Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0669550 | XP_013454925.1 | 92.308 | 156 | 11 | 1 | 1 | 155 | 1 | 156 | 1.26e-95 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0669550 | A0A072UIR5 | 92.308 | 156 | 11 | 1 | 1 | 155 | 1 | 156 | 6.00e-96 | 283 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0631280 | Msa0669550 | 0.881104 | 3.165558e-70 | -8.615850e-47 |
| Msa0534790 | Msa0669550 | 0.853562 | 2.201328e-61 | -8.615850e-47 |
| Msa0590970 | Msa0669550 | 0.879577 | 1.112087e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0669550 | MtrunA17_Chr4g0008731 | 92.308 | 156 | 11 | 1 | 1 | 155 | 1 | 156 | 1.15e-99 | 283 |
| Msa0669550 | MtrunA17_Chr7g0240431 | 53.623 | 138 | 62 | 2 | 18 | 155 | 21 | 156 | 1.38e-46 | 149 |
| Msa0669550 | MtrunA17_Chr4g0008721 | 50.000 | 158 | 69 | 5 | 1 | 155 | 1 | 151 | 2.47e-38 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0669550 | AT5G02020.1 | 51.079 | 139 | 57 | 4 | 17 | 155 | 22 | 149 | 7.38e-33 | 114 |
| Msa0669550 | AT5G02020.2 | 50.000 | 118 | 50 | 4 | 17 | 133 | 22 | 131 | 2.29e-21 | 84.7 |
| Msa0669550 | AT2G39855.2 | 35.714 | 140 | 70 | 5 | 18 | 155 | 21 | 142 | 1.63e-14 | 67.0 |
| Msa0669550 | AT2G39855.4 | 35.714 | 140 | 70 | 5 | 18 | 155 | 21 | 142 | 1.63e-14 | 67.0 |
| Msa0669550 | AT5G59080.2 | 32.414 | 145 | 65 | 3 | 16 | 155 | 19 | 135 | 6.53e-13 | 62.8 |
| Msa0669550 | AT5G59080.1 | 32.414 | 145 | 65 | 3 | 16 | 155 | 19 | 135 | 6.53e-13 | 62.8 |
| Msa0669550 | AT2G39855.3 | 43.421 | 76 | 37 | 2 | 81 | 155 | 47 | 117 | 2.79e-11 | 58.2 |
| Msa0669550 | AT3G55646.1 | 30.952 | 126 | 69 | 2 | 30 | 155 | 39 | 146 | 3.63e-11 | 58.5 |
Find 30 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCTTCTGGAATTTA+TGG | 0.132630 | 4_4:+11383072 | Msa0669550:CDS |
| CACTCATCATCTTCTTCTTC+TGG | 0.222052 | 4_4:+11383063 | Msa0669550:CDS |
| TCACCTTGTTCTGAGCTCTT+TGG | 0.224503 | 4_4:+11383027 | Msa0669550:CDS |
| CACCTTGTTCTGAGCTCTTT+GGG | 0.234708 | 4_4:+11383028 | Msa0669550:CDS |
| CTTAGTTCATCAATCTATTA+TGG | 0.252777 | 4_4:+11384176 | Msa0669550:CDS |
| TACAAGAGGGGACTGGTGGC+AGG | 0.416058 | 4_4:+11384565 | Msa0669550:CDS |
| AGTACCTTGAGTAACAGTTT+TGG | 0.440213 | 4_4:-11383640 | None:intergenic |
| TGAGAATCATCTTCTCCTCC+AGG | 0.452654 | 4_4:-11384536 | None:intergenic |
| AACTTATAGCACAAGAATCC+TGG | 0.453042 | 4_4:+11384518 | Msa0669550:intron |
| TAATTGTTGTTGCAGGTACA+TGG | 0.466921 | 4_4:+11384895 | Msa0669550:intron |
| GAGGTTGAGGATATATGTCT+TGG | 0.479701 | 4_4:-11384202 | None:intergenic |
| CATAATAGATTGATGAACTA+AGG | 0.485902 | 4_4:-11384175 | None:intergenic |
| AGGAGAAGATGATTCTCAAA+TGG | 0.516330 | 4_4:+11384541 | Msa0669550:CDS |
| TTCAAAGGAGTAAGAATGGA+AGG | 0.520315 | 4_4:+11382976 | None:intergenic |
| ACAAGAGGGGACTGGTGGCA+GGG | 0.569843 | 4_4:+11384566 | Msa0669550:CDS |
| TTATAGTCAATCTAGTTACA+TGG | 0.576174 | 4_4:+11384920 | Msa0669550:CDS |
| GTTACATGGATGAACTAAAG+AGG | 0.581768 | 4_4:+11384934 | Msa0669550:CDS |
| GATAGCATCTTTAAAGACAA+TGG | 0.591645 | 4_4:+11384080 | Msa0669550:intron |
| AGTTCATCAATCTATTATGG+TGG | 0.597056 | 4_4:+11384179 | Msa0669550:CDS |
| AACACCAAAACTGTTACTCA+AGG | 0.603702 | 4_4:+11383636 | Msa0669550:CDS |
| AAATGGCTACAAGAGGGGAC+TGG | 0.608932 | 4_4:+11384558 | Msa0669550:CDS |
| GATTCTCAAATGGCTACAAG+AGG | 0.629539 | 4_4:+11384551 | Msa0669550:CDS |
| ATTCTCAAATGGCTACAAGA+GGG | 0.629920 | 4_4:+11384552 | Msa0669550:CDS |
| TGGCTACAAGAGGGGACTGG+TGG | 0.631380 | 4_4:+11384561 | Msa0669550:CDS |
| TTCTCAAATGGCTACAAGAG+GGG | 0.633626 | 4_4:+11384553 | Msa0669550:CDS |
| GACCCAAAGAGCTCAGAACA+AGG | 0.656538 | 4_4:-11383030 | None:intergenic |
| AGCATCTTTAAAGACAATGG+TGG | 0.682264 | 4_4:+11384083 | Msa0669550:CDS |
| ATTGATGAACTAAGGTGACA+TGG | 0.710947 | 4_4:-11384167 | None:intergenic |
| TTATAGCACAAGAATCCTGG+AGG | 0.713575 | 4_4:+11384521 | Msa0669550:intron |
| TCTGTGCGATCTGAAGTGAG+TGG | 0.794018 | 4_4:+11383591 | Msa0669550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATATTAAAATATAATA+TGG | + | chr4_4:11383716-11383735 | Msa0669550:intron | 0.0% |
| !! | TAATATATTAAAATATAATA+TGG | + | chr4_4:11383716-11383735 | Msa0669550:intron | 0.0% |
| !! | AAAAAAAAAAAAAAAAACAG+AGG | - | chr4_4:11383680-11383699 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTATGTGTTTTTT+TGG | + | chr4_4:11383693-11383712 | Msa0669550:intron | 10.0% |
| !!! | AATTAAAGAATTTTTTCTAT+AGG | - | chr4_4:11383990-11384009 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAAAACAG+AGG | - | chr4_4:11383680-11383699 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTATGTGTTTTTT+TGG | + | chr4_4:11383693-11383712 | Msa0669550:intron | 10.0% |
| !!! | AATTAAAGAATTTTTTCTAT+AGG | - | chr4_4:11383990-11384009 | None:intergenic | 10.0% |
| !! | CTTAACCAATTATATTTAAT+GGG | - | chr4_4:11383861-11383880 | None:intergenic | 15.0% |
| !!! | TATTTTTTTATATACTACTC+TGG | + | chr4_4:11384310-11384329 | Msa0669550:intron | 15.0% |
| !! | TCAAATAAAATTGATGTATA+TGG | + | chr4_4:11384356-11384375 | Msa0669550:intron | 15.0% |
| !! | AAATAAAAAATCAAACAAAG+TGG | - | chr4_4:11384405-11384424 | None:intergenic | 15.0% |
| !!! | TTAATCTCTAAAATAAACAT+AGG | + | chr4_4:11384856-11384875 | Msa0669550:intron | 15.0% |
| !! | CTTAACCAATTATATTTAAT+GGG | - | chr4_4:11383861-11383880 | None:intergenic | 15.0% |
| !!! | TATTTTTTTATATACTACTC+TGG | + | chr4_4:11384310-11384329 | Msa0669550:intron | 15.0% |
| !! | TCAAATAAAATTGATGTATA+TGG | + | chr4_4:11384356-11384375 | Msa0669550:intron | 15.0% |
| !! | AAATAAAAAATCAAACAAAG+TGG | - | chr4_4:11384405-11384424 | None:intergenic | 15.0% |
| !!! | TTAATCTCTAAAATAAACAT+AGG | + | chr4_4:11384856-11384875 | Msa0669550:intron | 15.0% |
| !!! | ATTTGTTACATGATACAAAA+TGG | - | chr4_4:11383496-11383515 | None:intergenic | 20.0% |
| !! | CAATTCAAGAAAATGAAAAA+AGG | - | chr4_4:11383545-11383564 | None:intergenic | 20.0% |
| !! | TTTGACCCATTAAATATAAT+TGG | + | chr4_4:11383853-11383872 | Msa0669550:intron | 20.0% |
| !! | GCTTAACCAATTATATTTAA+TGG | - | chr4_4:11383862-11383881 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTACACTCACTT+TGG | - | chr4_4:11384255-11384274 | None:intergenic | 20.0% |
| !!! | ATTTGTTACATGATACAAAA+TGG | - | chr4_4:11383496-11383515 | None:intergenic | 20.0% |
| !! | CAATTCAAGAAAATGAAAAA+AGG | - | chr4_4:11383545-11383564 | None:intergenic | 20.0% |
| !! | TTTGACCCATTAAATATAAT+TGG | + | chr4_4:11383853-11383872 | Msa0669550:intron | 20.0% |
| !! | GCTTAACCAATTATATTTAA+TGG | - | chr4_4:11383862-11383881 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTACACTCACTT+TGG | - | chr4_4:11384255-11384274 | None:intergenic | 20.0% |
| ! | GAAGGAAAAAATAAGCAAAA+GGG | + | chr4_4:11382994-11383013 | Msa0669550:CDS | 25.0% |
| !!! | AGAAAAAGCATTATTACCTT+AGG | - | chr4_4:11383120-11383139 | None:intergenic | 25.0% |
| !! | TTTTATTCAACCACATTTCA+TGG | + | chr4_4:11383178-11383197 | Msa0669550:intron | 25.0% |
| ! | AAAAACAAAACCATGAAATG+TGG | - | chr4_4:11383191-11383210 | None:intergenic | 25.0% |
| ! | TAAATTCAATAACCAGATGA+AGG | - | chr4_4:11383446-11383465 | None:intergenic | 25.0% |
| ! | TGTAACAAATTCATTGAACA+TGG | + | chr4_4:11383506-11383525 | Msa0669550:intron | 25.0% |
| !!! | ATTGTGTTGATTCAGATTTT+AGG | + | chr4_4:11383561-11383580 | Msa0669550:intron | 25.0% |
| !!! | TTGTGTTGATTCAGATTTTA+GGG | + | chr4_4:11383562-11383581 | Msa0669550:intron | 25.0% |
| !! | AGTAACAGCATATTTCATTT+TGG | + | chr4_4:11383748-11383767 | Msa0669550:intron | 25.0% |
| ! | TGTACATAATGTTCCATATA+TGG | - | chr4_4:11383889-11383908 | None:intergenic | 25.0% |
| !!! | ATTGTTTTACCTAAATCTCT+AGG | + | chr4_4:11383941-11383960 | Msa0669550:intron | 25.0% |
| ! | TCTGTATTTACATGAGAAAA+AGG | - | chr4_4:11384062-11384081 | None:intergenic | 25.0% |
| !! | TGATATGAGTTTTCTCTATA+AGG | + | chr4_4:11384130-11384149 | Msa0669550:CDS | 25.0% |
| !! | GATATGAGTTTTCTCTATAA+GGG | + | chr4_4:11384131-11384150 | Msa0669550:CDS | 25.0% |
| ! | CATAATAGATTGATGAACTA+AGG | - | chr4_4:11384178-11384197 | None:intergenic | 25.0% |
| ! | CTTAGTTCATCAATCTATTA+TGG | + | chr4_4:11384176-11384195 | Msa0669550:CDS | 25.0% |
| ! | TCAAACAAAGTGGATATATT+TGG | - | chr4_4:11384395-11384414 | None:intergenic | 25.0% |
| ! | TGTAAATATAATACTCCTTC+TGG | - | chr4_4:11384450-11384469 | None:intergenic | 25.0% |
| !!! | GAAGGAGTATTATATTTACA+TGG | + | chr4_4:11384450-11384469 | Msa0669550:intron | 25.0% |
| !! | CTTGTCTAATTAGATTTTTG+TGG | + | chr4_4:11384612-11384631 | Msa0669550:intron | 25.0% |
| ! | ATATTATGAAACCTATATCC+AGG | + | chr4_4:11384768-11384787 | Msa0669550:intron | 25.0% |
| !! | ATTACTTTAATTGTTGTTGC+AGG | + | chr4_4:11384888-11384907 | Msa0669550:intron | 25.0% |
| ! | TTATAGTCAATCTAGTTACA+TGG | + | chr4_4:11384920-11384939 | Msa0669550:CDS | 25.0% |
| ! | GAAGGAAAAAATAAGCAAAA+GGG | + | chr4_4:11382994-11383013 | Msa0669550:CDS | 25.0% |
| !!! | AGAAAAAGCATTATTACCTT+AGG | - | chr4_4:11383120-11383139 | None:intergenic | 25.0% |
| !! | TTTTATTCAACCACATTTCA+TGG | + | chr4_4:11383178-11383197 | Msa0669550:intron | 25.0% |
| ! | AAAAACAAAACCATGAAATG+TGG | - | chr4_4:11383191-11383210 | None:intergenic | 25.0% |
| ! | TAAATTCAATAACCAGATGA+AGG | - | chr4_4:11383446-11383465 | None:intergenic | 25.0% |
| ! | TGTAACAAATTCATTGAACA+TGG | + | chr4_4:11383506-11383525 | Msa0669550:intron | 25.0% |
| !!! | ATTGTGTTGATTCAGATTTT+AGG | + | chr4_4:11383561-11383580 | Msa0669550:intron | 25.0% |
| !!! | TTGTGTTGATTCAGATTTTA+GGG | + | chr4_4:11383562-11383581 | Msa0669550:intron | 25.0% |
| !! | AGTAACAGCATATTTCATTT+TGG | + | chr4_4:11383748-11383767 | Msa0669550:intron | 25.0% |
| ! | TGTACATAATGTTCCATATA+TGG | - | chr4_4:11383889-11383908 | None:intergenic | 25.0% |
| !!! | ATTGTTTTACCTAAATCTCT+AGG | + | chr4_4:11383941-11383960 | Msa0669550:intron | 25.0% |
| ! | TCTGTATTTACATGAGAAAA+AGG | - | chr4_4:11384062-11384081 | None:intergenic | 25.0% |
| !! | TGATATGAGTTTTCTCTATA+AGG | + | chr4_4:11384130-11384149 | Msa0669550:CDS | 25.0% |
| !! | GATATGAGTTTTCTCTATAA+GGG | + | chr4_4:11384131-11384150 | Msa0669550:CDS | 25.0% |
| ! | CATAATAGATTGATGAACTA+AGG | - | chr4_4:11384178-11384197 | None:intergenic | 25.0% |
| ! | CTTAGTTCATCAATCTATTA+TGG | + | chr4_4:11384176-11384195 | Msa0669550:CDS | 25.0% |
| ! | TCAAACAAAGTGGATATATT+TGG | - | chr4_4:11384395-11384414 | None:intergenic | 25.0% |
| ! | TGTAAATATAATACTCCTTC+TGG | - | chr4_4:11384450-11384469 | None:intergenic | 25.0% |
| !!! | GAAGGAGTATTATATTTACA+TGG | + | chr4_4:11384450-11384469 | Msa0669550:intron | 25.0% |
| !! | CTTGTCTAATTAGATTTTTG+TGG | + | chr4_4:11384612-11384631 | Msa0669550:intron | 25.0% |
| ! | ATATTATGAAACCTATATCC+AGG | + | chr4_4:11384768-11384787 | Msa0669550:intron | 25.0% |
| !! | ATTACTTTAATTGTTGTTGC+AGG | + | chr4_4:11384888-11384907 | Msa0669550:intron | 25.0% |
| ! | TTATAGTCAATCTAGTTACA+TGG | + | chr4_4:11384920-11384939 | Msa0669550:CDS | 25.0% |
| GGAAGGAAAAAATAAGCAAA+AGG | + | chr4_4:11382993-11383012 | Msa0669550:CDS | 30.0% | |
| !! | TCTTCTTCTTCTGGAATTTA+TGG | + | chr4_4:11383072-11383091 | Msa0669550:CDS | 30.0% |
| AGGTGATTGAGTAGAAAAAA+TGG | - | chr4_4:11383100-11383119 | None:intergenic | 30.0% | |
| ! | TTTTTCTACTCAATCACCTA+AGG | + | chr4_4:11383101-11383120 | Msa0669550:CDS | 30.0% |
| ATAACCAGATGAAGGAAATA+AGG | - | chr4_4:11383438-11383457 | None:intergenic | 30.0% | |
| ! | TGGTTAAGCTTTTCCATATA+TGG | + | chr4_4:11383873-11383892 | Msa0669550:intron | 30.0% |
| TACATTGTACCTAGAGATTT+AGG | - | chr4_4:11383953-11383972 | None:intergenic | 30.0% | |
| ! | GATAGCATCTTTAAAGACAA+TGG | + | chr4_4:11384080-11384099 | Msa0669550:intron | 30.0% |
| AGTTCATCAATCTATTATGG+TGG | + | chr4_4:11384179-11384198 | Msa0669550:CDS | 30.0% | |
| ! | TGTTTATATTTGAGACCAGA+AGG | + | chr4_4:11384432-11384451 | Msa0669550:intron | 30.0% |
| GGAAGGAAAAAATAAGCAAA+AGG | + | chr4_4:11382993-11383012 | Msa0669550:CDS | 30.0% | |
| !! | TCTTCTTCTTCTGGAATTTA+TGG | + | chr4_4:11383072-11383091 | Msa0669550:CDS | 30.0% |
| AGGTGATTGAGTAGAAAAAA+TGG | - | chr4_4:11383100-11383119 | None:intergenic | 30.0% | |
| ! | TTTTTCTACTCAATCACCTA+AGG | + | chr4_4:11383101-11383120 | Msa0669550:CDS | 30.0% |
| ATAACCAGATGAAGGAAATA+AGG | - | chr4_4:11383438-11383457 | None:intergenic | 30.0% | |
| ! | TGGTTAAGCTTTTCCATATA+TGG | + | chr4_4:11383873-11383892 | Msa0669550:intron | 30.0% |
| TACATTGTACCTAGAGATTT+AGG | - | chr4_4:11383953-11383972 | None:intergenic | 30.0% | |
| ! | GATAGCATCTTTAAAGACAA+TGG | + | chr4_4:11384080-11384099 | Msa0669550:intron | 30.0% |
| AGTTCATCAATCTATTATGG+TGG | + | chr4_4:11384179-11384198 | Msa0669550:CDS | 30.0% | |
| ! | TGTTTATATTTGAGACCAGA+AGG | + | chr4_4:11384432-11384451 | Msa0669550:intron | 30.0% |
| ! | ACGTGTTAGTTTCGTGTAAA+TGG | + | chr4_4:11383388-11383407 | Msa0669550:intron | 35.0% |
| ! | TCAACCTTATTTCCTTCATC+TGG | + | chr4_4:11383431-11383450 | Msa0669550:intron | 35.0% |
| AACACCAAAACTGTTACTCA+AGG | + | chr4_4:11383636-11383655 | Msa0669550:CDS | 35.0% | |
| ! | AGTACCTTGAGTAACAGTTT+TGG | - | chr4_4:11383643-11383662 | None:intergenic | 35.0% |
| ! | AGCATCTTTAAAGACAATGG+TGG | + | chr4_4:11384083-11384102 | Msa0669550:CDS | 35.0% |
| ATTGATGAACTAAGGTGACA+TGG | - | chr4_4:11384170-11384189 | None:intergenic | 35.0% | |
| !!! | TTTTGAGTACTTTGAGGTTG+AGG | - | chr4_4:11384218-11384237 | None:intergenic | 35.0% |
| CTACTCTGGTCTCAAATATA+AGG | + | chr4_4:11384324-11384343 | Msa0669550:intron | 35.0% | |
| AACTTATAGCACAAGAATCC+TGG | + | chr4_4:11384518-11384537 | Msa0669550:intron | 35.0% | |
| AGGAGAAGATGATTCTCAAA+TGG | + | chr4_4:11384541-11384560 | Msa0669550:CDS | 35.0% | |
| ATTCTCAAATGGCTACAAGA+GGG | + | chr4_4:11384552-11384571 | Msa0669550:CDS | 35.0% | |
| !! | CTTGTTATCTTTTGATCCAC+AGG | + | chr4_4:11384683-11384702 | Msa0669550:intron | 35.0% |
| TCAATAATAGAGACTTCCTG+TGG | - | chr4_4:11384702-11384721 | None:intergenic | 35.0% | |
| AAATCATCCTTGTCAACTCT+AGG | + | chr4_4:11384721-11384740 | Msa0669550:intron | 35.0% | |
| TATATGTGTCACCTGGATAT+AGG | - | chr4_4:11384782-11384801 | None:intergenic | 35.0% | |
| CATGAAATATATGTGTCACC+TGG | - | chr4_4:11384789-11384808 | None:intergenic | 35.0% | |
| ! | TAATTGTTGTTGCAGGTACA+TGG | + | chr4_4:11384895-11384914 | Msa0669550:intron | 35.0% |
| GTTACATGGATGAACTAAAG+AGG | + | chr4_4:11384934-11384953 | Msa0669550:CDS | 35.0% | |
| ! | ACGTGTTAGTTTCGTGTAAA+TGG | + | chr4_4:11383388-11383407 | Msa0669550:intron | 35.0% |
| ! | TCAACCTTATTTCCTTCATC+TGG | + | chr4_4:11383431-11383450 | Msa0669550:intron | 35.0% |
| AACACCAAAACTGTTACTCA+AGG | + | chr4_4:11383636-11383655 | Msa0669550:CDS | 35.0% | |
| ! | AGTACCTTGAGTAACAGTTT+TGG | - | chr4_4:11383643-11383662 | None:intergenic | 35.0% |
| ! | AGCATCTTTAAAGACAATGG+TGG | + | chr4_4:11384083-11384102 | Msa0669550:CDS | 35.0% |
| ATTGATGAACTAAGGTGACA+TGG | - | chr4_4:11384170-11384189 | None:intergenic | 35.0% | |
| !!! | TTTTGAGTACTTTGAGGTTG+AGG | - | chr4_4:11384218-11384237 | None:intergenic | 35.0% |
| CTACTCTGGTCTCAAATATA+AGG | + | chr4_4:11384324-11384343 | Msa0669550:intron | 35.0% | |
| AACTTATAGCACAAGAATCC+TGG | + | chr4_4:11384518-11384537 | Msa0669550:intron | 35.0% | |
| AGGAGAAGATGATTCTCAAA+TGG | + | chr4_4:11384541-11384560 | Msa0669550:CDS | 35.0% | |
| ATTCTCAAATGGCTACAAGA+GGG | + | chr4_4:11384552-11384571 | Msa0669550:CDS | 35.0% | |
| !! | CTTGTTATCTTTTGATCCAC+AGG | + | chr4_4:11384683-11384702 | Msa0669550:intron | 35.0% |
| TCAATAATAGAGACTTCCTG+TGG | - | chr4_4:11384702-11384721 | None:intergenic | 35.0% | |
| AAATCATCCTTGTCAACTCT+AGG | + | chr4_4:11384721-11384740 | Msa0669550:intron | 35.0% | |
| TATATGTGTCACCTGGATAT+AGG | - | chr4_4:11384782-11384801 | None:intergenic | 35.0% | |
| CATGAAATATATGTGTCACC+TGG | - | chr4_4:11384789-11384808 | None:intergenic | 35.0% | |
| ! | TAATTGTTGTTGCAGGTACA+TGG | + | chr4_4:11384895-11384914 | Msa0669550:intron | 35.0% |
| GTTACATGGATGAACTAAAG+AGG | + | chr4_4:11384934-11384953 | Msa0669550:CDS | 35.0% | |
| CACTCATCATCTTCTTCTTC+TGG | + | chr4_4:11383063-11383082 | Msa0669550:CDS | 40.0% | |
| TCGCTTTCGGACATTAATGT+TGG | - | chr4_4:11383293-11383312 | None:intergenic | 40.0% | |
| GAGGTTGAGGATATATGTCT+TGG | - | chr4_4:11384205-11384224 | None:intergenic | 40.0% | |
| !! | GCAGCATTTTGAGTACTTTG+AGG | - | chr4_4:11384224-11384243 | None:intergenic | 40.0% |
| TTATAGCACAAGAATCCTGG+AGG | + | chr4_4:11384521-11384540 | Msa0669550:intron | 40.0% | |
| GATTCTCAAATGGCTACAAG+AGG | + | chr4_4:11384551-11384570 | Msa0669550:CDS | 40.0% | |
| TTCTCAAATGGCTACAAGAG+GGG | + | chr4_4:11384553-11384572 | Msa0669550:CDS | 40.0% | |
| CACTCATCATCTTCTTCTTC+TGG | + | chr4_4:11383063-11383082 | Msa0669550:CDS | 40.0% | |
| TCGCTTTCGGACATTAATGT+TGG | - | chr4_4:11383293-11383312 | None:intergenic | 40.0% | |
| GAGGTTGAGGATATATGTCT+TGG | - | chr4_4:11384205-11384224 | None:intergenic | 40.0% | |
| !! | GCAGCATTTTGAGTACTTTG+AGG | - | chr4_4:11384224-11384243 | None:intergenic | 40.0% |
| TTATAGCACAAGAATCCTGG+AGG | + | chr4_4:11384521-11384540 | Msa0669550:intron | 40.0% | |
| GATTCTCAAATGGCTACAAG+AGG | + | chr4_4:11384551-11384570 | Msa0669550:CDS | 40.0% | |
| TTCTCAAATGGCTACAAGAG+GGG | + | chr4_4:11384553-11384572 | Msa0669550:CDS | 40.0% | |
| ! | TCACCTTGTTCTGAGCTCTT+TGG | + | chr4_4:11383027-11383046 | Msa0669550:CDS | 45.0% |
| ! | CACCTTGTTCTGAGCTCTTT+GGG | + | chr4_4:11383028-11383047 | Msa0669550:CDS | 45.0% |
| TGAGACAGCAAACTCGCTTT+CGG | - | chr4_4:11383306-11383325 | None:intergenic | 45.0% | |
| !! | GTTTGCTGTCTCACATGTGT+CGG | + | chr4_4:11383313-11383332 | Msa0669550:intron | 45.0% |
| TGAGAATCATCTTCTCCTCC+AGG | - | chr4_4:11384539-11384558 | None:intergenic | 45.0% | |
| GCATATGCCTAGAGTTGACA+AGG | - | chr4_4:11384731-11384750 | None:intergenic | 45.0% | |
| CTCTAGGCATATGCTTCATC+AGG | + | chr4_4:11384737-11384756 | Msa0669550:intron | 45.0% | |
| ! | TCACCTTGTTCTGAGCTCTT+TGG | + | chr4_4:11383027-11383046 | Msa0669550:CDS | 45.0% |
| ! | CACCTTGTTCTGAGCTCTTT+GGG | + | chr4_4:11383028-11383047 | Msa0669550:CDS | 45.0% |
| TGAGACAGCAAACTCGCTTT+CGG | - | chr4_4:11383306-11383325 | None:intergenic | 45.0% | |
| !! | GTTTGCTGTCTCACATGTGT+CGG | + | chr4_4:11383313-11383332 | Msa0669550:intron | 45.0% |
| TGAGAATCATCTTCTCCTCC+AGG | - | chr4_4:11384539-11384558 | None:intergenic | 45.0% | |
| GCATATGCCTAGAGTTGACA+AGG | - | chr4_4:11384731-11384750 | None:intergenic | 45.0% | |
| CTCTAGGCATATGCTTCATC+AGG | + | chr4_4:11384737-11384756 | Msa0669550:intron | 45.0% | |
| !! | AATAGTTATTAATTATTATT+TGG | - | chr4_4:11383783-11383802 | None:intergenic | 5.0% |
| !! | AATAGTTATTAATTATTATT+TGG | - | chr4_4:11383783-11383802 | None:intergenic | 5.0% |
| GACCCAAAGAGCTCAGAACA+AGG | - | chr4_4:11383033-11383052 | None:intergenic | 50.0% | |
| ! | TCTGTGCGATCTGAAGTGAG+TGG | + | chr4_4:11383591-11383610 | Msa0669550:CDS | 50.0% |
| AAATGGCTACAAGAGGGGAC+TGG | + | chr4_4:11384558-11384577 | Msa0669550:CDS | 50.0% | |
| GACCCAAAGAGCTCAGAACA+AGG | - | chr4_4:11383033-11383052 | None:intergenic | 50.0% | |
| ! | TCTGTGCGATCTGAAGTGAG+TGG | + | chr4_4:11383591-11383610 | Msa0669550:CDS | 50.0% |
| AAATGGCTACAAGAGGGGAC+TGG | + | chr4_4:11384558-11384577 | Msa0669550:CDS | 50.0% | |
| TGGCTACAAGAGGGGACTGG+TGG | + | chr4_4:11384561-11384580 | Msa0669550:CDS | 60.0% | |
| ! | TACAAGAGGGGACTGGTGGC+AGG | + | chr4_4:11384565-11384584 | Msa0669550:CDS | 60.0% |
| ! | ACAAGAGGGGACTGGTGGCA+GGG | + | chr4_4:11384566-11384585 | Msa0669550:CDS | 60.0% |
| TGGCTACAAGAGGGGACTGG+TGG | + | chr4_4:11384561-11384580 | Msa0669550:CDS | 60.0% | |
| ! | TACAAGAGGGGACTGGTGGC+AGG | + | chr4_4:11384565-11384584 | Msa0669550:CDS | 60.0% |
| ! | ACAAGAGGGGACTGGTGGCA+GGG | + | chr4_4:11384566-11384585 | Msa0669550:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 11382991 | 11384962 | 11382991 | ID=Msa0669550;Name=Msa0669550 |
| chr4_4 | mRNA | 11382991 | 11384962 | 11382991 | ID=Msa0669550-mRNA-1;Parent=Msa0669550;Name=Msa0669550-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.75|0.4|0.8|1|1|5|0|167 |
| chr4_4 | exon | 11382991 | 11383122 | 11382991 | ID=Msa0669550-mRNA-1:exon:3391;Parent=Msa0669550-mRNA-1 |
| chr4_4 | exon | 11383576 | 11383657 | 11383576 | ID=Msa0669550-mRNA-1:exon:3392;Parent=Msa0669550-mRNA-1 |
| chr4_4 | exon | 11384081 | 11384256 | 11384081 | ID=Msa0669550-mRNA-1:exon:3393;Parent=Msa0669550-mRNA-1 |
| chr4_4 | exon | 11384527 | 11384587 | 11384527 | ID=Msa0669550-mRNA-1:exon:3394;Parent=Msa0669550-mRNA-1 |
| chr4_4 | exon | 11384910 | 11384962 | 11384910 | ID=Msa0669550-mRNA-1:exon:3395;Parent=Msa0669550-mRNA-1 |
| chr4_4 | CDS | 11382991 | 11383122 | 11382991 | ID=Msa0669550-mRNA-1:cds;Parent=Msa0669550-mRNA-1 |
| chr4_4 | CDS | 11383576 | 11383657 | 11383576 | ID=Msa0669550-mRNA-1:cds;Parent=Msa0669550-mRNA-1 |
| chr4_4 | CDS | 11384081 | 11384256 | 11384081 | ID=Msa0669550-mRNA-1:cds;Parent=Msa0669550-mRNA-1 |
| chr4_4 | CDS | 11384527 | 11384587 | 11384527 | ID=Msa0669550-mRNA-1:cds;Parent=Msa0669550-mRNA-1 |
| chr4_4 | CDS | 11384910 | 11384962 | 11384910 | ID=Msa0669550-mRNA-1:cds;Parent=Msa0669550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
