Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0631110 | Msa1121480 | 0.806230 | 9.098978e-50 | -8.615850e-47 |
| Msa0631110 | Msa1121490 | 0.830236 | 3.289797e-55 | -8.615850e-47 |
| Msa0631110 | Msa1244250 | 0.809520 | 1.816835e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631110 | MtrunA17_Chr4g0008511 | 70.732 | 41 | 10 | 2 | 101 | 139 | 112 | 152 | 7.87e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAACCATTGATCCATAAA+AGG | 0.225799 | 4_3:+13738152 | None:intergenic |
| TTACATCTTTAACTCCCTTT+AGG | 0.271434 | 4_3:+13737466 | None:intergenic |
| TAATCTCATATGCATTTATA+TGG | 0.341656 | 4_3:+13738037 | None:intergenic |
| CTGTTCTTGTGGGAAATTGA+TGG | 0.370305 | 4_3:-13737142 | Msa0631110:CDS |
| AAATGTTAACCGTTGATAGC+TGG | 0.412677 | 4_3:-13738254 | Msa0631110:CDS |
| TCGGTATTAGCTGTTCTTGT+GGG | 0.424515 | 4_3:-13737152 | Msa0631110:CDS |
| GTCCTTCAAGTTACTTCCAA+TGG | 0.447866 | 4_3:+13737488 | None:intergenic |
| TCCGTATCCATAGCTGGTAT+TGG | 0.458389 | 4_3:-13738078 | Msa0631110:CDS |
| CAATAAATTAAAGTTCAAGT+TGG | 0.466657 | 4_3:-13737247 | Msa0631110:intron |
| AATGTTAACCGTTGATAGCT+GGG | 0.476967 | 4_3:-13738253 | Msa0631110:CDS |
| AAACTTGCAGTGGTGCTGTT+CGG | 0.481141 | 4_3:-13738218 | Msa0631110:CDS |
| GTCGGTATTAGCTGTTCTTG+TGG | 0.488311 | 4_3:-13737153 | Msa0631110:CDS |
| ATTGGACAGTCTTGTCTTCG+TGG | 0.495529 | 4_3:-13738060 | Msa0631110:CDS |
| TCCTTGTCCGTATCCATAGC+TGG | 0.501999 | 4_3:-13738084 | Msa0631110:CDS |
| ATCCATTGGAAGTAACTTGA+AGG | 0.506874 | 4_3:-13737490 | Msa0631110:CDS |
| AAGTAACTTGAAGGACCTAA+AGG | 0.509323 | 4_3:-13737481 | Msa0631110:CDS |
| AGAGAAACTTGCAGTGGCGC+TGG | 0.509799 | 4_3:-13738132 | Msa0631110:CDS |
| AGTAACTTGAAGGACCTAAA+GGG | 0.521384 | 4_3:-13737480 | Msa0631110:CDS |
| AGACTGTCCAATACCAGCTA+TGG | 0.531844 | 4_3:+13738071 | None:intergenic |
| AGCAGGGACTCAAAATCCAT+TGG | 0.531979 | 4_3:-13737504 | Msa0631110:intron |
| AAAGCTGCAGTAGGAGTGAT+TGG | 0.535807 | 4_3:-13737191 | Msa0631110:CDS |
| AGAAGGAGAATACATGATGA+AGG | 0.560442 | 4_3:-13738175 | Msa0631110:CDS |
| TCCAATACCAGCTATGGATA+CGG | 0.563755 | 4_3:+13738077 | None:intergenic |
| CACTAGATCCCAGCTATCAA+CGG | 0.564150 | 4_3:+13738245 | None:intergenic |
| AAACTTGCAGTGGCGCTGGT+CGG | 0.593227 | 4_3:-13738128 | Msa0631110:CDS |
| AGTGGCGCTGGTCGGAACAA+AGG | 0.612283 | 4_3:-13738120 | Msa0631110:CDS |
| TCATGTGTGAAAGCTGCAGT+AGG | 0.618233 | 4_3:-13737200 | Msa0631110:CDS |
| TTGATAGCTGGGATCTAGTG+AGG | 0.626146 | 4_3:-13738242 | Msa0631110:CDS |
| ACCAGCTATGGATACGGACA+AGG | 0.626604 | 4_3:+13738083 | None:intergenic |
| TCTTGAAAGAGAACTCGGAA+AGG | 0.638516 | 4_3:+13738013 | None:intergenic |
| AGCTATGGATACGGACAAGG+AGG | 0.651719 | 4_3:+13738086 | None:intergenic |
| CTAGTGAGGAAAACTTGCAG+TGG | 0.663126 | 4_3:-13738228 | Msa0631110:CDS |
| TGGACGATTCAGAGCTCATG+AGG | 0.667695 | 4_3:-13737227 | Msa0631110:CDS |
| GCTATGGATACGGACAAGGA+GGG | 0.696572 | 4_3:+13738087 | None:intergenic |
| ATGGTTAGAGAAACTTGCAG+TGG | 0.701058 | 4_3:-13738138 | Msa0631110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCTCATATGCATTTATA+TGG | + | chr4_3:13737355-13737374 | None:intergenic | 20.0% |
| !!! | GTTTTAGAACTTATTTTGTT+TGG | - | chr4_3:13737413-13737432 | Msa0631110:intron | 20.0% |
| !!! | TGATGATCATAGATTAATTT+TGG | - | chr4_3:13737962-13737981 | Msa0631110:intron | 20.0% |
| !! | CAATAAATTAAAGTTCAAGT+TGG | - | chr4_3:13738142-13738161 | Msa0631110:CDS | 20.0% |
| !! | TAATCTCATATGCATTTATA+TGG | + | chr4_3:13737355-13737374 | None:intergenic | 20.0% |
| !!! | GTTTTAGAACTTATTTTGTT+TGG | - | chr4_3:13737413-13737432 | Msa0631110:intron | 20.0% |
| !!! | TGATGATCATAGATTAATTT+TGG | - | chr4_3:13737962-13737981 | Msa0631110:intron | 20.0% |
| !! | CAATAAATTAAAGTTCAAGT+TGG | - | chr4_3:13738142-13738161 | Msa0631110:CDS | 20.0% |
| !! | TTTTATGATTGTGTTAGAGA+AGG | - | chr4_3:13737197-13737216 | Msa0631110:CDS | 25.0% |
| !!! | AGAACTTATTTTGTTTGGTT+TGG | - | chr4_3:13737418-13737437 | Msa0631110:intron | 25.0% |
| ! | TTATTGGTCATAATCTATGA+CGG | - | chr4_3:13737466-13737485 | Msa0631110:intron | 25.0% |
| ! | TTCCACAAAACTTAAATTGA+CGG | - | chr4_3:13737523-13737542 | Msa0631110:intron | 25.0% |
| !!! | TGATTAATCTTTGTTGTTGT+CGG | - | chr4_3:13737653-13737672 | Msa0631110:intron | 25.0% |
| ! | CGACATTATTCATGATTATT+GGG | - | chr4_3:13737692-13737711 | Msa0631110:intron | 25.0% |
| ! | GACATTATTCATGATTATTG+GGG | - | chr4_3:13737693-13737712 | Msa0631110:intron | 25.0% |
| ! | AACTGTTTGAACTGAAAATT+GGG | - | chr4_3:13738030-13738049 | Msa0631110:CDS | 25.0% |
| !! | AATGAAGTAATGATGTTTTG+TGG | - | chr4_3:13738076-13738095 | Msa0631110:CDS | 25.0% |
| !! | TTTTATGATTGTGTTAGAGA+AGG | - | chr4_3:13737197-13737216 | Msa0631110:CDS | 25.0% |
| !!! | AGAACTTATTTTGTTTGGTT+TGG | - | chr4_3:13737418-13737437 | Msa0631110:intron | 25.0% |
| ! | TTATTGGTCATAATCTATGA+CGG | - | chr4_3:13737466-13737485 | Msa0631110:intron | 25.0% |
| ! | TTCCACAAAACTTAAATTGA+CGG | - | chr4_3:13737523-13737542 | Msa0631110:intron | 25.0% |
| !!! | TGATTAATCTTTGTTGTTGT+CGG | - | chr4_3:13737653-13737672 | Msa0631110:intron | 25.0% |
| ! | CGACATTATTCATGATTATT+GGG | - | chr4_3:13737692-13737711 | Msa0631110:intron | 25.0% |
| ! | GACATTATTCATGATTATTG+GGG | - | chr4_3:13737693-13737712 | Msa0631110:intron | 25.0% |
| ! | AACTGTTTGAACTGAAAATT+GGG | - | chr4_3:13738030-13738049 | Msa0631110:CDS | 25.0% |
| !! | AATGAAGTAATGATGTTTTG+TGG | - | chr4_3:13738076-13738095 | Msa0631110:CDS | 25.0% |
| TCTAACCATTGATCCATAAA+AGG | + | chr4_3:13737240-13737259 | None:intergenic | 30.0% | |
| TATCATCTTGAAAGAGAACT+CGG | + | chr4_3:13737384-13737403 | None:intergenic | 30.0% | |
| !! | GATTAATCTTTGTTGTTGTC+GGG | - | chr4_3:13737654-13737673 | Msa0631110:intron | 30.0% |
| GCGACATTATTCATGATTAT+TGG | - | chr4_3:13737691-13737710 | Msa0631110:intron | 30.0% | |
| GTATGTTGTTGATCTTAAGT+CGG | - | chr4_3:13737759-13737778 | Msa0631110:intron | 30.0% | |
| ! | ATAGTCTGTTAGAGTCATTT+TGG | - | chr4_3:13737802-13737821 | Msa0631110:intron | 30.0% |
| TTACATCTTTAACTCCCTTT+AGG | + | chr4_3:13737926-13737945 | None:intergenic | 30.0% | |
| ! | TCACTTAAGTACTGTCAAAT+AGG | + | chr4_3:13738003-13738022 | None:intergenic | 30.0% |
| GAACTGTTTGAACTGAAAAT+TGG | - | chr4_3:13738029-13738048 | Msa0631110:CDS | 30.0% | |
| TCTAACCATTGATCCATAAA+AGG | + | chr4_3:13737240-13737259 | None:intergenic | 30.0% | |
| TATCATCTTGAAAGAGAACT+CGG | + | chr4_3:13737384-13737403 | None:intergenic | 30.0% | |
| !! | GATTAATCTTTGTTGTTGTC+GGG | - | chr4_3:13737654-13737673 | Msa0631110:intron | 30.0% |
| GCGACATTATTCATGATTAT+TGG | - | chr4_3:13737691-13737710 | Msa0631110:intron | 30.0% | |
| GTATGTTGTTGATCTTAAGT+CGG | - | chr4_3:13737759-13737778 | Msa0631110:intron | 30.0% | |
| ! | ATAGTCTGTTAGAGTCATTT+TGG | - | chr4_3:13737802-13737821 | Msa0631110:intron | 30.0% |
| TTACATCTTTAACTCCCTTT+AGG | + | chr4_3:13737926-13737945 | None:intergenic | 30.0% | |
| ! | TCACTTAAGTACTGTCAAAT+AGG | + | chr4_3:13738003-13738022 | None:intergenic | 30.0% |
| GAACTGTTTGAACTGAAAAT+TGG | - | chr4_3:13738029-13738048 | Msa0631110:CDS | 30.0% | |
| AGAAGGAGAATACATGATGA+AGG | - | chr4_3:13737214-13737233 | Msa0631110:CDS | 35.0% | |
| ! | TACATGATGAAGGCCTTTTA+TGG | - | chr4_3:13737224-13737243 | Msa0631110:CDS | 35.0% |
| !! | GTCCGTCAATTTAAGTTTTG+TGG | + | chr4_3:13737528-13737547 | None:intergenic | 35.0% |
| ! | TTGTCGGGTTATTATGCTTT+TGG | - | chr4_3:13737669-13737688 | Msa0631110:intron | 35.0% |
| ACATACTTAAACATCACCAC+TGG | + | chr4_3:13737745-13737764 | None:intergenic | 35.0% | |
| ACTCATTTGACATGAAAGCA+GGG | - | chr4_3:13737869-13737888 | Msa0631110:intron | 35.0% | |
| ATCCATTGGAAGTAACTTGA+AGG | - | chr4_3:13737899-13737918 | Msa0631110:intron | 35.0% | |
| AAGTAACTTGAAGGACCTAA+AGG | - | chr4_3:13737908-13737927 | Msa0631110:intron | 35.0% | |
| AGTAACTTGAAGGACCTAAA+GGG | - | chr4_3:13737909-13737928 | Msa0631110:intron | 35.0% | |
| AACTGAAAATTGGGAGCTAT+AGG | - | chr4_3:13738039-13738058 | Msa0631110:CDS | 35.0% | |
| TATTGCAAAGTGAGTCACAA+GGG | + | chr4_3:13738127-13738146 | None:intergenic | 35.0% | |
| TTATTGCAAAGTGAGTCACA+AGG | + | chr4_3:13738128-13738147 | None:intergenic | 35.0% | |
| ! | TGGTGTTTGAGTACTTTTGT+CGG | - | chr4_3:13738218-13738237 | Msa0631110:CDS | 35.0% |
| AGAAGGAGAATACATGATGA+AGG | - | chr4_3:13737214-13737233 | Msa0631110:CDS | 35.0% | |
| ! | TACATGATGAAGGCCTTTTA+TGG | - | chr4_3:13737224-13737243 | Msa0631110:CDS | 35.0% |
| !! | GTCCGTCAATTTAAGTTTTG+TGG | + | chr4_3:13737528-13737547 | None:intergenic | 35.0% |
| ! | TTGTCGGGTTATTATGCTTT+TGG | - | chr4_3:13737669-13737688 | Msa0631110:intron | 35.0% |
| ACATACTTAAACATCACCAC+TGG | + | chr4_3:13737745-13737764 | None:intergenic | 35.0% | |
| ACTCATTTGACATGAAAGCA+GGG | - | chr4_3:13737869-13737888 | Msa0631110:intron | 35.0% | |
| ATCCATTGGAAGTAACTTGA+AGG | - | chr4_3:13737899-13737918 | Msa0631110:intron | 35.0% | |
| AAGTAACTTGAAGGACCTAA+AGG | - | chr4_3:13737908-13737927 | Msa0631110:intron | 35.0% | |
| AGTAACTTGAAGGACCTAAA+GGG | - | chr4_3:13737909-13737928 | Msa0631110:intron | 35.0% | |
| AACTGAAAATTGGGAGCTAT+AGG | - | chr4_3:13738039-13738058 | Msa0631110:CDS | 35.0% | |
| TATTGCAAAGTGAGTCACAA+GGG | + | chr4_3:13738127-13738146 | None:intergenic | 35.0% | |
| TTATTGCAAAGTGAGTCACA+AGG | + | chr4_3:13738128-13738147 | None:intergenic | 35.0% | |
| ! | TGGTGTTTGAGTACTTTTGT+CGG | - | chr4_3:13738218-13738237 | Msa0631110:CDS | 35.0% |
| ! | GAAGGCCTTTTATGGATCAA+TGG | - | chr4_3:13737232-13737251 | Msa0631110:CDS | 40.0% |
| ATGGTTAGAGAAACTTGCAG+TGG | - | chr4_3:13737251-13737270 | Msa0631110:intron | 40.0% | |
| TCCAATACCAGCTATGGATA+CGG | + | chr4_3:13737315-13737334 | None:intergenic | 40.0% | |
| TCTTGAAAGAGAACTCGGAA+AGG | + | chr4_3:13737379-13737398 | None:intergenic | 40.0% | |
| CCAATAATATCAGCTCAGCT+GGG | + | chr4_3:13737453-13737472 | None:intergenic | 40.0% | |
| ACCAATAATATCAGCTCAGC+TGG | + | chr4_3:13737454-13737473 | None:intergenic | 40.0% | |
| ATCACTTTATGCGCATGACT+TGG | - | chr4_3:13737591-13737610 | Msa0631110:intron | 40.0% | |
| TCACTTTATGCGCATGACTT+GGG | - | chr4_3:13737592-13737611 | Msa0631110:intron | 40.0% | |
| !! | GTCTGTTAGAGTCATTTTGG+AGG | - | chr4_3:13737805-13737824 | Msa0631110:intron | 40.0% |
| GACTCATTTGACATGAAAGC+AGG | - | chr4_3:13737868-13737887 | Msa0631110:intron | 40.0% | |
| ! | GTCCTTCAAGTTACTTCCAA+TGG | + | chr4_3:13737904-13737923 | None:intergenic | 40.0% |
| TCGGTATTAGCTGTTCTTGT+GGG | - | chr4_3:13738237-13738256 | Msa0631110:CDS | 40.0% | |
| CTGTTCTTGTGGGAAATTGA+TGG | - | chr4_3:13738247-13738266 | Msa0631110:CDS | 40.0% | |
| ! | GAAGGCCTTTTATGGATCAA+TGG | - | chr4_3:13737232-13737251 | Msa0631110:CDS | 40.0% |
| ATGGTTAGAGAAACTTGCAG+TGG | - | chr4_3:13737251-13737270 | Msa0631110:intron | 40.0% | |
| TCCAATACCAGCTATGGATA+CGG | + | chr4_3:13737315-13737334 | None:intergenic | 40.0% | |
| TCTTGAAAGAGAACTCGGAA+AGG | + | chr4_3:13737379-13737398 | None:intergenic | 40.0% | |
| CCAATAATATCAGCTCAGCT+GGG | + | chr4_3:13737453-13737472 | None:intergenic | 40.0% | |
| ACCAATAATATCAGCTCAGC+TGG | + | chr4_3:13737454-13737473 | None:intergenic | 40.0% | |
| ATCACTTTATGCGCATGACT+TGG | - | chr4_3:13737591-13737610 | Msa0631110:intron | 40.0% | |
| TCACTTTATGCGCATGACTT+GGG | - | chr4_3:13737592-13737611 | Msa0631110:intron | 40.0% | |
| !! | GTCTGTTAGAGTCATTTTGG+AGG | - | chr4_3:13737805-13737824 | Msa0631110:intron | 40.0% |
| GACTCATTTGACATGAAAGC+AGG | - | chr4_3:13737868-13737887 | Msa0631110:intron | 40.0% | |
| ! | GTCCTTCAAGTTACTTCCAA+TGG | + | chr4_3:13737904-13737923 | None:intergenic | 40.0% |
| TCGGTATTAGCTGTTCTTGT+GGG | - | chr4_3:13738237-13738256 | Msa0631110:CDS | 40.0% | |
| CTGTTCTTGTGGGAAATTGA+TGG | - | chr4_3:13738247-13738266 | Msa0631110:CDS | 40.0% | |
| CACTAGATCCCAGCTATCAA+CGG | + | chr4_3:13737147-13737166 | None:intergenic | 45.0% | |
| ! | TTGATAGCTGGGATCTAGTG+AGG | - | chr4_3:13737147-13737166 | Msa0631110:CDS | 45.0% |
| CTAGTGAGGAAAACTTGCAG+TGG | - | chr4_3:13737161-13737180 | Msa0631110:CDS | 45.0% | |
| !! | AAACTTGCAGTGGTGCTGTT+CGG | - | chr4_3:13737171-13737190 | Msa0631110:CDS | 45.0% |
| TCCGTATCCATAGCTGGTAT+TGG | - | chr4_3:13737311-13737330 | Msa0631110:intron | 45.0% | |
| AGACTGTCCAATACCAGCTA+TGG | + | chr4_3:13737321-13737340 | None:intergenic | 45.0% | |
| ! | ATTGGACAGTCTTGTCTTCG+TGG | - | chr4_3:13737329-13737348 | Msa0631110:intron | 45.0% |
| CCCAGCTGAGCTGATATTAT+TGG | - | chr4_3:13737450-13737469 | Msa0631110:intron | 45.0% | |
| !!! | ATGCTATTTTCGTACGCCAG+TGG | - | chr4_3:13737726-13737745 | Msa0631110:intron | 45.0% |
| AGCAGGGACTCAAAATCCAT+TGG | - | chr4_3:13737885-13737904 | Msa0631110:intron | 45.0% | |
| TCATGTGTGAAAGCTGCAGT+AGG | - | chr4_3:13738189-13738208 | Msa0631110:CDS | 45.0% | |
| AAAGCTGCAGTAGGAGTGAT+TGG | - | chr4_3:13738198-13738217 | Msa0631110:CDS | 45.0% | |
| GTCGGTATTAGCTGTTCTTG+TGG | - | chr4_3:13738236-13738255 | Msa0631110:CDS | 45.0% | |
| CACTAGATCCCAGCTATCAA+CGG | + | chr4_3:13737147-13737166 | None:intergenic | 45.0% | |
| ! | TTGATAGCTGGGATCTAGTG+AGG | - | chr4_3:13737147-13737166 | Msa0631110:CDS | 45.0% |
| CTAGTGAGGAAAACTTGCAG+TGG | - | chr4_3:13737161-13737180 | Msa0631110:CDS | 45.0% | |
| !! | AAACTTGCAGTGGTGCTGTT+CGG | - | chr4_3:13737171-13737190 | Msa0631110:CDS | 45.0% |
| TCCGTATCCATAGCTGGTAT+TGG | - | chr4_3:13737311-13737330 | Msa0631110:intron | 45.0% | |
| AGACTGTCCAATACCAGCTA+TGG | + | chr4_3:13737321-13737340 | None:intergenic | 45.0% | |
| ! | ATTGGACAGTCTTGTCTTCG+TGG | - | chr4_3:13737329-13737348 | Msa0631110:intron | 45.0% |
| CCCAGCTGAGCTGATATTAT+TGG | - | chr4_3:13737450-13737469 | Msa0631110:intron | 45.0% | |
| !!! | ATGCTATTTTCGTACGCCAG+TGG | - | chr4_3:13737726-13737745 | Msa0631110:intron | 45.0% |
| AGCAGGGACTCAAAATCCAT+TGG | - | chr4_3:13737885-13737904 | Msa0631110:intron | 45.0% | |
| TCATGTGTGAAAGCTGCAGT+AGG | - | chr4_3:13738189-13738208 | Msa0631110:CDS | 45.0% | |
| AAAGCTGCAGTAGGAGTGAT+TGG | - | chr4_3:13738198-13738217 | Msa0631110:CDS | 45.0% | |
| GTCGGTATTAGCTGTTCTTG+TGG | - | chr4_3:13738236-13738255 | Msa0631110:CDS | 45.0% | |
| GCTATGGATACGGACAAGGA+GGG | + | chr4_3:13737305-13737324 | None:intergenic | 50.0% | |
| AGCTATGGATACGGACAAGG+AGG | + | chr4_3:13737306-13737325 | None:intergenic | 50.0% | |
| TCCTTGTCCGTATCCATAGC+TGG | - | chr4_3:13737305-13737324 | Msa0631110:intron | 50.0% | |
| ACCAGCTATGGATACGGACA+AGG | + | chr4_3:13737309-13737328 | None:intergenic | 50.0% | |
| AGTCACAAGGGTTGCACGAA+GGG | + | chr4_3:13738115-13738134 | None:intergenic | 50.0% | |
| TGGACGATTCAGAGCTCATG+AGG | - | chr4_3:13738162-13738181 | Msa0631110:CDS | 50.0% | |
| GCTATGGATACGGACAAGGA+GGG | + | chr4_3:13737305-13737324 | None:intergenic | 50.0% | |
| AGCTATGGATACGGACAAGG+AGG | + | chr4_3:13737306-13737325 | None:intergenic | 50.0% | |
| TCCTTGTCCGTATCCATAGC+TGG | - | chr4_3:13737305-13737324 | Msa0631110:intron | 50.0% | |
| ACCAGCTATGGATACGGACA+AGG | + | chr4_3:13737309-13737328 | None:intergenic | 50.0% | |
| AGTCACAAGGGTTGCACGAA+GGG | + | chr4_3:13738115-13738134 | None:intergenic | 50.0% | |
| TGGACGATTCAGAGCTCATG+AGG | - | chr4_3:13738162-13738181 | Msa0631110:CDS | 50.0% | |
| AGAGAAACTTGCAGTGGCGC+TGG | - | chr4_3:13737257-13737276 | Msa0631110:intron | 55.0% | |
| !! | AAACTTGCAGTGGCGCTGGT+CGG | - | chr4_3:13737261-13737280 | Msa0631110:intron | 55.0% |
| GAGTCACAAGGGTTGCACGA+AGG | + | chr4_3:13738116-13738135 | None:intergenic | 55.0% | |
| AGAGAAACTTGCAGTGGCGC+TGG | - | chr4_3:13737257-13737276 | Msa0631110:intron | 55.0% | |
| !! | AAACTTGCAGTGGCGCTGGT+CGG | - | chr4_3:13737261-13737280 | Msa0631110:intron | 55.0% |
| GAGTCACAAGGGTTGCACGA+AGG | + | chr4_3:13738116-13738135 | None:intergenic | 55.0% | |
| !! | AGTGGCGCTGGTCGGAACAA+AGG | - | chr4_3:13737269-13737288 | Msa0631110:intron | 60.0% |
| !! | AGTGGCGCTGGTCGGAACAA+AGG | - | chr4_3:13737269-13737288 | Msa0631110:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 13737137 | 13738274 | 13737137 | ID=Msa0631110;Name=Msa0631110 |
| chr4_3 | mRNA | 13737137 | 13738274 | 13737137 | ID=Msa0631110-mRNA-1;Parent=Msa0631110;Name=Msa0631110-mRNA-1;_AED=0.83;_eAED=0.83;_QI=0|0|0|0.33|0|0|3|0|139 |
| chr4_3 | exon | 13738027 | 13738274 | 13738027 | ID=Msa0631110-mRNA-1:exon:3868;Parent=Msa0631110-mRNA-1 |
| chr4_3 | exon | 13737470 | 13737521 | 13737470 | ID=Msa0631110-mRNA-1:exon:3867;Parent=Msa0631110-mRNA-1 |
| chr4_3 | exon | 13737137 | 13737256 | 13737137 | ID=Msa0631110-mRNA-1:exon:3866;Parent=Msa0631110-mRNA-1 |
| chr4_3 | CDS | 13738027 | 13738274 | 13738027 | ID=Msa0631110-mRNA-1:cds;Parent=Msa0631110-mRNA-1 |
| chr4_3 | CDS | 13737470 | 13737521 | 13737470 | ID=Msa0631110-mRNA-1:cds;Parent=Msa0631110-mRNA-1 |
| chr4_3 | CDS | 13737137 | 13737256 | 13737137 | ID=Msa0631110-mRNA-1:cds;Parent=Msa0631110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
