Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534790 | XP_013454925.1 | 93.548 | 155 | 9 | 1 | 1 | 154 | 1 | 155 | 1.24e-95 | 284 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534790 | A0A072UIR5 | 93.548 | 155 | 9 | 1 | 1 | 154 | 1 | 155 | 5.91e-96 | 284 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008410 | Msa0534790 | 0.804613 | 1.986300e-49 | -8.615850e-47 |
| Msa0137040 | Msa0534790 | 0.807322 | 5.348841e-50 | -8.615850e-47 |
| Msa0140300 | Msa0534790 | 0.807788 | 4.260294e-50 | -8.615850e-47 |
| Msa0143080 | Msa0534790 | 0.809773 | 1.603389e-50 | -8.615850e-47 |
| Msa0199690 | Msa0534790 | 0.808804 | 2.586687e-50 | -8.615850e-47 |
| Msa0236980 | Msa0534790 | 0.812681 | 3.752086e-51 | -8.615850e-47 |
| Msa0439230 | Msa0534790 | 0.802341 | 5.873370e-49 | -8.615850e-47 |
| Msa0453520 | Msa0534790 | 0.813646 | 2.303083e-51 | -8.615850e-47 |
| Msa0497420 | Msa0534790 | 0.807178 | 5.737050e-50 | -8.615850e-47 |
| Msa0534790 | Msa0590970 | 0.890071 | 1.372214e-73 | -8.615850e-47 |
| Msa0534790 | Msa0631280 | 0.902638 | 7.898752e-79 | -8.615850e-47 |
| Msa0534790 | Msa0663900 | 0.813881 | 2.044846e-51 | -8.615850e-47 |
| Msa0534790 | Msa0669550 | 0.853562 | 2.201328e-61 | -8.615850e-47 |
| Msa0534790 | Msa0692840 | 0.800201 | 1.610733e-48 | -8.615850e-47 |
| Msa0534790 | Msa0798380 | 0.805411 | 1.352195e-49 | -8.615850e-47 |
| Msa0534790 | Msa0871890 | 0.800245 | 1.577551e-48 | -8.615850e-47 |
| Msa0534790 | Msa0877410 | 0.802958 | 4.382015e-49 | -8.615850e-47 |
| Msa0534790 | Msa0905260 | 0.845696 | 3.456550e-59 | -8.615850e-47 |
| Msa0534790 | Msa0937240 | 0.829718 | 4.399865e-55 | -8.615850e-47 |
| Msa0534790 | Msa0967370 | 0.806022 | 1.006289e-49 | -8.615850e-47 |
| Msa0534790 | Msa0974530 | 0.846432 | 2.179758e-59 | -8.615850e-47 |
| Msa0534790 | Msa1012430 | 0.814810 | 1.274520e-51 | -8.615850e-47 |
| Msa0534790 | Msa1127140 | 0.803047 | 4.199198e-49 | -8.615850e-47 |
| Msa0534790 | Msa1295110 | 0.804385 | 2.216279e-49 | -8.615850e-47 |
| Msa0534790 | Msa1387190 | 0.804575 | 2.022737e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534790 | MtrunA17_Chr4g0008731 | 93.548 | 155 | 9 | 1 | 1 | 154 | 1 | 155 | 1.14e-99 | 284 |
| Msa0534790 | MtrunA17_Chr7g0240431 | 54.015 | 137 | 61 | 2 | 18 | 154 | 21 | 155 | 7.16e-46 | 148 |
| Msa0534790 | MtrunA17_Chr4g0008721 | 50.000 | 156 | 68 | 5 | 1 | 153 | 1 | 149 | 1.04e-36 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534790 | AT5G02020.1 | 50.725 | 138 | 57 | 4 | 17 | 154 | 22 | 148 | 1.02e-31 | 112 |
| Msa0534790 | AT5G02020.2 | 49.153 | 118 | 51 | 4 | 17 | 133 | 22 | 131 | 1.78e-20 | 83.2 |
| Msa0534790 | AT2G39855.2 | 34.783 | 138 | 70 | 5 | 18 | 153 | 21 | 140 | 9.14e-13 | 63.2 |
| Msa0534790 | AT2G39855.4 | 34.783 | 138 | 70 | 5 | 18 | 153 | 21 | 140 | 9.14e-13 | 63.2 |
| Msa0534790 | AT5G59080.2 | 32.639 | 144 | 64 | 3 | 16 | 154 | 19 | 134 | 2.82e-12 | 61.6 |
| Msa0534790 | AT5G59080.1 | 32.639 | 144 | 64 | 3 | 16 | 154 | 19 | 134 | 2.82e-12 | 61.6 |
| Msa0534790 | AT3G55646.1 | 31.200 | 125 | 68 | 2 | 30 | 154 | 39 | 145 | 5.43e-11 | 58.5 |
Find 49 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCTTCTGGAATTTA+TGG | 0.097212 | 4_1:+10414297 | Msa0534790:CDS |
| CACTCATCTTCTTCTTCTTC+TGG | 0.128858 | 4_1:+10414288 | Msa0534790:CDS |
| TCACCTTGTTCTGAGCTCTT+TGG | 0.224503 | 4_1:+10414252 | Msa0534790:CDS |
| CACCTTGTTCTGAGCTCTTT+GGG | 0.234708 | 4_1:+10414253 | Msa0534790:CDS |
| CTTAGTTCATCAATCTATTA+TGG | 0.252777 | 4_1:+10415378 | Msa0534790:CDS |
| TTACTCGGAGCAAGAAATTC+AGG | 0.345872 | 4_1:+10413347 | Msa0534790:five_prime_UTR |
| TTACCTTGAAAACTTTGTTC+AGG | 0.350953 | 4_1:+10413118 | Msa0534790:five_prime_UTR |
| TTATAGATGATTCCTATGTT+TGG | 0.356321 | 4_1:-10416148 | None:intergenic |
| AAAGAGGAGATAGAATCTTA+TGG | 0.384930 | 4_1:+10416104 | Msa0534790:exon |
| TACAAGAGGGGACTGGTGGC+AGG | 0.416058 | 4_1:+10415765 | Msa0534790:CDS |
| CTCTAGGCATATGCTTCATC+AGG | 0.438414 | 4_1:+10415937 | Msa0534790:CDS |
| AGTACCTTGAGTAACAGTTT+TGG | 0.440213 | 4_1:-10414847 | None:intergenic |
| AACTTATAGCACAAGAATCC+TGG | 0.444574 | 4_1:+10415718 | Msa0534790:intron |
| TGAGAATCATCTTCTCCTCC+AGG | 0.452654 | 4_1:-10415736 | None:intergenic |
| TTTCAAGCCGCAACTACGCT+TGG | 0.454615 | 4_1:+10412288 | Msa0534790:five_prime_UTR |
| AAGCGTAGTTGCGGCTTGAA+AGG | 0.455777 | 4_1:-10412286 | None:intergenic |
| TAATTGTTGTTGCAGGTACA+TGG | 0.466921 | 4_1:+10416049 | Msa0534790:intron |
| GAGGTTGAGGATATATGTCT+TGG | 0.479701 | 4_1:-10415404 | None:intergenic |
| CATAATAGATTGATGAACTA+AGG | 0.485902 | 4_1:-10415377 | None:intergenic |
| GGTGCAACACTAGTTGTATC+TGG | 0.492355 | 4_1:+10413312 | Msa0534790:intron |
| AGGAGAAGATGATTCTCAAA+TGG | 0.516330 | 4_1:+10415741 | Msa0534790:CDS |
| TTCAAAGGAGTAAGAATGGA+AGG | 0.520315 | 4_1:+10414201 | Msa0534790:intron |
| AGCGTAGTTGCGGCTTGAAA+GGG | 0.524369 | 4_1:-10412285 | None:intergenic |
| TGTGTTTGCAAGCCAAACAT+AGG | 0.558388 | 4_1:+10416136 | Msa0534790:three_prime_UTR |
| CAGAAAGCCAAGCGTAGTTG+CGG | 0.562474 | 4_1:-10412295 | None:intergenic |
| AAATCATCCTTGTCAACTCT+AGG | 0.568857 | 4_1:+10415921 | Msa0534790:CDS |
| ACAAGAGGGGACTGGTGGCA+GGG | 0.569843 | 4_1:+10415766 | Msa0534790:CDS |
| GAAGCAGTAACAGTGTGGTA+AGG | 0.573128 | 4_1:-10412239 | None:intergenic |
| TTATAGTCAATCTAGTTACA+TGG | 0.576174 | 4_1:+10416074 | Msa0534790:CDS |
| GTTACATGGATGAACTAAAG+AGG | 0.581768 | 4_1:+10416088 | Msa0534790:exon |
| GATAGCATCTTTAAAGACAA+TGG | 0.591645 | 4_1:+10415282 | Msa0534790:intron |
| TGGTGATGGTCGTTATTACT+CGG | 0.593597 | 4_1:+10413332 | Msa0534790:five_prime_UTR |
| AGTTCATCAATCTATTATGG+TGG | 0.597056 | 4_1:+10415381 | Msa0534790:CDS |
| AACTACGCTTGGCTTTCTGA+AGG | 0.602233 | 4_1:+10412299 | Msa0534790:five_prime_UTR |
| AACACCAAAACTGTTACTCA+AGG | 0.603702 | 4_1:+10414843 | Msa0534790:CDS |
| AAATGGCTACAAGAGGGGAC+TGG | 0.608932 | 4_1:+10415758 | Msa0534790:CDS |
| ACACTAGTTGTATCTGGTGA+TGG | 0.624944 | 4_1:+10413318 | Msa0534790:five_prime_UTR |
| GATTCTCAAATGGCTACAAG+AGG | 0.629539 | 4_1:+10415751 | Msa0534790:CDS |
| ATTCTCAAATGGCTACAAGA+GGG | 0.629920 | 4_1:+10415752 | Msa0534790:CDS |
| TGGCTACAAGAGGGGACTGG+TGG | 0.631380 | 4_1:+10415761 | Msa0534790:CDS |
| TTCTCAAATGGCTACAAGAG+GGG | 0.633626 | 4_1:+10415753 | Msa0534790:CDS |
| GCATATGCCTAGAGTTGACA+AGG | 0.640104 | 4_1:-10415928 | None:intergenic |
| GACCCAAAGAGCTCAGAACA+AGG | 0.656538 | 4_1:-10414255 | None:intergenic |
| AGGAGATAGAATCTTATGGA+CGG | 0.657545 | 4_1:+10416108 | Msa0534790:three_prime_UTR |
| AGCATCTTTAAAGACAATGG+TGG | 0.682264 | 4_1:+10415285 | Msa0534790:CDS |
| ATTGATGAACTAAGGTGACA+TGG | 0.710947 | 4_1:-10415369 | None:intergenic |
| TTATAGCACAAGAATCCTGG+AGG | 0.713575 | 4_1:+10415721 | Msa0534790:intron |
| GCGCAGAAGCAGTAACAGTG+TGG | 0.726110 | 4_1:-10412244 | None:intergenic |
| TCTGTGCGATCTGAAGTGAG+TGG | 0.794018 | 4_1:+10414798 | Msa0534790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATATTAAAATATAATA+TGG | + | chr4_1:10414918-10414937 | Msa0534790:intron | 0.0% |
| !!! | TTTTTTAAAAGATAAATACA+AGG | - | chr4_1:10413458-10413477 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTATGTGTTTTTT+TGG | + | chr4_1:10414895-10414914 | Msa0534790:intron | 10.0% |
| !!! | AATTAAAGAATTTTTTCTAT+AGG | - | chr4_1:10415192-10415211 | None:intergenic | 10.0% |
| !! | TAATAAAAAGTAGTAGAATT+AGG | + | chr4_1:10412456-10412475 | Msa0534790:intron | 15.0% |
| !! | AATAAAAAGTAGTAGAATTA+GGG | + | chr4_1:10412457-10412476 | Msa0534790:intron | 15.0% |
| !! | AATTAAAATTACAATGTGAT+TGG | - | chr4_1:10412795-10412814 | None:intergenic | 15.0% |
| !! | AACAAAAACATATAAAGATT+TGG | - | chr4_1:10413218-10413237 | None:intergenic | 15.0% |
| !!! | GTATTTTTCAAACTATTTTA+AGG | - | chr4_1:10413989-10414008 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTTTCTCATTTTA+TGG | + | chr4_1:10414089-10414108 | Msa0534790:intron | 15.0% |
| !!! | TTTTGTTGAAATATTTTCAA+AGG | + | chr4_1:10414186-10414205 | Msa0534790:intron | 15.0% |
| !! | CATAAAAAAAAAAAAAACAG+AGG | - | chr4_1:10414887-10414906 | None:intergenic | 15.0% |
| !! | CTTAACCAATTATATTTAAT+GGG | - | chr4_1:10415063-10415082 | None:intergenic | 15.0% |
| !!! | TATTTTTTTATATACTACTC+TGG | + | chr4_1:10415511-10415530 | Msa0534790:intron | 15.0% |
| !! | TCAAATAAAATTGATGTATA+TGG | + | chr4_1:10415557-10415576 | Msa0534790:intron | 15.0% |
| !! | AAATAAAAAATCAAACAAAG+TGG | - | chr4_1:10415606-10415625 | None:intergenic | 15.0% |
| !!! | AATTTCTTATGCATTTTGTA+TGG | + | chr4_1:10413000-10413019 | Msa0534790:intron | 20.0% |
| !! | TTAGTTGTTGTATCTAATAA+TGG | + | chr4_1:10413053-10413072 | Msa0534790:intron | 20.0% |
| !! | ATAAAGATTTGGATTTATTG+AGG | - | chr4_1:10413207-10413226 | None:intergenic | 20.0% |
| !! | AGTATAATTGAAACACAAAA+AGG | - | chr4_1:10413253-10413272 | None:intergenic | 20.0% |
| !! | TTTCCAAATTAAAACGTAAT+TGG | + | chr4_1:10414062-10414081 | Msa0534790:intron | 20.0% |
| !! | TTCCAAATTAAAACGTAATT+GGG | + | chr4_1:10414063-10414082 | Msa0534790:intron | 20.0% |
| !!! | TTTTATGGCCATTTTTTAAA+CGG | + | chr4_1:10414104-10414123 | Msa0534790:intron | 20.0% |
| !! | TAAAAACAAAACCATGAAAT+GGG | - | chr4_1:10414417-10414436 | None:intergenic | 20.0% |
| !! | ATAAAAACAAAACCATGAAA+TGG | - | chr4_1:10414418-10414437 | None:intergenic | 20.0% |
| !!! | ATTTGTTACATGATACAAAA+TGG | - | chr4_1:10414720-10414739 | None:intergenic | 20.0% |
| !! | CAATTCAAGAAAATGAAAAA+AGG | - | chr4_1:10414752-10414771 | None:intergenic | 20.0% |
| !! | TTTGACCCATTAAATATAAT+TGG | + | chr4_1:10415055-10415074 | Msa0534790:intron | 20.0% |
| !! | GCTTAACCAATTATATTTAA+TGG | - | chr4_1:10415064-10415083 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTACACTCACTT+TGG | - | chr4_1:10415457-10415476 | None:intergenic | 20.0% |
| !! | ATTACAACTCGTTATTCTTT+TGG | + | chr4_1:10412379-10412398 | Msa0534790:intron | 25.0% |
| ! | ATTTGATTACTCTTAGCATT+AGG | + | chr4_1:10412402-10412421 | Msa0534790:intron | 25.0% |
| ! | TTGAAAAAAACTTTGTAGTG+TGG | + | chr4_1:10412480-10412499 | Msa0534790:intron | 25.0% |
| ! | CTAAGTCAAAATTAAACCAA+TGG | - | chr4_1:10412558-10412577 | None:intergenic | 25.0% |
| !!! | CATTGGTTTAATTTTGACTT+AGG | + | chr4_1:10412556-10412575 | Msa0534790:intron | 25.0% |
| ! | ACAATGTGATTATCAAAATG+TGG | - | chr4_1:10412968-10412987 | None:intergenic | 25.0% |
| !!! | TGTTGTATCTAATAATGGAT+TGG | + | chr4_1:10413058-10413077 | Msa0534790:intron | 25.0% |
| !!! | GTTGTATCTAATAATGGATT+GGG | + | chr4_1:10413059-10413078 | Msa0534790:intron | 25.0% |
| ! | TGCACATTAAAAGGAAAAAA+TGG | - | chr4_1:10413390-10413409 | None:intergenic | 25.0% |
| !!! | ATACGTTTTGATTTTATCAC+TGG | + | chr4_1:10413509-10413528 | Msa0534790:intron | 25.0% |
| ! | AAGTGTCAATTTGAATCAAA+TGG | - | chr4_1:10413640-10413659 | None:intergenic | 25.0% |
| !!! | CTATTTTGTTTTAGTCCTTT+GGG | - | chr4_1:10413794-10413813 | None:intergenic | 25.0% |
| !!! | CTATTTTAAGGCAGAAAATA+GGG | - | chr4_1:10413977-10413996 | None:intergenic | 25.0% |
| !!! | ACTATTTTAAGGCAGAAAAT+AGG | - | chr4_1:10413978-10413997 | None:intergenic | 25.0% |
| ! | ATTAACCACCGTTTAAAAAA+TGG | - | chr4_1:10414115-10414134 | None:intergenic | 25.0% |
| !! | TATTTTCAAAGGAGTAAGAA+TGG | + | chr4_1:10414197-10414216 | Msa0534790:intron | 25.0% |
| ! | GAAGGAAAAAATAAGCAAAA+GGG | + | chr4_1:10414219-10414238 | Msa0534790:CDS | 25.0% |
| !!! | AGAAAAAGCATTATTACCTT+AGG | - | chr4_1:10414345-10414364 | None:intergenic | 25.0% |
| ! | AAAAACAAAACCATGAAATG+GGG | - | chr4_1:10414416-10414435 | None:intergenic | 25.0% |
| ! | TAAATTCAATAACCAGATGA+AGG | - | chr4_1:10414670-10414689 | None:intergenic | 25.0% |
| !!! | ATTGTGTTGATTCAGATTTT+AGG | + | chr4_1:10414768-10414787 | Msa0534790:intron | 25.0% |
| !!! | TTGTGTTGATTCAGATTTTA+GGG | + | chr4_1:10414769-10414788 | Msa0534790:intron | 25.0% |
| !! | AGTAACAGCATATTTCATTT+TGG | + | chr4_1:10414950-10414969 | Msa0534790:intron | 25.0% |
| ! | TGTACATAATGTTCCATATA+TGG | - | chr4_1:10415091-10415110 | None:intergenic | 25.0% |
| !!! | ATTGTTTTACCTAAATCTCT+AGG | + | chr4_1:10415143-10415162 | Msa0534790:intron | 25.0% |
| ! | TCTGTATTTACATGAGAAAA+AGG | - | chr4_1:10415264-10415283 | None:intergenic | 25.0% |
| !! | TGATATGAGTTTTCTCTATA+AGG | + | chr4_1:10415332-10415351 | Msa0534790:CDS | 25.0% |
| !! | GATATGAGTTTTCTCTATAA+GGG | + | chr4_1:10415333-10415352 | Msa0534790:CDS | 25.0% |
| ! | CATAATAGATTGATGAACTA+AGG | - | chr4_1:10415380-10415399 | None:intergenic | 25.0% |
| ! | CTTAGTTCATCAATCTATTA+TGG | + | chr4_1:10415378-10415397 | Msa0534790:CDS | 25.0% |
| ! | TCAAACAAAGTGGATATATT+TGG | - | chr4_1:10415596-10415615 | None:intergenic | 25.0% |
| ! | TGTACATATAATAATCCTTC+TGG | - | chr4_1:10415650-10415669 | None:intergenic | 25.0% |
| ! | GAAGGATTATTATATGTACA+TGG | + | chr4_1:10415650-10415669 | Msa0534790:intron | 25.0% |
| !! | CTTGTCTAATTAGATTTTTG+TGG | + | chr4_1:10415812-10415831 | Msa0534790:intron | 25.0% |
| ! | ATATTATGAAACCTATATCC+AGG | + | chr4_1:10415968-10415987 | Msa0534790:intron | 25.0% |
| !! | ATTACTTTAATTGTTGTTGC+AGG | + | chr4_1:10416042-10416061 | Msa0534790:intron | 25.0% |
| ! | TTATAGTCAATCTAGTTACA+TGG | + | chr4_1:10416074-10416093 | Msa0534790:CDS | 25.0% |
| ! | TTATAGATGATTCCTATGTT+TGG | - | chr4_1:10416151-10416170 | None:intergenic | 25.0% |
| ACACAAAAACTCAATTCAAC+AGG | - | chr4_1:10412206-10412225 | None:intergenic | 30.0% | |
| ! | GCACTGTAGAAAATATTTTG+CGG | + | chr4_1:10412426-10412445 | Msa0534790:intron | 30.0% |
| !!! | GTTTTTTATTTCCTGACCAT+TGG | + | chr4_1:10412539-10412558 | Msa0534790:intron | 30.0% |
| TCAAAATTAAACCAATGGTC+AGG | - | chr4_1:10412553-10412572 | None:intergenic | 30.0% | |
| TGATTAGATCACAAATAAGC+TGG | + | chr4_1:10412704-10412723 | Msa0534790:intron | 30.0% | |
| TTACCTTGAAAACTTTGTTC+AGG | + | chr4_1:10413118-10413137 | Msa0534790:five_prime_UTR | 30.0% | |
| CTAACTGAAGAAAAAGTTAG+AGG | + | chr4_1:10413155-10413174 | Msa0534790:five_prime_UTR | 30.0% | |
| GTTTCAATTATACTGCAATG+TGG | + | chr4_1:10413259-10413278 | Msa0534790:intron | 30.0% | |
| !!! | ACATCATCCATTTTGAAGTA+TGG | + | chr4_1:10413587-10413606 | Msa0534790:intron | 30.0% |
| !!! | CATCATCCATTTTGAAGTAT+GGG | + | chr4_1:10413588-10413607 | Msa0534790:intron | 30.0% |
| !!! | ATCATCCATTTTGAAGTATG+GGG | + | chr4_1:10413589-10413608 | Msa0534790:intron | 30.0% |
| !! | GATCGTTGATTTGAGATTAA+CGG | - | chr4_1:10413701-10413720 | None:intergenic | 30.0% |
| !!! | GCTATTTTGTTTTAGTCCTT+TGG | - | chr4_1:10413795-10413814 | None:intergenic | 30.0% |
| CTAAAACAAAATAGCACATG+TGG | + | chr4_1:10413800-10413819 | Msa0534790:intron | 30.0% | |
| TGGAAAGAAACAAAATGAGT+AGG | - | chr4_1:10414048-10414067 | None:intergenic | 30.0% | |
| !!! | AGCCCAATTACGTTTTAATT+TGG | - | chr4_1:10414068-10414087 | None:intergenic | 30.0% |
| GGAAGGAAAAAATAAGCAAA+AGG | + | chr4_1:10414218-10414237 | Msa0534790:CDS | 30.0% | |
| !! | TCTTCTTCTTCTGGAATTTA+TGG | + | chr4_1:10414297-10414316 | Msa0534790:CDS | 30.0% |
| AGGTGATTGAGTAGAAAAAA+TGG | - | chr4_1:10414325-10414344 | None:intergenic | 30.0% | |
| ! | TTTTTCTACTCAATCACCTA+AGG | + | chr4_1:10414326-10414345 | Msa0534790:CDS | 30.0% |
| ! | TTTTATTCAACCCCATTTCA+TGG | + | chr4_1:10414403-10414422 | Msa0534790:intron | 30.0% |
| AATAACCAGATGAAGGAAAT+AGG | - | chr4_1:10414663-10414682 | None:intergenic | 30.0% | |
| ! | TGGTTAAGCTTTTCCATATA+TGG | + | chr4_1:10415075-10415094 | Msa0534790:intron | 30.0% |
| TACATTGTACCTAGAGATTT+AGG | - | chr4_1:10415155-10415174 | None:intergenic | 30.0% | |
| ! | GATAGCATCTTTAAAGACAA+TGG | + | chr4_1:10415282-10415301 | Msa0534790:intron | 30.0% |
| AGTTCATCAATCTATTATGG+TGG | + | chr4_1:10415381-10415400 | Msa0534790:CDS | 30.0% | |
| ! | TGTTTATATTTGAGACCAGA+AGG | + | chr4_1:10415632-10415651 | Msa0534790:intron | 30.0% |
| AAAGAGGAGATAGAATCTTA+TGG | + | chr4_1:10416104-10416123 | Msa0534790:exon | 30.0% | |
| AAAAACAGAGGCAAACTAGT+AGG | - | chr4_1:10412525-10412544 | None:intergenic | 35.0% | |
| GGTCAGGAAATAAAAAACAG+AGG | - | chr4_1:10412537-10412556 | None:intergenic | 35.0% | |
| !! | GTATCTAATAATGGATTGGG+TGG | + | chr4_1:10413062-10413081 | Msa0534790:intron | 35.0% |
| ! | ATGCCTGAACAAAGTTTTCA+AGG | - | chr4_1:10413124-10413143 | None:intergenic | 35.0% |
| ACTGTACTTTCCATATCTGT+AGG | + | chr4_1:10413291-10413310 | Msa0534790:intron | 35.0% | |
| ! | GCAAAGAAGTGCACATTAAA+AGG | - | chr4_1:10413399-10413418 | None:intergenic | 35.0% |
| AAATGGATGATGTATCGTCA+GGG | - | chr4_1:10413580-10413599 | None:intergenic | 35.0% | |
| AAAATGGATGATGTATCGTC+AGG | - | chr4_1:10413581-10413600 | None:intergenic | 35.0% | |
| !!! | TCATCCATTTTGAAGTATGG+GGG | + | chr4_1:10413590-10413609 | Msa0534790:intron | 35.0% |
| !!! | TTGTTTTAGTCCTTTGGGTA+GGG | - | chr4_1:10413789-10413808 | None:intergenic | 35.0% |
| !!! | TTTGTTTTAGTCCTTTGGGT+AGG | - | chr4_1:10413790-10413809 | None:intergenic | 35.0% |
| ! | AAGTACTGCAAGAAAGATAC+AGG | + | chr4_1:10413916-10413935 | Msa0534790:intron | 35.0% |
| AAATAGGGTAAGTAAGTGCT+TGG | - | chr4_1:10413962-10413981 | None:intergenic | 35.0% | |
| !!! | TATGGCCATTTTTTAAACGG+TGG | + | chr4_1:10414107-10414126 | Msa0534790:intron | 35.0% |
| TTCAAAGGAGTAAGAATGGA+AGG | + | chr4_1:10414201-10414220 | Msa0534790:intron | 35.0% | |
| ! | ACGTGTTAGTTTCGTGTAAA+TGG | + | chr4_1:10414613-10414632 | Msa0534790:intron | 35.0% |
| TTCAACCTATTTCCTTCATC+TGG | + | chr4_1:10414655-10414674 | Msa0534790:intron | 35.0% | |
| AACACCAAAACTGTTACTCA+AGG | + | chr4_1:10414843-10414862 | Msa0534790:CDS | 35.0% | |
| ! | AGTACCTTGAGTAACAGTTT+TGG | - | chr4_1:10414850-10414869 | None:intergenic | 35.0% |
| ! | AGCATCTTTAAAGACAATGG+TGG | + | chr4_1:10415285-10415304 | Msa0534790:CDS | 35.0% |
| ATTGATGAACTAAGGTGACA+TGG | - | chr4_1:10415372-10415391 | None:intergenic | 35.0% | |
| !!! | TTTTGAGTACTTTGAGGTTG+AGG | - | chr4_1:10415420-10415439 | None:intergenic | 35.0% |
| AACTTATAGCACAAGAATCC+TGG | + | chr4_1:10415718-10415737 | Msa0534790:intron | 35.0% | |
| AGGAGAAGATGATTCTCAAA+TGG | + | chr4_1:10415741-10415760 | Msa0534790:CDS | 35.0% | |
| ATTCTCAAATGGCTACAAGA+GGG | + | chr4_1:10415752-10415771 | Msa0534790:CDS | 35.0% | |
| !! | CTTGTTATCTTTTGATCCAC+AGG | + | chr4_1:10415883-10415902 | Msa0534790:intron | 35.0% |
| TCAATAATAGAGACTTCCTG+TGG | - | chr4_1:10415902-10415921 | None:intergenic | 35.0% | |
| AAATCATCCTTGTCAACTCT+AGG | + | chr4_1:10415921-10415940 | Msa0534790:CDS | 35.0% | |
| TATATGTGTCACCTGGATAT+AGG | - | chr4_1:10415982-10416001 | None:intergenic | 35.0% | |
| CATGAAATATATGTGTCACC+TGG | - | chr4_1:10415989-10416008 | None:intergenic | 35.0% | |
| ! | TAATTGTTGTTGCAGGTACA+TGG | + | chr4_1:10416049-10416068 | Msa0534790:intron | 35.0% |
| GTTACATGGATGAACTAAAG+AGG | + | chr4_1:10416088-10416107 | Msa0534790:exon | 35.0% | |
| AGGAGATAGAATCTTATGGA+CGG | + | chr4_1:10416108-10416127 | Msa0534790:three_prime_UTR | 35.0% | |
| CTTATCAATCCGATCTGTTC+TGG | + | chr4_1:10412638-10412657 | Msa0534790:intron | 40.0% | |
| CAACATGATCCAGAACAGAT+CGG | - | chr4_1:10412650-10412669 | None:intergenic | 40.0% | |
| !!! | TGGATTGGGTGGATTTTTTC+AGG | + | chr4_1:10413073-10413092 | Msa0534790:intron | 40.0% |
| TAGTGTTGCACCTACAGATA+TGG | - | chr4_1:10413304-10413323 | None:intergenic | 40.0% | |
| ACACTAGTTGTATCTGGTGA+TGG | + | chr4_1:10413318-10413337 | Msa0534790:five_prime_UTR | 40.0% | |
| !! | TGGTGATGGTCGTTATTACT+CGG | + | chr4_1:10413332-10413351 | Msa0534790:five_prime_UTR | 40.0% |
| TTACTCGGAGCAAGAAATTC+AGG | + | chr4_1:10413347-10413366 | Msa0534790:five_prime_UTR | 40.0% | |
| AGAAGGATCACAATTGCATG+CGG | - | chr4_1:10413760-10413779 | None:intergenic | 40.0% | |
| GCAATTGTGATCCTTCTTCT+AGG | + | chr4_1:10413763-10413782 | Msa0534790:intron | 40.0% | |
| ! | ACGGTGGTTAATGCACTTTT+TGG | + | chr4_1:10414123-10414142 | Msa0534790:intron | 40.0% |
| !! | CGGTGGTTAATGCACTTTTT+GGG | + | chr4_1:10414124-10414143 | Msa0534790:intron | 40.0% |
| !! | GGTGGTTAATGCACTTTTTG+GGG | + | chr4_1:10414125-10414144 | Msa0534790:intron | 40.0% |
| CACTCATCTTCTTCTTCTTC+TGG | + | chr4_1:10414288-10414307 | Msa0534790:CDS | 40.0% | |
| TCGCTTTCGGACATTAATGT+TGG | - | chr4_1:10414518-10414537 | None:intergenic | 40.0% | |
| TTAGACAGCAAACTCGCTTT+CGG | - | chr4_1:10414531-10414550 | None:intergenic | 40.0% | |
| !! | GTTTGCTGTCTAACATGTGT+CGG | + | chr4_1:10414538-10414557 | Msa0534790:intron | 40.0% |
| GAGGTTGAGGATATATGTCT+TGG | - | chr4_1:10415407-10415426 | None:intergenic | 40.0% | |
| !! | GCAGCATTTTGAGTACTTTG+AGG | - | chr4_1:10415426-10415445 | None:intergenic | 40.0% |
| TTATAGCACAAGAATCCTGG+AGG | + | chr4_1:10415721-10415740 | Msa0534790:intron | 40.0% | |
| GATTCTCAAATGGCTACAAG+AGG | + | chr4_1:10415751-10415770 | Msa0534790:CDS | 40.0% | |
| TTCTCAAATGGCTACAAGAG+GGG | + | chr4_1:10415753-10415772 | Msa0534790:CDS | 40.0% | |
| TGTGTTTGCAAGCCAAACAT+AGG | + | chr4_1:10416136-10416155 | Msa0534790:three_prime_UTR | 40.0% | |
| GAAGCAGTAACAGTGTGGTA+AGG | - | chr4_1:10412242-10412261 | None:intergenic | 45.0% | |
| ! | AACTACGCTTGGCTTTCTGA+AGG | + | chr4_1:10412299-10412318 | Msa0534790:five_prime_UTR | 45.0% |
| TGTGGTGTGTTCGTTCTCTT+TGG | + | chr4_1:10412498-10412517 | Msa0534790:intron | 45.0% | |
| GTGGTGTGTTCGTTCTCTTT+GGG | + | chr4_1:10412499-10412518 | Msa0534790:intron | 45.0% | |
| TTAGGTAGCTAAGCGTCTCT+AGG | + | chr4_1:10412574-10412593 | Msa0534790:intron | 45.0% | |
| GGTGCAACACTAGTTGTATC+TGG | + | chr4_1:10413312-10413331 | Msa0534790:intron | 45.0% | |
| GAAGCCCCCATACTTCAAAA+TGG | - | chr4_1:10413597-10413616 | None:intergenic | 45.0% | |
| TTGAAGTATGGGGGCTTCAT+AGG | + | chr4_1:10413599-10413618 | Msa0534790:intron | 45.0% | |
| ATCACAATTGCATGCGGTCA+AGG | - | chr4_1:10413754-10413773 | None:intergenic | 45.0% | |
| ! | TCACCTTGTTCTGAGCTCTT+TGG | + | chr4_1:10414252-10414271 | Msa0534790:CDS | 45.0% |
| ! | CACCTTGTTCTGAGCTCTTT+GGG | + | chr4_1:10414253-10414272 | Msa0534790:CDS | 45.0% |
| TGAGAATCATCTTCTCCTCC+AGG | - | chr4_1:10415739-10415758 | None:intergenic | 45.0% | |
| GCATATGCCTAGAGTTGACA+AGG | - | chr4_1:10415931-10415950 | None:intergenic | 45.0% | |
| CTCTAGGCATATGCTTCATC+AGG | + | chr4_1:10415937-10415956 | Msa0534790:CDS | 45.0% | |
| !! | AATAGTTATTAATTATTATT+TGG | - | chr4_1:10414985-10415004 | None:intergenic | 5.0% |
| AGCGTAGTTGCGGCTTGAAA+GGG | - | chr4_1:10412288-10412307 | None:intergenic | 50.0% | |
| AAGCGTAGTTGCGGCTTGAA+AGG | - | chr4_1:10412289-10412308 | None:intergenic | 50.0% | |
| TTTCAAGCCGCAACTACGCT+TGG | + | chr4_1:10412288-10412307 | Msa0534790:five_prime_UTR | 50.0% | |
| CAGAAAGCCAAGCGTAGTTG+CGG | - | chr4_1:10412298-10412317 | None:intergenic | 50.0% | |
| !! | TCGGCTCTGGGAATGAAAAG+AGG | - | chr4_1:10413535-10413554 | None:intergenic | 50.0% |
| TTTGGGTAGGGCCTAGAAGA+AGG | - | chr4_1:10413777-10413796 | None:intergenic | 50.0% | |
| TTCTTCTAGGCCCTACCCAA+AGG | + | chr4_1:10413776-10413795 | Msa0534790:intron | 50.0% | |
| GACCCAAAGAGCTCAGAACA+AGG | - | chr4_1:10414258-10414277 | None:intergenic | 50.0% | |
| ! | TCTGTGCGATCTGAAGTGAG+TGG | + | chr4_1:10414798-10414817 | Msa0534790:CDS | 50.0% |
| AAATGGCTACAAGAGGGGAC+TGG | + | chr4_1:10415758-10415777 | Msa0534790:CDS | 50.0% | |
| GCGCAGAAGCAGTAACAGTG+TGG | - | chr4_1:10412247-10412266 | None:intergenic | 55.0% | |
| TCCCTGAGAATTCGGAGGCT+CGG | - | chr4_1:10413554-10413573 | None:intergenic | 55.0% | |
| AGCCTCCGAATTCTCAGGGA+CGG | + | chr4_1:10413554-10413573 | Msa0534790:intron | 55.0% | |
| GAATTCGGAGGCTCGGCTCT+GGG | - | chr4_1:10413547-10413566 | None:intergenic | 60.0% | |
| AGAATTCGGAGGCTCGGCTC+TGG | - | chr4_1:10413548-10413567 | None:intergenic | 60.0% | |
| AGCCGAGCCTCCGAATTCTC+AGG | + | chr4_1:10413549-10413568 | Msa0534790:intron | 60.0% | |
| GCCGAGCCTCCGAATTCTCA+GGG | + | chr4_1:10413550-10413569 | Msa0534790:intron | 60.0% | |
| CAGGGCCGTCCCTGAGAATT+CGG | - | chr4_1:10413562-10413581 | None:intergenic | 60.0% | |
| TGGCTACAAGAGGGGACTGG+TGG | + | chr4_1:10415761-10415780 | Msa0534790:CDS | 60.0% | |
| ! | TACAAGAGGGGACTGGTGGC+AGG | + | chr4_1:10415765-10415784 | Msa0534790:CDS | 60.0% |
| ! | ACAAGAGGGGACTGGTGGCA+GGG | + | chr4_1:10415766-10415785 | Msa0534790:CDS | 60.0% |
| GGCCGTCCCTGAGAATTCGG+AGG | - | chr4_1:10413559-10413578 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 10412201 | 10416186 | 10412201 | ID=Msa0534790;Name=Msa0534790 |
| chr4_1 | mRNA | 10412201 | 10416186 | 10412201 | ID=Msa0534790-mRNA-1;Parent=Msa0534790;Name=Msa0534790-mRNA-1;_AED=0.12;_eAED=0.12;_QI=266|0.87|0.88|1|0.75|0.88|9|81|185 |
| chr4_1 | exon | 10412201 | 10412320 | 10412201 | ID=Msa0534790-mRNA-1:exon:3352;Parent=Msa0534790-mRNA-1 |
| chr4_1 | exon | 10413095 | 10413176 | 10413095 | ID=Msa0534790-mRNA-1:exon:3353;Parent=Msa0534790-mRNA-1 |
| chr4_1 | exon | 10413313 | 10413368 | 10413313 | ID=Msa0534790-mRNA-1:exon:3354;Parent=Msa0534790-mRNA-1 |
| chr4_1 | exon | 10414208 | 10414347 | 10414208 | ID=Msa0534790-mRNA-1:exon:3355;Parent=Msa0534790-mRNA-1 |
| chr4_1 | exon | 10414783 | 10414864 | 10414783 | ID=Msa0534790-mRNA-1:exon:3356;Parent=Msa0534790-mRNA-1 |
| chr4_1 | exon | 10415283 | 10415458 | 10415283 | ID=Msa0534790-mRNA-1:exon:3357;Parent=Msa0534790-mRNA-1 |
| chr4_1 | exon | 10415727 | 10415798 | 10415727 | ID=Msa0534790-mRNA-1:exon:3358;Parent=Msa0534790-mRNA-1 |
| chr4_1 | exon | 10415905 | 10415958 | 10415905 | ID=Msa0534790-mRNA-1:exon:3359;Parent=Msa0534790-mRNA-1 |
| chr4_1 | exon | 10416064 | 10416186 | 10416064 | ID=Msa0534790-mRNA-1:exon:3360;Parent=Msa0534790-mRNA-1 |
| chr4_1 | five_prime_UTR | 10412201 | 10412320 | 10412201 | ID=Msa0534790-mRNA-1:five_prime_utr;Parent=Msa0534790-mRNA-1 |
| chr4_1 | five_prime_UTR | 10413095 | 10413176 | 10413095 | ID=Msa0534790-mRNA-1:five_prime_utr;Parent=Msa0534790-mRNA-1 |
| chr4_1 | five_prime_UTR | 10413313 | 10413368 | 10413313 | ID=Msa0534790-mRNA-1:five_prime_utr;Parent=Msa0534790-mRNA-1 |
| chr4_1 | five_prime_UTR | 10414208 | 10414215 | 10414208 | ID=Msa0534790-mRNA-1:five_prime_utr;Parent=Msa0534790-mRNA-1 |
| chr4_1 | CDS | 10414216 | 10414347 | 10414216 | ID=Msa0534790-mRNA-1:cds;Parent=Msa0534790-mRNA-1 |
| chr4_1 | CDS | 10414783 | 10414864 | 10414783 | ID=Msa0534790-mRNA-1:cds;Parent=Msa0534790-mRNA-1 |
| chr4_1 | CDS | 10415283 | 10415458 | 10415283 | ID=Msa0534790-mRNA-1:cds;Parent=Msa0534790-mRNA-1 |
| chr4_1 | CDS | 10415727 | 10415798 | 10415727 | ID=Msa0534790-mRNA-1:cds;Parent=Msa0534790-mRNA-1 |
| chr4_1 | CDS | 10415905 | 10415958 | 10415905 | ID=Msa0534790-mRNA-1:cds;Parent=Msa0534790-mRNA-1 |
| chr4_1 | CDS | 10416064 | 10416105 | 10416064 | ID=Msa0534790-mRNA-1:cds;Parent=Msa0534790-mRNA-1 |
| chr4_1 | three_prime_UTR | 10416106 | 10416186 | 10416106 | ID=Msa0534790-mRNA-1:three_prime_utr;Parent=Msa0534790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
