AlfalfaGEDB | Msa0636800

M. sativa cultivar zhongmu-4 / Msa0636800

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0446950	Msa0636800	0.828529	8.545083e-55	-8.615850e-47
Msa0612000	Msa0636800	0.825989	3.470016e-54	-8.615850e-47
Msa0636800	Msa0820720	0.817764	2.784899e-52	-8.615850e-47
Msa0636800	Msa1297160	0.824195	9.204757e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 39 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCATCATGATAGGAAG+AGG	0.535692	4_3:+27815731	None:intergenic
AAATGTTCCTTCCCGTCCTT+AGG	0.450368	4_3:+27816304	None:intergenic
AACATATCCTAAGGACGGGA+AGG	0.619664	4_3:-27816311	Msa0636800:CDS
AAGAGGTGTGATGGCAGCAG+GGG	0.623171	4_3:+27815858	None:intergenic
ACATTCTGCAAGATGGTGGA+AGG	0.563972	4_3:+27815919	None:intergenic
ACCATCTTGCAGAATGTTGA+AGG	0.466797	4_3:-27815913	Msa0636800:CDS
ACTTGAACCAATCTTAGCAG+AGG	0.665354	4_3:+27815825	None:intergenic
AGTATGAGCAAGAGGTGTGA+TGG	0.566077	4_3:+27815849	None:intergenic
ATAGTAACATATCCTAAGGA+CGG	0.602531	4_3:-27816316	Msa0636800:CDS
ATCTTGCAGAATGTTGAAGG+AGG	0.669468	4_3:-27815910	Msa0636800:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTTGTGAGGAAACATAAT+TGG	+	chr4_3:27816363-27816382	None:intergenic	30.0%
ACATGCATCAACAAATCAAA+TGG	+	chr4_3:27816490-27816509	None:intergenic	30.0%
GATGCATGTTTGAAAGAATT+AGG	-	chr4_3:27816501-27816520	Msa0636800:intron	30.0%
CATACCTTTGTGAAGATAAA+AGG	+	chr4_3:27816796-27816815	None:intergenic	30.0%
ATAGTAACATATCCTAAGGA+CGG	-	chr4_3:27816981-27817000	Msa0636800:intron	30.0%
TCAAGGAAATAATCAGTTGT+AGG	+	chr4_3:27817063-27817082	None:intergenic	30.0%
TGTGTGTTTGTTTGCTTATT+AGG	-	chr4_3:27817103-27817122	Msa0636800:intron	30.0%
GTGTGTTTGTTTGCTTATTA+GGG	-	chr4_3:27817104-27817123	Msa0636800:intron	30.0%
AGATGACAATGCTATGATTT+AGG	-	chr4_3:27817172-27817191	Msa0636800:intron	30.0%
TTCTTGTGAGGAAACATAAT+TGG	+	chr4_3:27816363-27816382	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	27815738	27817581	27815738	ID=Msa0636800;Name=Msa0636800
chr4_3	mRNA	27815738	27817581	27815738	ID=Msa0636800-mRNA-1;Parent=Msa0636800;Name=Msa0636800-mRNA-1;_AED=0.44;_eAED=0.76;_QI=0\|0\|0\|0.8\|1\|1\|5\|0\|133
chr4_3	exon	27817553	27817581	27817553	ID=Msa0636800-mRNA-1:exon:6893;Parent=Msa0636800-mRNA-1
chr4_3	exon	27816509	27816569	27816509	ID=Msa0636800-mRNA-1:exon:6892;Parent=Msa0636800-mRNA-1
chr4_3	exon	27816279	27816338	27816279	ID=Msa0636800-mRNA-1:exon:6891;Parent=Msa0636800-mRNA-1
chr4_3	exon	27816087	27816125	27816087	ID=Msa0636800-mRNA-1:exon:6890;Parent=Msa0636800-mRNA-1
chr4_3	exon	27815738	27815950	27815738	ID=Msa0636800-mRNA-1:exon:6889;Parent=Msa0636800-mRNA-1
chr4_3	CDS	27817553	27817581	27817553	ID=Msa0636800-mRNA-1:cds;Parent=Msa0636800-mRNA-1
chr4_3	CDS	27816509	27816569	27816509	ID=Msa0636800-mRNA-1:cds;Parent=Msa0636800-mRNA-1
chr4_3	CDS	27816279	27816338	27816279	ID=Msa0636800-mRNA-1:cds;Parent=Msa0636800-mRNA-1
chr4_3	CDS	27816087	27816125	27816087	ID=Msa0636800-mRNA-1:cds;Parent=Msa0636800-mRNA-1
chr4_3	CDS	27815738	27815950	27815738	ID=Msa0636800-mRNA-1:cds;Parent=Msa0636800-mRNA-1

Gene Sequence

>Msa0636800

ATGGAAGAAGCACGAGAAAATAAAGGCGAAAAAATTGATGTCTTTGAACAACAAGTGCAGGTAAATGATACTCCTTTTATCTTCACAAAGATAGTAACATATCCTAAGGACGGGAAGGAACATTTGGAGATGGTCATTGTTGATGCTAAGGACACAAATGTGGAGAGTGATGATGTTACTATCTCAGTTATGCAAACCCCTTCCACCATCTTGCAGAATGTTGAAGGAGGCAAGAACTGGGACTCACTCAGCCAACTTACCCCTGCTGCCATCACACCTCTTGCTCATACTACCTCTGCTAAGATTGGTTCAAGTGCTACCCCTATCCACCCTATCATCCTGGATGAGATCACTCCTGCAAAAAACTCTTACTCTAAGATGGTTAACCTCTTCCTATCATGA

Protein sequence

>Msa0636800

MEEARENKGEKIDVFEQQVQVNDTPFIFTKIVTYPKDGKEHLEMVIVDAKDTNVESDDVTISVMQTPSTILQNVEGGKNWDSLSQLTPAAITPLAHTTSAKIGSSATPIHPIILDEITPAKNSYSKMVNLFLS*