Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0612000 | Msa0636800 | 0.825989 | 3.470016e-54 | -8.615850e-47 |
| Msa0636800 | Msa0820720 | 0.817764 | 2.784899e-52 | -8.615850e-47 |
| Msa0636800 | Msa1297160 | 0.824195 | 9.204757e-54 | -8.615850e-47 |
| Msa0446950 | Msa0636800 | 0.828529 | 8.545083e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACCTTTGTGAAGATAAA+AGG | 0.212182 | 4_3:+27816504 | None:intergenic |
| GTGATCTCATCCAGGATGAT+AGG | 0.356626 | 4_3:+27815787 | None:intergenic |
| CCAGGATGATAGGGTGGATA+GGG | 0.403549 | 4_3:+27815797 | None:intergenic |
| ATGTTGAAGGAGGCAAGAAC+TGG | 0.403774 | 4_3:-27815900 | Msa0636800:CDS |
| TAAGGACGGGAAGGAACATT+TGG | 0.428961 | 4_3:-27816302 | Msa0636800:CDS |
| TCTTATAAAATCATCATGAT+AGG | 0.434799 | 4_3:+27815725 | None:intergenic |
| GCAAGAGGTGTGATGGCAGC+AGG | 0.439246 | 4_3:+27815856 | None:intergenic |
| GAAGAAGCACGAGAAAATAA+AGG | 0.445989 | 4_3:-27817556 | Msa0636800:CDS |
| AAATGTTCCTTCCCGTCCTT+AGG | 0.450368 | 4_3:+27816304 | None:intergenic |
| TGATGGCAGCAGGGGTAAGT+TGG | 0.456592 | 4_3:+27815866 | None:intergenic |
| ACCATCTTGCAGAATGTTGA+AGG | 0.466797 | 4_3:-27815913 | Msa0636800:CDS |
| CATACTACCTCTGCTAAGAT+TGG | 0.469905 | 4_3:-27815832 | Msa0636800:CDS |
| CCCTATCCACCCTATCATCC+TGG | 0.477480 | 4_3:-27815797 | Msa0636800:CDS |
| TCCTTCAACATTCTGCAAGA+TGG | 0.497116 | 4_3:+27815912 | None:intergenic |
| TAAGATAGTAACATATCCTA+AGG | 0.501123 | 4_3:-27816320 | Msa0636800:intron |
| TTGCAGGAGTGATCTCATCC+AGG | 0.524797 | 4_3:+27815779 | None:intergenic |
| TGTCTTTGAACAACAAGTGC+AGG | 0.532648 | 4_3:-27816538 | Msa0636800:CDS |
| AAAATCATCATGATAGGAAG+AGG | 0.535692 | 4_3:+27815731 | None:intergenic |
| ATTCTGCAAGATGGTGGAAG+GGG | 0.542643 | 4_3:+27815921 | None:intergenic |
| TGATCTCATCCAGGATGATA+GGG | 0.550931 | 4_3:+27815788 | None:intergenic |
| TAGTAACATATCCTAAGGAC+GGG | 0.551671 | 4_3:-27816315 | Msa0636800:CDS |
| ACATTCTGCAAGATGGTGGA+AGG | 0.563972 | 4_3:+27815919 | None:intergenic |
| AGTATGAGCAAGAGGTGTGA+TGG | 0.566077 | 4_3:+27815849 | None:intergenic |
| TTCAACATTCTGCAAGATGG+TGG | 0.575396 | 4_3:+27815915 | None:intergenic |
| GATGGTCATTGTTGATGCTA+AGG | 0.581330 | 4_3:-27816278 | Msa0636800:intron |
| CATTCTGCAAGATGGTGGAA+GGG | 0.582124 | 4_3:+27815920 | None:intergenic |
| TCCAGGATGATAGGGTGGAT+AGG | 0.585429 | 4_3:+27815796 | None:intergenic |
| CAAGAGGTGTGATGGCAGCA+GGG | 0.589536 | 4_3:+27815857 | None:intergenic |
| GCAGAGGTAGTATGAGCAAG+AGG | 0.599567 | 4_3:+27815841 | None:intergenic |
| ATAGTAACATATCCTAAGGA+CGG | 0.602531 | 4_3:-27816316 | Msa0636800:CDS |
| CGGGAAGGAACATTTGGAGA+TGG | 0.612772 | 4_3:-27816296 | Msa0636800:CDS |
| TGTTGAAGGAGGCAAGAACT+GGG | 0.613431 | 4_3:-27815899 | Msa0636800:CDS |
| AACATATCCTAAGGACGGGA+AGG | 0.619664 | 4_3:-27816311 | Msa0636800:CDS |
| CAGGATGATAGGGTGGATAG+GGG | 0.620934 | 4_3:+27815798 | None:intergenic |
| AAGAGGTGTGATGGCAGCAG+GGG | 0.623171 | 4_3:+27815858 | None:intergenic |
| TCTCATCCAGGATGATAGGG+TGG | 0.663515 | 4_3:+27815791 | None:intergenic |
| ACTTGAACCAATCTTAGCAG+AGG | 0.665354 | 4_3:+27815825 | None:intergenic |
| ATCTTGCAGAATGTTGAAGG+AGG | 0.669468 | 4_3:-27815910 | Msa0636800:CDS |
| TATGATTTAGGACACAAATG+TGG | 0.703373 | 4_3:-27816113 | Msa0636800:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTATGTATAAAACAA+TGG | - | chr4_3:27816087-27816106 | Msa0636800:CDS | 10.0% |
| !!! | TACATAAAGATTTTTTTTAA+AGG | + | chr4_3:27816119-27816138 | None:intergenic | 10.0% |
| !! | TATATTAGATCTTAAAAAAT+TGG | + | chr4_3:27816207-27816226 | None:intergenic | 10.0% |
| !! | ATAGAAAAAAGATTATAATT+AGG | - | chr4_3:27816298-27816317 | Msa0636800:CDS | 10.0% |
| !!! | ATATTTTATGTATAAAACAA+TGG | - | chr4_3:27816087-27816106 | Msa0636800:CDS | 10.0% |
| !!! | TACATAAAGATTTTTTTTAA+AGG | + | chr4_3:27816119-27816138 | None:intergenic | 10.0% |
| !! | TATATTAGATCTTAAAAAAT+TGG | + | chr4_3:27816207-27816226 | None:intergenic | 10.0% |
| !! | ATAGAAAAAAGATTATAATT+AGG | - | chr4_3:27816298-27816317 | Msa0636800:CDS | 10.0% |
| !! | AAAAAAATCTTTATGTATTG+AGG | - | chr4_3:27816122-27816141 | Msa0636800:intron | 15.0% |
| !! | AAAAAAATCTTTATGTATTG+AGG | - | chr4_3:27816122-27816141 | Msa0636800:intron | 15.0% |
| !!! | AACAGTAGTTAATTCTTTTT+TGG | - | chr4_3:27815791-27815810 | Msa0636800:CDS | 20.0% |
| !!! | TTAATTCTTTTTTGGCTTTT+AGG | - | chr4_3:27815799-27815818 | Msa0636800:CDS | 20.0% |
| !! | ACAATATACAATAGTAATAC+AGG | + | chr4_3:27816055-27816074 | None:intergenic | 20.0% |
| !! | AACAAAATCACATTTATCAA+AGG | + | chr4_3:27816413-27816432 | None:intergenic | 20.0% |
| !!! | TTTGATAAATGTGATTTTGT+TGG | - | chr4_3:27816412-27816431 | Msa0636800:intron | 20.0% |
| !! | CAAACTTATAACATGTTAAA+TGG | - | chr4_3:27816874-27816893 | Msa0636800:intron | 20.0% |
| !! | ATGTTATTATGCAGTTATTT+AGG | + | chr4_3:27816921-27816940 | None:intergenic | 20.0% |
| !! | TAAAAAAAAATAGCAGTTGA+TGG | + | chr4_3:27816959-27816978 | None:intergenic | 20.0% |
| !! | ACATATGTTTAAACATATCA+AGG | + | chr4_3:27817293-27817312 | None:intergenic | 20.0% |
| !!! | AACAGTAGTTAATTCTTTTT+TGG | - | chr4_3:27815791-27815810 | Msa0636800:CDS | 20.0% |
| !!! | TTAATTCTTTTTTGGCTTTT+AGG | - | chr4_3:27815799-27815818 | Msa0636800:CDS | 20.0% |
| !! | ACAATATACAATAGTAATAC+AGG | + | chr4_3:27816055-27816074 | None:intergenic | 20.0% |
| !! | AACAAAATCACATTTATCAA+AGG | + | chr4_3:27816413-27816432 | None:intergenic | 20.0% |
| !!! | TTTGATAAATGTGATTTTGT+TGG | - | chr4_3:27816412-27816431 | Msa0636800:intron | 20.0% |
| !! | CAAACTTATAACATGTTAAA+TGG | - | chr4_3:27816874-27816893 | Msa0636800:intron | 20.0% |
| !! | ATGTTATTATGCAGTTATTT+AGG | + | chr4_3:27816921-27816940 | None:intergenic | 20.0% |
| !! | TAAAAAAAAATAGCAGTTGA+TGG | + | chr4_3:27816959-27816978 | None:intergenic | 20.0% |
| !! | ACATATGTTTAAACATATCA+AGG | + | chr4_3:27817293-27817312 | None:intergenic | 20.0% |
| ! | GATATGTTCTGCAAATTTAT+TGG | - | chr4_3:27816011-27816030 | Msa0636800:intron | 25.0% |
| ! | AAAATCTTTATGTATTGAGG+TGG | - | chr4_3:27816125-27816144 | Msa0636800:intron | 25.0% |
| !!! | CGAATATTTTTTTTCATGTG+CGG | + | chr4_3:27816325-27816344 | None:intergenic | 25.0% |
| ! | CACATTTATCAAAGGAAAAA+AGG | + | chr4_3:27816405-27816424 | None:intergenic | 25.0% |
| !!! | CAACAAATCAAATGGTTTTA+AGG | + | chr4_3:27816482-27816501 | None:intergenic | 25.0% |
| !! | AATTTGTAGTGTTTTCAACT+AGG | - | chr4_3:27816669-27816688 | Msa0636800:intron | 25.0% |
| !! | TTTAGGATATGTACATATGA+AGG | + | chr4_3:27816904-27816923 | None:intergenic | 25.0% |
| ! | TAAGATAGTAACATATCCTA+AGG | - | chr4_3:27816977-27816996 | Msa0636800:intron | 25.0% |
| ! | AAGATGTCATAAATTAGTCA+AGG | + | chr4_3:27817080-27817099 | None:intergenic | 25.0% |
| ! | TCAATTAAGATGATCTACAT+TGG | - | chr4_3:27817250-27817269 | Msa0636800:intron | 25.0% |
| !! | AAAAAACTCTTACTCTAAGA+TGG | - | chr4_3:27817539-27817558 | Msa0636800:intron | 25.0% |
| ! | GATATGTTCTGCAAATTTAT+TGG | - | chr4_3:27816011-27816030 | Msa0636800:intron | 25.0% |
| ! | AAAATCTTTATGTATTGAGG+TGG | - | chr4_3:27816125-27816144 | Msa0636800:intron | 25.0% |
| !!! | CGAATATTTTTTTTCATGTG+CGG | + | chr4_3:27816325-27816344 | None:intergenic | 25.0% |
| ! | CACATTTATCAAAGGAAAAA+AGG | + | chr4_3:27816405-27816424 | None:intergenic | 25.0% |
| !!! | CAACAAATCAAATGGTTTTA+AGG | + | chr4_3:27816482-27816501 | None:intergenic | 25.0% |
| !! | AATTTGTAGTGTTTTCAACT+AGG | - | chr4_3:27816669-27816688 | Msa0636800:intron | 25.0% |
| !! | TTTAGGATATGTACATATGA+AGG | + | chr4_3:27816904-27816923 | None:intergenic | 25.0% |
| ! | TAAGATAGTAACATATCCTA+AGG | - | chr4_3:27816977-27816996 | Msa0636800:intron | 25.0% |
| ! | AAGATGTCATAAATTAGTCA+AGG | + | chr4_3:27817080-27817099 | None:intergenic | 25.0% |
| ! | TCAATTAAGATGATCTACAT+TGG | - | chr4_3:27817250-27817269 | Msa0636800:intron | 25.0% |
| !! | AAAAAACTCTTACTCTAAGA+TGG | - | chr4_3:27817539-27817558 | Msa0636800:intron | 25.0% |
| ! | TTTTCTGTCCAATAAACCAA+GGG | + | chr4_3:27815910-27815929 | None:intergenic | 30.0% |
| ! | TTTTTCTGTCCAATAAACCA+AGG | + | chr4_3:27815911-27815930 | None:intergenic | 30.0% |
| TTCTTGTGAGGAAACATAAT+TGG | + | chr4_3:27816363-27816382 | None:intergenic | 30.0% | |
| ACATGCATCAACAAATCAAA+TGG | + | chr4_3:27816490-27816509 | None:intergenic | 30.0% | |
| GATGCATGTTTGAAAGAATT+AGG | - | chr4_3:27816501-27816520 | Msa0636800:intron | 30.0% | |
| ! | ATATCATGTAAGCTCTCTTT+TGG | + | chr4_3:27816528-27816547 | None:intergenic | 30.0% |
| ! | TACTCCTTTTATCTTCACAA+AGG | - | chr4_3:27816789-27816808 | Msa0636800:intron | 30.0% |
| CATACCTTTGTGAAGATAAA+AGG | + | chr4_3:27816796-27816815 | None:intergenic | 30.0% | |
| ATAGTAACATATCCTAAGGA+CGG | - | chr4_3:27816981-27817000 | Msa0636800:intron | 30.0% | |
| TCAAGGAAATAATCAGTTGT+AGG | + | chr4_3:27817063-27817082 | None:intergenic | 30.0% | |
| TGTGTGTTTGTTTGCTTATT+AGG | - | chr4_3:27817103-27817122 | Msa0636800:intron | 30.0% | |
| GTGTGTTTGTTTGCTTATTA+GGG | - | chr4_3:27817104-27817123 | Msa0636800:intron | 30.0% | |
| AGATGACAATGCTATGATTT+AGG | - | chr4_3:27817172-27817191 | Msa0636800:intron | 30.0% | |
| ! | TATGATTTAGGACACAAATG+TGG | - | chr4_3:27817184-27817203 | Msa0636800:intron | 30.0% |
| ! | CTACATTGGTTATTTATCTG+TGG | - | chr4_3:27817264-27817283 | Msa0636800:intron | 30.0% |
| !!! | TTAGAGTAAGAGTTTTTTGC+AGG | + | chr4_3:27817537-27817556 | None:intergenic | 30.0% |
| ! | TTTTCTGTCCAATAAACCAA+GGG | + | chr4_3:27815910-27815929 | None:intergenic | 30.0% |
| ! | TTTTTCTGTCCAATAAACCA+AGG | + | chr4_3:27815911-27815930 | None:intergenic | 30.0% |
| TTCTTGTGAGGAAACATAAT+TGG | + | chr4_3:27816363-27816382 | None:intergenic | 30.0% | |
| ACATGCATCAACAAATCAAA+TGG | + | chr4_3:27816490-27816509 | None:intergenic | 30.0% | |
| GATGCATGTTTGAAAGAATT+AGG | - | chr4_3:27816501-27816520 | Msa0636800:intron | 30.0% | |
| ! | ATATCATGTAAGCTCTCTTT+TGG | + | chr4_3:27816528-27816547 | None:intergenic | 30.0% |
| ! | TACTCCTTTTATCTTCACAA+AGG | - | chr4_3:27816789-27816808 | Msa0636800:intron | 30.0% |
| CATACCTTTGTGAAGATAAA+AGG | + | chr4_3:27816796-27816815 | None:intergenic | 30.0% | |
| ATAGTAACATATCCTAAGGA+CGG | - | chr4_3:27816981-27817000 | Msa0636800:intron | 30.0% | |
| TCAAGGAAATAATCAGTTGT+AGG | + | chr4_3:27817063-27817082 | None:intergenic | 30.0% | |
| TGTGTGTTTGTTTGCTTATT+AGG | - | chr4_3:27817103-27817122 | Msa0636800:intron | 30.0% | |
| GTGTGTTTGTTTGCTTATTA+GGG | - | chr4_3:27817104-27817123 | Msa0636800:intron | 30.0% | |
| AGATGACAATGCTATGATTT+AGG | - | chr4_3:27817172-27817191 | Msa0636800:intron | 30.0% | |
| ! | TATGATTTAGGACACAAATG+TGG | - | chr4_3:27817184-27817203 | Msa0636800:intron | 30.0% |
| ! | CTACATTGGTTATTTATCTG+TGG | - | chr4_3:27817264-27817283 | Msa0636800:intron | 30.0% |
| !!! | TTAGAGTAAGAGTTTTTTGC+AGG | + | chr4_3:27817537-27817556 | None:intergenic | 30.0% |
| ! | GAAGAAGCACGAGAAAATAA+AGG | - | chr4_3:27815741-27815760 | Msa0636800:CDS | 35.0% |
| AATAAAGGCGAGTACAAAGT+TGG | - | chr4_3:27815756-27815775 | Msa0636800:CDS | 35.0% | |
| ATAAAGGCGAGTACAAAGTT+GGG | - | chr4_3:27815757-27815776 | Msa0636800:CDS | 35.0% | |
| AAAGCTTTCCCTTGGTTTAT+TGG | - | chr4_3:27815899-27815918 | Msa0636800:CDS | 35.0% | |
| TTGTATCTGTTGTTCTTGTG+AGG | + | chr4_3:27816375-27816394 | None:intergenic | 35.0% | |
| AGAGAGCTTACATGATATGT+AGG | - | chr4_3:27816530-27816549 | Msa0636800:CDS | 35.0% | |
| !! | CAGTTGATGGATATGTACTT+AGG | + | chr4_3:27816946-27816965 | None:intergenic | 35.0% |
| TAGTAACATATCCTAAGGAC+GGG | - | chr4_3:27816982-27817001 | Msa0636800:intron | 35.0% | |
| ATCATAGCATTGTCATCTTG+TGG | + | chr4_3:27817170-27817189 | None:intergenic | 35.0% | |
| TAAGAACATGATCTGTCACT+TGG | - | chr4_3:27817342-27817361 | Msa0636800:intron | 35.0% | |
| ! | GAAGAAGCACGAGAAAATAA+AGG | - | chr4_3:27815741-27815760 | Msa0636800:CDS | 35.0% |
| AATAAAGGCGAGTACAAAGT+TGG | - | chr4_3:27815756-27815775 | Msa0636800:CDS | 35.0% | |
| ATAAAGGCGAGTACAAAGTT+GGG | - | chr4_3:27815757-27815776 | Msa0636800:CDS | 35.0% | |
| AAAGCTTTCCCTTGGTTTAT+TGG | - | chr4_3:27815899-27815918 | Msa0636800:CDS | 35.0% | |
| TTGTATCTGTTGTTCTTGTG+AGG | + | chr4_3:27816375-27816394 | None:intergenic | 35.0% | |
| AGAGAGCTTACATGATATGT+AGG | - | chr4_3:27816530-27816549 | Msa0636800:CDS | 35.0% | |
| !! | CAGTTGATGGATATGTACTT+AGG | + | chr4_3:27816946-27816965 | None:intergenic | 35.0% |
| TAGTAACATATCCTAAGGAC+GGG | - | chr4_3:27816982-27817001 | Msa0636800:intron | 35.0% | |
| ATCATAGCATTGTCATCTTG+TGG | + | chr4_3:27817170-27817189 | None:intergenic | 35.0% | |
| TAAGAACATGATCTGTCACT+TGG | - | chr4_3:27817342-27817361 | Msa0636800:intron | 35.0% | |
| TAAAGGCGAGTACAAAGTTG+GGG | - | chr4_3:27815758-27815777 | Msa0636800:CDS | 40.0% | |
| TCCATGAATGAGGTCGAAAA+TGG | - | chr4_3:27816573-27816592 | Msa0636800:intron | 40.0% | |
| ! | ACCATTTTCGACCTCATTCA+TGG | + | chr4_3:27816577-27816596 | None:intergenic | 40.0% |
| TGTCTTTGAACAACAAGTGC+AGG | - | chr4_3:27816759-27816778 | Msa0636800:intron | 40.0% | |
| GATGGTCATTGTTGATGCTA+AGG | - | chr4_3:27817019-27817038 | Msa0636800:intron | 40.0% | |
| TTCAACATTCTGCAAGATGG+TGG | + | chr4_3:27817385-27817404 | None:intergenic | 40.0% | |
| ACCATCTTGCAGAATGTTGA+AGG | - | chr4_3:27817384-27817403 | Msa0636800:intron | 40.0% | |
| TCCTTCAACATTCTGCAAGA+TGG | + | chr4_3:27817388-27817407 | None:intergenic | 40.0% | |
| ATCTTGCAGAATGTTGAAGG+AGG | - | chr4_3:27817387-27817406 | Msa0636800:intron | 40.0% | |
| CATACTACCTCTGCTAAGAT+TGG | - | chr4_3:27817465-27817484 | Msa0636800:intron | 40.0% | |
| ACTTGAACCAATCTTAGCAG+AGG | + | chr4_3:27817475-27817494 | None:intergenic | 40.0% | |
| TGATCTCATCCAGGATGATA+GGG | + | chr4_3:27817512-27817531 | None:intergenic | 40.0% | |
| TAAAGGCGAGTACAAAGTTG+GGG | - | chr4_3:27815758-27815777 | Msa0636800:CDS | 40.0% | |
| TCCATGAATGAGGTCGAAAA+TGG | - | chr4_3:27816573-27816592 | Msa0636800:intron | 40.0% | |
| ! | ACCATTTTCGACCTCATTCA+TGG | + | chr4_3:27816577-27816596 | None:intergenic | 40.0% |
| TGTCTTTGAACAACAAGTGC+AGG | - | chr4_3:27816759-27816778 | Msa0636800:intron | 40.0% | |
| GATGGTCATTGTTGATGCTA+AGG | - | chr4_3:27817019-27817038 | Msa0636800:intron | 40.0% | |
| TTCAACATTCTGCAAGATGG+TGG | + | chr4_3:27817385-27817404 | None:intergenic | 40.0% | |
| ACCATCTTGCAGAATGTTGA+AGG | - | chr4_3:27817384-27817403 | Msa0636800:intron | 40.0% | |
| TCCTTCAACATTCTGCAAGA+TGG | + | chr4_3:27817388-27817407 | None:intergenic | 40.0% | |
| ATCTTGCAGAATGTTGAAGG+AGG | - | chr4_3:27817387-27817406 | Msa0636800:intron | 40.0% | |
| CATACTACCTCTGCTAAGAT+TGG | - | chr4_3:27817465-27817484 | Msa0636800:intron | 40.0% | |
| ACTTGAACCAATCTTAGCAG+AGG | + | chr4_3:27817475-27817494 | None:intergenic | 40.0% | |
| TGATCTCATCCAGGATGATA+GGG | + | chr4_3:27817512-27817531 | None:intergenic | 40.0% | |
| GTTCTTGCAAAGCTTTCCCT+TGG | - | chr4_3:27815891-27815910 | Msa0636800:CDS | 45.0% | |
| GCTGTAGTACTCCATGAATG+AGG | - | chr4_3:27816563-27816582 | Msa0636800:intron | 45.0% | |
| AACATATCCTAAGGACGGGA+AGG | - | chr4_3:27816986-27817005 | Msa0636800:intron | 45.0% | |
| AAATGTTCCTTCCCGTCCTT+AGG | + | chr4_3:27816996-27817015 | None:intergenic | 45.0% | |
| TAAGGACGGGAAGGAACATT+TGG | - | chr4_3:27816995-27817014 | Msa0636800:intron | 45.0% | |
| !! | ATTCTGCAAGATGGTGGAAG+GGG | + | chr4_3:27817379-27817398 | None:intergenic | 45.0% |
| !! | CATTCTGCAAGATGGTGGAA+GGG | + | chr4_3:27817380-27817399 | None:intergenic | 45.0% |
| !! | ACATTCTGCAAGATGGTGGA+AGG | + | chr4_3:27817381-27817400 | None:intergenic | 45.0% |
| ATGTTGAAGGAGGCAAGAAC+TGG | - | chr4_3:27817397-27817416 | Msa0636800:intron | 45.0% | |
| TGTTGAAGGAGGCAAGAACT+GGG | - | chr4_3:27817398-27817417 | Msa0636800:intron | 45.0% | |
| ! | AGTATGAGCAAGAGGTGTGA+TGG | + | chr4_3:27817451-27817470 | None:intergenic | 45.0% |
| GTGATCTCATCCAGGATGAT+AGG | + | chr4_3:27817513-27817532 | None:intergenic | 45.0% | |
| GTTCTTGCAAAGCTTTCCCT+TGG | - | chr4_3:27815891-27815910 | Msa0636800:CDS | 45.0% | |
| GCTGTAGTACTCCATGAATG+AGG | - | chr4_3:27816563-27816582 | Msa0636800:intron | 45.0% | |
| AACATATCCTAAGGACGGGA+AGG | - | chr4_3:27816986-27817005 | Msa0636800:intron | 45.0% | |
| AAATGTTCCTTCCCGTCCTT+AGG | + | chr4_3:27816996-27817015 | None:intergenic | 45.0% | |
| TAAGGACGGGAAGGAACATT+TGG | - | chr4_3:27816995-27817014 | Msa0636800:intron | 45.0% | |
| !! | ATTCTGCAAGATGGTGGAAG+GGG | + | chr4_3:27817379-27817398 | None:intergenic | 45.0% |
| !! | CATTCTGCAAGATGGTGGAA+GGG | + | chr4_3:27817380-27817399 | None:intergenic | 45.0% |
| !! | ACATTCTGCAAGATGGTGGA+AGG | + | chr4_3:27817381-27817400 | None:intergenic | 45.0% |
| ATGTTGAAGGAGGCAAGAAC+TGG | - | chr4_3:27817397-27817416 | Msa0636800:intron | 45.0% | |
| TGTTGAAGGAGGCAAGAACT+GGG | - | chr4_3:27817398-27817417 | Msa0636800:intron | 45.0% | |
| ! | AGTATGAGCAAGAGGTGTGA+TGG | + | chr4_3:27817451-27817470 | None:intergenic | 45.0% |
| GTGATCTCATCCAGGATGAT+AGG | + | chr4_3:27817513-27817532 | None:intergenic | 45.0% | |
| CGGGAAGGAACATTTGGAGA+TGG | - | chr4_3:27817001-27817020 | Msa0636800:intron | 50.0% | |
| AAGTTGCAGATGCAGCACAC+TGG | + | chr4_3:27817317-27817336 | None:intergenic | 50.0% | |
| GCAGAGGTAGTATGAGCAAG+AGG | + | chr4_3:27817459-27817478 | None:intergenic | 50.0% | |
| CAGGATGATAGGGTGGATAG+GGG | + | chr4_3:27817502-27817521 | None:intergenic | 50.0% | |
| CCAGGATGATAGGGTGGATA+GGG | + | chr4_3:27817503-27817522 | None:intergenic | 50.0% | |
| TCCAGGATGATAGGGTGGAT+AGG | + | chr4_3:27817504-27817523 | None:intergenic | 50.0% | |
| TCTCATCCAGGATGATAGGG+TGG | + | chr4_3:27817509-27817528 | None:intergenic | 50.0% | |
| TTGCAGGAGTGATCTCATCC+AGG | + | chr4_3:27817521-27817540 | None:intergenic | 50.0% | |
| CGGGAAGGAACATTTGGAGA+TGG | - | chr4_3:27817001-27817020 | Msa0636800:intron | 50.0% | |
| AAGTTGCAGATGCAGCACAC+TGG | + | chr4_3:27817317-27817336 | None:intergenic | 50.0% | |
| GCAGAGGTAGTATGAGCAAG+AGG | + | chr4_3:27817459-27817478 | None:intergenic | 50.0% | |
| CAGGATGATAGGGTGGATAG+GGG | + | chr4_3:27817502-27817521 | None:intergenic | 50.0% | |
| CCAGGATGATAGGGTGGATA+GGG | + | chr4_3:27817503-27817522 | None:intergenic | 50.0% | |
| TCCAGGATGATAGGGTGGAT+AGG | + | chr4_3:27817504-27817523 | None:intergenic | 50.0% | |
| TCTCATCCAGGATGATAGGG+TGG | + | chr4_3:27817509-27817528 | None:intergenic | 50.0% | |
| TTGCAGGAGTGATCTCATCC+AGG | + | chr4_3:27817521-27817540 | None:intergenic | 50.0% | |
| TGATGGCAGCAGGGGTAAGT+TGG | + | chr4_3:27817434-27817453 | None:intergenic | 55.0% | |
| ! | AAGAGGTGTGATGGCAGCAG+GGG | + | chr4_3:27817442-27817461 | None:intergenic | 55.0% |
| ! | CAAGAGGTGTGATGGCAGCA+GGG | + | chr4_3:27817443-27817462 | None:intergenic | 55.0% |
| CCCTATCCACCCTATCATCC+TGG | - | chr4_3:27817500-27817519 | Msa0636800:intron | 55.0% | |
| TGATGGCAGCAGGGGTAAGT+TGG | + | chr4_3:27817434-27817453 | None:intergenic | 55.0% | |
| ! | AAGAGGTGTGATGGCAGCAG+GGG | + | chr4_3:27817442-27817461 | None:intergenic | 55.0% |
| ! | CAAGAGGTGTGATGGCAGCA+GGG | + | chr4_3:27817443-27817462 | None:intergenic | 55.0% |
| CCCTATCCACCCTATCATCC+TGG | - | chr4_3:27817500-27817519 | Msa0636800:intron | 55.0% | |
| ! | GCAAGAGGTGTGATGGCAGC+AGG | + | chr4_3:27817444-27817463 | None:intergenic | 60.0% |
| ! | GCAAGAGGTGTGATGGCAGC+AGG | + | chr4_3:27817444-27817463 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 27815738 | 27817581 | 27815738 | ID=Msa0636800;Name=Msa0636800 |
| chr4_3 | mRNA | 27815738 | 27817581 | 27815738 | ID=Msa0636800-mRNA-1;Parent=Msa0636800;Name=Msa0636800-mRNA-1;_AED=0.44;_eAED=0.76;_QI=0|0|0|0.8|1|1|5|0|133 |
| chr4_3 | exon | 27817553 | 27817581 | 27817553 | ID=Msa0636800-mRNA-1:exon:6893;Parent=Msa0636800-mRNA-1 |
| chr4_3 | exon | 27816509 | 27816569 | 27816509 | ID=Msa0636800-mRNA-1:exon:6892;Parent=Msa0636800-mRNA-1 |
| chr4_3 | exon | 27816279 | 27816338 | 27816279 | ID=Msa0636800-mRNA-1:exon:6891;Parent=Msa0636800-mRNA-1 |
| chr4_3 | exon | 27816087 | 27816125 | 27816087 | ID=Msa0636800-mRNA-1:exon:6890;Parent=Msa0636800-mRNA-1 |
| chr4_3 | exon | 27815738 | 27815950 | 27815738 | ID=Msa0636800-mRNA-1:exon:6889;Parent=Msa0636800-mRNA-1 |
| chr4_3 | CDS | 27817553 | 27817581 | 27817553 | ID=Msa0636800-mRNA-1:cds;Parent=Msa0636800-mRNA-1 |
| chr4_3 | CDS | 27816509 | 27816569 | 27816509 | ID=Msa0636800-mRNA-1:cds;Parent=Msa0636800-mRNA-1 |
| chr4_3 | CDS | 27816279 | 27816338 | 27816279 | ID=Msa0636800-mRNA-1:cds;Parent=Msa0636800-mRNA-1 |
| chr4_3 | CDS | 27816087 | 27816125 | 27816087 | ID=Msa0636800-mRNA-1:cds;Parent=Msa0636800-mRNA-1 |
| chr4_3 | CDS | 27815738 | 27815950 | 27815738 | ID=Msa0636800-mRNA-1:cds;Parent=Msa0636800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
