AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0641200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641200 MtrunA17_Chr4g0012821 98.750 80 1 0 1 80 1 80 2.17e-51 155
Msa0641200 MtrunA17_Chr8g0379051 85.366 82 10 1 1 80 1 82 4.67e-37 119
Msa0641200 MtrunA17_Chr1g0191471 59.494 79 24 1 10 80 26 104 1.67e-24 88.6
Msa0641200 MtrunA17_Chr2g0326321 60.241 83 27 1 4 80 21 103 9.17e-24 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641200 AT3G60540.2 84.211 76 11 1 3 77 2 77 6.30e-35 114
Msa0641200 AT3G60540.3 84.211 76 11 1 3 77 2 77 6.30e-35 114
Msa0641200 AT3G60540.1 84.211 76 11 1 3 77 2 77 6.30e-35 114
Msa0641200 AT2G45070.1 84.810 79 8 1 3 77 2 80 5.10e-33 109
Msa0641200 AT2G45070.4 84.810 79 8 1 3 77 2 80 5.10e-33 109
Msa0641200 AT2G45070.2 84.810 79 8 1 3 77 2 80 5.10e-33 109
Msa0641200 AT2G45070.3 84.810 79 8 1 3 77 2 80 5.10e-33 109
Msa0641200 AT5G60460.2 58.333 84 27 1 5 80 22 105 1.76e-22 83.6
Msa0641200 AT5G60460.1 58.333 84 27 1 5 80 22 105 1.76e-22 83.6

Find 44 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTGCAGCACTTCCTCTTT+GGG 0.197645 4_3:-41169066 None:intergenic
TAGCTGCAGCACTTCCTCTT+TGG 0.251750 4_3:-41169067 None:intergenic
CTTTGTCAGTACTTAGTAAT+AGG 0.295433 4_3:+41169561 Msa0641200:three_prime_UTR
ACATATCAGGTTGTCATATA+TGG 0.297992 4_3:-41169620 None:intergenic
TGTACCTGAATGAGAAATTC+TGG 0.330483 4_3:-41168270 None:intergenic
TCATTTCAGAAAATGGCTTT+AGG 0.333821 4_3:+41169032 Msa0641200:intron
GTAACCAGAATTTCTCATTC+AGG 0.335677 4_3:+41168266 Msa0641200:five_prime_UTR
GGAGCCTCTGGAGGAGCAGC+TGG 0.376820 4_3:+41169125 Msa0641200:CDS
TTCTGGTTACTGAGATTTGT+AGG 0.387656 4_3:-41168253 None:intergenic
ACACCAGGTGGTGGAGCCTC+TGG 0.397039 4_3:+41169113 Msa0641200:CDS
TGTACTTGAGGGAGGCTTAA+GGG 0.407052 4_3:+41169267 Msa0641200:CDS
CCTCCAGAGGCTCCACCACC+TGG 0.407875 4_3:-41169116 None:intergenic
CTGTACTTGAGGGAGGCTTA+AGG 0.429114 4_3:+41169266 Msa0641200:CDS
CAGAAAATGGCTTTAGGTGG+AGG 0.431685 4_3:+41169038 Msa0641200:intron
TTACTGAGATTTGTAGGAAT+TGG 0.453942 4_3:-41168247 None:intergenic
GGGATGCAAGGCAAGAAGTT+GGG 0.467110 4_3:+41169287 Msa0641200:three_prime_UTR
ATAAAGTATAACGACATATC+AGG 0.468466 4_3:-41169633 None:intergenic
CGTGGGAAAGCTGTACTTGA+GGG 0.469860 4_3:+41169256 Msa0641200:CDS
CTCATCACAAGAACAACATT+AGG 0.475458 4_3:-41169197 None:intergenic
GTTGTTCTTGTGATGAGCAT+TGG 0.493707 4_3:+41169203 Msa0641200:CDS
TGTTGCCGTCCTTCATGTCG+TGG 0.502055 4_3:+41169238 Msa0641200:CDS
AGGGATGCAAGGCAAGAAGT+TGG 0.502672 4_3:+41169286 Msa0641200:exon
GCTGCAGCACTTCCTCTTTG+GGG 0.514244 4_3:-41169065 None:intergenic
AAAACAAATACAATATCAAA+GGG 0.529969 4_3:-41169383 None:intergenic
ATTGTTCCTAGAAGTAAAAG+TGG 0.534496 4_3:+41169474 Msa0641200:three_prime_UTR
CTACTGCAAGCATGAGGAGA+AGG 0.536447 4_3:+41169087 Msa0641200:CDS
AGAAGGAAAACACCAGGTGG+TGG 0.545023 4_3:+41169104 Msa0641200:CDS
GTTGCCGTCCTTCATGTCGT+GGG 0.549428 4_3:+41169239 Msa0641200:CDS
TTTCAGAAAATGGCTTTAGG+TGG 0.554792 4_3:+41169035 Msa0641200:intron
GATTAATGCACACTACTACA+TGG 0.588875 4_3:+41169664 Msa0641200:three_prime_UTR
CCAGGTGGTGGAGCCTCTGG+AGG 0.593869 4_3:+41169116 Msa0641200:CDS
TTTAAGTCCAGGTGCATCGT+CGG 0.594963 4_3:-41169168 None:intergenic
AGTTCCAGCTGCTCCTCCAG+AGG 0.601644 4_3:-41169129 None:intergenic
TGTCGTTATACTTTATACAC+AGG 0.604631 4_3:+41169640 Msa0641200:three_prime_UTR
AGGGAGGCTTAAGGGATGCA+AGG 0.606445 4_3:+41169275 Msa0641200:exon
GGTGGAGGAGCTCCCCAAAG+AGG 0.606488 4_3:+41169053 Msa0641200:CDS
ACAGCTTTCCCACGACATGA+AGG 0.608814 4_3:-41169247 None:intergenic
TCGTGGGAAAGCTGTACTTG+AGG 0.624214 4_3:+41169255 Msa0641200:CDS
CTGCAGCTACTGCAAGCATG+AGG 0.624920 4_3:+41169081 Msa0641200:CDS
ATGAGGAGAAGGAAAACACC+AGG 0.632567 4_3:+41169098 Msa0641200:CDS
TTGTCATATATGGTTAGCAA+CGG 0.633828 4_3:-41169610 None:intergenic
CTTTCCCACGACATGAAGGA+CGG 0.643668 4_3:-41169243 None:intergenic
GGGAAAGCTGTACTTGAGGG+AGG 0.648270 4_3:+41169259 Msa0641200:CDS
AGGAGAAGGAAAACACCAGG+TGG 0.731216 4_3:+41169101 Msa0641200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTAATTATCTAATTTTTAAT+CGG + chr4_3:41168396-41168415 Msa0641200:intron 10.0%
!!! GTAATTATCTAATTTTTAAT+CGG + chr4_3:41168396-41168415 Msa0641200:intron 10.0%
!!! ATTTTCTGAATTTTGTTTAA+TGG + chr4_3:41168300-41168319 Msa0641200:intron 15.0%
!!! TTTTCTGAATTTTGTTTAAT+GGG + chr4_3:41168301-41168320 Msa0641200:intron 15.0%
!! AAAACAAATACAATATCAAA+GGG - chr4_3:41169386-41169405 None:intergenic 15.0%
!! AAAAACAAATACAATATCAA+AGG - chr4_3:41169387-41169406 None:intergenic 15.0%
!!! TATTACTTTTAAGTATAACA+AGG + chr4_3:41169427-41169446 Msa0641200:three_prime_UTR 15.0%
!!! ATTACTTTTAAGTATAACAA+GGG + chr4_3:41169428-41169447 Msa0641200:three_prime_UTR 15.0%
!!! ATTTTCTGAATTTTGTTTAA+TGG + chr4_3:41168300-41168319 Msa0641200:intron 15.0%
!!! TTTTCTGAATTTTGTTTAAT+GGG + chr4_3:41168301-41168320 Msa0641200:intron 15.0%
!! AAAACAAATACAATATCAAA+GGG - chr4_3:41169386-41169405 None:intergenic 15.0%
!! AAAAACAAATACAATATCAA+AGG - chr4_3:41169387-41169406 None:intergenic 15.0%
!!! TATTACTTTTAAGTATAACA+AGG + chr4_3:41169427-41169446 Msa0641200:three_prime_UTR 15.0%
!!! ATTACTTTTAAGTATAACAA+GGG + chr4_3:41169428-41169447 Msa0641200:three_prime_UTR 15.0%
!!! ATTGAGAAACTTTTGTAAAT+TGG + chr4_3:41168963-41168982 Msa0641200:intron 20.0%
!!! ATTGGAAGTTAATTTGAATT+AGG + chr4_3:41168981-41169000 Msa0641200:intron 20.0%
!!! AGTTAATTTGAATTAGGTTT+TGG + chr4_3:41168987-41169006 Msa0641200:intron 20.0%
!!! TGTATTTGTTTTTGTTCTTT+TGG + chr4_3:41169394-41169413 Msa0641200:three_prime_UTR 20.0%
!!! ATTGAGAAACTTTTGTAAAT+TGG + chr4_3:41168963-41168982 Msa0641200:intron 20.0%
!!! ATTGGAAGTTAATTTGAATT+AGG + chr4_3:41168981-41169000 Msa0641200:intron 20.0%
!!! AGTTAATTTGAATTAGGTTT+TGG + chr4_3:41168987-41169006 Msa0641200:intron 20.0%
!!! TGTATTTGTTTTTGTTCTTT+TGG + chr4_3:41169394-41169413 Msa0641200:three_prime_UTR 20.0%
! ATCTAAAAACCTTAATTGCA+TGG - chr4_3:41168362-41168381 None:intergenic 25.0%
! AATGATAAGTATCTGACAAA+GGG - chr4_3:41168539-41168558 None:intergenic 25.0%
!! ACAATTCATATCTAGTGTTT+TGG - chr4_3:41168695-41168714 None:intergenic 25.0%
! TGAACTTTCATTTCAGAAAA+TGG + chr4_3:41169025-41169044 Msa0641200:intron 25.0%
! AAAGTGAAAAACAGAAATCT+TGG + chr4_3:41169587-41169606 Msa0641200:three_prime_UTR 25.0%
! ATAAAGTATAACGACATATC+AGG - chr4_3:41169636-41169655 None:intergenic 25.0%
! ATCTAAAAACCTTAATTGCA+TGG - chr4_3:41168362-41168381 None:intergenic 25.0%
! AATGATAAGTATCTGACAAA+GGG - chr4_3:41168539-41168558 None:intergenic 25.0%
!! ACAATTCATATCTAGTGTTT+TGG - chr4_3:41168695-41168714 None:intergenic 25.0%
! TGAACTTTCATTTCAGAAAA+TGG + chr4_3:41169025-41169044 Msa0641200:intron 25.0%
! AAAGTGAAAAACAGAAATCT+TGG + chr4_3:41169587-41169606 Msa0641200:three_prime_UTR 25.0%
! ATAAAGTATAACGACATATC+AGG - chr4_3:41169636-41169655 None:intergenic 25.0%
TTACTGAGATTTGTAGGAAT+TGG - chr4_3:41168250-41168269 None:intergenic 30.0%
TTTCGAATTCCATGCAATTA+AGG + chr4_3:41168350-41168369 Msa0641200:intron 30.0%
AAAACTGTCATAACACTTCT+CGG + chr4_3:41168502-41168521 Msa0641200:intron 30.0%
CAATGATAAGTATCTGACAA+AGG - chr4_3:41168540-41168559 None:intergenic 30.0%
ATGTCGTTGTTTGATATATG+TGG + chr4_3:41168767-41168786 Msa0641200:intron 30.0%
TCATTTCAGAAAATGGCTTT+AGG + chr4_3:41169032-41169051 Msa0641200:intron 30.0%
!!! AAGAAGTTGGGTTCATTTTT+TGG + chr4_3:41169299-41169318 Msa0641200:three_prime_UTR 30.0%
ATTGTTCCTAGAAGTAAAAG+TGG + chr4_3:41169474-41169493 Msa0641200:three_prime_UTR 30.0%
!! CTTATACCACTTTTACTTCT+AGG - chr4_3:41169483-41169502 None:intergenic 30.0%
CTTTGTCAGTACTTAGTAAT+AGG + chr4_3:41169561-41169580 Msa0641200:three_prime_UTR 30.0%
TTGTCATATATGGTTAGCAA+CGG - chr4_3:41169613-41169632 None:intergenic 30.0%
! ACATATCAGGTTGTCATATA+TGG - chr4_3:41169623-41169642 None:intergenic 30.0%
TGTCGTTATACTTTATACAC+AGG + chr4_3:41169640-41169659 Msa0641200:three_prime_UTR 30.0%
TTACTGAGATTTGTAGGAAT+TGG - chr4_3:41168250-41168269 None:intergenic 30.0%
TTTCGAATTCCATGCAATTA+AGG + chr4_3:41168350-41168369 Msa0641200:intron 30.0%
AAAACTGTCATAACACTTCT+CGG + chr4_3:41168502-41168521 Msa0641200:intron 30.0%
CAATGATAAGTATCTGACAA+AGG - chr4_3:41168540-41168559 None:intergenic 30.0%
ATGTCGTTGTTTGATATATG+TGG + chr4_3:41168767-41168786 Msa0641200:intron 30.0%
TCATTTCAGAAAATGGCTTT+AGG + chr4_3:41169032-41169051 Msa0641200:intron 30.0%
!!! AAGAAGTTGGGTTCATTTTT+TGG + chr4_3:41169299-41169318 Msa0641200:three_prime_UTR 30.0%
ATTGTTCCTAGAAGTAAAAG+TGG + chr4_3:41169474-41169493 Msa0641200:three_prime_UTR 30.0%
!! CTTATACCACTTTTACTTCT+AGG - chr4_3:41169483-41169502 None:intergenic 30.0%
CTTTGTCAGTACTTAGTAAT+AGG + chr4_3:41169561-41169580 Msa0641200:three_prime_UTR 30.0%
TTGTCATATATGGTTAGCAA+CGG - chr4_3:41169613-41169632 None:intergenic 30.0%
! ACATATCAGGTTGTCATATA+TGG - chr4_3:41169623-41169642 None:intergenic 30.0%
TGTCGTTATACTTTATACAC+AGG + chr4_3:41169640-41169659 Msa0641200:three_prime_UTR 30.0%
! TTCTGGTTACTGAGATTTGT+AGG - chr4_3:41168256-41168275 None:intergenic 35.0%
GTAACCAGAATTTCTCATTC+AGG + chr4_3:41168266-41168285 Msa0641200:five_prime_UTR 35.0%
TGTACCTGAATGAGAAATTC+TGG - chr4_3:41168273-41168292 None:intergenic 35.0%
!! TTTCAGAAAATGGCTTTAGG+TGG + chr4_3:41169035-41169054 Msa0641200:intron 35.0%
!! TTAGGTGAGATTTTAAGTCC+AGG - chr4_3:41169182-41169201 None:intergenic 35.0%
CTCATCACAAGAACAACATT+AGG - chr4_3:41169200-41169219 None:intergenic 35.0%
GATTAATGCACACTACTACA+TGG + chr4_3:41169664-41169683 Msa0641200:three_prime_UTR 35.0%
! TTCTGGTTACTGAGATTTGT+AGG - chr4_3:41168256-41168275 None:intergenic 35.0%
GTAACCAGAATTTCTCATTC+AGG + chr4_3:41168266-41168285 Msa0641200:five_prime_UTR 35.0%
TGTACCTGAATGAGAAATTC+TGG - chr4_3:41168273-41168292 None:intergenic 35.0%
!! TTTCAGAAAATGGCTTTAGG+TGG + chr4_3:41169035-41169054 Msa0641200:intron 35.0%
!! TTAGGTGAGATTTTAAGTCC+AGG - chr4_3:41169182-41169201 None:intergenic 35.0%
CTCATCACAAGAACAACATT+AGG - chr4_3:41169200-41169219 None:intergenic 35.0%
GATTAATGCACACTACTACA+TGG + chr4_3:41169664-41169683 Msa0641200:three_prime_UTR 35.0%
GTCATAACACTTCTCGGATT+AGG + chr4_3:41168508-41168527 Msa0641200:intron 40.0%
GATATTGACATGTCTGCATC+TGG + chr4_3:41168649-41168668 Msa0641200:intron 40.0%
ACGTCTTATCCCACTAAGTA+AGG - chr4_3:41168797-41168816 None:intergenic 40.0%
GTTGTTCTTGTGATGAGCAT+TGG + chr4_3:41169203-41169222 Msa0641200:CDS 40.0%
GTCATAACACTTCTCGGATT+AGG + chr4_3:41168508-41168527 Msa0641200:intron 40.0%
GATATTGACATGTCTGCATC+TGG + chr4_3:41168649-41168668 Msa0641200:intron 40.0%
ACGTCTTATCCCACTAAGTA+AGG - chr4_3:41168797-41168816 None:intergenic 40.0%
GTTGTTCTTGTGATGAGCAT+TGG + chr4_3:41169203-41169222 Msa0641200:CDS 40.0%
TTGATCTTAAACCGCGACTG+CGG - chr4_3:41168484-41168503 None:intergenic 45.0%
ATGTGGCTGACCTTACTTAG+TGG + chr4_3:41168784-41168803 Msa0641200:intron 45.0%
TGTGGCTGACCTTACTTAGT+GGG + chr4_3:41168785-41168804 Msa0641200:intron 45.0%
!! CAGAAAATGGCTTTAGGTGG+AGG + chr4_3:41169038-41169057 Msa0641200:intron 45.0%
ATGAGGAGAAGGAAAACACC+AGG + chr4_3:41169098-41169117 Msa0641200:CDS 45.0%
TTTAAGTCCAGGTGCATCGT+CGG - chr4_3:41169171-41169190 None:intergenic 45.0%
TGTACTTGAGGGAGGCTTAA+GGG + chr4_3:41169267-41169286 Msa0641200:CDS 45.0%
TTGATCTTAAACCGCGACTG+CGG - chr4_3:41168484-41168503 None:intergenic 45.0%
ATGTGGCTGACCTTACTTAG+TGG + chr4_3:41168784-41168803 Msa0641200:intron 45.0%
TGTGGCTGACCTTACTTAGT+GGG + chr4_3:41168785-41168804 Msa0641200:intron 45.0%
!! CAGAAAATGGCTTTAGGTGG+AGG + chr4_3:41169038-41169057 Msa0641200:intron 45.0%
ATGAGGAGAAGGAAAACACC+AGG + chr4_3:41169098-41169117 Msa0641200:CDS 45.0%
TTTAAGTCCAGGTGCATCGT+CGG - chr4_3:41169171-41169190 None:intergenic 45.0%
TGTACTTGAGGGAGGCTTAA+GGG + chr4_3:41169267-41169286 Msa0641200:CDS 45.0%
TCGTGTACTCGTCGTGTTCA+CGG - chr4_3:41168575-41168594 None:intergenic 50.0%
AGCTGCAGCACTTCCTCTTT+GGG - chr4_3:41169069-41169088 None:intergenic 50.0%
TAGCTGCAGCACTTCCTCTT+TGG - chr4_3:41169070-41169089 None:intergenic 50.0%
CTACTGCAAGCATGAGGAGA+AGG + chr4_3:41169087-41169106 Msa0641200:CDS 50.0%
AGGAGAAGGAAAACACCAGG+TGG + chr4_3:41169101-41169120 Msa0641200:CDS 50.0%
AGAAGGAAAACACCAGGTGG+TGG + chr4_3:41169104-41169123 Msa0641200:CDS 50.0%
! TTTTACACCGACGATGCACC+TGG + chr4_3:41169161-41169180 Msa0641200:CDS 50.0%
CTTTCCCACGACATGAAGGA+CGG - chr4_3:41169246-41169265 None:intergenic 50.0%
ACAGCTTTCCCACGACATGA+AGG - chr4_3:41169250-41169269 None:intergenic 50.0%
TCGTGGGAAAGCTGTACTTG+AGG + chr4_3:41169255-41169274 Msa0641200:CDS 50.0%
CGTGGGAAAGCTGTACTTGA+GGG + chr4_3:41169256-41169275 Msa0641200:CDS 50.0%
CTGTACTTGAGGGAGGCTTA+AGG + chr4_3:41169266-41169285 Msa0641200:CDS 50.0%
AGGGATGCAAGGCAAGAAGT+TGG + chr4_3:41169286-41169305 Msa0641200:exon 50.0%
GGGATGCAAGGCAAGAAGTT+GGG + chr4_3:41169287-41169306 Msa0641200:three_prime_UTR 50.0%
TCGTGTACTCGTCGTGTTCA+CGG - chr4_3:41168575-41168594 None:intergenic 50.0%
AGCTGCAGCACTTCCTCTTT+GGG - chr4_3:41169069-41169088 None:intergenic 50.0%
TAGCTGCAGCACTTCCTCTT+TGG - chr4_3:41169070-41169089 None:intergenic 50.0%
CTACTGCAAGCATGAGGAGA+AGG + chr4_3:41169087-41169106 Msa0641200:CDS 50.0%
AGGAGAAGGAAAACACCAGG+TGG + chr4_3:41169101-41169120 Msa0641200:CDS 50.0%
AGAAGGAAAACACCAGGTGG+TGG + chr4_3:41169104-41169123 Msa0641200:CDS 50.0%
! TTTTACACCGACGATGCACC+TGG + chr4_3:41169161-41169180 Msa0641200:CDS 50.0%
CTTTCCCACGACATGAAGGA+CGG - chr4_3:41169246-41169265 None:intergenic 50.0%
ACAGCTTTCCCACGACATGA+AGG - chr4_3:41169250-41169269 None:intergenic 50.0%
TCGTGGGAAAGCTGTACTTG+AGG + chr4_3:41169255-41169274 Msa0641200:CDS 50.0%
CGTGGGAAAGCTGTACTTGA+GGG + chr4_3:41169256-41169275 Msa0641200:CDS 50.0%
CTGTACTTGAGGGAGGCTTA+AGG + chr4_3:41169266-41169285 Msa0641200:CDS 50.0%
AGGGATGCAAGGCAAGAAGT+TGG + chr4_3:41169286-41169305 Msa0641200:exon 50.0%
GGGATGCAAGGCAAGAAGTT+GGG + chr4_3:41169287-41169306 Msa0641200:three_prime_UTR 50.0%
ACTCGTCGTGTTCACGGTGT+TGG - chr4_3:41168569-41168588 None:intergenic 55.0%
GCTGCAGCACTTCCTCTTTG+GGG - chr4_3:41169068-41169087 None:intergenic 55.0%
CTGCAGCTACTGCAAGCATG+AGG + chr4_3:41169081-41169100 Msa0641200:CDS 55.0%
TGTTGCCGTCCTTCATGTCG+TGG + chr4_3:41169238-41169257 Msa0641200:CDS 55.0%
GTTGCCGTCCTTCATGTCGT+GGG + chr4_3:41169239-41169258 Msa0641200:CDS 55.0%
GGGAAAGCTGTACTTGAGGG+AGG + chr4_3:41169259-41169278 Msa0641200:CDS 55.0%
AGGGAGGCTTAAGGGATGCA+AGG + chr4_3:41169275-41169294 Msa0641200:exon 55.0%
ACTCGTCGTGTTCACGGTGT+TGG - chr4_3:41168569-41168588 None:intergenic 55.0%
GCTGCAGCACTTCCTCTTTG+GGG - chr4_3:41169068-41169087 None:intergenic 55.0%
CTGCAGCTACTGCAAGCATG+AGG + chr4_3:41169081-41169100 Msa0641200:CDS 55.0%
TGTTGCCGTCCTTCATGTCG+TGG + chr4_3:41169238-41169257 Msa0641200:CDS 55.0%
GTTGCCGTCCTTCATGTCGT+GGG + chr4_3:41169239-41169258 Msa0641200:CDS 55.0%
GGGAAAGCTGTACTTGAGGG+AGG + chr4_3:41169259-41169278 Msa0641200:CDS 55.0%
AGGGAGGCTTAAGGGATGCA+AGG + chr4_3:41169275-41169294 Msa0641200:exon 55.0%
CTTAAACCGCGACTGCGGCA+GGG - chr4_3:41168479-41168498 None:intergenic 60.0%
TCTTAAACCGCGACTGCGGC+AGG - chr4_3:41168480-41168499 None:intergenic 60.0%
AGTTCCAGCTGCTCCTCCAG+AGG - chr4_3:41169132-41169151 None:intergenic 60.0%
CTTAAACCGCGACTGCGGCA+GGG - chr4_3:41168479-41168498 None:intergenic 60.0%
TCTTAAACCGCGACTGCGGC+AGG - chr4_3:41168480-41168499 None:intergenic 60.0%
AGTTCCAGCTGCTCCTCCAG+AGG - chr4_3:41169132-41169151 None:intergenic 60.0%
GGTGGAGGAGCTCCCCAAAG+AGG + chr4_3:41169053-41169072 Msa0641200:CDS 65.0%
!! ACACCAGGTGGTGGAGCCTC+TGG + chr4_3:41169113-41169132 Msa0641200:CDS 65.0%
GGTGGAGGAGCTCCCCAAAG+AGG + chr4_3:41169053-41169072 Msa0641200:CDS 65.0%
!! ACACCAGGTGGTGGAGCCTC+TGG + chr4_3:41169113-41169132 Msa0641200:CDS 65.0%
ACGTGTCCCTGCCGCAGTCG+CGG + chr4_3:41168470-41168489 Msa0641200:intron 70.0%
CCTCCAGAGGCTCCACCACC+TGG - chr4_3:41169119-41169138 None:intergenic 70.0%
!! CCAGGTGGTGGAGCCTCTGG+AGG + chr4_3:41169116-41169135 Msa0641200:CDS 70.0%
! GGAGCCTCTGGAGGAGCAGC+TGG + chr4_3:41169125-41169144 Msa0641200:CDS 70.0%
ACGTGTCCCTGCCGCAGTCG+CGG + chr4_3:41168470-41168489 Msa0641200:intron 70.0%
CCTCCAGAGGCTCCACCACC+TGG - chr4_3:41169119-41169138 None:intergenic 70.0%
!! CCAGGTGGTGGAGCCTCTGG+AGG + chr4_3:41169116-41169135 Msa0641200:CDS 70.0%
! GGAGCCTCTGGAGGAGCAGC+TGG + chr4_3:41169125-41169144 Msa0641200:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 41168184 41169702 41168184 ID=Msa0641200;Name=Msa0641200
chr4_3 mRNA 41168184 41169702 41168184 ID=Msa0641200-mRNA-1;Parent=Msa0641200;Name=Msa0641200-mRNA-1;_AED=0.00;_eAED=0.00;_QI=104|0|0.5|1|0|0.5|2|416|80
chr4_3 exon 41168184 41168287 41168184 ID=Msa0641200-mRNA-1:exon:9244;Parent=Msa0641200-mRNA-1
chr4_3 exon 41169044 41169702 41169044 ID=Msa0641200-mRNA-1:exon:9245;Parent=Msa0641200-mRNA-1
chr4_3 five_prime_UTR 41168184 41168287 41168184 ID=Msa0641200-mRNA-1:five_prime_utr;Parent=Msa0641200-mRNA-1
chr4_3 CDS 41169044 41169286 41169044 ID=Msa0641200-mRNA-1:cds;Parent=Msa0641200-mRNA-1
chr4_3 three_prime_UTR 41169287 41169702 41169287 ID=Msa0641200-mRNA-1:three_prime_utr;Parent=Msa0641200-mRNA-1
Gene Sequence

>Msa0641200

ATGGCTTTAGGTGGAGGAGCTCCCCAAAGAGGAAGTGCTGCAGCTACTGCAAGCATGAGGAGAAGGAAAACACCAGGTGGTGGAGCCTCTGGAGGAGCAGCTGGAACTATGCTTCAATTTTACACCGACGATGCACCTGGACTTAAAATCTCACCTAATGTTGTTCTTGTGATGAGCATTGGCTTTATAGCATTTGTTGCCGTCCTTCATGTCGTGGGAAAGCTGTACTTGAGGGAGGCTTAA
Protein sequence

>Msa0641200

MALGGGAPQRGSAAATASMRRRKTPGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVVGKLYLREA*