Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631280 | XP_013454925.1 | 92.949 | 156 | 10 | 1 | 1 | 155 | 1 | 156 | 2.01e-96 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631280 | A0A072UIR5 | 92.949 | 156 | 10 | 1 | 1 | 155 | 1 | 156 | 9.60e-97 | 285 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0631280 | Msa0669550 | 0.881104 | 3.165558e-70 | -8.615850e-47 |
| Msa0631280 | Msa0905260 | 0.813747 | 2.188491e-51 | -8.615850e-47 |
| Msa0631280 | Msa0974530 | 0.817720 | 2.849244e-52 | -8.615850e-47 |
| Msa0534790 | Msa0631280 | 0.902638 | 7.898752e-79 | -8.615850e-47 |
| Msa0590970 | Msa0631280 | 0.871997 | 4.459882e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631280 | MtrunA17_Chr4g0008731 | 92.949 | 156 | 10 | 1 | 1 | 155 | 1 | 156 | 1.85e-100 | 285 |
| Msa0631280 | MtrunA17_Chr7g0240431 | 53.623 | 138 | 62 | 2 | 18 | 155 | 21 | 156 | 1.18e-46 | 149 |
| Msa0631280 | MtrunA17_Chr4g0008721 | 50.000 | 158 | 69 | 5 | 1 | 155 | 1 | 151 | 2.08e-38 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631280 | AT5G02020.1 | 50.360 | 139 | 58 | 4 | 17 | 155 | 22 | 149 | 4.05e-32 | 112 |
| Msa0631280 | AT5G02020.2 | 49.153 | 118 | 51 | 4 | 17 | 133 | 22 | 131 | 1.82e-20 | 82.4 |
| Msa0631280 | AT2G39855.2 | 32.374 | 139 | 76 | 3 | 18 | 155 | 21 | 142 | 9.70e-14 | 65.1 |
| Msa0631280 | AT2G39855.4 | 32.374 | 139 | 76 | 3 | 18 | 155 | 21 | 142 | 9.70e-14 | 65.1 |
| Msa0631280 | AT5G59080.2 | 32.414 | 145 | 65 | 3 | 16 | 155 | 19 | 135 | 6.60e-13 | 62.8 |
| Msa0631280 | AT5G59080.1 | 32.414 | 145 | 65 | 3 | 16 | 155 | 19 | 135 | 6.60e-13 | 62.8 |
| Msa0631280 | AT3G55646.1 | 30.952 | 126 | 69 | 2 | 30 | 155 | 39 | 146 | 3.52e-11 | 58.5 |
| Msa0631280 | AT3G46880.2 | 37.647 | 85 | 52 | 1 | 72 | 155 | 32 | 116 | 5.89e-11 | 57.0 |
| Msa0631280 | AT2G39855.3 | 46.032 | 63 | 28 | 2 | 94 | 155 | 60 | 117 | 7.43e-11 | 57.0 |
Find 32 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCTTCTGGAATTTA+TGG | 0.132630 | 4_3:+14069418 | Msa0631280:CDS |
| CACTCATCATCTTCTTCTTC+TGG | 0.222052 | 4_3:+14069409 | Msa0631280:CDS |
| TCACCTTGTTCTGAGCTCTT+TGG | 0.224503 | 4_3:+14069373 | Msa0631280:CDS |
| CACCTTGTTCTGAGCTCTTT+GGG | 0.234708 | 4_3:+14069374 | Msa0631280:CDS |
| CTTAGTTCATCAATCTATTA+TGG | 0.252777 | 4_3:+14070515 | Msa0631280:CDS |
| GTCCCCTCTTGTAGCCATTT+GGG | 0.335741 | 4_3:-14070884 | None:intergenic |
| AGTCCCCTCTTGTAGCCATT+TGG | 0.351874 | 4_3:-14070885 | None:intergenic |
| TACAAGAGGGGACTGGTGGC+AGG | 0.416058 | 4_3:+14070894 | Msa0631280:CDS |
| AGTACCTTGAGTAACAGTTT+TGG | 0.440213 | 4_3:-14069986 | None:intergenic |
| TGGGAATCATCTTCTCCTCC+AGG | 0.441567 | 4_3:-14070865 | None:intergenic |
| AACTTATAGCACAAGAATCC+TGG | 0.444574 | 4_3:+14070847 | Msa0631280:intron |
| TAATTGTTGTTGCAGGTACA+TGG | 0.466921 | 4_3:+14071224 | Msa0631280:intron |
| GAGGTTGAGGATATATGTCT+TGG | 0.479701 | 4_3:-14070541 | None:intergenic |
| CATAATAGATTGATGAACTA+AGG | 0.485902 | 4_3:-14070514 | None:intergenic |
| TTCAAAGGAGAAAGAATGGA+AGG | 0.549494 | 4_3:+14069322 | None:intergenic |
| AGGAGAAGATGATTCCCAAA+TGG | 0.568509 | 4_3:+14070870 | Msa0631280:CDS |
| ACAAGAGGGGACTGGTGGCA+GGG | 0.569843 | 4_3:+14070895 | Msa0631280:CDS |
| TTATAGTCAATCTAGTTACA+TGG | 0.576174 | 4_3:+14071249 | Msa0631280:CDS |
| GTTACATGGATGAACTAAAG+AGG | 0.581768 | 4_3:+14071263 | Msa0631280:CDS |
| GATAGCATCTTTAAAGACAA+TGG | 0.591645 | 4_3:+14070419 | Msa0631280:intron |
| AGTTCATCAATCTATTATGG+TGG | 0.597056 | 4_3:+14070518 | Msa0631280:CDS |
| AACACCAAAACTGTTACTCA+AGG | 0.603702 | 4_3:+14069982 | Msa0631280:CDS |
| AAATGGCTACAAGAGGGGAC+TGG | 0.623507 | 4_3:+14070887 | Msa0631280:CDS |
| TGGCTACAAGAGGGGACTGG+TGG | 0.631380 | 4_3:+14070890 | Msa0631280:CDS |
| GATTCCCAAATGGCTACAAG+AGG | 0.636659 | 4_3:+14070880 | Msa0631280:CDS |
| ATTCCCAAATGGCTACAAGA+GGG | 0.639337 | 4_3:+14070881 | Msa0631280:CDS |
| TTCCCAAATGGCTACAAGAG+GGG | 0.646219 | 4_3:+14070882 | Msa0631280:CDS |
| GACCCAAAGAGCTCAGAACA+AGG | 0.656538 | 4_3:-14069376 | None:intergenic |
| AGCATCTTTAAAGACAATGG+TGG | 0.682264 | 4_3:+14070422 | Msa0631280:CDS |
| ATTGATGAACTAAGGTGACA+TGG | 0.710947 | 4_3:-14070506 | None:intergenic |
| TTATAGCACAAGAATCCTGG+AGG | 0.713575 | 4_3:+14070850 | Msa0631280:intron |
| TCTGTGCGATCTGAAGTGAG+TGG | 0.794018 | 4_3:+14069937 | Msa0631280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATATTAAAATATAATA+TGG | + | chr4_3:14070055-14070074 | Msa0631280:intron | 0.0% |
| !! | TAATATATTAAAATATAATA+TGG | + | chr4_3:14070055-14070074 | Msa0631280:intron | 0.0% |
| !!! | TTTTTTTTTATGTGTTTTTT+TGG | + | chr4_3:14070032-14070051 | Msa0631280:intron | 10.0% |
| !!! | AATTAAAGAATTTTTTCTAT+AGG | - | chr4_3:14070329-14070348 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTATGTGTTTTTT+TGG | + | chr4_3:14070032-14070051 | Msa0631280:intron | 10.0% |
| !!! | AATTAAAGAATTTTTTCTAT+AGG | - | chr4_3:14070329-14070348 | None:intergenic | 10.0% |
| !! | AAAATGAAGATATTATATGA+AGG | - | chr4_3:14069487-14069506 | None:intergenic | 15.0% |
| !! | CTTAACCAATTATATTTAAT+GGG | - | chr4_3:14070200-14070219 | None:intergenic | 15.0% |
| !!! | TATTTTTTTATATACTACTC+TGG | + | chr4_3:14070648-14070667 | Msa0631280:intron | 15.0% |
| !! | TCAAATAAAATTGATGTATA+TGG | + | chr4_3:14070695-14070714 | Msa0631280:intron | 15.0% |
| !! | ACAAAAAAAAAAAAACAAAG+TGG | - | chr4_3:14070744-14070763 | None:intergenic | 15.0% |
| !! | AAAATGAAGATATTATATGA+AGG | - | chr4_3:14069487-14069506 | None:intergenic | 15.0% |
| !! | CTTAACCAATTATATTTAAT+GGG | - | chr4_3:14070200-14070219 | None:intergenic | 15.0% |
| !!! | TATTTTTTTATATACTACTC+TGG | + | chr4_3:14070648-14070667 | Msa0631280:intron | 15.0% |
| !! | TCAAATAAAATTGATGTATA+TGG | + | chr4_3:14070695-14070714 | Msa0631280:intron | 15.0% |
| !! | ACAAAAAAAAAAAAACAAAG+TGG | - | chr4_3:14070744-14070763 | None:intergenic | 15.0% |
| !! | TAAAAACAAAACCATGAAAT+GGG | - | chr4_3:14069538-14069557 | None:intergenic | 20.0% |
| !! | ATAAAAACAAAACCATGAAA+TGG | - | chr4_3:14069539-14069558 | None:intergenic | 20.0% |
| !!! | ATTTGTTACATGATACAAAA+TGG | - | chr4_3:14069842-14069861 | None:intergenic | 20.0% |
| !! | CAATTCAAGAAAATGAAAAA+AGG | - | chr4_3:14069891-14069910 | None:intergenic | 20.0% |
| !! | CACATAAAAAAAAAAAACAG+AGG | - | chr4_3:14070026-14070045 | None:intergenic | 20.0% |
| !! | TTTGACCCATTAAATATAAT+TGG | + | chr4_3:14070192-14070211 | Msa0631280:intron | 20.0% |
| !! | GCTTAACCAATTATATTTAA+TGG | - | chr4_3:14070201-14070220 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTACACTCACTT+TGG | - | chr4_3:14070594-14070613 | None:intergenic | 20.0% |
| !! | AAAAACAAAGTGGATATATT+TGG | - | chr4_3:14070734-14070753 | None:intergenic | 20.0% |
| !! | TAAAAACAAAACCATGAAAT+GGG | - | chr4_3:14069538-14069557 | None:intergenic | 20.0% |
| !! | ATAAAAACAAAACCATGAAA+TGG | - | chr4_3:14069539-14069558 | None:intergenic | 20.0% |
| !!! | ATTTGTTACATGATACAAAA+TGG | - | chr4_3:14069842-14069861 | None:intergenic | 20.0% |
| !! | CAATTCAAGAAAATGAAAAA+AGG | - | chr4_3:14069891-14069910 | None:intergenic | 20.0% |
| !! | CACATAAAAAAAAAAAACAG+AGG | - | chr4_3:14070026-14070045 | None:intergenic | 20.0% |
| !! | TTTGACCCATTAAATATAAT+TGG | + | chr4_3:14070192-14070211 | Msa0631280:intron | 20.0% |
| !! | GCTTAACCAATTATATTTAA+TGG | - | chr4_3:14070201-14070220 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTACACTCACTT+TGG | - | chr4_3:14070594-14070613 | None:intergenic | 20.0% |
| !! | AAAAACAAAGTGGATATATT+TGG | - | chr4_3:14070734-14070753 | None:intergenic | 20.0% |
| ! | GAAGGAAAAAATAAGCAAAA+GGG | + | chr4_3:14069340-14069359 | Msa0631280:CDS | 25.0% |
| ! | AAAAACAAAACCATGAAATG+GGG | - | chr4_3:14069537-14069556 | None:intergenic | 25.0% |
| ! | TAAATTCAATAACCAGATGA+AGG | - | chr4_3:14069792-14069811 | None:intergenic | 25.0% |
| ! | TGTAACAAATTCATTGAACA+TGG | + | chr4_3:14069852-14069871 | Msa0631280:intron | 25.0% |
| !!! | ATTGTGTTGATTCAGATTTT+AGG | + | chr4_3:14069907-14069926 | Msa0631280:intron | 25.0% |
| !!! | TTGTGTTGATTCAGATTTTA+GGG | + | chr4_3:14069908-14069927 | Msa0631280:intron | 25.0% |
| !! | AGTAACAGCATATTTCATTT+TGG | + | chr4_3:14070087-14070106 | Msa0631280:intron | 25.0% |
| ! | TGTACATAATGTTCCATATA+TGG | - | chr4_3:14070228-14070247 | None:intergenic | 25.0% |
| !!! | ATTGTTTTACCTAAATCTCT+AGG | + | chr4_3:14070280-14070299 | Msa0631280:intron | 25.0% |
| ! | TCTGTATTTACATGAGAAAA+AGG | - | chr4_3:14070401-14070420 | None:intergenic | 25.0% |
| !! | TGATATGAGTTTTCTCTATA+AGG | + | chr4_3:14070469-14070488 | Msa0631280:CDS | 25.0% |
| !! | GATATGAGTTTTCTCTATAA+GGG | + | chr4_3:14070470-14070489 | Msa0631280:CDS | 25.0% |
| ! | CATAATAGATTGATGAACTA+AGG | - | chr4_3:14070517-14070536 | None:intergenic | 25.0% |
| ! | CTTAGTTCATCAATCTATTA+TGG | + | chr4_3:14070515-14070534 | Msa0631280:CDS | 25.0% |
| ! | TGTAAATATAATACTCCTTC+TGG | - | chr4_3:14070779-14070798 | None:intergenic | 25.0% |
| !!! | GAAGGAGTATTATATTTACA+TGG | + | chr4_3:14070779-14070798 | Msa0631280:intron | 25.0% |
| !! | CTTGTCTAATTAGATTTTTG+TGG | + | chr4_3:14070941-14070960 | Msa0631280:intron | 25.0% |
| ! | ATATTATGAAACCTATATCC+AGG | + | chr4_3:14071097-14071116 | Msa0631280:intron | 25.0% |
| !! | ATTACTTTAATTGTTGTTGC+AGG | + | chr4_3:14071217-14071236 | Msa0631280:intron | 25.0% |
| ! | TTATAGTCAATCTAGTTACA+TGG | + | chr4_3:14071249-14071268 | Msa0631280:CDS | 25.0% |
| ! | GAAGGAAAAAATAAGCAAAA+GGG | + | chr4_3:14069340-14069359 | Msa0631280:CDS | 25.0% |
| ! | AAAAACAAAACCATGAAATG+GGG | - | chr4_3:14069537-14069556 | None:intergenic | 25.0% |
| ! | TAAATTCAATAACCAGATGA+AGG | - | chr4_3:14069792-14069811 | None:intergenic | 25.0% |
| ! | TGTAACAAATTCATTGAACA+TGG | + | chr4_3:14069852-14069871 | Msa0631280:intron | 25.0% |
| !!! | ATTGTGTTGATTCAGATTTT+AGG | + | chr4_3:14069907-14069926 | Msa0631280:intron | 25.0% |
| !!! | TTGTGTTGATTCAGATTTTA+GGG | + | chr4_3:14069908-14069927 | Msa0631280:intron | 25.0% |
| !! | AGTAACAGCATATTTCATTT+TGG | + | chr4_3:14070087-14070106 | Msa0631280:intron | 25.0% |
| ! | TGTACATAATGTTCCATATA+TGG | - | chr4_3:14070228-14070247 | None:intergenic | 25.0% |
| !!! | ATTGTTTTACCTAAATCTCT+AGG | + | chr4_3:14070280-14070299 | Msa0631280:intron | 25.0% |
| ! | TCTGTATTTACATGAGAAAA+AGG | - | chr4_3:14070401-14070420 | None:intergenic | 25.0% |
| !! | TGATATGAGTTTTCTCTATA+AGG | + | chr4_3:14070469-14070488 | Msa0631280:CDS | 25.0% |
| !! | GATATGAGTTTTCTCTATAA+GGG | + | chr4_3:14070470-14070489 | Msa0631280:CDS | 25.0% |
| ! | CATAATAGATTGATGAACTA+AGG | - | chr4_3:14070517-14070536 | None:intergenic | 25.0% |
| ! | CTTAGTTCATCAATCTATTA+TGG | + | chr4_3:14070515-14070534 | Msa0631280:CDS | 25.0% |
| ! | TGTAAATATAATACTCCTTC+TGG | - | chr4_3:14070779-14070798 | None:intergenic | 25.0% |
| !!! | GAAGGAGTATTATATTTACA+TGG | + | chr4_3:14070779-14070798 | Msa0631280:intron | 25.0% |
| !! | CTTGTCTAATTAGATTTTTG+TGG | + | chr4_3:14070941-14070960 | Msa0631280:intron | 25.0% |
| ! | ATATTATGAAACCTATATCC+AGG | + | chr4_3:14071097-14071116 | Msa0631280:intron | 25.0% |
| !! | ATTACTTTAATTGTTGTTGC+AGG | + | chr4_3:14071217-14071236 | Msa0631280:intron | 25.0% |
| ! | TTATAGTCAATCTAGTTACA+TGG | + | chr4_3:14071249-14071268 | Msa0631280:CDS | 25.0% |
| GGAAGGAAAAAATAAGCAAA+AGG | + | chr4_3:14069339-14069358 | Msa0631280:CDS | 30.0% | |
| !! | TCTTCTTCTTCTGGAATTTA+TGG | + | chr4_3:14069418-14069437 | Msa0631280:CDS | 30.0% |
| AGGTGATTGAGTAGAAAAAA+TGG | - | chr4_3:14069446-14069465 | None:intergenic | 30.0% | |
| ! | TTTTTCTACTCAATCACCTA+AGG | + | chr4_3:14069447-14069466 | Msa0631280:CDS | 30.0% |
| !! | GGAAAAAGCATTATTACCTT+AGG | - | chr4_3:14069466-14069485 | None:intergenic | 30.0% |
| ! | TTTTATTCAACCCCATTTCA+TGG | + | chr4_3:14069524-14069543 | Msa0631280:intron | 30.0% |
| ATAACCAGATGAAGGAAATA+AGG | - | chr4_3:14069784-14069803 | None:intergenic | 30.0% | |
| ! | TGGTTAAGCTTTTCCATATA+TGG | + | chr4_3:14070212-14070231 | Msa0631280:intron | 30.0% |
| TACATTGTACCTAGAGATTT+AGG | - | chr4_3:14070292-14070311 | None:intergenic | 30.0% | |
| ! | GATAGCATCTTTAAAGACAA+TGG | + | chr4_3:14070419-14070438 | Msa0631280:intron | 30.0% |
| AGTTCATCAATCTATTATGG+TGG | + | chr4_3:14070518-14070537 | Msa0631280:CDS | 30.0% | |
| TGTTTATATTTGACACCAGA+AGG | + | chr4_3:14070761-14070780 | Msa0631280:intron | 30.0% | |
| GGAAGGAAAAAATAAGCAAA+AGG | + | chr4_3:14069339-14069358 | Msa0631280:CDS | 30.0% | |
| !! | TCTTCTTCTTCTGGAATTTA+TGG | + | chr4_3:14069418-14069437 | Msa0631280:CDS | 30.0% |
| AGGTGATTGAGTAGAAAAAA+TGG | - | chr4_3:14069446-14069465 | None:intergenic | 30.0% | |
| ! | TTTTTCTACTCAATCACCTA+AGG | + | chr4_3:14069447-14069466 | Msa0631280:CDS | 30.0% |
| !! | GGAAAAAGCATTATTACCTT+AGG | - | chr4_3:14069466-14069485 | None:intergenic | 30.0% |
| ! | TTTTATTCAACCCCATTTCA+TGG | + | chr4_3:14069524-14069543 | Msa0631280:intron | 30.0% |
| ATAACCAGATGAAGGAAATA+AGG | - | chr4_3:14069784-14069803 | None:intergenic | 30.0% | |
| ! | TGGTTAAGCTTTTCCATATA+TGG | + | chr4_3:14070212-14070231 | Msa0631280:intron | 30.0% |
| TACATTGTACCTAGAGATTT+AGG | - | chr4_3:14070292-14070311 | None:intergenic | 30.0% | |
| ! | GATAGCATCTTTAAAGACAA+TGG | + | chr4_3:14070419-14070438 | Msa0631280:intron | 30.0% |
| AGTTCATCAATCTATTATGG+TGG | + | chr4_3:14070518-14070537 | Msa0631280:CDS | 30.0% | |
| TGTTTATATTTGACACCAGA+AGG | + | chr4_3:14070761-14070780 | Msa0631280:intron | 30.0% | |
| ! | ACGTGTTAGTTTCGTGTAAA+TGG | + | chr4_3:14069734-14069753 | Msa0631280:intron | 35.0% |
| ! | TCAACCTTATTTCCTTCATC+TGG | + | chr4_3:14069777-14069796 | Msa0631280:intron | 35.0% |
| AACACCAAAACTGTTACTCA+AGG | + | chr4_3:14069982-14070001 | Msa0631280:CDS | 35.0% | |
| ! | AGTACCTTGAGTAACAGTTT+TGG | - | chr4_3:14069989-14070008 | None:intergenic | 35.0% |
| ! | AGCATCTTTAAAGACAATGG+TGG | + | chr4_3:14070422-14070441 | Msa0631280:CDS | 35.0% |
| ATTGATGAACTAAGGTGACA+TGG | - | chr4_3:14070509-14070528 | None:intergenic | 35.0% | |
| !!! | TTTTGAGTACTTTGAGGTTG+AGG | - | chr4_3:14070557-14070576 | None:intergenic | 35.0% |
| AACTTATAGCACAAGAATCC+TGG | + | chr4_3:14070847-14070866 | Msa0631280:intron | 35.0% | |
| !! | CTTGTTATCTTTTGATCCAC+AGG | + | chr4_3:14071012-14071031 | Msa0631280:intron | 35.0% |
| TCAATAATAGAGACTTCCTG+TGG | - | chr4_3:14071031-14071050 | None:intergenic | 35.0% | |
| AAATCATCCTTGTCAACTCT+AGG | + | chr4_3:14071050-14071069 | Msa0631280:intron | 35.0% | |
| TATATGTGTCACCTGGATAT+AGG | - | chr4_3:14071111-14071130 | None:intergenic | 35.0% | |
| CATGAAATATATGTGTCACC+TGG | - | chr4_3:14071118-14071137 | None:intergenic | 35.0% | |
| ! | TAATTGTTGTTGCAGGTACA+TGG | + | chr4_3:14071224-14071243 | Msa0631280:intron | 35.0% |
| GTTACATGGATGAACTAAAG+AGG | + | chr4_3:14071263-14071282 | Msa0631280:CDS | 35.0% | |
| ! | ACGTGTTAGTTTCGTGTAAA+TGG | + | chr4_3:14069734-14069753 | Msa0631280:intron | 35.0% |
| ! | TCAACCTTATTTCCTTCATC+TGG | + | chr4_3:14069777-14069796 | Msa0631280:intron | 35.0% |
| AACACCAAAACTGTTACTCA+AGG | + | chr4_3:14069982-14070001 | Msa0631280:CDS | 35.0% | |
| ! | AGTACCTTGAGTAACAGTTT+TGG | - | chr4_3:14069989-14070008 | None:intergenic | 35.0% |
| ! | AGCATCTTTAAAGACAATGG+TGG | + | chr4_3:14070422-14070441 | Msa0631280:CDS | 35.0% |
| ATTGATGAACTAAGGTGACA+TGG | - | chr4_3:14070509-14070528 | None:intergenic | 35.0% | |
| !!! | TTTTGAGTACTTTGAGGTTG+AGG | - | chr4_3:14070557-14070576 | None:intergenic | 35.0% |
| AACTTATAGCACAAGAATCC+TGG | + | chr4_3:14070847-14070866 | Msa0631280:intron | 35.0% | |
| !! | CTTGTTATCTTTTGATCCAC+AGG | + | chr4_3:14071012-14071031 | Msa0631280:intron | 35.0% |
| TCAATAATAGAGACTTCCTG+TGG | - | chr4_3:14071031-14071050 | None:intergenic | 35.0% | |
| AAATCATCCTTGTCAACTCT+AGG | + | chr4_3:14071050-14071069 | Msa0631280:intron | 35.0% | |
| TATATGTGTCACCTGGATAT+AGG | - | chr4_3:14071111-14071130 | None:intergenic | 35.0% | |
| CATGAAATATATGTGTCACC+TGG | - | chr4_3:14071118-14071137 | None:intergenic | 35.0% | |
| ! | TAATTGTTGTTGCAGGTACA+TGG | + | chr4_3:14071224-14071243 | Msa0631280:intron | 35.0% |
| GTTACATGGATGAACTAAAG+AGG | + | chr4_3:14071263-14071282 | Msa0631280:CDS | 35.0% | |
| CACTCATCATCTTCTTCTTC+TGG | + | chr4_3:14069409-14069428 | Msa0631280:CDS | 40.0% | |
| ! | CTTTTGGACATGAATGTTGG+TGG | - | chr4_3:14069636-14069655 | None:intergenic | 40.0% |
| !! | TCGCTTTTGGACATGAATGT+TGG | - | chr4_3:14069639-14069658 | None:intergenic | 40.0% |
| ! | TTAGACAGCAAACTCGCTTT+TGG | - | chr4_3:14069652-14069671 | None:intergenic | 40.0% |
| !! | GTTTGCTGTCTAACATGTGT+CGG | + | chr4_3:14069659-14069678 | Msa0631280:intron | 40.0% |
| GAGGTTGAGGATATATGTCT+TGG | - | chr4_3:14070544-14070563 | None:intergenic | 40.0% | |
| !! | GCAGCATTTTGAGTACTTTG+AGG | - | chr4_3:14070563-14070582 | None:intergenic | 40.0% |
| TTATAGCACAAGAATCCTGG+AGG | + | chr4_3:14070850-14070869 | Msa0631280:intron | 40.0% | |
| AGGAGAAGATGATTCCCAAA+TGG | + | chr4_3:14070870-14070889 | Msa0631280:CDS | 40.0% | |
| ATTCCCAAATGGCTACAAGA+GGG | + | chr4_3:14070881-14070900 | Msa0631280:CDS | 40.0% | |
| CACTCATCATCTTCTTCTTC+TGG | + | chr4_3:14069409-14069428 | Msa0631280:CDS | 40.0% | |
| ! | CTTTTGGACATGAATGTTGG+TGG | - | chr4_3:14069636-14069655 | None:intergenic | 40.0% |
| !! | TCGCTTTTGGACATGAATGT+TGG | - | chr4_3:14069639-14069658 | None:intergenic | 40.0% |
| ! | TTAGACAGCAAACTCGCTTT+TGG | - | chr4_3:14069652-14069671 | None:intergenic | 40.0% |
| !! | GTTTGCTGTCTAACATGTGT+CGG | + | chr4_3:14069659-14069678 | Msa0631280:intron | 40.0% |
| GAGGTTGAGGATATATGTCT+TGG | - | chr4_3:14070544-14070563 | None:intergenic | 40.0% | |
| !! | GCAGCATTTTGAGTACTTTG+AGG | - | chr4_3:14070563-14070582 | None:intergenic | 40.0% |
| TTATAGCACAAGAATCCTGG+AGG | + | chr4_3:14070850-14070869 | Msa0631280:intron | 40.0% | |
| AGGAGAAGATGATTCCCAAA+TGG | + | chr4_3:14070870-14070889 | Msa0631280:CDS | 40.0% | |
| ATTCCCAAATGGCTACAAGA+GGG | + | chr4_3:14070881-14070900 | Msa0631280:CDS | 40.0% | |
| ! | TCACCTTGTTCTGAGCTCTT+TGG | + | chr4_3:14069373-14069392 | Msa0631280:CDS | 45.0% |
| ! | CACCTTGTTCTGAGCTCTTT+GGG | + | chr4_3:14069374-14069393 | Msa0631280:CDS | 45.0% |
| GATTCCCAAATGGCTACAAG+AGG | + | chr4_3:14070880-14070899 | Msa0631280:CDS | 45.0% | |
| TTCCCAAATGGCTACAAGAG+GGG | + | chr4_3:14070882-14070901 | Msa0631280:CDS | 45.0% | |
| GCATATGCCTAGAGTTGACA+AGG | - | chr4_3:14071060-14071079 | None:intergenic | 45.0% | |
| CTCTAGGCATATGCTTCATC+AGG | + | chr4_3:14071066-14071085 | Msa0631280:intron | 45.0% | |
| ! | TCACCTTGTTCTGAGCTCTT+TGG | + | chr4_3:14069373-14069392 | Msa0631280:CDS | 45.0% |
| ! | CACCTTGTTCTGAGCTCTTT+GGG | + | chr4_3:14069374-14069393 | Msa0631280:CDS | 45.0% |
| GATTCCCAAATGGCTACAAG+AGG | + | chr4_3:14070880-14070899 | Msa0631280:CDS | 45.0% | |
| TTCCCAAATGGCTACAAGAG+GGG | + | chr4_3:14070882-14070901 | Msa0631280:CDS | 45.0% | |
| GCATATGCCTAGAGTTGACA+AGG | - | chr4_3:14071060-14071079 | None:intergenic | 45.0% | |
| CTCTAGGCATATGCTTCATC+AGG | + | chr4_3:14071066-14071085 | Msa0631280:intron | 45.0% | |
| !! | AATAGTTATTAATTATTATT+TGG | - | chr4_3:14070122-14070141 | None:intergenic | 5.0% |
| !! | AATAGTTATTAATTATTATT+TGG | - | chr4_3:14070122-14070141 | None:intergenic | 5.0% |
| GACCCAAAGAGCTCAGAACA+AGG | - | chr4_3:14069379-14069398 | None:intergenic | 50.0% | |
| ! | TCTGTGCGATCTGAAGTGAG+TGG | + | chr4_3:14069937-14069956 | Msa0631280:CDS | 50.0% |
| TGGGAATCATCTTCTCCTCC+AGG | - | chr4_3:14070868-14070887 | None:intergenic | 50.0% | |
| GTCCCCTCTTGTAGCCATTT+GGG | - | chr4_3:14070887-14070906 | None:intergenic | 50.0% | |
| AGTCCCCTCTTGTAGCCATT+TGG | - | chr4_3:14070888-14070907 | None:intergenic | 50.0% | |
| AAATGGCTACAAGAGGGGAC+TGG | + | chr4_3:14070887-14070906 | Msa0631280:CDS | 50.0% | |
| GACCCAAAGAGCTCAGAACA+AGG | - | chr4_3:14069379-14069398 | None:intergenic | 50.0% | |
| ! | TCTGTGCGATCTGAAGTGAG+TGG | + | chr4_3:14069937-14069956 | Msa0631280:CDS | 50.0% |
| TGGGAATCATCTTCTCCTCC+AGG | - | chr4_3:14070868-14070887 | None:intergenic | 50.0% | |
| GTCCCCTCTTGTAGCCATTT+GGG | - | chr4_3:14070887-14070906 | None:intergenic | 50.0% | |
| AGTCCCCTCTTGTAGCCATT+TGG | - | chr4_3:14070888-14070907 | None:intergenic | 50.0% | |
| AAATGGCTACAAGAGGGGAC+TGG | + | chr4_3:14070887-14070906 | Msa0631280:CDS | 50.0% | |
| TGGCTACAAGAGGGGACTGG+TGG | + | chr4_3:14070890-14070909 | Msa0631280:CDS | 60.0% | |
| ! | TACAAGAGGGGACTGGTGGC+AGG | + | chr4_3:14070894-14070913 | Msa0631280:CDS | 60.0% |
| ! | ACAAGAGGGGACTGGTGGCA+GGG | + | chr4_3:14070895-14070914 | Msa0631280:CDS | 60.0% |
| TGGCTACAAGAGGGGACTGG+TGG | + | chr4_3:14070890-14070909 | Msa0631280:CDS | 60.0% | |
| ! | TACAAGAGGGGACTGGTGGC+AGG | + | chr4_3:14070894-14070913 | Msa0631280:CDS | 60.0% |
| ! | ACAAGAGGGGACTGGTGGCA+GGG | + | chr4_3:14070895-14070914 | Msa0631280:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 14069337 | 14071291 | 14069337 | ID=Msa0631280;Name=Msa0631280 |
| chr4_3 | mRNA | 14069337 | 14071291 | 14069337 | ID=Msa0631280-mRNA-1;Parent=Msa0631280;Name=Msa0631280-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.75|0.4|0.8|1|1|5|0|167 |
| chr4_3 | exon | 14069337 | 14069468 | 14069337 | ID=Msa0631280-mRNA-1:exon:3921;Parent=Msa0631280-mRNA-1 |
| chr4_3 | exon | 14069922 | 14070003 | 14069922 | ID=Msa0631280-mRNA-1:exon:3922;Parent=Msa0631280-mRNA-1 |
| chr4_3 | exon | 14070420 | 14070595 | 14070420 | ID=Msa0631280-mRNA-1:exon:3923;Parent=Msa0631280-mRNA-1 |
| chr4_3 | exon | 14070856 | 14070916 | 14070856 | ID=Msa0631280-mRNA-1:exon:3924;Parent=Msa0631280-mRNA-1 |
| chr4_3 | exon | 14071239 | 14071291 | 14071239 | ID=Msa0631280-mRNA-1:exon:3925;Parent=Msa0631280-mRNA-1 |
| chr4_3 | CDS | 14069337 | 14069468 | 14069337 | ID=Msa0631280-mRNA-1:cds;Parent=Msa0631280-mRNA-1 |
| chr4_3 | CDS | 14069922 | 14070003 | 14069922 | ID=Msa0631280-mRNA-1:cds;Parent=Msa0631280-mRNA-1 |
| chr4_3 | CDS | 14070420 | 14070595 | 14070420 | ID=Msa0631280-mRNA-1:cds;Parent=Msa0631280-mRNA-1 |
| chr4_3 | CDS | 14070856 | 14070916 | 14070856 | ID=Msa0631280-mRNA-1:cds;Parent=Msa0631280-mRNA-1 |
| chr4_3 | CDS | 14071239 | 14071291 | 14071239 | ID=Msa0631280-mRNA-1:cds;Parent=Msa0631280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
