 40.0% | |
| AAGTATGACCCAACTAAGCA+TGG | + | chr4_1:9492610-9492629 | Msa0534150:CDS | 40.0% | |
| ATGAGGATCCATGCTTAGTT+GGG | - | chr4_1:9492621-9492640 | None:intergenic | 40.0% | |
| ! | AAGTATCGCCCTATGTTACT+GGG | + | chr4_1:9492659-9492678 | Msa0534150:CDS | 40.0% |
| CTCTTGGTATGCTGTTGGAA+GGG | - | chr4_1:9488927-9488946 | None:intergenic | 45.0% | |
| ACCTTCCTTCATCACCACAA+TGG | + | chr4_1:9488948-9488967 | Msa0534150:CDS | 45.0% | |
| ATGACAGCATCAACCCTAGT+TGG | + | chr4_1:9488998-9489017 | Msa0534150:CDS | 45.0% | |
| GCATGCTTTGTAGACCAACT+AGG | - | chr4_1:9489015-9489034 | None:intergenic | 45.0% | |
| GCATAGAGGATTACAAGACC+TGG | - | chr4_1:9489037-9489056 | None:intergenic | 45.0% | |
| ! | GGTAAAGGTGCACCTTCATT+AGG | + | chr4_1:9489187-9489206 | Msa0534150:CDS | 45.0% |
| ! | GGATGGCTTTTGTACCTCTT+TGG | + | chr4_1:9489401-9489420 | Msa0534150:CDS | 45.0% |
| !! | TGGGGTGTCATTGATTTCTC+TGG | + | chr4_1:9489484-9489503 | Msa0534150:CDS | 45.0% |
| !! | GGTGTCATTGATTTCTCTGG+TGG | + | chr4_1:9489487-9489506 | Msa0534150:CDS | 45.0% |
| TGGCTTCACTGCAGCTTATT+GGG | + | chr4_1:9489540-9489559 | Msa0534150:CDS | 45.0% | |
| ! | TTTCTTTCTAGGTTGGGCCA+AGG | + | chr4_1:9490013-9490032 | Msa0534150:intron | 45.0% |
| GCCAAGGTTGAAGAGTGATA+GGG | + | chr4_1:9490029-9490048 | Msa0534150:CDS | 45.0% | |
| TCCCTATCACTCTTCAACCT+TGG | - | chr4_1:9490033-9490052 | None:intergenic | 45.0% | |
| TAGCAGGTGCAGGATTGTTA+TGG | + | chr4_1:9490085-9490104 | Msa0534150:CDS | 45.0% | |
| AGGTGCAGGATTGTTATGGA+TGG | + | chr4_1:9490089-9490108 | Msa0534150:CDS | 45.0% | |
| GGTGCAGGATTGTTATGGAT+GGG | + | chr4_1:9490090-9490109 | Msa0534150:CDS | 45.0% | |
| CAGGATTGTTATGGATGGGT+TGG | + | chr4_1:9490094-9490113 | Msa0534150:CDS | 45.0% | |
| !! | TTGTTATGGATGGGTTGGTC+AGG | + | chr4_1:9490099-9490118 | Msa0534150:CDS | 45.0% |
| !! | ATGGGTTGGTCAGGATTCAA+TGG | + | chr4_1:9490108-9490127 | Msa0534150:CDS | 45.0% |
| GTAGAGGATCCTTGTCCATT+TGG | - | chr4_1:9491005-9491024 | None:intergenic | 45.0% | |
| TCATGGGCAGCTATAGTGAT+GGG | + | chr4_1:9491158-9491177 | Msa0534150:CDS | 45.0% | |
| !! | TATCTGGGAGTATTCCATGG+TGG | + | chr4_1:9491186-9491205 | Msa0534150:CDS | 45.0% |
| ! | GAAGAGTTGACTTCTTGTGG+AGG | - | chr4_1:9491223-9491242 | None:intergenic | 45.0% |
| ! | CTTGCTGTGTTGTGTGACTT+GGG | - | chr4_1:9491510-9491529 | None:intergenic | 45.0% |
| CAAGTCACACAACACAGCAA+GGG | + | chr4_1:9491509-9491528 | Msa0534150:intron | 45.0% | |
| ATCTCTCTCAAACGGTGACA+CGG | + | chr4_1:9492107-9492126 | Msa0534150:intron | 45.0% | |
| CATGTGTGTGAAACACTCCA+AGG | - | chr4_1:9492291-9492310 | None:intergenic | 45.0% | |
| AGTGTTTCACACACATGCTG+TGG | + | chr4_1:9492294-9492313 | Msa0534150:CDS | 45.0% | |
| TATTGCCGGTGACCAATTCA+AGG | + | chr4_1:9492377-9492396 | Msa0534150:CDS | 45.0% | |
| ATTGCCGGTGACCAATTCAA+GGG | + | chr4_1:9492378-9492397 | Msa0534150:CDS | 45.0% | |
| ATAGAAGGCTCCCCTTGAAT+TGG | - | chr4_1:9492392-9492411 | None:intergenic | 45.0% | |
| AATTCAAGGGGAGCCTTCTA+TGG | + | chr4_1:9492391-9492410 | Msa0534150:CDS | 45.0% | |
| ATTCAAGGGGAGCCTTCTAT+GGG | + | chr4_1:9492392-9492411 | Msa0534150:CDS | 45.0% | |
| ! | TGGCAGCACTTTTCATCACT+GGG | + | chr4_1:9492449-9492468 | Msa0534150:CDS | 45.0% |
| CGAGGAAGCTTATGCACTTT+GGG | + | chr4_1:9492576-9492595 | Msa0534150:CDS | 45.0% | |
| GAGGAAGCTTATGCACTTTG+GGG | + | chr4_1:9492577-9492596 | Msa0534150:CDS | 45.0% | |
| GATGAGGATCCATGCTTAGT+TGG | - | chr4_1:9492622-9492641 | None:intergenic | 45.0% | |
| !! | GAAGTATCGCCCTATGTTAC+TGG | + | chr4_1:9492658-9492677 | Msa0534150:CDS | 45.0% |
| AGTATCGCCCTATGTTACTG+GGG | + | chr4_1:9492660-9492679 | Msa0534150:CDS | 45.0% | |
| !!! | TTTATTTATTTTTTTCAAAA+TGG | + | chr4_1:9490566-9490585 | Msa0534150:intron | 5.0% |
| !!! | TTATTTATTTTTTTCAAAAT+GGG | + | chr4_1:9490567-9490586 | Msa0534150:intron | 5.0% |
| GCTCTTGGTATGCTGTTGGA+AGG | - | chr4_1:9488928-9488947 | None:intergenic | 50.0% | |
| AGGTGCTCTTGGTATGCTGT+TGG | - | chr4_1:9488932-9488951 | None:intergenic | 50.0% | |
| !! | GTGATGAAGGAAGGTGCTCT+TGG | - | chr4_1:9488943-9488962 | None:intergenic | 50.0% |
| ! | GCCATTGTGGTGATGAAGGA+AGG | - | chr4_1:9488952-9488971 | None:intergenic | 50.0% |
| ! | GTTGGTCTACAAAGCATGCC+AGG | + | chr4_1:9489016-9489035 | Msa0534150:CDS | 50.0% |
| GGTGCACCTTTACCCCAAAA+TGG | - | chr4_1:9489181-9489200 | None:intergenic | 50.0% | |
| ! | GGTGCTTTTAGCATATGGGG+TGG | + | chr4_1:9489445-9489464 | Msa0534150:CDS | 50.0% |
| ! | GCTTTTAGCATATGGGGTGG+TGG | + | chr4_1:9489448-9489467 | Msa0534150:CDS | 50.0% |
| GTGGCTTCACTGCAGCTTAT+TGG | + | chr4_1:9489539-9489558 | Msa0534150:CDS | 50.0% | |
| GGCCAAGGTTGAAGAGTGAT+AGG | + | chr4_1:9490028-9490047 | Msa0534150:CDS | 50.0% | |
| TTGCTTATGCTAGCAGGTGC+AGG | + | chr4_1:9490075-9490094 | Msa0534150:CDS | 50.0% | |
| ! | GGTTGGTCAGGATTCAATGG+TGG | + | chr4_1:9490111-9490130 | Msa0534150:CDS | 50.0% |
| ! | CTGCAACTAGTCTCCTTGTG+TGG | + | chr4_1:9490193-9490212 | Msa0534150:CDS | 50.0% |
| TCTCCTTGTGTGGACCACTT+TGG | + | chr4_1:9490203-9490222 | Msa0534150:CDS | 50.0% | |
| CATCCAAAGTGGTCCACACA+AGG | - | chr4_1:9490209-9490228 | None:intergenic | 50.0% | |
| TGAACAGCACCAATCACCGA+AGG | - | chr4_1:9490249-9490268 | None:intergenic | 50.0% | |
| !! | TTCGGTGATTGGTGCTGTTC+AGG | + | chr4_1:9490248-9490267 | Msa0534150:CDS | 50.0% |
| !! | TCGGTGATTGGTGCTGTTCA+GGG | + | chr4_1:9490249-9490268 | Msa0534150:CDS | 50.0% |
| GCTGTTCAGGGTATGATGAC+AGG | + | chr4_1:9490261-9490280 | Msa0534150:CDS | 50.0% | |
| ! | GGACTTGTTTGCATCACTCC+AGG | + | chr4_1:9490282-9490301 | Msa0534150:CDS | 50.0% |
| GTCATGGGCAGCTATAGTGA+TGG | + | chr4_1:9491157-9491176 | Msa0534150:CDS | 50.0% | |
| AGGACCATCATAGTCCACCA+TGG | - | chr4_1:9491203-9491222 | None:intergenic | 50.0% | |
| ! | CCTTGCTGTGTTGTGTGACT+TGG | - | chr4_1:9491511-9491530 | None:intergenic | 50.0% |
| CCAAGTCACACAACACAGCA+AGG | + | chr4_1:9491508-9491527 | Msa0534150:intron | 50.0% | |
| ACACAGGTAGATGACACCCT+TGG | + | chr4_1:9492271-9492290 | Msa0534150:intron | 50.0% | |
| TTTCACACACATGCTGTGGC+CGG | + | chr4_1:9492298-9492317 | Msa0534150:CDS | 50.0% | |
| GTTCTGCTAAGAGACCTGTG+AGG | - | chr4_1:9492339-9492358 | None:intergenic | 50.0% | |
| TTGCCGGTGACCAATTCAAG+GGG | + | chr4_1:9492379-9492398 | Msa0534150:CDS | 50.0% | |
| ! | GTGGCAGCACTTTTCATCAC+TGG | + | chr4_1:9492448-9492467 | Msa0534150:CDS | 50.0% |
| ! | CAGCACTTTTCATCACTGGG+TGG | + | chr4_1:9492452-9492471 | Msa0534150:CDS | 50.0% |
| TGGTCGTTCGACATCCTCAA+GGG | - | chr4_1:9492526-9492545 | None:intergenic | 50.0% | |
| ACTGGCGATGATGCTGTACA+CGG | + | chr4_1:9492553-9492572 | Msa0534150:CDS | 50.0% | |
| GCGAGGAAGCTTATGCACTT+TGG | + | chr4_1:9492575-9492594 | Msa0534150:CDS | 50.0% | |
| !! | GCTTATGCACTTTGGGGTGA+TGG | + | chr4_1:9492583-9492602 | Msa0534150:CDS | 50.0% |
| CCTCTTGCCCCAGTAACATA+GGG | - | chr4_1:9492670-9492689 | None:intergenic | 50.0% | |
| ACCTCTTGCCCCAGTAACAT+AGG | - | chr4_1:9492671-9492690 | None:intergenic | 50.0% | |
| GTTTGCATCACTCCAGGAGC+AGG | + | chr4_1:9490288-9490307 | Msa0534150:CDS | 55.0% | |
| !! | AAGGTGGGGTTGGTTGCAAC+TGG | + | chr4_1:9491121-9491140 | Msa0534150:intron | 55.0% |
| CTGTGAGGAGGCCTCCTAAA+AGG | - | chr4_1:9492324-9492343 | None:intergenic | 55.0% | |
| !! | CTTTTAGGAGGCCTCCTCAC+AGG | + | chr4_1:9492322-9492341 | Msa0534150:CDS | 55.0% |
| CTGCTAAGAGACCTGTGAGG+AGG | - | chr4_1:9492336-9492355 | None:intergenic | 55.0% | |
| GCTCCCCTTGAATTGGTCAC+CGG | - | chr4_1:9492385-9492404 | None:intergenic | 55.0% | |
| CTGGTCGTTCGACATCCTCA+AGG | - | chr4_1:9492527-9492546 | None:intergenic | 55.0% | |
| CCCTATGTTACTGGGGCAAG+AGG | + | chr4_1:9492667-9492686 | Msa0534150:CDS | 55.0% | |
| !! | TGGGGTTGGTTGCAACTGGC+AGG | + | chr4_1:9491125-9491144 | Msa0534150:intron | 60.0% |
| !! | GGGGTTGGTTGCAACTGGCA+GGG | + | chr4_1:9491126-9491145 | Msa0534150:intron | 60.0% |
| TGGCAGGGCTTGTGCAGTCA+TGG | + | chr4_1:9491141-9491160 | Msa0534150:intron | 60.0% | |
| GGCAGGGCTTGTGCAGTCAT+GGG | + | chr4_1:9491142-9491161 | Msa0534150:intron | 60.0% | |
| ! | CATGCTGTGGCCGGCCTTTT+AGG | + | chr4_1:9492307-9492326 | Msa0534150:CDS | 60.0% |
| GAGGAGGCCTCCTAAAAGGC+CGG | - | chr4_1:9492320-9492339 | None:intergenic | 60.0% | |
| AGGGGAGCCTTCTATGGGCA+TGG | + | chr4_1:9492397-9492416 | Msa0534150:CDS | 60.0% | |
| GGAGCCTTCTATGGGCATGG+CGG | + | chr4_1:9492400-9492419 | Msa0534150:CDS | 60.0% | |
| TCGAACGACCAGCTCGAGAC+TGG | + | chr4_1:9492535-9492554 | Msa0534150:CDS | 60.0% | |
| CATCATCGCCAGTCTCGAGC+TGG | - | chr4_1:9492546-9492565 | None:intergenic | 60.0% | |
| CGATGATGCTGTACACGGCG+AGG | + | chr4_1:9492558-9492577 | Msa0534150:CDS | 60.0% | |
| ! | GCTGTGGCCGGCCTTTTAGG+AGG | + | chr4_1:9492310-9492329 | Msa0534150:CDS | 65.0% |
| GCCTTCTATGGGCATGGCGG+CGG | + | chr4_1:9492403-9492422 | Msa0534150:CDS | 65.0% | |
| GCCGCCGCCATGCCCATAGA+AGG | - | chr4_1:9492407-9492426 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 9488920 | 9492708 | 9488920 | ID=Msa0534150;Name=Msa0534150 |
| chr4_1 | mRNA | 9488920 | 9492708 | 9488920 | ID=Msa0534150-mRNA-1;Parent=Msa0534150;Name=Msa0534150-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|4|0|487 |
| chr4_1 | exon | 9488920 | 9489561 | 9488920 | ID=Msa0534150-mRNA-1:exon:3100;Parent=Msa0534150-mRNA-1 |
| chr4_1 | exon | 9490024 | 9490309 | 9490024 | ID=Msa0534150-mRNA-1:exon:3101;Parent=Msa0534150-mRNA-1 |
| chr4_1 | exon | 9491147 | 9491250 | 9491147 | ID=Msa0534150-mRNA-1:exon:3102;Parent=Msa0534150-mRNA-1 |
| chr4_1 | exon | 9492277 | 9492708 | 9492277 | ID=Msa0534150-mRNA-1:exon:3103;Parent=Msa0534150-mRNA-1 |
| chr4_1 | CDS | 9488920 | 9489561 | 9488920 | ID=Msa0534150-mRNA-1:cds;Parent=Msa0534150-mRNA-1 |
| chr4_1 | CDS | 9490024 | 9490309 | 9490024 | ID=Msa0534150-mRNA-1:cds;Parent=Msa0534150-mRNA-1 |
| chr4_1 | CDS | 9491147 | 9491250 | 9491147 | ID=Msa0534150-mRNA-1:cds;Parent=Msa0534150-mRNA-1 |
| chr4_1 | CDS | 9492277 | 9492708 | 9492277 | ID=Msa0534150-mRNA-1:cds;Parent=Msa0534150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
