Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590970 | XP_013454925.1 | 90.968 | 155 | 8 | 2 | 1 | 149 | 1 | 155 | 5.55e-90 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0534790 | Msa0590970 | 0.890071 | 1.372214e-73 | -8.615850e-47 |
| Msa0590970 | Msa0631280 | 0.871997 | 4.459882e-67 | -8.615850e-47 |
| Msa0590970 | Msa0669550 | 0.879577 | 1.112087e-69 | -8.615850e-47 |
| Msa0590970 | Msa0877410 | 0.801054 | 1.079222e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590970 | MtrunA17_Chr4g0008731 | 90.968 | 155 | 8 | 2 | 1 | 149 | 1 | 155 | 5.10e-94 | 270 |
| Msa0590970 | MtrunA17_Chr7g0240431 | 52.555 | 137 | 58 | 3 | 18 | 149 | 21 | 155 | 4.00e-43 | 141 |
| Msa0590970 | MtrunA17_Chr4g0008721 | 49.007 | 151 | 72 | 4 | 1 | 148 | 1 | 149 | 8.99e-36 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590970 | AT5G02020.1 | 52.985 | 134 | 55 | 4 | 17 | 149 | 22 | 148 | 1.64e-32 | 114 |
| Msa0590970 | AT5G02020.2 | 50.877 | 114 | 50 | 4 | 17 | 128 | 22 | 131 | 2.17e-21 | 85.1 |
| Msa0590970 | AT2G39855.2 | 34.586 | 133 | 72 | 4 | 18 | 148 | 21 | 140 | 1.67e-13 | 64.7 |
| Msa0590970 | AT2G39855.4 | 34.586 | 133 | 72 | 4 | 18 | 148 | 21 | 140 | 1.67e-13 | 64.7 |
| Msa0590970 | AT5G59080.2 | 33.813 | 139 | 64 | 3 | 16 | 149 | 19 | 134 | 3.21e-13 | 63.9 |
| Msa0590970 | AT5G59080.1 | 33.813 | 139 | 64 | 3 | 16 | 149 | 19 | 134 | 3.21e-13 | 63.9 |
| Msa0590970 | AT3G55646.1 | 32.500 | 120 | 68 | 2 | 30 | 149 | 39 | 145 | 1.12e-11 | 60.1 |
Find 31 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCTTCTGGAATTTA+TGG | 0.132630 | 4_2:+14939052 | Msa0590970:CDS |
| CACTCATCATCTTCTTCTTC+TGG | 0.222052 | 4_2:+14939043 | Msa0590970:CDS |
| TCTCCTTGTTCTGAGCTCTT+TGG | 0.224503 | 4_2:+14939007 | Msa0590970:CDS |
| CTCCTTGTTCTGAGCTCTTT+GGG | 0.234708 | 4_2:+14939008 | Msa0590970:CDS |
| CTTAGTTCATCAATCTATTA+TGG | 0.252777 | 4_2:+14940291 | Msa0590970:CDS |
| TACAAGAGGGGACTGGTGGC+AGG | 0.416058 | 4_2:+14940682 | Msa0590970:CDS |
| CTCTAGGCATATGCTTCATC+AGG | 0.438414 | 4_2:+14940845 | Msa0590970:CDS |
| AGTACCTTGAGTAACAGTTT+TGG | 0.440213 | 4_2:-14939570 | None:intergenic |
| AACTTATAGCACAAGAATCC+TGG | 0.444574 | 4_2:+14940635 | Msa0590970:intron |
| TGAGAATCATCTTCTCCTCC+AGG | 0.452654 | 4_2:-14940653 | None:intergenic |
| TAATTGTTGTTGCAGGTACA+TGG | 0.466921 | 4_2:+14941003 | Msa0590970:intron |
| GAGGTTGAGGATATATGTCT+TGG | 0.479701 | 4_2:-14940317 | None:intergenic |
| CATAATAGATTGATGAACTA+AGG | 0.485902 | 4_2:-14940290 | None:intergenic |
| TTCAAAGGAGAAAGAATGGA+AGG | 0.515739 | 4_2:+14938956 | None:intergenic |
| AGGAGAAGATGATTCTCAAA+TGG | 0.516330 | 4_2:+14940658 | Msa0590970:CDS |
| AAATCATCCTTGTCAACTCT+AGG | 0.568857 | 4_2:+14940829 | Msa0590970:CDS |
| ACAAGAGGGGACTGGTGGCA+GGG | 0.569843 | 4_2:+14940683 | Msa0590970:CDS |
| TTATAGTCAATCTAGTTACA+TGG | 0.576174 | 4_2:+14941028 | Msa0590970:CDS |
| AGTTCATCAATCTATTATGG+TGG | 0.597056 | 4_2:+14940294 | Msa0590970:CDS |
| AACACCAAAACTGTTACTCA+AGG | 0.603702 | 4_2:+14939566 | Msa0590970:CDS |
| AAATGGCTACAAGAGGGGAC+TGG | 0.608932 | 4_2:+14940675 | Msa0590970:CDS |
| TTCCTCTTTAAAGACAATGG+TGG | 0.622811 | 4_2:+14940198 | Msa0590970:intron |
| GATTCTCAAATGGCTACAAG+AGG | 0.629539 | 4_2:+14940668 | Msa0590970:CDS |
| ATTCTCAAATGGCTACAAGA+GGG | 0.629920 | 4_2:+14940669 | Msa0590970:CDS |
| TGGCTACAAGAGGGGACTGG+TGG | 0.631380 | 4_2:+14940678 | Msa0590970:CDS |
| GACCCAAAGAGCTCAGAACA+AGG | 0.632926 | 4_2:-14939010 | None:intergenic |
| TTCTCAAATGGCTACAAGAG+GGG | 0.633626 | 4_2:+14940670 | Msa0590970:CDS |
| GCATATGCCTAGAGTTGACA+AGG | 0.640104 | 4_2:-14940836 | None:intergenic |
| ATTGATGAACTAAGGTGACA+TGG | 0.710947 | 4_2:-14940282 | None:intergenic |
| TTATAGCACAAGAATCCTGG+AGG | 0.713575 | 4_2:+14940638 | Msa0590970:intron |
| TCTGTGCGATCTGAAGTGAG+TGG | 0.794018 | 4_2:+14939521 | Msa0590970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATATTAAAATATAATA+TGG | + | chr4_2:14939637-14939656 | Msa0590970:intron | 0.0% |
| !! | TAATATATTAAAATATAATA+TGG | + | chr4_2:14939637-14939656 | Msa0590970:intron | 0.0% |
| !!! | TTTTTTTTTATGTGTTTTTT+TGG | + | chr4_2:14939614-14939633 | Msa0590970:intron | 10.0% |
| !!! | AATTAAAGAATTTTTTCTAT+AGG | - | chr4_2:14939911-14939930 | None:intergenic | 10.0% |
| !! | TAAAAAAAAAAAAAACAAAG+TGG | - | chr4_2:14940519-14940538 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTATGTGTTTTTT+TGG | + | chr4_2:14939614-14939633 | Msa0590970:intron | 10.0% |
| !!! | AATTAAAGAATTTTTTCTAT+AGG | - | chr4_2:14939911-14939930 | None:intergenic | 10.0% |
| !! | TAAAAAAAAAAAAAACAAAG+TGG | - | chr4_2:14940519-14940538 | None:intergenic | 10.0% |
| !! | CTTAACCAATTATATTTAAT+GGG | - | chr4_2:14939782-14939801 | None:intergenic | 15.0% |
| !!! | TATTTTTTTATATACTACTC+TGG | + | chr4_2:14940424-14940443 | Msa0590970:intron | 15.0% |
| !! | TCAAATAAAAATGATGTATA+TGG | + | chr4_2:14940470-14940489 | Msa0590970:intron | 15.0% |
| !! | CTTAACCAATTATATTTAAT+GGG | - | chr4_2:14939782-14939801 | None:intergenic | 15.0% |
| !!! | TATTTTTTTATATACTACTC+TGG | + | chr4_2:14940424-14940443 | Msa0590970:intron | 15.0% |
| !! | TCAAATAAAAATGATGTATA+TGG | + | chr4_2:14940470-14940489 | Msa0590970:intron | 15.0% |
| !! | CAATTCAAGAAAATGAAAAA+AGG | - | chr4_2:14939475-14939494 | None:intergenic | 20.0% |
| !! | AACACATAAAAAAAAAACAG+AGG | - | chr4_2:14939610-14939629 | None:intergenic | 20.0% |
| !! | TTTGACCCATTAAATATAAT+TGG | + | chr4_2:14939774-14939793 | Msa0590970:intron | 20.0% |
| !! | GCTTAACCAATTATATTTAA+TGG | - | chr4_2:14939783-14939802 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTACACTCACTT+TGG | - | chr4_2:14940370-14940389 | None:intergenic | 20.0% |
| !! | AAAAACAAAGTGGATATATT+TGG | - | chr4_2:14940509-14940528 | None:intergenic | 20.0% |
| !!! | TGACAAAAATTAGATTTTTG+TGG | + | chr4_2:14940720-14940739 | Msa0590970:intron | 20.0% |
| !! | CAATTCAAGAAAATGAAAAA+AGG | - | chr4_2:14939475-14939494 | None:intergenic | 20.0% |
| !! | AACACATAAAAAAAAAACAG+AGG | - | chr4_2:14939610-14939629 | None:intergenic | 20.0% |
| !! | TTTGACCCATTAAATATAAT+TGG | + | chr4_2:14939774-14939793 | Msa0590970:intron | 20.0% |
| !! | GCTTAACCAATTATATTTAA+TGG | - | chr4_2:14939783-14939802 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTACACTCACTT+TGG | - | chr4_2:14940370-14940389 | None:intergenic | 20.0% |
| !! | AAAAACAAAGTGGATATATT+TGG | - | chr4_2:14940509-14940528 | None:intergenic | 20.0% |
| !!! | TGACAAAAATTAGATTTTTG+TGG | + | chr4_2:14940720-14940739 | Msa0590970:intron | 20.0% |
| ! | GAAGGAAAAAATAAGCAAAA+GGG | + | chr4_2:14938974-14938993 | Msa0590970:CDS | 25.0% |
| !!! | AGAAAAAGCATTATTACCTT+AGG | - | chr4_2:14939100-14939119 | None:intergenic | 25.0% |
| !! | TTTTATTCAACCACATTTCA+TGG | + | chr4_2:14939157-14939176 | Msa0590970:intron | 25.0% |
| ! | AAAAACAAAACCATGAAATG+TGG | - | chr4_2:14939170-14939189 | None:intergenic | 25.0% |
| ! | TAAATTCAATAACCAGATGA+AGG | - | chr4_2:14939425-14939444 | None:intergenic | 25.0% |
| !!! | ATTGTGTTGATTCAGATTTT+AGG | + | chr4_2:14939491-14939510 | Msa0590970:intron | 25.0% |
| !!! | TTGTGTTGATTCAGATTTTA+GGG | + | chr4_2:14939492-14939511 | Msa0590970:intron | 25.0% |
| !! | AGTAACAGCATATTTCATTT+TGG | + | chr4_2:14939669-14939688 | Msa0590970:intron | 25.0% |
| ! | TGTACATAATGTTCCATATA+TGG | - | chr4_2:14939810-14939829 | None:intergenic | 25.0% |
| !!! | ATTGTTTTACCTAAATCTCT+AGG | + | chr4_2:14939862-14939881 | Msa0590970:intron | 25.0% |
| ! | TCTGTATTTACATGAGAAAA+AGG | - | chr4_2:14939983-14940002 | None:intergenic | 25.0% |
| ! | AATACAGATAGCATCTTTAA+AGG | + | chr4_2:14939995-14940014 | Msa0590970:intron | 25.0% |
| !!! | ATTTTCCTCTTTAAAGACAA+TGG | + | chr4_2:14940195-14940214 | Msa0590970:intron | 25.0% |
| !! | TGATATGAGTTTTCTCTATA+AGG | + | chr4_2:14940245-14940264 | Msa0590970:CDS | 25.0% |
| !! | GATATGAGTTTTCTCTATAA+GGG | + | chr4_2:14940246-14940265 | Msa0590970:CDS | 25.0% |
| ! | CATAATAGATTGATGAACTA+AGG | - | chr4_2:14940293-14940312 | None:intergenic | 25.0% |
| ! | CTTAGTTCATCAATCTATTA+TGG | + | chr4_2:14940291-14940310 | Msa0590970:CDS | 25.0% |
| ! | TGTAAATATAATACTCCTTC+TGG | - | chr4_2:14940567-14940586 | None:intergenic | 25.0% |
| !!! | GAAGGAGTATTATATTTACA+TGG | + | chr4_2:14940567-14940586 | Msa0590970:intron | 25.0% |
| ! | ATATTATGAAACCTATATCC+AGG | + | chr4_2:14940876-14940895 | Msa0590970:intron | 25.0% |
| !! | ATTACTTTAATTGTTGTTGC+AGG | + | chr4_2:14940996-14941015 | Msa0590970:intron | 25.0% |
| ! | TTATAGTCAATCTAGTTACA+TGG | + | chr4_2:14941028-14941047 | Msa0590970:CDS | 25.0% |
| ! | GAAGGAAAAAATAAGCAAAA+GGG | + | chr4_2:14938974-14938993 | Msa0590970:CDS | 25.0% |
| !!! | AGAAAAAGCATTATTACCTT+AGG | - | chr4_2:14939100-14939119 | None:intergenic | 25.0% |
| !! | TTTTATTCAACCACATTTCA+TGG | + | chr4_2:14939157-14939176 | Msa0590970:intron | 25.0% |
| ! | AAAAACAAAACCATGAAATG+TGG | - | chr4_2:14939170-14939189 | None:intergenic | 25.0% |
| ! | TAAATTCAATAACCAGATGA+AGG | - | chr4_2:14939425-14939444 | None:intergenic | 25.0% |
| !!! | ATTGTGTTGATTCAGATTTT+AGG | + | chr4_2:14939491-14939510 | Msa0590970:intron | 25.0% |
| !!! | TTGTGTTGATTCAGATTTTA+GGG | + | chr4_2:14939492-14939511 | Msa0590970:intron | 25.0% |
| !! | AGTAACAGCATATTTCATTT+TGG | + | chr4_2:14939669-14939688 | Msa0590970:intron | 25.0% |
| ! | TGTACATAATGTTCCATATA+TGG | - | chr4_2:14939810-14939829 | None:intergenic | 25.0% |
| !!! | ATTGTTTTACCTAAATCTCT+AGG | + | chr4_2:14939862-14939881 | Msa0590970:intron | 25.0% |
| ! | TCTGTATTTACATGAGAAAA+AGG | - | chr4_2:14939983-14940002 | None:intergenic | 25.0% |
| ! | AATACAGATAGCATCTTTAA+AGG | + | chr4_2:14939995-14940014 | Msa0590970:intron | 25.0% |
| !!! | ATTTTCCTCTTTAAAGACAA+TGG | + | chr4_2:14940195-14940214 | Msa0590970:intron | 25.0% |
| !! | TGATATGAGTTTTCTCTATA+AGG | + | chr4_2:14940245-14940264 | Msa0590970:CDS | 25.0% |
| !! | GATATGAGTTTTCTCTATAA+GGG | + | chr4_2:14940246-14940265 | Msa0590970:CDS | 25.0% |
| ! | CATAATAGATTGATGAACTA+AGG | - | chr4_2:14940293-14940312 | None:intergenic | 25.0% |
| ! | CTTAGTTCATCAATCTATTA+TGG | + | chr4_2:14940291-14940310 | Msa0590970:CDS | 25.0% |
| ! | TGTAAATATAATACTCCTTC+TGG | - | chr4_2:14940567-14940586 | None:intergenic | 25.0% |
| !!! | GAAGGAGTATTATATTTACA+TGG | + | chr4_2:14940567-14940586 | Msa0590970:intron | 25.0% |
| ! | ATATTATGAAACCTATATCC+AGG | + | chr4_2:14940876-14940895 | Msa0590970:intron | 25.0% |
| !! | ATTACTTTAATTGTTGTTGC+AGG | + | chr4_2:14940996-14941015 | Msa0590970:intron | 25.0% |
| ! | TTATAGTCAATCTAGTTACA+TGG | + | chr4_2:14941028-14941047 | Msa0590970:CDS | 25.0% |
| GGAAGGAAAAAATAAGCAAA+AGG | + | chr4_2:14938973-14938992 | Msa0590970:CDS | 30.0% | |
| !! | TCTTCTTCTTCTGGAATTTA+TGG | + | chr4_2:14939052-14939071 | Msa0590970:CDS | 30.0% |
| AGGTGATTGAGTAGAAAAAA+TGG | - | chr4_2:14939080-14939099 | None:intergenic | 30.0% | |
| ! | TTTTTCTACTCAATCACCTA+AGG | + | chr4_2:14939081-14939100 | Msa0590970:CDS | 30.0% |
| ATAACCAGATGAAGGAAATA+AGG | - | chr4_2:14939417-14939436 | None:intergenic | 30.0% | |
| ! | TGGTTAAGCTTTTCCATATA+TGG | + | chr4_2:14939794-14939813 | Msa0590970:intron | 30.0% |
| TACATTGTACCTAGAGATTT+AGG | - | chr4_2:14939874-14939893 | None:intergenic | 30.0% | |
| TAAAGAGGAAAATACTTGTG+TGG | - | chr4_2:14940188-14940207 | None:intergenic | 30.0% | |
| AGTTCATCAATCTATTATGG+TGG | + | chr4_2:14940294-14940313 | Msa0590970:CDS | 30.0% | |
| ! | TGTTTATATTTGAGACCAGA+AGG | + | chr4_2:14940549-14940568 | Msa0590970:intron | 30.0% |
| GGAAGGAAAAAATAAGCAAA+AGG | + | chr4_2:14938973-14938992 | Msa0590970:CDS | 30.0% | |
| !! | TCTTCTTCTTCTGGAATTTA+TGG | + | chr4_2:14939052-14939071 | Msa0590970:CDS | 30.0% |
| AGGTGATTGAGTAGAAAAAA+TGG | - | chr4_2:14939080-14939099 | None:intergenic | 30.0% | |
| ! | TTTTTCTACTCAATCACCTA+AGG | + | chr4_2:14939081-14939100 | Msa0590970:CDS | 30.0% |
| ATAACCAGATGAAGGAAATA+AGG | - | chr4_2:14939417-14939436 | None:intergenic | 30.0% | |
| ! | TGGTTAAGCTTTTCCATATA+TGG | + | chr4_2:14939794-14939813 | Msa0590970:intron | 30.0% |
| TACATTGTACCTAGAGATTT+AGG | - | chr4_2:14939874-14939893 | None:intergenic | 30.0% | |
| TAAAGAGGAAAATACTTGTG+TGG | - | chr4_2:14940188-14940207 | None:intergenic | 30.0% | |
| AGTTCATCAATCTATTATGG+TGG | + | chr4_2:14940294-14940313 | Msa0590970:CDS | 30.0% | |
| ! | TGTTTATATTTGAGACCAGA+AGG | + | chr4_2:14940549-14940568 | Msa0590970:intron | 30.0% |
| TTAGACAACAAACTCGCTTT+CGG | - | chr4_2:14939285-14939304 | None:intergenic | 35.0% | |
| ! | ACGTGTTAGTTTCGTGTAAA+TGG | + | chr4_2:14939367-14939386 | Msa0590970:intron | 35.0% |
| ! | TCAACCTTATTTCCTTCATC+TGG | + | chr4_2:14939410-14939429 | Msa0590970:intron | 35.0% |
| AACACCAAAACTGTTACTCA+AGG | + | chr4_2:14939566-14939585 | Msa0590970:CDS | 35.0% | |
| ! | AGTACCTTGAGTAACAGTTT+TGG | - | chr4_2:14939573-14939592 | None:intergenic | 35.0% |
| TTAAAGGAGAAAGACTTGTG+TGG | + | chr4_2:14940011-14940030 | Msa0590970:intron | 35.0% | |
| AAGAGAGAAGAGAGAGAAAA+TGG | - | chr4_2:14940107-14940126 | None:intergenic | 35.0% | |
| TTGGTCACAACCAAAGAAAT+GGG | - | chr4_2:14940143-14940162 | None:intergenic | 35.0% | |
| TTTGGTTGTGACCAAGAAAT+TGG | + | chr4_2:14940148-14940167 | Msa0590970:intron | 35.0% | |
| TTGGTTGTGACCAAGAAATT+GGG | + | chr4_2:14940149-14940168 | Msa0590970:intron | 35.0% | |
| ! | TTCCTCTTTAAAGACAATGG+TGG | + | chr4_2:14940198-14940217 | Msa0590970:intron | 35.0% |
| ATTGATGAACTAAGGTGACA+TGG | - | chr4_2:14940285-14940304 | None:intergenic | 35.0% | |
| !!! | TTTTGAGTACTTTGAGGTTG+AGG | - | chr4_2:14940333-14940352 | None:intergenic | 35.0% |
| AACTTATAGCACAAGAATCC+TGG | + | chr4_2:14940635-14940654 | Msa0590970:intron | 35.0% | |
| AGGAGAAGATGATTCTCAAA+TGG | + | chr4_2:14940658-14940677 | Msa0590970:CDS | 35.0% | |
| ATTCTCAAATGGCTACAAGA+GGG | + | chr4_2:14940669-14940688 | Msa0590970:CDS | 35.0% | |
| !! | CTTGTTATCTTTTGATCCAC+AGG | + | chr4_2:14940791-14940810 | Msa0590970:intron | 35.0% |
| TCAATAATAGAGACTTCCTG+TGG | - | chr4_2:14940810-14940829 | None:intergenic | 35.0% | |
| AAATCATCCTTGTCAACTCT+AGG | + | chr4_2:14940829-14940848 | Msa0590970:CDS | 35.0% | |
| TATATGTGTCACCTGGATAT+AGG | - | chr4_2:14940890-14940909 | None:intergenic | 35.0% | |
| CATGAAATATATGTGTCACC+TGG | - | chr4_2:14940897-14940916 | None:intergenic | 35.0% | |
| ! | TAATTGTTGTTGCAGGTACA+TGG | + | chr4_2:14941003-14941022 | Msa0590970:intron | 35.0% |
| TTAGACAACAAACTCGCTTT+CGG | - | chr4_2:14939285-14939304 | None:intergenic | 35.0% | |
| ! | ACGTGTTAGTTTCGTGTAAA+TGG | + | chr4_2:14939367-14939386 | Msa0590970:intron | 35.0% |
| ! | TCAACCTTATTTCCTTCATC+TGG | + | chr4_2:14939410-14939429 | Msa0590970:intron | 35.0% |
| AACACCAAAACTGTTACTCA+AGG | + | chr4_2:14939566-14939585 | Msa0590970:CDS | 35.0% | |
| ! | AGTACCTTGAGTAACAGTTT+TGG | - | chr4_2:14939573-14939592 | None:intergenic | 35.0% |
| TTAAAGGAGAAAGACTTGTG+TGG | + | chr4_2:14940011-14940030 | Msa0590970:intron | 35.0% | |
| AAGAGAGAAGAGAGAGAAAA+TGG | - | chr4_2:14940107-14940126 | None:intergenic | 35.0% | |
| TTGGTCACAACCAAAGAAAT+GGG | - | chr4_2:14940143-14940162 | None:intergenic | 35.0% | |
| TTTGGTTGTGACCAAGAAAT+TGG | + | chr4_2:14940148-14940167 | Msa0590970:intron | 35.0% | |
| TTGGTTGTGACCAAGAAATT+GGG | + | chr4_2:14940149-14940168 | Msa0590970:intron | 35.0% | |
| ! | TTCCTCTTTAAAGACAATGG+TGG | + | chr4_2:14940198-14940217 | Msa0590970:intron | 35.0% |
| ATTGATGAACTAAGGTGACA+TGG | - | chr4_2:14940285-14940304 | None:intergenic | 35.0% | |
| !!! | TTTTGAGTACTTTGAGGTTG+AGG | - | chr4_2:14940333-14940352 | None:intergenic | 35.0% |
| AACTTATAGCACAAGAATCC+TGG | + | chr4_2:14940635-14940654 | Msa0590970:intron | 35.0% | |
| AGGAGAAGATGATTCTCAAA+TGG | + | chr4_2:14940658-14940677 | Msa0590970:CDS | 35.0% | |
| ATTCTCAAATGGCTACAAGA+GGG | + | chr4_2:14940669-14940688 | Msa0590970:CDS | 35.0% | |
| !! | CTTGTTATCTTTTGATCCAC+AGG | + | chr4_2:14940791-14940810 | Msa0590970:intron | 35.0% |
| TCAATAATAGAGACTTCCTG+TGG | - | chr4_2:14940810-14940829 | None:intergenic | 35.0% | |
| AAATCATCCTTGTCAACTCT+AGG | + | chr4_2:14940829-14940848 | Msa0590970:CDS | 35.0% | |
| TATATGTGTCACCTGGATAT+AGG | - | chr4_2:14940890-14940909 | None:intergenic | 35.0% | |
| CATGAAATATATGTGTCACC+TGG | - | chr4_2:14940897-14940916 | None:intergenic | 35.0% | |
| ! | TAATTGTTGTTGCAGGTACA+TGG | + | chr4_2:14941003-14941022 | Msa0590970:intron | 35.0% |
| CACTCATCATCTTCTTCTTC+TGG | + | chr4_2:14939043-14939062 | Msa0590970:CDS | 40.0% | |
| TCGCTTTCGGACATTAATGT+TGG | - | chr4_2:14939272-14939291 | None:intergenic | 40.0% | |
| TCTCTTCTCTCCCATTTCTT+TGG | + | chr4_2:14940130-14940149 | Msa0590970:intron | 40.0% | |
| CTTGGTCACAACCAAAGAAA+TGG | - | chr4_2:14940144-14940163 | None:intergenic | 40.0% | |
| AGGGATCAAACCCAATTTCT+TGG | - | chr4_2:14940162-14940181 | None:intergenic | 40.0% | |
| AAGAAATTGGGTTTGATCCC+TGG | + | chr4_2:14940161-14940180 | Msa0590970:intron | 40.0% | |
| GAAAATACTTGTGTGGACCA+GGG | - | chr4_2:14940181-14940200 | None:intergenic | 40.0% | |
| ! | CACCACCATTGTCTTTAAAG+AGG | - | chr4_2:14940203-14940222 | None:intergenic | 40.0% |
| GAGGTTGAGGATATATGTCT+TGG | - | chr4_2:14940320-14940339 | None:intergenic | 40.0% | |
| !! | GCAGCATTTTGAGTACTTTG+AGG | - | chr4_2:14940339-14940358 | None:intergenic | 40.0% |
| TTATAGCACAAGAATCCTGG+AGG | + | chr4_2:14940638-14940657 | Msa0590970:intron | 40.0% | |
| GATTCTCAAATGGCTACAAG+AGG | + | chr4_2:14940668-14940687 | Msa0590970:CDS | 40.0% | |
| TTCTCAAATGGCTACAAGAG+GGG | + | chr4_2:14940670-14940689 | Msa0590970:CDS | 40.0% | |
| CACTCATCATCTTCTTCTTC+TGG | + | chr4_2:14939043-14939062 | Msa0590970:CDS | 40.0% | |
| TCGCTTTCGGACATTAATGT+TGG | - | chr4_2:14939272-14939291 | None:intergenic | 40.0% | |
| TCTCTTCTCTCCCATTTCTT+TGG | + | chr4_2:14940130-14940149 | Msa0590970:intron | 40.0% | |
| CTTGGTCACAACCAAAGAAA+TGG | - | chr4_2:14940144-14940163 | None:intergenic | 40.0% | |
| AGGGATCAAACCCAATTTCT+TGG | - | chr4_2:14940162-14940181 | None:intergenic | 40.0% | |
| AAGAAATTGGGTTTGATCCC+TGG | + | chr4_2:14940161-14940180 | Msa0590970:intron | 40.0% | |
| GAAAATACTTGTGTGGACCA+GGG | - | chr4_2:14940181-14940200 | None:intergenic | 40.0% | |
| ! | CACCACCATTGTCTTTAAAG+AGG | - | chr4_2:14940203-14940222 | None:intergenic | 40.0% |
| GAGGTTGAGGATATATGTCT+TGG | - | chr4_2:14940320-14940339 | None:intergenic | 40.0% | |
| !! | GCAGCATTTTGAGTACTTTG+AGG | - | chr4_2:14940339-14940358 | None:intergenic | 40.0% |
| TTATAGCACAAGAATCCTGG+AGG | + | chr4_2:14940638-14940657 | Msa0590970:intron | 40.0% | |
| GATTCTCAAATGGCTACAAG+AGG | + | chr4_2:14940668-14940687 | Msa0590970:CDS | 40.0% | |
| TTCTCAAATGGCTACAAGAG+GGG | + | chr4_2:14940670-14940689 | Msa0590970:CDS | 40.0% | |
| ! | TCTCCTTGTTCTGAGCTCTT+TGG | + | chr4_2:14939007-14939026 | Msa0590970:CDS | 45.0% |
| ! | CTCCTTGTTCTGAGCTCTTT+GGG | + | chr4_2:14939008-14939027 | Msa0590970:CDS | 45.0% |
| TGTGACCAAACCCAATTGTG+TGG | - | chr4_2:14940044-14940063 | None:intergenic | 45.0% | |
| GGAAAATACTTGTGTGGACC+AGG | - | chr4_2:14940182-14940201 | None:intergenic | 45.0% | |
| TGAGAATCATCTTCTCCTCC+AGG | - | chr4_2:14940656-14940675 | None:intergenic | 45.0% | |
| GCATATGCCTAGAGTTGACA+AGG | - | chr4_2:14940839-14940858 | None:intergenic | 45.0% | |
| CTCTAGGCATATGCTTCATC+AGG | + | chr4_2:14940845-14940864 | Msa0590970:CDS | 45.0% | |
| ! | TCTCCTTGTTCTGAGCTCTT+TGG | + | chr4_2:14939007-14939026 | Msa0590970:CDS | 45.0% |
| ! | CTCCTTGTTCTGAGCTCTTT+GGG | + | chr4_2:14939008-14939027 | Msa0590970:CDS | 45.0% |
| TGTGACCAAACCCAATTGTG+TGG | - | chr4_2:14940044-14940063 | None:intergenic | 45.0% | |
| GGAAAATACTTGTGTGGACC+AGG | - | chr4_2:14940182-14940201 | None:intergenic | 45.0% | |
| TGAGAATCATCTTCTCCTCC+AGG | - | chr4_2:14940656-14940675 | None:intergenic | 45.0% | |
| GCATATGCCTAGAGTTGACA+AGG | - | chr4_2:14940839-14940858 | None:intergenic | 45.0% | |
| CTCTAGGCATATGCTTCATC+AGG | + | chr4_2:14940845-14940864 | Msa0590970:CDS | 45.0% | |
| !! | AATAGTTATTAATTATTATT+TGG | - | chr4_2:14939704-14939723 | None:intergenic | 5.0% |
| !! | AATAGTTATTAATTATTATT+TGG | - | chr4_2:14939704-14939723 | None:intergenic | 5.0% |
| GACCCAAAGAGCTCAGAACA+AGG | - | chr4_2:14939013-14939032 | None:intergenic | 50.0% | |
| ! | TCTGTGCGATCTGAAGTGAG+TGG | + | chr4_2:14939521-14939540 | Msa0590970:CDS | 50.0% |
| GAGAAAGACTTGTGTGGACC+AGG | + | chr4_2:14940017-14940036 | Msa0590970:intron | 50.0% | |
| TGGACCAGGACCACACAATT+GGG | + | chr4_2:14940031-14940050 | Msa0590970:intron | 50.0% | |
| CAAACCCAATTGTGTGGTCC+TGG | - | chr4_2:14940038-14940057 | None:intergenic | 50.0% | |
| CAGGACCACACAATTGGGTT+TGG | + | chr4_2:14940036-14940055 | Msa0590970:intron | 50.0% | |
| AAATGGCTACAAGAGGGGAC+TGG | + | chr4_2:14940675-14940694 | Msa0590970:CDS | 50.0% | |
| GACCCAAAGAGCTCAGAACA+AGG | - | chr4_2:14939013-14939032 | None:intergenic | 50.0% | |
| ! | TCTGTGCGATCTGAAGTGAG+TGG | + | chr4_2:14939521-14939540 | Msa0590970:CDS | 50.0% |
| GAGAAAGACTTGTGTGGACC+AGG | + | chr4_2:14940017-14940036 | Msa0590970:intron | 50.0% | |
| TGGACCAGGACCACACAATT+GGG | + | chr4_2:14940031-14940050 | Msa0590970:intron | 50.0% | |
| CAAACCCAATTGTGTGGTCC+TGG | - | chr4_2:14940038-14940057 | None:intergenic | 50.0% | |
| CAGGACCACACAATTGGGTT+TGG | + | chr4_2:14940036-14940055 | Msa0590970:intron | 50.0% | |
| AAATGGCTACAAGAGGGGAC+TGG | + | chr4_2:14940675-14940694 | Msa0590970:CDS | 50.0% | |
| GTGGACCAGGACCACACAAT+TGG | + | chr4_2:14940030-14940049 | Msa0590970:intron | 55.0% | |
| GTGGACCAGGACCACACAAT+TGG | + | chr4_2:14940030-14940049 | Msa0590970:intron | 55.0% | |
| TGGCTACAAGAGGGGACTGG+TGG | + | chr4_2:14940678-14940697 | Msa0590970:CDS | 60.0% | |
| ! | TACAAGAGGGGACTGGTGGC+AGG | + | chr4_2:14940682-14940701 | Msa0590970:CDS | 60.0% |
| ! | ACAAGAGGGGACTGGTGGCA+GGG | + | chr4_2:14940683-14940702 | Msa0590970:CDS | 60.0% |
| TGGCTACAAGAGGGGACTGG+TGG | + | chr4_2:14940678-14940697 | Msa0590970:CDS | 60.0% | |
| ! | TACAAGAGGGGACTGGTGGC+AGG | + | chr4_2:14940682-14940701 | Msa0590970:CDS | 60.0% |
| ! | ACAAGAGGGGACTGGTGGCA+GGG | + | chr4_2:14940683-14940702 | Msa0590970:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 14938971 | 14941059 | 14938971 | ID=Msa0590970;Name=Msa0590970 |
| chr4_2 | mRNA | 14938971 | 14941059 | 14938971 | ID=Msa0590970-mRNA-1;Parent=Msa0590970;Name=Msa0590970-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.4|0.33|0.66|1|1|6|0|180 |
| chr4_2 | exon | 14938971 | 14939102 | 14938971 | ID=Msa0590970-mRNA-1:exon:4269;Parent=Msa0590970-mRNA-1 |
| chr4_2 | exon | 14939506 | 14939587 | 14939506 | ID=Msa0590970-mRNA-1:exon:4270;Parent=Msa0590970-mRNA-1 |
| chr4_2 | exon | 14940211 | 14940371 | 14940211 | ID=Msa0590970-mRNA-1:exon:4271;Parent=Msa0590970-mRNA-1 |
| chr4_2 | exon | 14940644 | 14940715 | 14940644 | ID=Msa0590970-mRNA-1:exon:4272;Parent=Msa0590970-mRNA-1 |
| chr4_2 | exon | 14940813 | 14940866 | 14940813 | ID=Msa0590970-mRNA-1:exon:4273;Parent=Msa0590970-mRNA-1 |
| chr4_2 | exon | 14941018 | 14941059 | 14941018 | ID=Msa0590970-mRNA-1:exon:4274;Parent=Msa0590970-mRNA-1 |
| chr4_2 | CDS | 14938971 | 14939102 | 14938971 | ID=Msa0590970-mRNA-1:cds;Parent=Msa0590970-mRNA-1 |
| chr4_2 | CDS | 14939506 | 14939587 | 14939506 | ID=Msa0590970-mRNA-1:cds;Parent=Msa0590970-mRNA-1 |
| chr4_2 | CDS | 14940211 | 14940371 | 14940211 | ID=Msa0590970-mRNA-1:cds;Parent=Msa0590970-mRNA-1 |
| chr4_2 | CDS | 14940644 | 14940715 | 14940644 | ID=Msa0590970-mRNA-1:cds;Parent=Msa0590970-mRNA-1 |
| chr4_2 | CDS | 14940813 | 14940866 | 14940813 | ID=Msa0590970-mRNA-1:cds;Parent=Msa0590970-mRNA-1 |
| chr4_2 | CDS | 14941018 | 14941059 | 14941018 | ID=Msa0590970-mRNA-1:cds;Parent=Msa0590970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
