AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1244250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1244250 MtrunA17_Chr8g0359261 94.894 235 12 0 1 235 1 235 5.49e-158 437
Msa1244250 MtrunA17_Chr2g0314571 77.119 236 53 1 1 235 1 236 2.99e-130 367
Msa1244250 MtrunA17_Chr1g0159431 48.095 210 109 0 18 227 9 218 2.87e-65 202
Msa1244250 MtrunA17_Chr3g0125861 48.357 213 109 1 18 229 9 221 1.74e-64 200
Msa1244250 MtrunA17_Chr3g0119951 44.749 219 119 2 8 224 2 220 5.87e-55 177
Msa1244250 MtrunA17_Chr6g0450941 43.269 208 114 3 14 218 81 287 6.67e-50 165
Msa1244250 MtrunA17_Chr1g0158931 40.376 213 124 2 9 218 1 213 1.85e-49 162
Msa1244250 MtrunA17_Chr3g0119991 44.724 199 108 2 28 224 1 199 5.25e-49 160
Msa1244250 MtrunA17_Chr8g0388621 40.000 215 127 2 10 222 6 220 6.71e-49 160
Msa1244250 MtrunA17_Chr3g0126411 38.756 209 125 2 16 221 8 216 9.17e-48 158
Msa1244250 MtrunA17_Chr3g0126421 38.756 209 125 2 16 221 8 216 9.02e-47 155
Msa1244250 MtrunA17_Chr5g0428281 38.605 215 128 3 18 230 14 226 5.13e-41 141
Msa1244250 MtrunA17_Chr6g0450951 41.667 192 108 3 34 222 5 195 3.73e-40 137
Msa1244250 MtrunA17_Chr8g0386011 38.756 209 120 4 18 222 13 217 4.13e-40 138
Msa1244250 MtrunA17_Chr3g0131961 36.967 211 132 1 18 228 14 223 1.56e-39 137
Msa1244250 MtrunA17_Chr2g0295681 41.509 212 113 4 18 224 9 214 2.09e-38 134
Msa1244250 MtrunA17_Chr6g0450931 37.019 208 123 3 34 233 5 212 3.04e-38 132
Msa1244250 MtrunA17_Chr3g0131951 37.441 211 124 3 16 222 73 279 5.32e-38 135
Msa1244250 MtrunA17_Chr7g0215601 37.850 214 126 3 18 228 14 223 1.81e-37 131
Msa1244250 MtrunA17_Chr4g0059191 36.139 202 127 2 30 229 1 202 1.85e-37 130
Msa1244250 MtrunA17_Chr5g0444031 36.453 203 126 2 23 224 38 238 7.20e-36 127
Msa1244250 MtrunA17_Chr7g0214181 38.140 215 130 2 16 229 11 223 1.00e-35 127
Msa1244250 MtrunA17_Chr7g0214191 39.706 204 120 2 18 220 13 214 1.22e-35 127
Msa1244250 MtrunA17_Chr8g0386001 33.493 209 131 4 18 222 13 217 5.25e-33 120
Msa1244250 MtrunA17_Chr2g0278491 33.714 175 110 3 61 233 1 171 3.63e-26 101
Msa1244250 MtrunA17_Chr6g0450901 35.644 101 64 1 129 228 4 104 2.70e-15 69.7
Msa1244250 MtrunA17_Chr6g0450911 35.644 101 54 1 20 109 25 125 1.12e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1244250 AT3G14770.1 66.094 233 74 3 4 234 6 235 5.44e-102 296
Msa1244250 AT1G21460.1 46.919 211 112 0 18 228 9 219 1.61e-63 198
Msa1244250 AT1G21460.2 46.032 189 102 0 11 199 2 190 9.78e-53 169
Msa1244250 AT4G10850.1 40.807 223 124 4 14 229 10 231 1.28e-49 163
Msa1244250 AT5G62850.1 37.273 220 136 2 11 228 5 224 2.70e-49 162
Msa1244250 AT5G53190.1 40.191 209 122 2 18 223 10 218 1.66e-47 158
Msa1244250 AT1G66770.1 40.845 213 121 3 14 222 10 221 5.26e-47 156
Msa1244250 AT5G13170.1 38.756 209 124 2 18 224 15 221 3.56e-45 153
Msa1244250 AT5G40260.1 36.406 217 133 4 18 229 12 228 3.42e-42 143
Msa1244250 AT4G15920.1 40.284 211 120 3 18 225 9 216 5.55e-42 143
Msa1244250 AT5G23660.1 40.000 205 116 3 18 219 15 215 5.69e-42 144
Msa1244250 AT3G28007.1 39.720 214 125 4 11 221 5 217 6.38e-42 143
Msa1244250 AT3G48740.1 38.288 222 127 4 1 219 1 215 1.11e-41 144
Msa1244250 AT5G50800.1 37.838 222 129 5 18 233 13 231 1.34e-40 141
Msa1244250 AT4G25010.1 39.013 223 126 6 18 233 13 232 6.91e-40 139
Msa1244250 AT2G39060.1 37.089 213 130 3 18 228 13 223 8.58e-39 135
Msa1244250 AT5G62850.2 36.316 190 120 1 11 199 5 194 9.30e-39 134
Msa1244250 AT5G50790.1 38.318 214 127 3 18 229 13 223 3.14e-37 132
Msa1244250 AT3G16690.1 37.019 208 125 4 18 222 9 213 5.58e-37 130
Msa1244250 AT3G16690.3 36.406 217 126 5 18 231 44 251 9.27e-37 130
Msa1244250 AT5G40260.2 36.145 166 103 2 18 180 12 177 1.27e-31 115
Msa1244250 AT3G16690.2 32.624 141 89 4 18 155 9 146 6.78e-16 73.9

Find 61 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATCTCTTTCTTTCTTTA+TGG 0.078662 8_2:-31991135 Msa1244250:CDS
TTCAATAAATCTTAAGTTAA+AGG 0.095930 8_2:-31992104 Msa1244250:five_prime_UTR
GCTTACTCCATTTGTGAAAT+TGG 0.125093 8_2:-31992057 Msa1244250:CDS
TAATCATTCAAGTACGATTC+AGG 0.262538 8_2:-31988560 Msa1244250:three_prime_UTR
GTATTATTACTTGAATGATT+AGG 0.266542 8_2:+31988473 None:intergenic
TATTATTACTTGAATGATTA+GGG 0.270988 8_2:+31988474 None:intergenic
ACAATTATCCTCATTTCTTT+TGG 0.284214 8_2:+31992174 None:intergenic
TTTAGATAGGTGAGAATGTT+TGG 0.287702 8_2:-31991473 Msa1244250:intron
TGAATTGTAGACCCACATTT+AGG 0.291772 8_2:-31991791 Msa1244250:intron
AAATGGGATAGGTACTGTTT+TGG 0.311202 8_2:-31990957 Msa1244250:CDS
TTAGGTAATATCTTTGCATT+TGG 0.315752 8_2:-31991916 Msa1244250:intron
TGAATCGTACTTGAATGATT+AGG 0.337422 8_2:+31988562 None:intergenic
GTTACCACTGTTAATTCAAT+TGG 0.337932 8_2:-31991648 Msa1244250:CDS
TATATCACCTGATAATTTGT+TGG 0.346753 8_2:-31991670 Msa1244250:CDS
TTCAATAGAGAATAAATATA+TGG 0.355541 8_2:+31991726 None:intergenic
GAATCGTACTTGAATGATTA+GGG 0.363487 8_2:+31988563 None:intergenic
TTTAGGAGAATTATGAGAAA+TGG 0.365995 8_2:-31991774 Msa1244250:CDS
TGAACTGTTTGATCTGTTTG+TGG 0.376105 8_2:-31991707 Msa1244250:CDS
ATATGTTGTCTTAAGCTTAG+AGG 0.389013 8_2:-31988721 Msa1244250:three_prime_UTR
TAGGTAATATCTTTGCATTT+GGG 0.402908 8_2:-31991915 Msa1244250:CDS
GTCGAAAGCGAAAGACAAAA+TGG 0.412288 8_2:+31991168 None:intergenic
TTGATTTGTTAGGTACCAAA+TGG 0.416862 8_2:-31990974 Msa1244250:intron
AAAGATGCAGCTGGAATTGC+TGG 0.429368 8_2:-31992033 Msa1244250:intron
ATCTTTACCAATTTCACAAA+TGG 0.440430 8_2:+31992050 None:intergenic
GTGGTAACCAACAAATTATC+AGG 0.453364 8_2:+31991663 None:intergenic
TGTTTGATCTGTTTGTGGTA+TGG 0.469548 8_2:-31991702 Msa1244250:CDS
GAGAATGTTTGGATTATTGA+TGG 0.473125 8_2:-31991462 Msa1244250:CDS
CATTGTTGAGTATAGCTCAT+AGG 0.475382 8_2:-31988634 Msa1244250:three_prime_UTR
TCTATGCGCCGAATGTTAGT+TGG 0.491353 8_2:-31991383 Msa1244250:CDS
TCTCATAATTCTCCTAAATG+TGG 0.499347 8_2:+31991779 None:intergenic
AAAACAGTACCTATCCCATT+TGG 0.500505 8_2:+31990959 None:intergenic
GGATCAACAGAAATGTTCTC+AGG 0.511748 8_2:-31991753 Msa1244250:CDS
GAAAGAGATGCTCATTAAGA+AGG 0.513142 8_2:+31991146 None:intergenic
AATCATTCAAGTACGATTCA+GGG 0.513585 8_2:-31988559 Msa1244250:three_prime_UTR
TGATTTGTTAGGTACCAAAT+GGG 0.514371 8_2:-31990973 Msa1244250:intron
AAATTATCAGGTGATATAAG+AGG 0.515068 8_2:+31991675 None:intergenic
TGTATTTAATAATATCGTCC+AGG 0.515700 8_2:+31988524 None:intergenic
CTCATAATTCTCCTAAATGT+GGG 0.519009 8_2:+31991780 None:intergenic
TCAAGCATCCAACTAACATT+CGG 0.535361 8_2:+31991375 None:intergenic
TCTATGCTGACAAAGGCAAA+AGG 0.544645 8_2:-31990848 Msa1244250:intron
TATTTGTGATCATACTAGTC+GGG 0.546736 8_2:-31991427 Msa1244250:CDS
TCAGGGGTATTGTTGAAACC+TGG 0.550818 8_2:-31988542 Msa1244250:three_prime_UTR
AGTCGGGAGCTTGAAAATAA+CGG 0.564636 8_2:-31991411 Msa1244250:CDS
TTATCCATACGACACTATCA+AGG 0.565472 8_2:+31990871 None:intergenic
TGTTAGGTACCAAATGGGAT+AGG 0.566157 8_2:-31990968 Msa1244250:intron
GAAATTGGTAAAGATGCAGC+TGG 0.580425 8_2:-31992042 Msa1244250:CDS
ATTGTATCAGATAGACAATG+AGG 0.586372 8_2:+31988878 None:intergenic
GAACCCTTGATAGTGTCGTA+TGG 0.586423 8_2:-31990875 Msa1244250:CDS
ATATTTGTGATCATACTAGT+CGG 0.588397 8_2:-31991428 Msa1244250:CDS
TACAAGAGTTCATCTAGCGA+TGG 0.594097 8_2:-31990905 Msa1244250:CDS
AAATACATGATTAACTGCAA+AGG 0.596778 8_2:-31989005 Msa1244250:three_prime_UTR
ATACTACAGAAAGTGTAAGA+AGG 0.602934 8_2:-31989071 Msa1244250:three_prime_UTR
ACTATAGTACTTATGTTGCA+CGG 0.608584 8_2:+31988837 None:intergenic
TGGATAATCTATGCTGACAA+AGG 0.615539 8_2:-31990855 Msa1244250:exon
ATCATTCAAGTACGATTCAG+GGG 0.632990 8_2:-31988558 Msa1244250:three_prime_UTR
TATCCATACGACACTATCAA+GGG 0.638241 8_2:+31990872 None:intergenic
TACAATTATAAACAACGGAG+AGG 0.638342 8_2:+31991325 None:intergenic
ATAGCTCATAGGCTCACAAG+AGG 0.644810 8_2:-31988623 Msa1244250:three_prime_UTR
AAACTTACAATTATAAACAA+CGG 0.657859 8_2:+31991320 None:intergenic
TAGCTCATAGGCTCACAAGA+GGG 0.676895 8_2:-31988622 Msa1244250:three_prime_UTR
TGCTCCAATTGAATTAACAG+TGG 0.678257 8_2:+31991644 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTCATGTTTATTAATT+TGG - chr8_2:31988813-31988832 Msa1244250:three_prime_UTR 10.0%
!!! GAATATTCATATATTTTTTT+TGG + chr8_2:31991415-31991434 None:intergenic 10.0%
!! TTCAATAAATCTTAAGTTAA+AGG - chr8_2:31988532-31988551 Msa1244250:three_prime_UTR 15.0%
!! ATAAAATAACTGAAAATTAG+AGG + chr8_2:31988643-31988662 None:intergenic 15.0%
!! TTCAATAGAGAATAAATATA+TGG + chr8_2:31988913-31988932 None:intergenic 15.0%
!! TATTGTTCTAATACTATATA+TGG - chr8_2:31989077-31989096 Msa1244250:three_prime_UTR 15.0%
!! AAACTTACAATTATAAACAA+CGG + chr8_2:31989319-31989338 None:intergenic 15.0%
!!! AAATCAATACTTTATTTAGA+AGG + chr8_2:31991167-31991186 None:intergenic 15.0%
!!! GAATATTCATATATTTTTTC+TGG + chr8_2:31991192-31991211 None:intergenic 15.0%
!! TATTATTACTTGAATGATTA+GGG + chr8_2:31992165-31992184 None:intergenic 15.0%
!!! TTTCTTGCTTGTTTAATTTT+AGG - chr8_2:31988702-31988721 Msa1244250:three_prime_UTR 20.0%
!!! ATACTTTAAGAAACTTACAT+TGG + chr8_2:31988759-31988778 None:intergenic 20.0%
!!! TATTTTATACCCTTTTAGAT+AGG - chr8_2:31989150-31989169 Msa1244250:intron 20.0%
!! CTATATAATTTCTCAGAAAT+TGG - chr8_2:31989416-31989435 Msa1244250:intron 20.0%
!! AATTCAGATATTTATTCTGT+TGG - chr8_2:31989611-31989630 Msa1244250:intron 20.0%
!! TTGAACTACTTGATATATAT+CGG - chr8_2:31989922-31989941 Msa1244250:intron 20.0%
!! TTTATGAAAGGATTAAACTT+AGG - chr8_2:31990061-31990080 Msa1244250:intron 20.0%
!!! AAAAGTTCAAGATTTTTGAA+CGG + chr8_2:31990344-31990363 None:intergenic 20.0%
!!! ATAACACTGATAATGAATTT+TGG + chr8_2:31990652-31990671 None:intergenic 20.0%
!!! GTTTTTAAATCATCTCAATT+AGG + chr8_2:31990702-31990721 None:intergenic 20.0%
!! GAACATAAAAAAAGAGTAAA+AGG + chr8_2:31990761-31990780 None:intergenic 20.0%
!!! ATTTAGAAGGAAATTTTACT+TGG + chr8_2:31991154-31991173 None:intergenic 20.0%
!! TTTAAATATTCCATCAAAGT+AGG - chr8_2:31991360-31991379 Msa1244250:CDS 20.0%
!! AAATCAATACTTCATTTAGA+AGG + chr8_2:31991390-31991409 None:intergenic 20.0%
!! TATATGAATATTCTTCTATG+TGG - chr8_2:31991422-31991441 Msa1244250:CDS 20.0%
!!! ATTGTTTTGATTCAGTATTT+TGG - chr8_2:31991945-31991964 Msa1244250:intron 20.0%
!! GTATTATTACTTGAATGATT+AGG + chr8_2:31992166-31992185 None:intergenic 20.0%
!! ACAATTATCCTCATTTCTTT+TGG + chr8_2:31988465-31988484 None:intergenic 25.0%
! ATCTTTACCAATTTCACAAA+TGG + chr8_2:31988589-31988608 None:intergenic 25.0%
! TTAGGTAATATCTTTGCATT+TGG - chr8_2:31988720-31988739 Msa1244250:three_prime_UTR 25.0%
! TAGGTAATATCTTTGCATTT+GGG - chr8_2:31988721-31988740 Msa1244250:three_prime_UTR 25.0%
! TTTAGGAGAATTATGAGAAA+TGG - chr8_2:31988862-31988881 Msa1244250:three_prime_UTR 25.0%
! AAATTATCAGGTGATATAAG+AGG + chr8_2:31988964-31988983 None:intergenic 25.0%
!! TATATCACCTGATAATTTGT+TGG - chr8_2:31988966-31988985 Msa1244250:three_prime_UTR 25.0%
!!! AGAACAATAACAACCTTTTT+TGG + chr8_2:31989066-31989085 None:intergenic 25.0%
! ATATTTGTGATCATACTAGT+CGG - chr8_2:31989208-31989227 Msa1244250:intron 25.0%
! ACAAATCAAACACAAAATGA+AGG + chr8_2:31989651-31989670 None:intergenic 25.0%
!!! CATTTTGTGTTTGATTTGTT+AGG - chr8_2:31989652-31989671 Msa1244250:intron 25.0%
! AAATCATCTAACATAAACTG+TGG + chr8_2:31989854-31989873 None:intergenic 25.0%
!! TATTTTCACACAATGAATGT+TGG + chr8_2:31989891-31989910 None:intergenic 25.0%
! TGAACTACTTGATATATATC+GGG - chr8_2:31989923-31989942 Msa1244250:intron 25.0%
!!! GTCAACTTTTCATTTTTACT+AGG - chr8_2:31990024-31990043 Msa1244250:intron 25.0%
!! AGAATGAAAGCTTTTATGAA+AGG - chr8_2:31990049-31990068 Msa1244250:intron 25.0%
! TTAGTAGAGAACATTAAGAA+TGG + chr8_2:31990103-31990122 None:intergenic 25.0%
!!! TCTTAGCTTTTAATATCACA+AGG + chr8_2:31990309-31990328 None:intergenic 25.0%
! GAAAAGAATATTCACTATAC+TGG + chr8_2:31990394-31990413 None:intergenic 25.0%
! AAGATGAATGAAACCTAAAT+TGG + chr8_2:31990538-31990557 None:intergenic 25.0%
!! TAAGGAAAGAACTTTGAAAA+TGG + chr8_2:31990580-31990599 None:intergenic 25.0%
!! GTTCTTTCCTTAATTTTCTA+AGG - chr8_2:31990588-31990607 Msa1244250:intron 25.0%
! AGTACTACCTTAGAAAATTA+AGG + chr8_2:31990598-31990617 None:intergenic 25.0%
!!! ATAATGAATTTTGGCTATCT+TGG + chr8_2:31990643-31990662 None:intergenic 25.0%
!!! AAAAACACCTTTTTCATTCT+AGG - chr8_2:31990716-31990735 Msa1244250:intron 25.0%
!!! ACTCTTTTTTTATGTTCTTG+TGG - chr8_2:31990764-31990783 Msa1244250:intron 25.0%
! ATCAATTAAGCATAGCATAA+AGG + chr8_2:31991008-31991027 None:intergenic 25.0%
! TTTATGCTATGCTTAATTGA+TGG - chr8_2:31991007-31991026 Msa1244250:intron 25.0%
! TATTCATGATCACATGTAAT+AGG + chr8_2:31991047-31991066 None:intergenic 25.0%
! TTGGAAAAATACCAGTAAAA+TGG - chr8_2:31991607-31991626 Msa1244250:CDS 25.0%
!! TCATGTATTTTCCATTTTAC+TGG + chr8_2:31991621-31991640 None:intergenic 25.0%
! AAATACATGATTAACTGCAA+AGG - chr8_2:31991631-31991650 Msa1244250:CDS 25.0%
!!! ATCATATCACACTTTTTTCT+TGG + chr8_2:31991720-31991739 None:intergenic 25.0%
!!! TTTAGATCATTTTTTTGTGC+AGG + chr8_2:31991865-31991884 None:intergenic 25.0%
! TGTATTTAATAATATCGTCC+AGG + chr8_2:31992115-31992134 None:intergenic 25.0%
CTCATAATTCTCCTAAATGT+GGG + chr8_2:31988859-31988878 None:intergenic 30.0%
TCTCATAATTCTCCTAAATG+TGG + chr8_2:31988860-31988879 None:intergenic 30.0%
GTTACCACTGTTAATTCAAT+TGG - chr8_2:31988988-31989007 Msa1244250:three_prime_UTR 30.0%
ACATTCTCACCTATCTAAAA+GGG + chr8_2:31989162-31989181 None:intergenic 30.0%
AACATTCTCACCTATCTAAA+AGG + chr8_2:31989163-31989182 None:intergenic 30.0%
TTTAGATAGGTGAGAATGTT+TGG - chr8_2:31989163-31989182 Msa1244250:intron 30.0%
GAGAATGTTTGGATTATTGA+TGG - chr8_2:31989174-31989193 Msa1244250:intron 30.0%
TATTTGTGATCATACTAGTC+GGG - chr8_2:31989209-31989228 Msa1244250:intron 30.0%
TACAATTATAAACAACGGAG+AGG + chr8_2:31989314-31989333 None:intergenic 30.0%
TCAGTATAACATGGATATCT+AGG + chr8_2:31989350-31989369 None:intergenic 30.0%
TGGTAAAACTCAGTATAACA+TGG + chr8_2:31989359-31989378 None:intergenic 30.0%
AGCATCTCTTTCTTTCTTTA+TGG - chr8_2:31989501-31989520 Msa1244250:intron 30.0%
AAACAGAGAAATGAGATGAA+AGG + chr8_2:31989563-31989582 None:intergenic 30.0%
!! TTGATTTGTTAGGTACCAAA+TGG - chr8_2:31989662-31989681 Msa1244250:intron 30.0%
!! TGATTTGTTAGGTACCAAAT+GGG - chr8_2:31989663-31989682 Msa1244250:intron 30.0%
! ACTTGATATATATCGGGTTT+TGG - chr8_2:31989929-31989948 Msa1244250:intron 30.0%
!! ATTTAACTCCATTTCTAGCT+TGG - chr8_2:31989989-31990008 Msa1244250:intron 30.0%
! TTATGCCTTTTCAAAACTGT+TGG + chr8_2:31990145-31990164 None:intergenic 30.0%
! TAGCTTTTAATATCACAAGG+TGG + chr8_2:31990306-31990325 None:intergenic 30.0%
! TTTTTGAACGGTTACAATCA+TGG + chr8_2:31990332-31990351 None:intergenic 30.0%
! CCTTTTCTTAAGAAAACTGA+TGG + chr8_2:31990429-31990448 None:intergenic 30.0%
! CCATCAGTTTTCTTAAGAAA+AGG - chr8_2:31990426-31990445 Msa1244250:intron 30.0%
AAGGTAATATGTTCACTGAT+AGG - chr8_2:31990445-31990464 Msa1244250:intron 30.0%
! AGATAAAGTGAGGTATTATG+AGG - chr8_2:31990480-31990499 Msa1244250:intron 30.0%
! GAAAGAACTTTGAAAATGGT+TGG + chr8_2:31990576-31990595 None:intergenic 30.0%
TTAGGTACCAGAAAATTGAA+GGG + chr8_2:31990684-31990703 None:intergenic 30.0%
ATTAGGTACCAGAAAATTGA+AGG + chr8_2:31990685-31990704 None:intergenic 30.0%
TCTTTCCAATTCTGTATTTG+TGG - chr8_2:31990944-31990963 Msa1244250:CDS 30.0%
CTTTCCAATTCTGTATTTGT+GGG - chr8_2:31990945-31990964 Msa1244250:CDS 30.0%
ATATCCCACAAATACAGAAT+TGG + chr8_2:31990952-31990971 None:intergenic 30.0%
ATTCTGTATTTGTGGGATAT+AGG - chr8_2:31990952-31990971 Msa1244250:CDS 30.0%
! AGAAGGAAATTTTACTTGGT+TGG + chr8_2:31991150-31991169 None:intergenic 30.0%
CAACTAACATGTCATTACAT+AGG + chr8_2:31991216-31991235 None:intergenic 30.0%
! TGCTTAAAAGCTGTATTTTG+AGG - chr8_2:31991300-31991319 Msa1244250:intron 30.0%
TGAATATTCTTCTATGTGGT+TGG - chr8_2:31991426-31991445 Msa1244250:CDS 30.0%
! TGTGTTTCCATATTTTCAGA+TGG - chr8_2:31991484-31991503 Msa1244250:intron 30.0%
TTCAATGCCATCTGAAAATA+TGG + chr8_2:31991494-31991513 None:intergenic 30.0%
! ATACTACAGAAAGTGTAAGA+AGG - chr8_2:31991565-31991584 Msa1244250:intron 30.0%
ATTGTATCAGATAGACAATG+AGG + chr8_2:31991761-31991780 None:intergenic 30.0%
ACTATAGTACTTATGTTGCA+CGG + chr8_2:31991802-31991821 None:intergenic 30.0%
!!! TTTTTTTGTGCAGGAAGAAA+GGG + chr8_2:31991856-31991875 None:intergenic 30.0%
!!! ATTTTTTTGTGCAGGAAGAA+AGG + chr8_2:31991857-31991876 None:intergenic 30.0%
ATATGTTGTCTTAAGCTTAG+AGG - chr8_2:31991915-31991934 Msa1244250:CDS 30.0%
GAATCGTACTTGAATGATTA+GGG + chr8_2:31992076-31992095 None:intergenic 30.0%
TGAATCGTACTTGAATGATT+AGG + chr8_2:31992077-31992096 None:intergenic 30.0%
TAATCATTCAAGTACGATTC+AGG - chr8_2:31992076-31992095 Msa1244250:exon 30.0%
AATCATTCAAGTACGATTCA+GGG - chr8_2:31992077-31992096 Msa1244250:exon 30.0%
GCTTACTCCATTTGTGAAAT+TGG - chr8_2:31988579-31988598 Msa1244250:three_prime_UTR 35.0%
TGAATTGTAGACCCACATTT+AGG - chr8_2:31988845-31988864 Msa1244250:three_prime_UTR 35.0%
TGAACTGTTTGATCTGTTTG+TGG - chr8_2:31988929-31988948 Msa1244250:three_prime_UTR 35.0%
TGTTTGATCTGTTTGTGGTA+TGG - chr8_2:31988934-31988953 Msa1244250:three_prime_UTR 35.0%
GTGGTAACCAACAAATTATC+AGG + chr8_2:31988976-31988995 None:intergenic 35.0%
TGCTCCAATTGAATTAACAG+TGG + chr8_2:31988995-31989014 None:intergenic 35.0%
CTATGCTGAGAAACCAAAAA+AGG - chr8_2:31989050-31989069 Msa1244250:three_prime_UTR 35.0%
!! GGATTATTGATGGCAGTTTT+TGG - chr8_2:31989184-31989203 Msa1244250:intron 35.0%
TCAAGCATCCAACTAACATT+CGG + chr8_2:31989264-31989283 None:intergenic 35.0%
AAGCTTGAATTCACACAAAC+TGG + chr8_2:31989379-31989398 None:intergenic 35.0%
AGTTTGTGTGAATTCAAGCT+TGG - chr8_2:31989378-31989397 Msa1244250:intron 35.0%
GAAAGAGATGCTCATTAAGA+AGG + chr8_2:31989493-31989512 None:intergenic 35.0%
AAAACAGTACCTATCCCATT+TGG + chr8_2:31989680-31989699 None:intergenic 35.0%
!! AAATGGGATAGGTACTGTTT+TGG - chr8_2:31989679-31989698 Msa1244250:intron 35.0%
!! AATGGGATAGGTACTGTTTT+GGG - chr8_2:31989680-31989699 Msa1244250:intron 35.0%
TATCCATACGACACTATCAA+GGG + chr8_2:31989767-31989786 None:intergenic 35.0%
TTATCCATACGACACTATCA+AGG + chr8_2:31989768-31989787 None:intergenic 35.0%
TGGATAATCTATGCTGACAA+AGG - chr8_2:31989781-31989800 Msa1244250:intron 35.0%
ATATCAAGTAGTTCAACTCG+TGG + chr8_2:31989918-31989937 None:intergenic 35.0%
AAACTTAGGTACAGTGATAC+AGG - chr8_2:31990075-31990094 Msa1244250:intron 35.0%
!! AAAACTGTTGGTGACAGTTA+TGG + chr8_2:31990133-31990152 None:intergenic 35.0%
!!! TGTCACCAACAGTTTTGAAA+AGG - chr8_2:31990137-31990156 Msa1244250:intron 35.0%
ACTAAACTTTCATGCAGTAG+TGG + chr8_2:31990226-31990245 None:intergenic 35.0%
CATTAAGAGGAGATAAAGTG+AGG - chr8_2:31990470-31990489 Msa1244250:intron 35.0%
GAGTTCTGTTTAGTGGTTTA+AGG - chr8_2:31990512-31990531 Msa1244250:intron 35.0%
! TAGTGGTTTAAGGCCAATTT+AGG - chr8_2:31990522-31990541 Msa1244250:intron 35.0%
! ATTTCCACCCTTCAATTTTC+TGG - chr8_2:31990674-31990693 Msa1244250:intron 35.0%
ATCTGTGCCTAGAATGAAAA+AGG + chr8_2:31990726-31990745 None:intergenic 35.0%
CTAATCAAGACATCACACTT+TGG + chr8_2:31990876-31990895 None:intergenic 35.0%
AGGATAGTTTAATCGAGGAA+TGG + chr8_2:31990908-31990927 None:intergenic 35.0%
! CATCTAGGATAGTTTAATCG+AGG + chr8_2:31990913-31990932 None:intergenic 35.0%
CTCGATTAAACTATCCTAGA+TGG - chr8_2:31990911-31990930 Msa1244250:CDS 35.0%
AAGAGCTAAACTTTCCATCT+AGG + chr8_2:31990928-31990947 None:intergenic 35.0%
TGTATTTGTGGGATATAGGT+CGG - chr8_2:31990956-31990975 Msa1244250:CDS 35.0%
!! ATAAAGGTGTTCTCTCTGTA+AGG + chr8_2:31990992-31991011 None:intergenic 35.0%
TCAATGTCAACTGGACAATT+TGG + chr8_2:31991265-31991284 None:intergenic 35.0%
GAAGATAGTTCAATGTCAAC+TGG + chr8_2:31991274-31991293 None:intergenic 35.0%
AGAAGGAAATCCTACTTTGA+TGG + chr8_2:31991373-31991392 None:intergenic 35.0%
TATTCTTCTATGTGGTTGGT+TGG - chr8_2:31991430-31991449 Msa1244250:CDS 35.0%
! TTGTCAGTGTGATTTTGCTT+TGG - chr8_2:31991588-31991607 Msa1244250:CDS 35.0%
!!! TCACACTTTTTTCTTGGCAA+AGG + chr8_2:31991714-31991733 None:intergenic 35.0%
CATTGTTGAGTATAGCTCAT+AGG - chr8_2:31992002-31992021 Msa1244250:intron 35.0%
ATCATTCAAGTACGATTCAG+GGG - chr8_2:31992078-31992097 Msa1244250:exon 35.0%
GAAATTGGTAAAGATGCAGC+TGG - chr8_2:31988594-31988613 Msa1244250:three_prime_UTR 40.0%
GGATCAACAGAAATGTTCTC+AGG - chr8_2:31988883-31988902 Msa1244250:three_prime_UTR 40.0%
AGTCGGGAGCTTGAAAATAA+CGG - chr8_2:31989225-31989244 Msa1244250:intron 40.0%
GTCGAAAGCGAAAGACAAAA+TGG + chr8_2:31989471-31989490 None:intergenic 40.0%
TGTTAGGTACCAAATGGGAT+AGG - chr8_2:31989668-31989687 Msa1244250:intron 40.0%
TACAAGAGTTCATCTAGCGA+TGG - chr8_2:31989731-31989750 Msa1244250:intron 40.0%
TCTATGCTGACAAAGGCAAA+AGG - chr8_2:31989788-31989807 Msa1244250:intron 40.0%
ACAGAAGACCAAGCTAGAAA+TGG + chr8_2:31990000-31990019 None:intergenic 40.0%
ACATATTGCCTCTTTGTGAG+AGG - chr8_2:31990181-31990200 Msa1244250:intron 40.0%
CATATTGCCTCTTTGTGAGA+GGG - chr8_2:31990182-31990201 Msa1244250:intron 40.0%
TCACTGATAGGCTCATTAAG+AGG - chr8_2:31990457-31990476 Msa1244250:intron 40.0%
CATGAGAGAGTTCTGTTTAG+TGG - chr8_2:31990505-31990524 Msa1244250:intron 40.0%
TCGATCCCAAGTGTCAATTT+GGG + chr8_2:31990826-31990845 None:intergenic 40.0%
TTCGATCCCAAGTGTCAATT+TGG + chr8_2:31990827-31990846 None:intergenic 40.0%
GGATATAGGTCGGTATTTAG+CGG - chr8_2:31990966-31990985 Msa1244250:intron 40.0%
! AGGAAAAGCTGCAGTTTTTG+TGG - chr8_2:31991651-31991670 Msa1244250:CDS 40.0%
AAAGATGCAGCTGGAATTGC+TGG - chr8_2:31988603-31988622 Msa1244250:three_prime_UTR 45.0%
TCTATGCGCCGAATGTTAGT+TGG - chr8_2:31989253-31989272 Msa1244250:intron 45.0%
!! GAACCCTTGATAGTGTCGTA+TGG - chr8_2:31989761-31989780 Msa1244250:intron 45.0%
GGTACCAGAAAATTGAAGGG+TGG + chr8_2:31990681-31990700 None:intergenic 45.0%
AGTCCACCCAAATTGACACT+TGG - chr8_2:31990817-31990836 Msa1244250:intron 45.0%
GTCCACCCAAATTGACACTT+GGG - chr8_2:31990818-31990837 Msa1244250:intron 45.0%
ATCCCAAGTGTCAATTTGGG+TGG + chr8_2:31990823-31990842 None:intergenic 45.0%
GGATCGAACTTAAGACCTTG+AGG - chr8_2:31990839-31990858 Msa1244250:intron 45.0%
! TCTTCTATGTGGTTGGTTGG+TGG - chr8_2:31991433-31991452 Msa1244250:CDS 45.0%
ATAGCTCATAGGCTCACAAG+AGG - chr8_2:31992013-31992032 Msa1244250:intron 45.0%
TAGCTCATAGGCTCACAAGA+GGG - chr8_2:31992014-31992033 Msa1244250:intron 45.0%
!! TCAGGGGTATTGTTGAAACC+TGG - chr8_2:31992094-31992113 Msa1244250:exon 45.0%
TTGCCTCTTTGTGAGAGGGA+CGG - chr8_2:31990186-31990205 Msa1244250:intron 50.0%
TTACCGTCCCTCTCACAAAG+AGG + chr8_2:31990192-31990211 None:intergenic 50.0%
TTGGAGTGTGCTTCTCCTCA+AGG + chr8_2:31990857-31990876 None:intergenic 50.0%
!! GTTGGTTGGTGGCATGTTAG+TGG - chr8_2:31991444-31991463 Msa1244250:CDS 50.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 31988456 31992202 31988456 ID=Msa1244250;Name=Msa1244250
chr8_2 mRNA 31988456 31992202 31988456 ID=Msa1244250-mRNA-1;Parent=Msa1244250;Name=Msa1244250-mRNA-1;_AED=0.09;_eAED=0.09;_QI=108|1|1|1|0.83|0.71|7|722|235
chr8_2 exon 31988456 31989155 31988456 ID=Msa1244250-mRNA-1:exon:10544;Parent=Msa1244250-mRNA-1
chr8_2 exon 31990849 31990984 31990849 ID=Msa1244250-mRNA-1:exon:10543;Parent=Msa1244250-mRNA-1
chr8_2 exon 31991107 31991226 31991107 ID=Msa1244250-mRNA-1:exon:10542;Parent=Msa1244250-mRNA-1
chr8_2 exon 31991328 31991486 31991328 ID=Msa1244250-mRNA-1:exon:10541;Parent=Msa1244250-mRNA-1
chr8_2 exon 31991587 31991803 31991587 ID=Msa1244250-mRNA-1:exon:10540;Parent=Msa1244250-mRNA-1
chr8_2 exon 31991898 31991934 31991898 ID=Msa1244250-mRNA-1:exon:10539;Parent=Msa1244250-mRNA-1
chr8_2 exon 31992034 31992202 31992034 ID=Msa1244250-mRNA-1:exon:10538;Parent=Msa1244250-mRNA-1
chr8_2 five_prime_UTR 31992095 31992202 31992095 ID=Msa1244250-mRNA-1:five_prime_utr;Parent=Msa1244250-mRNA-1
chr8_2 CDS 31992034 31992094 31992034 ID=Msa1244250-mRNA-1:cds;Parent=Msa1244250-mRNA-1
chr8_2 CDS 31991898 31991934 31991898 ID=Msa1244250-mRNA-1:cds;Parent=Msa1244250-mRNA-1
chr8_2 CDS 31991587 31991803 31991587 ID=Msa1244250-mRNA-1:cds;Parent=Msa1244250-mRNA-1
chr8_2 CDS 31991328 31991486 31991328 ID=Msa1244250-mRNA-1:cds;Parent=Msa1244250-mRNA-1
chr8_2 CDS 31991107 31991226 31991107 ID=Msa1244250-mRNA-1:cds;Parent=Msa1244250-mRNA-1
chr8_2 CDS 31990871 31990984 31990871 ID=Msa1244250-mRNA-1:cds;Parent=Msa1244250-mRNA-1
chr8_2 three_prime_UTR 31990849 31990870 31990849 ID=Msa1244250-mRNA-1:three_prime_utr;Parent=Msa1244250-mRNA-1
chr8_2 three_prime_UTR 31988456 31989155 31988456 ID=Msa1244250-mRNA-1:three_prime_utr;Parent=Msa1244250-mRNA-1
Gene Sequence

>Msa1244250

ATGTCTCTGTTTAATGCTTACTCCATTTGTGAAATTGGTAAAGATGCAGCTGGAATTGCTGGTAATATCTTTGCATTTGGGTTATTTCTATCTCCAATACCCACATTTAGGAGAATTATGAGAAATGGATCAACAGAAATGTTCTCAGGATTGCCATATATTTATTCTCTATTGAACTGTTTGATCTGTTTGTGGTATGGTACTCCTCTTATATCACCTGATAATTTGTTGGTTACCACTGTTAATTCAATTGGAGCAGCTTTTCAGCTTGTGTACATTTTCTTATTCTTAATCTATGCTGAGAAACCAAAAAAGGTGAGAATGTTTGGATTATTGATGGCAGTTTTTGGTATATTTGTGATCATACTAGTCGGGAGCTTGAAAATAACGGATAGTTCTATGCGCCGAATGTTAGTTGGATGCTTGAGTTGTGCTTCTCTCATTTCAATGTTTGCCTCTCCGTTGTTTATAATTAAATTGGTCATTCGCACAAAGAGTGTTGAGTTTATGCCATTTTGTCTTTCGCTTTCGACCTTCTTAATGAGCATCTCTTTCTTTCTTTATGGATTACTCAGTGACGATGTCTTCATTTATGTACCAAATGGGATAGGTACTGTTTTGGGAATGATACAGTTGATTTTATACTTCTATTACAAGAGTTCATCTAGCGATGGCTCTACAGAACCCTTGATAGTGTCGTATGGATAA

Protein sequence

>Msa1244250

MSLFNAYSICEIGKDAAGIAGNIFAFGLFLSPIPTFRRIMRNGSTEMFSGLPYIYSLLNCLICLWYGTPLISPDNLLVTTVNSIGAAFQLVYIFLFLIYAEKPKKVRMFGLLMAVFGIFVIILVGSLKITDSSMRRMLVGCLSCASLISMFASPLFIIKLVIRTKSVEFMPFCLSLSTFLMSISFFLYGLLSDDVFIYVPNGIGTVLGMIQLILYFYYKSSSSDGSTEPLIVSYG*