Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599740 | XP_003605903.1 | 97.826 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599740 | sp|P87027|SPG1_SCHPO | 45.455 | 187 | 102 | 0 | 90 | 276 | 9 | 195 | 2.89e-57 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0551950 | Msa0599740 | 0.816668 | 4.911770e-52 | -8.615850e-47 |
| Msa0599740 | Msa0640410 | 0.860129 | 2.561330e-63 | -8.615850e-47 |
| Msa0599740 | Msa0687000 | 0.803921 | 2.767718e-49 | -8.615850e-47 |
| Msa0599740 | Msa1305740 | 0.805424 | 1.344205e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599740 | MtrunA17_Chr4g0024431 | 97.826 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 0.0 | 563 |
| Msa0599740 | MtrunA17_Chr5g0443631 | 76.166 | 193 | 46 | 0 | 84 | 276 | 97 | 289 | 3.11e-109 | 317 |
| Msa0599740 | MtrunA17_Chr3g0109721 | 30.539 | 167 | 106 | 4 | 93 | 256 | 12 | 171 | 3.38e-14 | 69.7 |
| Msa0599740 | MtrunA17_Chr5g0433561 | 30.539 | 167 | 106 | 4 | 93 | 256 | 12 | 171 | 2.09e-13 | 67.4 |
| Msa0599740 | MtrunA17_Chr7g0265001 | 26.667 | 180 | 124 | 3 | 90 | 266 | 15 | 189 | 2.49e-13 | 67.4 |
| Msa0599740 | MtrunA17_Chr8g0390561 | 27.879 | 165 | 113 | 2 | 93 | 256 | 11 | 170 | 4.76e-13 | 66.6 |
| Msa0599740 | MtrunA17_Chr1g0180291 | 26.667 | 180 | 123 | 4 | 90 | 266 | 13 | 186 | 1.41e-12 | 65.5 |
| Msa0599740 | MtrunA17_Chr4g0055081 | 24.260 | 169 | 122 | 2 | 89 | 256 | 7 | 170 | 1.46e-12 | 65.1 |
| Msa0599740 | MtrunA17_Chr5g0400131 | 24.260 | 169 | 122 | 2 | 89 | 256 | 7 | 170 | 3.04e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599740 | AT3G21700.3 | 60.269 | 297 | 92 | 5 | 1 | 276 | 1 | 292 | 1.54e-110 | 321 |
| Msa0599740 | AT3G21700.1 | 59.933 | 297 | 92 | 6 | 1 | 276 | 1 | 291 | 1.28e-108 | 316 |
| Msa0599740 | AT5G54840.1 | 52.500 | 280 | 124 | 5 | 1 | 276 | 12 | 286 | 2.10e-91 | 272 |
| Msa0599740 | AT3G21700.2 | 52.459 | 244 | 89 | 6 | 1 | 223 | 1 | 238 | 1.44e-67 | 210 |
| Msa0599740 | AT5G54840.2 | 44.444 | 198 | 101 | 5 | 1 | 194 | 12 | 204 | 1.29e-40 | 140 |
| Msa0599740 | AT5G54840.3 | 55.714 | 140 | 57 | 3 | 59 | 194 | 66 | 204 | 3.93e-40 | 139 |
| Msa0599740 | AT4G19640.1 | 28.824 | 170 | 111 | 4 | 90 | 256 | 9 | 171 | 1.91e-14 | 70.9 |
| Msa0599740 | AT5G45130.1 | 28.824 | 170 | 111 | 4 | 90 | 256 | 9 | 171 | 4.48e-14 | 69.7 |
| Msa0599740 | AT2G44610.1 | 25.444 | 169 | 120 | 2 | 89 | 256 | 7 | 170 | 3.64e-13 | 67.4 |
| Msa0599740 | AT5G45130.2 | 29.268 | 164 | 106 | 4 | 96 | 256 | 23 | 179 | 5.30e-13 | 67.0 |
| Msa0599740 | AT5G03530.2 | 27.222 | 180 | 122 | 4 | 90 | 266 | 12 | 185 | 9.90e-13 | 66.2 |
| Msa0599740 | AT5G03530.1 | 27.222 | 180 | 122 | 4 | 90 | 266 | 12 | 185 | 9.90e-13 | 66.2 |
| Msa0599740 | AT5G59150.1 | 26.554 | 177 | 123 | 3 | 84 | 259 | 6 | 176 | 6.70e-12 | 63.9 |
| Msa0599740 | AT1G07410.1 | 24.862 | 181 | 129 | 3 | 81 | 259 | 1 | 176 | 3.59e-11 | 62.0 |
Find 79 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAACTGTAAGGGTAATT+TGG | 0.157269 | 4_2:-39892775 | None:intergenic |
| TGAAACTGTAAGGGTAATTT+GGG | 0.232830 | 4_2:-39892774 | None:intergenic |
| CACGTATATCCTATTGTATC+TGG | 0.293441 | 4_2:+39893710 | Msa0599740:CDS |
| AAATGAATTGGATACTGATT+TGG | 0.301503 | 4_2:+39893264 | Msa0599740:CDS |
| CTCAGCCATGAAAATGAAAA+AGG | 0.319557 | 4_2:-39892824 | None:intergenic |
| CACCGACTGCTTGCCTGCTC+TGG | 0.321280 | 4_2:+39893118 | Msa0599740:CDS |
| TTGTTGGGTGATTGCCAAAT+TGG | 0.353624 | 4_2:+39893304 | Msa0599740:CDS |
| ATTGTTGTAGACGGCAATTC+CGG | 0.368449 | 4_2:+39894310 | Msa0599740:intron |
| TTCACTCAAAATTAGCTTGT+TGG | 0.369785 | 4_2:+39893288 | Msa0599740:CDS |
| TCACTCAAAATTAGCTTGTT+GGG | 0.374517 | 4_2:+39893289 | Msa0599740:CDS |
| ATGGTCCATTGCATATCAAT+AGG | 0.376812 | 4_2:-39894371 | None:intergenic |
| TTCATAGTATTGAAACTGTA+AGG | 0.377115 | 4_2:-39892784 | None:intergenic |
| GCCTGCTCTGGAAAGCAGCC+CGG | 0.377573 | 4_2:+39893130 | Msa0599740:CDS |
| ATCTCCGCGGGCTTCGCTGT+TGG | 0.390597 | 4_2:+39893198 | Msa0599740:CDS |
| ACCGGGCTGCTTTCCAGAGC+AGG | 0.391261 | 4_2:-39893131 | None:intergenic |
| CCAGCTTCCAATGGCATGTA+AGG | 0.422047 | 4_2:+39893839 | Msa0599740:CDS |
| GGTACAAAGAAGCAAGGAAA+TGG | 0.432118 | 4_2:+39894203 | Msa0599740:CDS |
| AAATTGGAATGGAATGGAAT+GGG | 0.439308 | 4_2:-39892879 | None:intergenic |
| CAAGTCGATGCACATTAAAC+AGG | 0.439545 | 4_2:+39893895 | Msa0599740:CDS |
| AGAAGCAAGGAAATGGAATC+AGG | 0.446817 | 4_2:+39894210 | Msa0599740:CDS |
| TTGTACTTCCCAGATACAAT+AGG | 0.464379 | 4_2:-39893719 | None:intergenic |
| CAAAACTCTTCGACTTACCT+TGG | 0.467610 | 4_2:+39896402 | Msa0599740:CDS |
| CTGAATGAAATCATCAAACT+TGG | 0.473260 | 4_2:-39894345 | None:intergenic |
| TAAACAAATCAAATTACATA+TGG | 0.475223 | 4_2:+39897037 | Msa0599740:three_prime_UTR |
| ACGGCAATTCCGGTGTTGAT+AGG | 0.475548 | 4_2:+39894320 | Msa0599740:CDS |
| AAAATTGGAATGGAATGGAA+TGG | 0.481701 | 4_2:-39892880 | None:intergenic |
| TTCAGCATTGCCATCTCCGC+GGG | 0.486533 | 4_2:+39893186 | Msa0599740:CDS |
| AACAGCGAAGCCCGCGGAGA+TGG | 0.486569 | 4_2:-39893196 | None:intergenic |
| GTTTATTTCAGCAGACACTT+TGG | 0.492544 | 4_2:-39897019 | None:intergenic |
| ACTCCTTTGCGCTGCGAAGG+AGG | 0.492564 | 4_2:+39893047 | Msa0599740:CDS |
| GAGGAAAGGACCAAATCAAA+TGG | 0.496937 | 4_2:+39893663 | Msa0599740:CDS |
| TATTTGTACATGTTTAGATT+CGG | 0.497192 | 4_2:+39897073 | Msa0599740:three_prime_UTR |
| TTTATTTCAGTGTTCTGGGA+TGG | 0.498640 | 4_2:+39894182 | Msa0599740:intron |
| GTCACTCCTTTGCGCTGCGA+AGG | 0.511914 | 4_2:+39893044 | Msa0599740:CDS |
| GTGTATGTCTCTGAGCGAAA+TGG | 0.512855 | 4_2:-39892926 | None:intergenic |
| CCTTACATGCCATTGGAAGC+TGG | 0.517454 | 4_2:-39893839 | None:intergenic |
| GTGGAAAGGAATCTAAATGT+TGG | 0.519478 | 4_2:+39896428 | Msa0599740:CDS |
| TGGAATGGAATGGGGTTGGA+TGG | 0.522033 | 4_2:-39892870 | None:intergenic |
| AGATTCCTTTCCACTGTCCA+AGG | 0.525285 | 4_2:-39896419 | None:intergenic |
| ACTGAGTCCTTACATGCCAT+TGG | 0.527947 | 4_2:-39893846 | None:intergenic |
| GGAATGGAATGGAATGGGGT+TGG | 0.532214 | 4_2:-39892874 | None:intergenic |
| TGGTCCATTGCATATCAATA+GGG | 0.535828 | 4_2:-39894370 | None:intergenic |
| TGTTGCAGGTGAAATATGTT+GGG | 0.542595 | 4_2:+39893614 | Msa0599740:intron |
| ATGTTGCAGGTGAAATATGT+TGG | 0.547304 | 4_2:+39893613 | Msa0599740:intron |
| CTTCGACTTACCTTGGACAG+TGG | 0.548530 | 4_2:+39896409 | Msa0599740:CDS |
| AGCTCCCTATTGATATGCAA+TGG | 0.560194 | 4_2:+39894366 | Msa0599740:CDS |
| ACGTATATCCTATTGTATCT+GGG | 0.564779 | 4_2:+39893711 | Msa0599740:CDS |
| AAATCAAATGGACAAAACAT+TGG | 0.567322 | 4_2:+39893675 | Msa0599740:CDS |
| AAGAGCAGGGAGTGGAACAG+AGG | 0.569125 | 4_2:+39893644 | Msa0599740:CDS |
| AAGCCTCCTTCGCAGCGCAA+AGG | 0.570122 | 4_2:-39893050 | None:intergenic |
| GAGCTCGAAGGATACATCTC+CGG | 0.571862 | 4_2:-39893093 | None:intergenic |
| TATTGTATCTGGGAAGTACA+AGG | 0.574671 | 4_2:+39893721 | Msa0599740:CDS |
| ACTTACCTTGGACAGTGGAA+AGG | 0.576381 | 4_2:+39896414 | Msa0599740:CDS |
| ATCTCCGGAGCAACGATACA+CGG | 0.577259 | 4_2:-39893078 | None:intergenic |
| TTCCAGAGCAGGCAAGCAGT+CGG | 0.579459 | 4_2:-39893120 | None:intergenic |
| ACAGCCGTGTATCGTTGCTC+CGG | 0.583287 | 4_2:+39893074 | Msa0599740:CDS |
| CAGGGAGTGGAACAGAGGAA+AGG | 0.595988 | 4_2:+39893649 | Msa0599740:CDS |
| ATCAGAAGACCAGCTTCCAA+TGG | 0.601240 | 4_2:+39893830 | Msa0599740:CDS |
| GGAGATGGCAATGCTGAATG+TGG | 0.604089 | 4_2:-39893181 | None:intergenic |
| ATTCAGCATTGCCATCTCCG+CGG | 0.613287 | 4_2:+39893185 | Msa0599740:CDS |
| GCAATGGACCATCGCTAGTG+AGG | 0.615352 | 4_2:+39894382 | Msa0599740:CDS |
| TCATAGTATTGAAACTGTAA+GGG | 0.616811 | 4_2:-39892783 | None:intergenic |
| AATTGGAATGGAATGGAATG+GGG | 0.618861 | 4_2:-39892878 | None:intergenic |
| CTGTACGTAGCATTAGCACC+GGG | 0.621249 | 4_2:-39893148 | None:intergenic |
| GCTGTACGTAGCATTAGCAC+CGG | 0.623329 | 4_2:-39893149 | None:intergenic |
| AGCGATTACCTCACTAGCGA+TGG | 0.627900 | 4_2:-39894390 | None:intergenic |
| GACAAAACATTGGTTGTGAG+TGG | 0.635995 | 4_2:+39893685 | Msa0599740:CDS |
| ACAGGCAAGAACATATGCAA+AGG | 0.636144 | 4_2:+39896304 | Msa0599740:intron |
| CTGAGCGAAATGGAATGAAG+CGG | 0.640344 | 4_2:-39892916 | None:intergenic |
| TGGGATGGTACAAAGAAGCA+AGG | 0.641092 | 4_2:+39894197 | Msa0599740:CDS |
| AACTTGGTTCCTATCAACAC+CGG | 0.647380 | 4_2:-39894329 | None:intergenic |
| GCAGTCGGTGCAGAGCTCGA+AGG | 0.658902 | 4_2:-39893105 | None:intergenic |
| TGCACTTGAAAAGAACAAAG+TGG | 0.664540 | 4_2:-39896336 | None:intergenic |
| GAGATGGCAATGCTGAATGT+GGG | 0.664888 | 4_2:-39893180 | None:intergenic |
| TTGCAGAGAAGTTTCGACGG+TGG | 0.670379 | 4_2:-39893224 | None:intergenic |
| TGGTTGCAGAGAAGTTTCGA+CGG | 0.671139 | 4_2:-39893227 | None:intergenic |
| GAATCCAACAGCGAAGCCCG+CGG | 0.676951 | 4_2:-39893202 | None:intergenic |
| GAAACTGTAAGGGTAATTTG+GGG | 0.677919 | 4_2:-39892773 | None:intergenic |
| AATGGCATGTAAGGACTCAG+TGG | 0.696623 | 4_2:+39893848 | Msa0599740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAATTTGATGATTTT+AGG | + | chr4_2:39893750-39893769 | Msa0599740:intron | 10.0% |
| !! | TGATCAAATTATATTTATAA+GGG | - | chr4_2:39893778-39893797 | None:intergenic | 10.0% |
| !! | TTGATCAAATTATATTTATA+AGG | - | chr4_2:39893779-39893798 | None:intergenic | 10.0% |
| !! | TATGAATATAAATTTATAAG+AGG | + | chr4_2:39894757-39894776 | Msa0599740:intron | 10.0% |
| !! | ATGAATATAAATTTATAAGA+GGG | + | chr4_2:39894758-39894777 | Msa0599740:intron | 10.0% |
| !! | AAATCAAAATCATATAAATA+TGG | + | chr4_2:39896107-39896126 | Msa0599740:intron | 10.0% |
| !! | AGAATTAAAAAAAATTGGAA+TGG | - | chr4_2:39892893-39892912 | None:intergenic | 15.0% |
| !! | GGAATAGAATTAAAAAAAAT+TGG | - | chr4_2:39892898-39892917 | None:intergenic | 15.0% |
| !!! | TTTAAAATTATTAGTTGTGT+CGG | + | chr4_2:39893474-39893493 | Msa0599740:intron | 15.0% |
| !! | ATGTTTAATATTATACTTGA+AGG | + | chr4_2:39893798-39893817 | Msa0599740:intron | 15.0% |
| !! | TTAAGAATGAAAAAATGATT+CGG | - | chr4_2:39894674-39894693 | None:intergenic | 15.0% |
| !! | TCAATGTTTATCTTAAAATA+TGG | - | chr4_2:39894831-39894850 | None:intergenic | 15.0% |
| !! | CATATACTATAAAGTTAAAT+TGG | - | chr4_2:39894984-39895003 | None:intergenic | 15.0% |
| !! | TGTTTAATAATCATAATCAT+AGG | - | chr4_2:39895042-39895061 | None:intergenic | 15.0% |
| !! | ATTCATGATCAATTTAATTA+TGG | + | chr4_2:39895456-39895475 | Msa0599740:intron | 15.0% |
| !!! | AATTTGATTTAATAATTGAG+AGG | + | chr4_2:39895940-39895959 | Msa0599740:intron | 15.0% |
| !! | GTTTGTAAATAAATGATTAT+GGG | - | chr4_2:39896206-39896225 | None:intergenic | 15.0% |
| !! | TGTTTGTAAATAAATGATTA+TGG | - | chr4_2:39896207-39896226 | None:intergenic | 15.0% |
| !! | TAAACAAATCAAATTACATA+TGG | + | chr4_2:39897037-39897056 | Msa0599740:three_prime_UTR | 15.0% |
| !! | TAAAAAAAATTGGAATGGAA+TGG | - | chr4_2:39892888-39892907 | None:intergenic | 20.0% |
| !! | TTAAGTGTAATTACAAGTTT+CGG | - | chr4_2:39893443-39893462 | None:intergenic | 20.0% |
| !! | TTTCTGATGTCAATTATATT+TGG | + | chr4_2:39894106-39894125 | Msa0599740:intron | 20.0% |
| !! | CTGAAATAAAACCAAAAAAT+AGG | - | chr4_2:39894172-39894191 | None:intergenic | 20.0% |
| !!! | AATCAGGTAACATATTATTT+TGG | + | chr4_2:39894226-39894245 | Msa0599740:intron | 20.0% |
| !!! | CAATCTTCTAAAAATTAAGA+TGG | - | chr4_2:39894488-39894507 | None:intergenic | 20.0% |
| !!! | TTAATCTTCATCTTTTAAGT+TGG | + | chr4_2:39894782-39894801 | Msa0599740:intron | 20.0% |
| !! | AAATTAGTAATAGTGTCAAT+AGG | - | chr4_2:39895179-39895198 | None:intergenic | 20.0% |
| !! | ACTATTACTAATTTCTTTGT+AGG | + | chr4_2:39895185-39895204 | Msa0599740:intron | 20.0% |
| !! | CTATTACTAATTTCTTTGTA+GGG | + | chr4_2:39895186-39895205 | Msa0599740:intron | 20.0% |
| !!! | TGACTTTTGTCAAAATATTA+TGG | + | chr4_2:39895411-39895430 | Msa0599740:intron | 20.0% |
| !!! | GAAATACCAAATTTGAAATA+TGG | - | chr4_2:39895636-39895655 | None:intergenic | 20.0% |
| !! | ATTTAATAATTGAGAGGTTA+AGG | + | chr4_2:39895946-39895965 | Msa0599740:intron | 20.0% |
| !! | TTTAATAATTGAGAGGTTAA+GGG | + | chr4_2:39895947-39895966 | Msa0599740:intron | 20.0% |
| !! | TAAATAAATGATTATGGGTT+GGG | - | chr4_2:39896201-39896220 | None:intergenic | 20.0% |
| !! | TATTTGTACATGTTTAGATT+CGG | + | chr4_2:39897073-39897092 | Msa0599740:three_prime_UTR | 20.0% |
| !! | TCATAGTATTGAAACTGTAA+GGG | - | chr4_2:39892786-39892805 | None:intergenic | 25.0% |
| !! | TTCATAGTATTGAAACTGTA+AGG | - | chr4_2:39892787-39892806 | None:intergenic | 25.0% |
| !! | TCAGACTTTTGTCTAAAAAA+TGG | + | chr4_2:39893022-39893041 | Msa0599740:CDS | 25.0% |
| !! | TGTTTTTCTCACAAATGAAT+TGG | + | chr4_2:39893252-39893271 | Msa0599740:CDS | 25.0% |
| !! | AAATGAATTGGATACTGATT+TGG | + | chr4_2:39893264-39893283 | Msa0599740:CDS | 25.0% |
| ! | TTTGTTGAAAAAAATGTTGC+AGG | + | chr4_2:39893600-39893619 | Msa0599740:intron | 25.0% |
| !! | AATGTTTTGTCCATTTGATT+TGG | - | chr4_2:39893676-39893695 | None:intergenic | 25.0% |
| ! | AAATCAAATGGACAAAACAT+TGG | + | chr4_2:39893675-39893694 | Msa0599740:CDS | 25.0% |
| ! | AATATTATACTTGAAGGTGA+TGG | + | chr4_2:39893804-39893823 | Msa0599740:intron | 25.0% |
| ! | AAACAGGTAATTCTCAAATT+CGG | + | chr4_2:39893911-39893930 | Msa0599740:intron | 25.0% |
| !!! | GAAGAATCAATCCTATTTTT+TGG | + | chr4_2:39894158-39894177 | Msa0599740:intron | 25.0% |
| ! | AATTTCTGCTGAAAATTGAT+TGG | + | chr4_2:39894254-39894273 | Msa0599740:intron | 25.0% |
| !!! | TAACAACGTTTTATTCCAAA+AGG | + | chr4_2:39894870-39894889 | Msa0599740:intron | 25.0% |
| ! | ACATGTAAGACTAATCAATT+TGG | + | chr4_2:39894924-39894943 | Msa0599740:intron | 25.0% |
| !! | TATTCAGCTTTTCTCAATAA+AGG | - | chr4_2:39894957-39894976 | None:intergenic | 25.0% |
| ! | TAGGAATGACAAAACAATAA+AGG | - | chr4_2:39895023-39895042 | None:intergenic | 25.0% |
| ! | TTATTTACCAATTTGGTCAA+TGG | - | chr4_2:39895523-39895542 | None:intergenic | 25.0% |
| !!! | TAGAGTGTTATTTACCAATT+TGG | - | chr4_2:39895530-39895549 | None:intergenic | 25.0% |
| ! | TCACCGCATTAATAATTAAT+AGG | + | chr4_2:39895595-39895614 | Msa0599740:intron | 25.0% |
| ! | CGACCTATTAATTATTAATG+CGG | - | chr4_2:39895601-39895620 | None:intergenic | 25.0% |
| ! | AACGATCCATATTTCAAATT+TGG | + | chr4_2:39895627-39895646 | Msa0599740:intron | 25.0% |
| ! | TAAATATACAAGGGTAGAAA+AGG | - | chr4_2:39895778-39895797 | None:intergenic | 25.0% |
| ! | AAGTTGCACTAAATATACAA+GGG | - | chr4_2:39895787-39895806 | None:intergenic | 25.0% |
| ! | AAAGTTGCACTAAATATACA+AGG | - | chr4_2:39895788-39895807 | None:intergenic | 25.0% |
| ! | TTCAAATGTGACACTTATTT+AGG | + | chr4_2:39895987-39896006 | Msa0599740:intron | 25.0% |
| ! | AGTAAATGTGACAGTTAAAA+AGG | + | chr4_2:39896023-39896042 | Msa0599740:intron | 25.0% |
| ! | GTAAATAAATGATTATGGGT+TGG | - | chr4_2:39896202-39896221 | None:intergenic | 25.0% |
| ! | CATTTGAACATTGAATTAAC+AGG | + | chr4_2:39896286-39896305 | Msa0599740:intron | 25.0% |
| !! | GATTTTCAGAAATCAATGAT+GGG | - | chr4_2:39896458-39896477 | None:intergenic | 25.0% |
| !! | AGATTTTCAGAAATCAATGA+TGG | - | chr4_2:39896459-39896478 | None:intergenic | 25.0% |
| !!! | TTGAACATTGTTATTTCCAT+TGG | - | chr4_2:39896626-39896645 | None:intergenic | 25.0% |
| !!! | ACAAAAAGTGTGGTTTTAAA+TGG | + | chr4_2:39896660-39896679 | Msa0599740:intron | 25.0% |
| ! | CTAGTGAGAAATAAAAGTAA+TGG | + | chr4_2:39896697-39896716 | Msa0599740:intron | 25.0% |
| !!! | TTATGGTTTTGTCAAACTTA+CGG | + | chr4_2:39896809-39896828 | Msa0599740:intron | 25.0% |
| ! | TCGATTCAAACATGTTATTA+AGG | + | chr4_2:39896832-39896851 | Msa0599740:intron | 25.0% |
| !!! | GTTTTTTATCTTTGCTTTGA+AGG | + | chr4_2:39896877-39896896 | Msa0599740:intron | 25.0% |
| ! | GAGAAATAAAAGGAAACAAA+AGG | - | chr4_2:39896975-39896994 | None:intergenic | 25.0% |
| ! | AAAACTGTGTGAGAAATAAA+AGG | - | chr4_2:39896985-39897004 | None:intergenic | 25.0% |
| !!! | TTTTATTTCTCACACAGTTT+TGG | + | chr4_2:39896984-39897003 | Msa0599740:intron | 25.0% |
| TGAAACTGTAAGGGTAATTT+GGG | - | chr4_2:39892777-39892796 | None:intergenic | 30.0% | |
| TTGAAACTGTAAGGGTAATT+TGG | - | chr4_2:39892778-39892797 | None:intergenic | 30.0% | |
| !! | AAGCTCCTTTTTCATTTTCA+TGG | + | chr4_2:39892819-39892838 | Msa0599740:five_prime_UTR | 30.0% |
| AAATTGGAATGGAATGGAAT+GGG | - | chr4_2:39892882-39892901 | None:intergenic | 30.0% | |
| AAAATTGGAATGGAATGGAA+TGG | - | chr4_2:39892883-39892902 | None:intergenic | 30.0% | |
| TCATTTGTGAGAAAAACAGA+TGG | - | chr4_2:39893250-39893269 | None:intergenic | 30.0% | |
| !! | TTCACTCAAAATTAGCTTGT+TGG | + | chr4_2:39893288-39893307 | Msa0599740:CDS | 30.0% |
| !! | TCACTCAAAATTAGCTTGTT+GGG | + | chr4_2:39893289-39893308 | Msa0599740:CDS | 30.0% |
| AAAAACTCGTCTTTCCAATT+TGG | - | chr4_2:39893321-39893340 | None:intergenic | 30.0% | |
| !!! | AATTGGAAAGACGAGTTTTT+TGG | + | chr4_2:39893321-39893340 | Msa0599740:CDS | 30.0% |
| ACGTATATCCTATTGTATCT+GGG | + | chr4_2:39893711-39893730 | Msa0599740:CDS | 30.0% | |
| !! | ACTGTTTAATTTTGATCCAC+CGG | + | chr4_2:39894021-39894040 | Msa0599740:intron | 30.0% |
| !!! | TTGGTTTTATTTCAGTGTTC+TGG | + | chr4_2:39894177-39894196 | Msa0599740:intron | 30.0% |
| !!! | TGGTTTTATTTCAGTGTTCT+GGG | + | chr4_2:39894178-39894197 | Msa0599740:intron | 30.0% |
| CTGAATGAAATCATCAAACT+TGG | - | chr4_2:39894348-39894367 | None:intergenic | 30.0% | |
| !! | CTTTCTAGTTAGTGTATGTT+TGG | + | chr4_2:39894417-39894436 | Msa0599740:intron | 30.0% |
| !!! | TCTTTTAAGTTGGTTCTGTA+AGG | + | chr4_2:39894792-39894811 | Msa0599740:intron | 30.0% |
| ! | TTATGGAATTGAACTCCTTT+TGG | - | chr4_2:39894888-39894907 | None:intergenic | 30.0% |
| ! | TAGATTTTGTAGGCTTCTTA+TGG | - | chr4_2:39894905-39894924 | None:intergenic | 30.0% |
| ! | GTCTTACATGTAGATTTTGT+AGG | - | chr4_2:39894915-39894934 | None:intergenic | 30.0% |
| GTAACGTGTAAAGAAAATAG+GGG | - | chr4_2:39895157-39895176 | None:intergenic | 30.0% | |
| GGTAACGTGTAAAGAAAATA+GGG | - | chr4_2:39895158-39895177 | None:intergenic | 30.0% | |
| AGGTAACGTGTAAAGAAAAT+AGG | - | chr4_2:39895159-39895178 | None:intergenic | 30.0% | |
| TCTAATTGGAACACTATATG+CGG | - | chr4_2:39895236-39895255 | None:intergenic | 30.0% | |
| CAAATTAGTGGTATATGCAT+GGG | - | chr4_2:39895300-39895319 | None:intergenic | 30.0% | |
| CTAAAAAAGGACCAAATTAG+TGG | - | chr4_2:39895312-39895331 | None:intergenic | 30.0% | |
| GGTAAAAACGACTCATATAA+AGG | - | chr4_2:39895712-39895731 | None:intergenic | 30.0% | |
| !!! | TTAACGTTTTTAGCGAATGT+GGG | - | chr4_2:39895906-39895925 | None:intergenic | 30.0% |
| !!! | ATTAACGTTTTTAGCGAATG+TGG | - | chr4_2:39895907-39895926 | None:intergenic | 30.0% |
| TTCGCTAAAAACGTTAATCA+TGG | + | chr4_2:39895909-39895928 | Msa0599740:intron | 30.0% | |
| ATGTGACAGTTAAAAAGGAA+CGG | + | chr4_2:39896028-39896047 | Msa0599740:intron | 30.0% | |
| !! | ACTGCTTATAATGGATTATG+GGG | - | chr4_2:39896134-39896153 | None:intergenic | 30.0% |
| !! | GACTGCTTATAATGGATTAT+GGG | - | chr4_2:39896135-39896154 | None:intergenic | 30.0% |
| !! | TGACTGCTTATAATGGATTA+TGG | - | chr4_2:39896136-39896155 | None:intergenic | 30.0% |
| ! | TTTGATGATCATTGATCCTA+AGG | + | chr4_2:39896163-39896182 | Msa0599740:intron | 30.0% |
| ! | TTGATGATCATTGATCCTAA+GGG | + | chr4_2:39896164-39896183 | Msa0599740:intron | 30.0% |
| TTGACTTAAACATCTCTACT+TGG | - | chr4_2:39896550-39896569 | None:intergenic | 30.0% | |
| AGTCAAAATATCATCACTCT+TGG | + | chr4_2:39896564-39896583 | Msa0599740:intron | 30.0% | |
| GTCAAAATATCATCACTCTT+GGG | + | chr4_2:39896565-39896584 | Msa0599740:intron | 30.0% | |
| TCAAAATATCATCACTCTTG+GGG | + | chr4_2:39896566-39896585 | Msa0599740:intron | 30.0% | |
| TAGTGCGTGTTATGTTATTA+TGG | + | chr4_2:39896792-39896811 | Msa0599740:intron | 30.0% | |
| !! | ATGTTTCTGCTTTTACGCTT+CGG | - | chr4_2:39892725-39892744 | None:intergenic | 35.0% |
| GAAACTGTAAGGGTAATTTG+GGG | - | chr4_2:39892776-39892795 | None:intergenic | 35.0% | |
| CTCAGCCATGAAAATGAAAA+AGG | - | chr4_2:39892827-39892846 | None:intergenic | 35.0% | |
| AATTGGAATGGAATGGAATG+GGG | - | chr4_2:39892881-39892900 | None:intergenic | 35.0% | |
| TGTGTTCAATCTATGAAGCA+CGG | + | chr4_2:39893365-39893384 | Msa0599740:intron | 35.0% | |
| ATGTTGCAGGTGAAATATGT+TGG | + | chr4_2:39893613-39893632 | Msa0599740:intron | 35.0% | |
| TGTTGCAGGTGAAATATGTT+GGG | + | chr4_2:39893614-39893633 | Msa0599740:intron | 35.0% | |
| CACGTATATCCTATTGTATC+TGG | + | chr4_2:39893710-39893729 | Msa0599740:CDS | 35.0% | |
| TTGTACTTCCCAGATACAAT+AGG | - | chr4_2:39893722-39893741 | None:intergenic | 35.0% | |
| ! | TATTGTATCTGGGAAGTACA+AGG | + | chr4_2:39893721-39893740 | Msa0599740:CDS | 35.0% |
| TAACTACATTAGTCCGATCT+CGG | - | chr4_2:39893972-39893991 | None:intergenic | 35.0% | |
| ATATTTCCCACAATTACTCG+GGG | - | chr4_2:39894059-39894078 | None:intergenic | 35.0% | |
| GATATTTCCCACAATTACTC+GGG | - | chr4_2:39894060-39894079 | None:intergenic | 35.0% | |
| CGATATTTCCCACAATTACT+CGG | - | chr4_2:39894061-39894080 | None:intergenic | 35.0% | |
| !! | TTTATTTCAGTGTTCTGGGA+TGG | + | chr4_2:39894182-39894201 | Msa0599740:intron | 35.0% |
| TGGTCCATTGCATATCAATA+GGG | - | chr4_2:39894373-39894392 | None:intergenic | 35.0% | |
| ATGGTCCATTGCATATCAAT+AGG | - | chr4_2:39894374-39894393 | None:intergenic | 35.0% | |
| TTAGTGTATGTTTGGTTGAG+CGG | + | chr4_2:39894425-39894444 | Msa0599740:intron | 35.0% | |
| AAGATTGAAAATCCGTCTTG+AGG | + | chr4_2:39894501-39894520 | Msa0599740:intron | 35.0% | |
| GTCTCACATTGAATGAGATA+AGG | + | chr4_2:39894734-39894753 | Msa0599740:intron | 35.0% | |
| TTCAGTTGCAATGTCAATTC+AGG | + | chr4_2:39895087-39895106 | Msa0599740:intron | 35.0% | |
| CAATGTCAATTCAGGTGAAA+GGG | + | chr4_2:39895095-39895114 | Msa0599740:intron | 35.0% | |
| AAGGGATTGATAGGATTCTT+AGG | + | chr4_2:39895113-39895132 | Msa0599740:intron | 35.0% | |
| ! | AGCAGGTGATTGATTCTAAT+TGG | - | chr4_2:39895250-39895269 | None:intergenic | 35.0% |
| CCAAATTAGTGGTATATGCA+TGG | - | chr4_2:39895301-39895320 | None:intergenic | 35.0% | |
| CCATGCATATACCACTAATT+TGG | + | chr4_2:39895298-39895317 | Msa0599740:intron | 35.0% | |
| ACATGCACATGCACTAAAAA+AGG | - | chr4_2:39895325-39895344 | None:intergenic | 35.0% | |
| ! | TTTTAGTGCATGTGCATGTT+TGG | + | chr4_2:39895326-39895345 | Msa0599740:intron | 35.0% |
| GTCAAATCCATTGACCAAAT+TGG | + | chr4_2:39895513-39895532 | Msa0599740:intron | 35.0% | |
| !! | AGGGAGTATTAGACTAAGAT+TGG | - | chr4_2:39895684-39895703 | None:intergenic | 35.0% |
| GACTCATATAAAGGAACAGA+GGG | - | chr4_2:39895703-39895722 | None:intergenic | 35.0% | |
| AGGGTAGAAAAGGAAAAAGA+GGG | - | chr4_2:39895768-39895787 | None:intergenic | 35.0% | |
| AAGGGTAGAAAAGGAAAAAG+AGG | - | chr4_2:39895769-39895788 | None:intergenic | 35.0% | |
| !! | TTTGGACTTTGGAGTACAAA+AGG | - | chr4_2:39895812-39895831 | None:intergenic | 35.0% |
| CACTATTGTCAGAAAAACGT+GGG | - | chr4_2:39895842-39895861 | None:intergenic | 35.0% | |
| ! | CACGTTTTTCTGACAATAGT+GGG | + | chr4_2:39895841-39895860 | Msa0599740:intron | 35.0% |
| !! | TACTCTAAAGTCCAAATGCA+TGG | + | chr4_2:39895880-39895899 | Msa0599740:intron | 35.0% |
| AAACGTTAATCATGGTGTAG+AGG | + | chr4_2:39895917-39895936 | Msa0599740:intron | 35.0% | |
| GGATCAATGATCATCAAACA+TGG | - | chr4_2:39896161-39896180 | None:intergenic | 35.0% | |
| !! | TAAATGATTATGGGTTGGGT+AGG | - | chr4_2:39896197-39896216 | None:intergenic | 35.0% |
| TGCACTTGAAAAGAACAAAG+TGG | - | chr4_2:39896339-39896358 | None:intergenic | 35.0% | |
| GTGGAAAGGAATCTAAATGT+TGG | + | chr4_2:39896428-39896447 | Msa0599740:CDS | 35.0% | |
| CTTAAACATCTCTACTTGGT+CGG | - | chr4_2:39896546-39896565 | None:intergenic | 35.0% | |
| ! | CATAGACATGTCATTTCCAA+TGG | + | chr4_2:39896607-39896626 | Msa0599740:intron | 35.0% |
| CAATCATCACACAAAAAGTG+TGG | + | chr4_2:39896650-39896669 | Msa0599740:intron | 35.0% | |
| ACAAAAGGAGAATCAGTACA+TGG | - | chr4_2:39896960-39896979 | None:intergenic | 35.0% | |
| GTTTATTTCAGCAGACACTT+TGG | - | chr4_2:39897022-39897041 | None:intergenic | 35.0% | |
| TTGTTGGGTGATTGCCAAAT+TGG | + | chr4_2:39893304-39893323 | Msa0599740:CDS | 40.0% | |
| !! | TATTAGTTGTGTCGGCTTGT+CGG | + | chr4_2:39893482-39893501 | Msa0599740:intron | 40.0% |
| AACACCTTGAACACAGATAC+TGG | - | chr4_2:39893522-39893541 | None:intergenic | 40.0% | |
| TGTTGGGAATGAAAAAGAGC+AGG | + | chr4_2:39893630-39893649 | Msa0599740:CDS | 40.0% | |
| GTTGGGAATGAAAAAGAGCA+GGG | + | chr4_2:39893631-39893650 | Msa0599740:CDS | 40.0% | |
| GAGGAAAGGACCAAATCAAA+TGG | + | chr4_2:39893663-39893682 | Msa0599740:CDS | 40.0% | |
| ! | GACAAAACATTGGTTGTGAG+TGG | + | chr4_2:39893685-39893704 | Msa0599740:CDS | 40.0% |
| CAAGTCGATGCACATTAAAC+AGG | + | chr4_2:39893895-39893914 | Msa0599740:CDS | 40.0% | |
| GTTGGATATTAGACCGAGAT+CGG | + | chr4_2:39893956-39893975 | Msa0599740:intron | 40.0% | |
| TATTTCCCACAATTACTCGG+GGG | - | chr4_2:39894058-39894077 | None:intergenic | 40.0% | |
| !! | ATTGTGGGAAATATCGACTC+TGG | + | chr4_2:39894065-39894084 | Msa0599740:intron | 40.0% |
| !! | TTGTGGGAAATATCGACTCT+GGG | + | chr4_2:39894066-39894085 | Msa0599740:intron | 40.0% |
| GGTACAAAGAAGCAAGGAAA+TGG | + | chr4_2:39894203-39894222 | Msa0599740:CDS | 40.0% | |
| AGAAGCAAGGAAATGGAATC+AGG | + | chr4_2:39894210-39894229 | Msa0599740:CDS | 40.0% | |
| GTGTGCTTGATTGTTGTAGA+CGG | + | chr4_2:39894301-39894320 | Msa0599740:intron | 40.0% | |
| ATTGTTGTAGACGGCAATTC+CGG | + | chr4_2:39894310-39894329 | Msa0599740:intron | 40.0% | |
| AACTTGGTTCCTATCAACAC+CGG | - | chr4_2:39894332-39894351 | None:intergenic | 40.0% | |
| AGCTCCCTATTGATATGCAA+TGG | + | chr4_2:39894366-39894385 | Msa0599740:CDS | 40.0% | |
| TCCTGATTTCACTGAAAACG+CGG | - | chr4_2:39894573-39894592 | None:intergenic | 40.0% | |
| CGTTTGTTTGAATTGGCGTT+AGG | - | chr4_2:39894651-39894670 | None:intergenic | 40.0% | |
| GATTCGGCGTTTGTTTGAAT+TGG | - | chr4_2:39894658-39894677 | None:intergenic | 40.0% | |
| !! | AGTTGGTTCTGTAAGGTTGT+AGG | + | chr4_2:39894799-39894818 | Msa0599740:intron | 40.0% |
| GCAATGTCAATTCAGGTGAA+AGG | + | chr4_2:39895094-39895113 | Msa0599740:intron | 40.0% | |
| TTCAGGTGAAAGGGATTGAT+AGG | + | chr4_2:39895104-39895123 | Msa0599740:intron | 40.0% | |
| ATCACCTGCTTATAGCATAG+TGG | + | chr4_2:39895260-39895279 | Msa0599740:intron | 40.0% | |
| !! | ACATAGATGTCGATTTGCTC+TGG | + | chr4_2:39895556-39895575 | Msa0599740:intron | 40.0% |
| TTATTAATGCGGTGAGTGTG+TGG | - | chr4_2:39895590-39895609 | None:intergenic | 40.0% | |
| CGACTCATATAAAGGAACAG+AGG | - | chr4_2:39895704-39895723 | None:intergenic | 40.0% | |
| !! | TGCATTGGTTGCTGCAAATT+TGG | - | chr4_2:39895733-39895752 | None:intergenic | 40.0% |
| GGGTATAGTATGCTATGCAT+TGG | - | chr4_2:39895748-39895767 | None:intergenic | 40.0% | |
| TACTCCAAAGTCCAAATGCA+TGG | + | chr4_2:39895816-39895835 | Msa0599740:intron | 40.0% | |
| CCACTATTGTCAGAAAAACG+TGG | - | chr4_2:39895843-39895862 | None:intergenic | 40.0% | |
| ! | CCACGTTTTTCTGACAATAG+TGG | + | chr4_2:39895840-39895859 | Msa0599740:intron | 40.0% |
| TGACAGTTAAAAAGGAACGG+AGG | + | chr4_2:39896031-39896050 | Msa0599740:intron | 40.0% | |
| GACAGTTAAAAAGGAACGGA+GGG | + | chr4_2:39896032-39896051 | Msa0599740:intron | 40.0% | |
| ! | CATGGACTGACTGCTTATAA+TGG | - | chr4_2:39896143-39896162 | None:intergenic | 40.0% |
| ACAGGCAAGAACATATGCAA+AGG | + | chr4_2:39896304-39896323 | Msa0599740:intron | 40.0% | |
| CAAAACTCTTCGACTTACCT+TGG | + | chr4_2:39896402-39896421 | Msa0599740:CDS | 40.0% | |
| !! | TGGTCGGTTGACTTACTTTT+TGG | - | chr4_2:39896530-39896549 | None:intergenic | 40.0% |
| CTGAGCGAAATGGAATGAAG+CGG | - | chr4_2:39892919-39892938 | None:intergenic | 45.0% | |
| GTGTATGTCTCTGAGCGAAA+TGG | - | chr4_2:39892929-39892948 | None:intergenic | 45.0% | |
| GAGATGGCAATGCTGAATGT+GGG | - | chr4_2:39893183-39893202 | None:intergenic | 45.0% | |
| TGGTTGCAGAGAAGTTTCGA+CGG | - | chr4_2:39893230-39893249 | None:intergenic | 45.0% | |
| ACAGGAACACGACTAATCTG+AGG | - | chr4_2:39893396-39893415 | None:intergenic | 45.0% | |
| CACAGATACTGGACACAACA+CGG | - | chr4_2:39893511-39893530 | None:intergenic | 45.0% | |
| GTGTCCAGTATCTGTGTTCA+AGG | + | chr4_2:39893515-39893534 | Msa0599740:intron | 45.0% | |
| GAATGAAAAAGAGCAGGGAG+TGG | + | chr4_2:39893636-39893655 | Msa0599740:CDS | 45.0% | |
| ATCAGAAGACCAGCTTCCAA+TGG | + | chr4_2:39893830-39893849 | Msa0599740:CDS | 45.0% | |
| ACTGAGTCCTTACATGCCAT+TGG | - | chr4_2:39893849-39893868 | None:intergenic | 45.0% | |
| AATGGCATGTAAGGACTCAG+TGG | + | chr4_2:39893848-39893867 | Msa0599740:CDS | 45.0% | |
| !! | TGTGTAGCGTTGATGGTAGT+TGG | + | chr4_2:39893938-39893957 | Msa0599740:intron | 45.0% |
| TATGTACCCCCGAGTAATTG+TGG | + | chr4_2:39894049-39894068 | Msa0599740:intron | 45.0% | |
| ATGTACCCCCGAGTAATTGT+GGG | + | chr4_2:39894050-39894069 | Msa0599740:intron | 45.0% | |
| TGGGATGGTACAAAGAAGCA+AGG | + | chr4_2:39894197-39894216 | Msa0599740:CDS | 45.0% | |
| !! | GTTGTGATTTTGACCTCACG+TGG | - | chr4_2:39894544-39894563 | None:intergenic | 45.0% |
| ! | TCCGCGTTTTCAGTGAAATC+AGG | + | chr4_2:39894569-39894588 | Msa0599740:intron | 45.0% |
| ATATGCATGGGATCCACAAG+TGG | - | chr4_2:39895288-39895307 | None:intergenic | 45.0% | |
| AAAAACGTGGGCCATGCATT+TGG | - | chr4_2:39895830-39895849 | None:intergenic | 45.0% | |
| ACTTACCTTGGACAGTGGAA+AGG | + | chr4_2:39896414-39896433 | Msa0599740:CDS | 45.0% | |
| AGATTCCTTTCCACTGTCCA+AGG | - | chr4_2:39896422-39896441 | None:intergenic | 45.0% | |
| GGAGAATCAGTACATGGCTA+AGG | - | chr4_2:39896954-39896973 | None:intergenic | 45.0% | |
| !!! | CTCACACAGTTTTGGAGTTG+TGG | + | chr4_2:39896992-39897011 | Msa0599740:intron | 45.0% |
| TGGAATGGAATGGGGTTGGA+TGG | - | chr4_2:39892873-39892892 | None:intergenic | 50.0% | |
| GGAATGGAATGGAATGGGGT+TGG | - | chr4_2:39892877-39892896 | None:intergenic | 50.0% | |
| ATCTCCGGAGCAACGATACA+CGG | - | chr4_2:39893081-39893100 | None:intergenic | 50.0% | |
| GAGCTCGAAGGATACATCTC+CGG | - | chr4_2:39893096-39893115 | None:intergenic | 50.0% | |
| CTGTACGTAGCATTAGCACC+GGG | - | chr4_2:39893151-39893170 | None:intergenic | 50.0% | |
| GCTGTACGTAGCATTAGCAC+CGG | - | chr4_2:39893152-39893171 | None:intergenic | 50.0% | |
| GGAGATGGCAATGCTGAATG+TGG | - | chr4_2:39893184-39893203 | None:intergenic | 50.0% | |
| ATTCAGCATTGCCATCTCCG+CGG | + | chr4_2:39893185-39893204 | Msa0599740:CDS | 50.0% | |
| TTGCAGAGAAGTTTCGACGG+TGG | - | chr4_2:39893227-39893246 | None:intergenic | 50.0% | |
| CCTTACATGCCATTGGAAGC+TGG | - | chr4_2:39893842-39893861 | None:intergenic | 50.0% | |
| CCAGCTTCCAATGGCATGTA+AGG | + | chr4_2:39893839-39893858 | Msa0599740:CDS | 50.0% | |
| ! | CGGAATGTGTGTAGCGTTGA+TGG | + | chr4_2:39893931-39893950 | Msa0599740:intron | 50.0% |
| !! | ACGGCAATTCCGGTGTTGAT+AGG | + | chr4_2:39894320-39894339 | Msa0599740:CDS | 50.0% |
| AGCGATTACCTCACTAGCGA+TGG | - | chr4_2:39894393-39894412 | None:intergenic | 50.0% | |
| GAAAATCCGTCTTGAGGCTG+TGG | + | chr4_2:39894507-39894526 | Msa0599740:intron | 50.0% | |
| GGCACCACTATGCTATAAGC+AGG | - | chr4_2:39895267-39895286 | None:intergenic | 50.0% | |
| !! | TAGCATAGTGGTGCCACTTG+TGG | + | chr4_2:39895272-39895291 | Msa0599740:intron | 50.0% |
| TGGGCCATGCATTTGGACTT+TGG | - | chr4_2:39895823-39895842 | None:intergenic | 50.0% | |
| GAATTCACGCATTCACGCAG+AGG | - | chr4_2:39896082-39896101 | None:intergenic | 50.0% | |
| GCGTGAATGCGTGAATTCAC+TGG | + | chr4_2:39896084-39896103 | Msa0599740:intron | 50.0% | |
| CTTCGACTTACCTTGGACAG+TGG | + | chr4_2:39896409-39896428 | Msa0599740:CDS | 50.0% | |
| ! | CTTGGGGCAATCGAGTTGTT+AGG | + | chr4_2:39896582-39896601 | Msa0599740:intron | 50.0% |
| ACAGCCGTGTATCGTTGCTC+CGG | + | chr4_2:39893074-39893093 | Msa0599740:CDS | 55.0% | |
| TTCCAGAGCAGGCAAGCAGT+CGG | - | chr4_2:39893123-39893142 | None:intergenic | 55.0% | |
| TTCAGCATTGCCATCTCCGC+GGG | + | chr4_2:39893186-39893205 | Msa0599740:CDS | 55.0% | |
| ACACGACACGTGTCTGACAC+AGG | - | chr4_2:39893414-39893433 | None:intergenic | 55.0% | |
| AAGAGCAGGGAGTGGAACAG+AGG | + | chr4_2:39893644-39893663 | Msa0599740:CDS | 55.0% | |
| CAGGGAGTGGAACAGAGGAA+AGG | + | chr4_2:39893649-39893668 | Msa0599740:CDS | 55.0% | |
| ! | CTCGGGGGTACATAAGTGAC+CGG | - | chr4_2:39894043-39894062 | None:intergenic | 55.0% |
| GCAATGGACCATCGCTAGTG+AGG | + | chr4_2:39894382-39894401 | Msa0599740:CDS | 55.0% | |
| AATCCGTCTTGAGGCTGTGG+CGG | + | chr4_2:39894510-39894529 | Msa0599740:intron | 55.0% | |
| GCGAATGTGGGCCATGCATT+TGG | - | chr4_2:39895894-39895913 | None:intergenic | 55.0% | |
| TGGGTAGGCTTGTCTCCCTT+AGG | - | chr4_2:39896182-39896201 | None:intergenic | 55.0% | |
| GTCACTCCTTTGCGCTGCGA+AGG | + | chr4_2:39893044-39893063 | Msa0599740:CDS | 60.0% | |
| ACTCCTTTGCGCTGCGAAGG+AGG | + | chr4_2:39893047-39893066 | Msa0599740:CDS | 60.0% | |
| AAGCCTCCTTCGCAGCGCAA+AGG | - | chr4_2:39893053-39893072 | None:intergenic | 60.0% | |
| GAATCCAACAGCGAAGCCCG+CGG | - | chr4_2:39893205-39893224 | None:intergenic | 60.0% | |
| ! | GGGGGTACATAAGTGACCGG+TGG | - | chr4_2:39894040-39894059 | None:intergenic | 60.0% |
| GCAGTCGGTGCAGAGCTCGA+AGG | - | chr4_2:39893108-39893127 | None:intergenic | 65.0% | |
| ! | CACCGACTGCTTGCCTGCTC+TGG | + | chr4_2:39893118-39893137 | Msa0599740:CDS | 65.0% |
| !! | GCCTGCTCTGGAAAGCAGCC+CGG | + | chr4_2:39893130-39893149 | Msa0599740:CDS | 65.0% |
| ! | ACCGGGCTGCTTTCCAGAGC+AGG | - | chr4_2:39893134-39893153 | None:intergenic | 65.0% |
| AACAGCGAAGCCCGCGGAGA+TGG | - | chr4_2:39893199-39893218 | None:intergenic | 65.0% | |
| ATCTCCGCGGGCTTCGCTGT+TGG | + | chr4_2:39893198-39893217 | Msa0599740:CDS | 65.0% | |
| CCACCGCCACAGCCTCAAGA+CGG | - | chr4_2:39894516-39894535 | None:intergenic | 65.0% | |
| CGTCTTGAGGCTGTGGCGGT+GGG | + | chr4_2:39894514-39894533 | Msa0599740:intron | 65.0% | |
| GGCGGTGGGAATTCCACGTG+AGG | + | chr4_2:39894528-39894547 | Msa0599740:intron | 65.0% | |
| CCGTCTTGAGGCTGTGGCGG+TGG | + | chr4_2:39894513-39894532 | Msa0599740:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 39892692 | 39897096 | 39892692 | ID=Msa0599740;Name=Msa0599740 |
| chr4_2 | mRNA | 39892692 | 39897096 | 39892692 | ID=Msa0599740-mRNA-1;Parent=Msa0599740;Name=Msa0599740-mRNA-1;_AED=0.18;_eAED=0.18;_QI=327|1|1|1|0.83|0.71|7|157|276 |
| chr4_2 | exon | 39892692 | 39893342 | 39892692 | ID=Msa0599740-mRNA-1:exon:8694;Parent=Msa0599740-mRNA-1 |
| chr4_2 | exon | 39893622 | 39893742 | 39893622 | ID=Msa0599740-mRNA-1:exon:8695;Parent=Msa0599740-mRNA-1 |
| chr4_2 | exon | 39893820 | 39893916 | 39893820 | ID=Msa0599740-mRNA-1:exon:8696;Parent=Msa0599740-mRNA-1 |
| chr4_2 | exon | 39894192 | 39894231 | 39894192 | ID=Msa0599740-mRNA-1:exon:8697;Parent=Msa0599740-mRNA-1 |
| chr4_2 | exon | 39894320 | 39894403 | 39894320 | ID=Msa0599740-mRNA-1:exon:8698;Parent=Msa0599740-mRNA-1 |
| chr4_2 | exon | 39896308 | 39896533 | 39896308 | ID=Msa0599740-mRNA-1:exon:8699;Parent=Msa0599740-mRNA-1 |
| chr4_2 | exon | 39897001 | 39897096 | 39897001 | ID=Msa0599740-mRNA-1:exon:8700;Parent=Msa0599740-mRNA-1 |
| chr4_2 | five_prime_UTR | 39892692 | 39893018 | 39892692 | ID=Msa0599740-mRNA-1:five_prime_utr;Parent=Msa0599740-mRNA-1 |
| chr4_2 | CDS | 39893019 | 39893342 | 39893019 | ID=Msa0599740-mRNA-1:cds;Parent=Msa0599740-mRNA-1 |
| chr4_2 | CDS | 39893622 | 39893742 | 39893622 | ID=Msa0599740-mRNA-1:cds;Parent=Msa0599740-mRNA-1 |
| chr4_2 | CDS | 39893820 | 39893916 | 39893820 | ID=Msa0599740-mRNA-1:cds;Parent=Msa0599740-mRNA-1 |
| chr4_2 | CDS | 39894192 | 39894231 | 39894192 | ID=Msa0599740-mRNA-1:cds;Parent=Msa0599740-mRNA-1 |
| chr4_2 | CDS | 39894320 | 39894403 | 39894320 | ID=Msa0599740-mRNA-1:cds;Parent=Msa0599740-mRNA-1 |
| chr4_2 | CDS | 39896308 | 39896472 | 39896308 | ID=Msa0599740-mRNA-1:cds;Parent=Msa0599740-mRNA-1 |
| chr4_2 | three_prime_UTR | 39896473 | 39896533 | 39896473 | ID=Msa0599740-mRNA-1:three_prime_utr;Parent=Msa0599740-mRNA-1 |
| chr4_2 | three_prime_UTR | 39897001 | 39897096 | 39897001 | ID=Msa0599740-mRNA-1:three_prime_utr;Parent=Msa0599740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
