Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643200 | XP_003606402.1 | 99.016 | 305 | 3 | 0 | 86 | 390 | 91 | 395 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0643200 | Msa0682860 | 0.945803 | 1.539522e-104 | -8.615850e-47 |
| Msa0643200 | Msa0689830 | 0.800577 | 1.350234e-48 | -8.615850e-47 |
| Msa0547340 | Msa0643200 | 0.934382 | 4.401473e-96 | -8.615850e-47 |
| Msa0602070 | Msa0643200 | 0.940633 | 1.671907e-100 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643200 | MtrunA17_Chr4g0029291 | 99.016 | 305 | 3 | 0 | 86 | 390 | 91 | 395 | 0.0 | 616 |
| Msa0643200 | MtrunA17_Chr4g0029271 | 82.864 | 391 | 61 | 2 | 1 | 390 | 1 | 386 | 0.0 | 594 |
| Msa0643200 | MtrunA17_Chr2g0318341 | 46.875 | 288 | 146 | 4 | 107 | 390 | 38 | 322 | 7.79e-96 | 290 |
| Msa0643200 | MtrunA17_Chr2g0318311 | 47.222 | 288 | 145 | 4 | 107 | 390 | 38 | 322 | 1.94e-95 | 288 |
| Msa0643200 | MtrunA17_Chr8g0360691 | 46.154 | 273 | 142 | 3 | 107 | 377 | 38 | 307 | 8.81e-88 | 269 |
| Msa0643200 | MtrunA17_Chr2g0292811 | 42.164 | 268 | 136 | 3 | 110 | 377 | 46 | 294 | 9.72e-76 | 238 |
| Msa0643200 | MtrunA17_Chr2g0287361 | 39.792 | 289 | 151 | 5 | 93 | 377 | 26 | 295 | 3.69e-75 | 236 |
| Msa0643200 | MtrunA17_Chr2g0292801 | 43.284 | 268 | 133 | 3 | 110 | 377 | 309 | 557 | 2.44e-74 | 242 |
| Msa0643200 | MtrunA17_Chr2g0292821 | 42.910 | 268 | 134 | 3 | 110 | 377 | 309 | 557 | 5.02e-73 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643200 | AT5G60530.1 | 67.797 | 295 | 93 | 2 | 86 | 378 | 135 | 429 | 9.64e-157 | 449 |
| Msa0643200 | AT5G60520.1 | 67.857 | 308 | 98 | 1 | 72 | 378 | 21 | 328 | 8.15e-153 | 435 |
| Msa0643200 | AT4G27400.1 | 44.211 | 285 | 153 | 4 | 106 | 387 | 35 | 316 | 9.49e-91 | 277 |
| Msa0643200 | AT5G54370.1 | 42.905 | 296 | 160 | 5 | 95 | 387 | 20 | 309 | 7.57e-89 | 272 |
| Msa0643200 | AT1G54890.1 | 43.056 | 288 | 157 | 5 | 95 | 377 | 26 | 311 | 1.40e-85 | 264 |
| Msa0643200 | AT3G19430.1 | 42.958 | 284 | 144 | 5 | 97 | 377 | 258 | 526 | 2.63e-76 | 246 |
| Msa0643200 | AT3G19430.2 | 42.958 | 284 | 144 | 5 | 97 | 377 | 281 | 549 | 3.64e-76 | 246 |
Find 107 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACTCTCTTACAGTAAAA+TGG | 0.185746 | 4_3:+45717911 | Msa0643200:CDS |
| TTATCCTTCTTGTTCTTCTT+TGG | 0.195002 | 4_3:-45717125 | None:intergenic |
| GAATTCATCGTCTGAAACTA+TGG | 0.242755 | 4_3:-45717749 | None:intergenic |
| TTTCCACAATCACTTCTCTT+TGG | 0.271483 | 4_3:-45717993 | None:intergenic |
| TTCCTTTGTTTACACTCTTC+CGG | 0.316690 | 4_3:-45717101 | None:intergenic |
| AGTGTTAGAGTGACGGTTTC+CGG | 0.325145 | 4_3:+45718033 | Msa0643200:CDS |
| CGATGAAGTGTGCGTTGATT+TGG | 0.331268 | 4_3:-45717771 | None:intergenic |
| AGGCAAAGGAAAGGGGAAAA+AGG | 0.348798 | 4_3:+45716974 | Msa0643200:CDS |
| CATTGCCATTACCATTTCCT+TGG | 0.358834 | 4_3:-45716827 | None:intergenic |
| TATGGCGAAGTTTCCTCCTT+TGG | 0.367101 | 4_3:-45717731 | None:intergenic |
| ATTCCATTGAGTTACTCTAT+TGG | 0.373593 | 4_3:-45717881 | None:intergenic |
| TTGAAAAGAGTGATGGAGTT+TGG | 0.380596 | 4_3:-45718284 | None:intergenic |
| GGTTTCCGGTTTGCTTGAAA+TGG | 0.386604 | 4_3:+45718047 | Msa0643200:CDS |
| GACATAAGGGTAAGGCCTAT+TGG | 0.392194 | 4_3:+45718069 | Msa0643200:CDS |
| AATCCTACAGATTCTATTGA+AGG | 0.405188 | 4_3:+45718174 | Msa0643200:CDS |
| AAAGACAAAGGCAAAGGAAA+GGG | 0.406086 | 4_3:+45716966 | Msa0643200:CDS |
| GAGCCGTAGCCATCACAATT+TGG | 0.411447 | 4_3:-45717649 | None:intergenic |
| AAGAAGAACAAGAAGGATAA+AGG | 0.412069 | 4_3:+45717128 | Msa0643200:CDS |
| TTTCAAGACACTTGTGTGTC+CGG | 0.420772 | 4_3:+45717082 | Msa0643200:CDS |
| CTTGGCTAGTGGAAGGCCTC+TGG | 0.441264 | 4_3:-45718329 | None:intergenic |
| CTTCATCGGTACTCGACCTC+AGG | 0.443542 | 4_3:+45717786 | Msa0643200:CDS |
| GGTAAGGCCTATTGGAGAAA+AGG | 0.448306 | 4_3:+45718077 | Msa0643200:CDS |
| GTTTGCTTGAAATGGACATA+AGG | 0.452921 | 4_3:+45718055 | Msa0643200:CDS |
| CAACAACATGCAAACTCTGC+AGG | 0.455560 | 4_3:+45718304 | Msa0643200:CDS |
| AAGCTTGCCAGCTCTTCAAT+CGG | 0.459439 | 4_3:+45717019 | Msa0643200:CDS |
| AAGCATCATCTGATGGCAAT+TGG | 0.461439 | 4_3:-45718119 | None:intergenic |
| TCCTGTCCCGATTGAAGAGC+TGG | 0.462032 | 4_3:-45717026 | None:intergenic |
| TGACTCTCTTACAGTAAAAT+GGG | 0.465803 | 4_3:+45717912 | Msa0643200:CDS |
| CGGTAACAATGGCAACGGTA+AGG | 0.466846 | 4_3:+45716890 | Msa0643200:CDS |
| ATTGCTCAAGGCCAAGGAAA+TGG | 0.467146 | 4_3:+45716816 | Msa0643200:CDS |
| TATGTCCATTTCAAGCAAAC+CGG | 0.477542 | 4_3:-45718052 | None:intergenic |
| AGGCGTTGCTATGCCGATGA+TGG | 0.478306 | 4_3:+45718245 | Msa0643200:CDS |
| AGTTTCCTCCTTTGGCTCCA+TGG | 0.483265 | 4_3:-45717723 | None:intergenic |
| TTTGCTTGAAATGGACATAA+GGG | 0.483863 | 4_3:+45718056 | Msa0643200:CDS |
| TACGATCCTCGCTTTGTTGG+TGG | 0.487215 | 4_3:+45717679 | Msa0643200:CDS |
| TTAGTAACTATTCCTTCTGA+TGG | 0.487513 | 4_3:+45717943 | Msa0643200:CDS |
| TGTTACGATCCTCGCTTTGT+TGG | 0.488383 | 4_3:+45717676 | Msa0643200:CDS |
| AGTATTGAGCAATTAATCCT+TGG | 0.489193 | 4_3:-45718347 | None:intergenic |
| AGAGAGTTCACCAAGATGGC+TGG | 0.489242 | 4_3:+45716735 | None:intergenic |
| AGCTTGCCAGCTCTTCAATC+GGG | 0.489857 | 4_3:+45717020 | Msa0643200:CDS |
| GTTGCCACTTGACTTCCATT+CGG | 0.489934 | 4_3:-45717971 | None:intergenic |
| GGTAACAATGGCAACGGTAA+TGG | 0.490289 | 4_3:+45716861 | Msa0643200:CDS |
| CCTCGCTTTGTTGGTGGTGA+CGG | 0.491282 | 4_3:+45717685 | Msa0643200:CDS |
| CATGTTGTTGAAAAGAGTGA+TGG | 0.501148 | 4_3:-45718291 | None:intergenic |
| ATAGCAACGCCTCTCTTGAC+AGG | 0.501342 | 4_3:-45718234 | None:intergenic |
| CAAAGACAAAGGCAAAGGAA+AGG | 0.504829 | 4_3:+45716965 | Msa0643200:CDS |
| GCCAGCTCTTCAATCGGGAC+AGG | 0.506018 | 4_3:+45717025 | Msa0643200:CDS |
| TTGTCTTCCCCTCCCATCAT+CGG | 0.516690 | 4_3:-45718258 | None:intergenic |
| TGCTATGCCGATGATGGGAG+GGG | 0.520495 | 4_3:+45718251 | Msa0643200:CDS |
| AGCAATTAATCCTTGGCTAG+TGG | 0.522968 | 4_3:-45718340 | None:intergenic |
| TTGACAGGACTAACATAACT+TGG | 0.528654 | 4_3:-45718219 | None:intergenic |
| TTCTACTTCCATGGAGCCAA+AGG | 0.530261 | 4_3:+45717715 | Msa0643200:CDS |
| CAGCCAATAGAGTAACTCAA+TGG | 0.535035 | 4_3:+45717878 | Msa0643200:CDS |
| CAAGGCCAAGGAAATGGTAA+TGG | 0.535225 | 4_3:+45716822 | Msa0643200:CDS |
| GCTGTCATTGCTCAAGGCCA+AGG | 0.536607 | 4_3:+45716810 | Msa0643200:CDS |
| CAACGGTAAGGGAAATGATA+AGG | 0.536819 | 4_3:+45716902 | Msa0643200:CDS |
| CCAAGATGGCTGGAAGAAAG+TGG | 0.542641 | 4_3:+45716745 | None:intergenic |
| AATGGCAATGGCAATGATAA+CGG | 0.544965 | 4_3:+45716840 | Msa0643200:CDS |
| GGCGTTGCTATGCCGATGAT+GGG | 0.546171 | 4_3:+45718246 | Msa0643200:CDS |
| TTGCTATGCCGATGATGGGA+GGG | 0.557875 | 4_3:+45718250 | Msa0643200:CDS |
| CAGAGGCCTTCCACTAGCCA+AGG | 0.567255 | 4_3:+45718330 | Msa0643200:CDS |
| AAGACAAAGGCAAAGGAAAG+GGG | 0.568570 | 4_3:+45716967 | Msa0643200:CDS |
| GGTAACAATGGCAACGGTAA+GGG | 0.569494 | 4_3:+45716891 | Msa0643200:CDS |
| CAAATCAACGCACACTTCAT+CGG | 0.574077 | 4_3:+45717772 | Msa0643200:CDS |
| GCAAACTCTGCAGGTTCCAG+AGG | 0.576301 | 4_3:+45718313 | Msa0643200:CDS |
| ATGGAAGCTGTCATTGCTCA+AGG | 0.577049 | 4_3:+45716804 | Msa0643200:CDS |
| AAGAAAGTGGAGCATCTTGG+TGG | 0.578600 | 4_3:+45716758 | Msa0643200:CDS |
| GAAGGACTCGCGATTACACA+TGG | 0.579448 | 4_3:+45717809 | Msa0643200:CDS |
| TGTGAACTTACACTTGCAAG+TGG | 0.579594 | 4_3:-45717180 | None:intergenic |
| GACAAAGACGACAAAGACAA+AGG | 0.583327 | 4_3:+45716954 | Msa0643200:CDS |
| CAAGGAAATGGTAATGGCAA+TGG | 0.586689 | 4_3:+45716828 | Msa0643200:CDS |
| CAACCAAAGAGAAGTGATTG+TGG | 0.588758 | 4_3:+45717990 | Msa0643200:CDS |
| GGCAATGATAACGGTAACAA+TGG | 0.590008 | 4_3:+45716849 | Msa0643200:CDS |
| TGGAAGAAAGTGGAGCATCT+TGG | 0.590363 | 4_3:+45716755 | Msa0643200:CDS |
| AGACCAAATTGTGATGGCTA+CGG | 0.590902 | 4_3:+45717646 | Msa0643200:CDS |
| TTGAAATGGACATAAGGGTA+AGG | 0.592556 | 4_3:+45718061 | Msa0643200:CDS |
| GGTGTGATGTTCTACTTCCA+TGG | 0.592688 | 4_3:+45717706 | Msa0643200:CDS |
| GACGACAAAGACAAAGGCAA+AGG | 0.593756 | 4_3:+45716960 | Msa0643200:CDS |
| CTTCAATCGGGACAGGAACG+AGG | 0.594901 | 4_3:+45717032 | Msa0643200:CDS |
| ACTCCTTCAATAGAATCTGT+AGG | 0.597663 | 4_3:-45718177 | None:intergenic |
| GAAGCCAAAGAAGAACAAGA+AGG | 0.599717 | 4_3:+45717121 | Msa0643200:CDS |
| CATTCGGCATCTCCATCAGA+AGG | 0.601517 | 4_3:-45717955 | None:intergenic |
| CTTCTGATGGAGATGCCGAA+TGG | 0.602970 | 4_3:+45717956 | Msa0643200:CDS |
| TGCAGACAGTGTTAGAGTGA+CGG | 0.603754 | 4_3:+45718026 | Msa0643200:CDS |
| AATGGTAACAACGGTAACAA+TGG | 0.605001 | 4_3:+45716879 | Msa0643200:CDS |
| GTTAGAAGACCAAATTGTGA+TGG | 0.607905 | 4_3:+45717640 | Msa0643200:intron |
| TGAGCAAAAGCATCATCTGA+TGG | 0.608641 | 4_3:-45718126 | None:intergenic |
| AAATGATAAGGACGAAGGCA+AGG | 0.611935 | 4_3:+45716914 | Msa0643200:CDS |
| GTTGCTATGCCGATGATGGG+AGG | 0.614523 | 4_3:+45718249 | Msa0643200:CDS |
| ATTAATCCTTGGCTAGTGGA+AGG | 0.617460 | 4_3:-45718336 | None:intergenic |
| TACTTCCATGGAGCCAAAGG+AGG | 0.618849 | 4_3:+45717718 | Msa0643200:CDS |
| AAGGACGAAGGCAAGGACAA+AGG | 0.625848 | 4_3:+45716921 | Msa0643200:CDS |
| GATAACGGTAACAATGGCAA+CGG | 0.627056 | 4_3:+45716855 | Msa0643200:CDS |
| AACAACGGTAACAATGGCAA+CGG | 0.628721 | 4_3:+45716885 | Msa0643200:CDS |
| TTCATCGGTACTCGACCTCA+GGG | 0.629361 | 4_3:+45717787 | Msa0643200:CDS |
| TATTGGAGAAAAGGAAAACA+AGG | 0.632095 | 4_3:+45718086 | Msa0643200:CDS |
| TATGTTAGTCCTGTCAAGAG+AGG | 0.633793 | 4_3:+45718225 | Msa0643200:CDS |
| GGCAACGGTAATGGTAACAA+CGG | 0.636737 | 4_3:+45716870 | Msa0643200:CDS |
| TCGGTACTCGACCTCAGGGA+AGG | 0.642030 | 4_3:+45717791 | Msa0643200:CDS |
| TTCAATCGGGACAGGAACGA+GGG | 0.650568 | 4_3:+45717033 | Msa0643200:CDS |
| TCTCTTACAGTAAAATGGGA+CGG | 0.652194 | 4_3:+45717916 | Msa0643200:CDS |
| CCGTCACCACCAACAAAGCG+AGG | 0.670633 | 4_3:-45717685 | None:intergenic |
| GATGCCGAATGGAAGTCAAG+TGG | 0.682123 | 4_3:+45717967 | Msa0643200:CDS |
| AAGGGAAATGATAAGGACGA+AGG | 0.689947 | 4_3:+45716909 | Msa0643200:CDS |
| TAATCGCGAGTCCTTCCCTG+AGG | 0.723910 | 4_3:-45717802 | None:intergenic |
| AAGGACTCGCGATTACACAT+GGG | 0.725962 | 4_3:+45717810 | Msa0643200:CDS |
| GTCCGGAAGAGTGTAAACAA+AGG | 0.729113 | 4_3:+45717099 | Msa0643200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATCTATCTATATTTATATT+TGG | + | chr4_3:45717201-45717220 | Msa0643200:intron | 15.0% |
| !!! | TGTATATAAGAAGTATTAAA+TGG | - | chr4_3:45717438-45717457 | None:intergenic | 15.0% |
| !! | CATCTATCTATATTTATATT+TGG | + | chr4_3:45717201-45717220 | Msa0643200:intron | 15.0% |
| !!! | TGTATATAAGAAGTATTAAA+TGG | - | chr4_3:45717438-45717457 | None:intergenic | 15.0% |
| !! | ATTTAATTAGATATGATTGC+AGG | + | chr4_3:45717467-45717486 | Msa0643200:intron | 20.0% |
| !!! | ACAGTGTAAATTTTATTAAG+TGG | + | chr4_3:45717521-45717540 | Msa0643200:intron | 20.0% |
| !! | ATTTAATTAGATATGATTGC+AGG | + | chr4_3:45717467-45717486 | Msa0643200:intron | 20.0% |
| !!! | ACAGTGTAAATTTTATTAAG+TGG | + | chr4_3:45717521-45717540 | Msa0643200:intron | 20.0% |
| ! | AGAGATGAGTAAGATAAAAA+AGG | - | chr4_3:45716784-45716803 | None:intergenic | 25.0% |
| !! | TTTTATCTTACTCATCTCTA+TGG | + | chr4_3:45716785-45716804 | Msa0643200:CDS | 25.0% |
| !! | ATGTAGATTTTGTCTATGAT+AGG | + | chr4_3:45717385-45717404 | Msa0643200:intron | 25.0% |
| !! | TGTAGATTTTGTCTATGATA+GGG | + | chr4_3:45717386-45717405 | Msa0643200:intron | 25.0% |
| ! | AGAGATGAGTAAGATAAAAA+AGG | - | chr4_3:45716784-45716803 | None:intergenic | 25.0% |
| !! | TTTTATCTTACTCATCTCTA+TGG | + | chr4_3:45716785-45716804 | Msa0643200:CDS | 25.0% |
| !! | ATGTAGATTTTGTCTATGAT+AGG | + | chr4_3:45717385-45717404 | Msa0643200:intron | 25.0% |
| !! | TGTAGATTTTGTCTATGATA+GGG | + | chr4_3:45717386-45717405 | Msa0643200:intron | 25.0% |
| ! | AATGACAAGTATTTTGTGCT+TGG | - | chr4_3:45717064-45717083 | None:intergenic | 30.0% |
| TTATCCTTCTTGTTCTTCTT+TGG | - | chr4_3:45717128-45717147 | None:intergenic | 30.0% | |
| AAGAAGAACAAGAAGGATAA+AGG | + | chr4_3:45717128-45717147 | Msa0643200:CDS | 30.0% | |
| TAATACTTGATCTATACCGT+TGG | + | chr4_3:45717234-45717253 | Msa0643200:intron | 30.0% | |
| ! | CATGGTCCAACTTTATATTT+TGG | + | chr4_3:45717274-45717293 | Msa0643200:intron | 30.0% |
| TCAGGTCCAAAATATAAAGT+TGG | - | chr4_3:45717283-45717302 | None:intergenic | 30.0% | |
| TGGATCATCATAAGATAAGA+TGG | - | chr4_3:45717316-45717335 | None:intergenic | 30.0% | |
| TATGAAATCTGATTAGACGA+CGG | + | chr4_3:45717550-45717569 | Msa0643200:intron | 30.0% | |
| ATTCCATTGAGTTACTCTAT+TGG | - | chr4_3:45717884-45717903 | None:intergenic | 30.0% | |
| TTGACTCTCTTACAGTAAAA+TGG | + | chr4_3:45717911-45717930 | Msa0643200:CDS | 30.0% | |
| TGACTCTCTTACAGTAAAAT+GGG | + | chr4_3:45717912-45717931 | Msa0643200:CDS | 30.0% | |
| TTAGTAACTATTCCTTCTGA+TGG | + | chr4_3:45717943-45717962 | Msa0643200:CDS | 30.0% | |
| TTTGCTTGAAATGGACATAA+GGG | + | chr4_3:45718056-45718075 | Msa0643200:CDS | 30.0% | |
| ! | TTGTTTTCCTTTTCTCCAAT+AGG | - | chr4_3:45718087-45718106 | None:intergenic | 30.0% |
| TATTGGAGAAAAGGAAAACA+AGG | + | chr4_3:45718086-45718105 | Msa0643200:CDS | 30.0% | |
| AATCCTACAGATTCTATTGA+AGG | + | chr4_3:45718174-45718193 | Msa0643200:CDS | 30.0% | |
| ! | GATTCTATTGAAGGAGTTTT+AGG | + | chr4_3:45718183-45718202 | Msa0643200:CDS | 30.0% |
| !!! | GAGTTTTAGGTCAAACTTAT+AGG | + | chr4_3:45718196-45718215 | Msa0643200:CDS | 30.0% |
| ! | AGTATTGAGCAATTAATCCT+TGG | - | chr4_3:45718350-45718369 | None:intergenic | 30.0% |
| ! | AATGACAAGTATTTTGTGCT+TGG | - | chr4_3:45717064-45717083 | None:intergenic | 30.0% |
| TTATCCTTCTTGTTCTTCTT+TGG | - | chr4_3:45717128-45717147 | None:intergenic | 30.0% | |
| AAGAAGAACAAGAAGGATAA+AGG | + | chr4_3:45717128-45717147 | Msa0643200:CDS | 30.0% | |
| TAATACTTGATCTATACCGT+TGG | + | chr4_3:45717234-45717253 | Msa0643200:intron | 30.0% | |
| ! | CATGGTCCAACTTTATATTT+TGG | + | chr4_3:45717274-45717293 | Msa0643200:intron | 30.0% |
| TCAGGTCCAAAATATAAAGT+TGG | - | chr4_3:45717283-45717302 | None:intergenic | 30.0% | |
| TGGATCATCATAAGATAAGA+TGG | - | chr4_3:45717316-45717335 | None:intergenic | 30.0% | |
| TATGAAATCTGATTAGACGA+CGG | + | chr4_3:45717550-45717569 | Msa0643200:intron | 30.0% | |
| ATTCCATTGAGTTACTCTAT+TGG | - | chr4_3:45717884-45717903 | None:intergenic | 30.0% | |
| TTGACTCTCTTACAGTAAAA+TGG | + | chr4_3:45717911-45717930 | Msa0643200:CDS | 30.0% | |
| TGACTCTCTTACAGTAAAAT+GGG | + | chr4_3:45717912-45717931 | Msa0643200:CDS | 30.0% | |
| TTAGTAACTATTCCTTCTGA+TGG | + | chr4_3:45717943-45717962 | Msa0643200:CDS | 30.0% | |
| TTTGCTTGAAATGGACATAA+GGG | + | chr4_3:45718056-45718075 | Msa0643200:CDS | 30.0% | |
| ! | TTGTTTTCCTTTTCTCCAAT+AGG | - | chr4_3:45718087-45718106 | None:intergenic | 30.0% |
| TATTGGAGAAAAGGAAAACA+AGG | + | chr4_3:45718086-45718105 | Msa0643200:CDS | 30.0% | |
| AATCCTACAGATTCTATTGA+AGG | + | chr4_3:45718174-45718193 | Msa0643200:CDS | 30.0% | |
| ! | GATTCTATTGAAGGAGTTTT+AGG | + | chr4_3:45718183-45718202 | Msa0643200:CDS | 30.0% |
| !!! | GAGTTTTAGGTCAAACTTAT+AGG | + | chr4_3:45718196-45718215 | Msa0643200:CDS | 30.0% |
| ! | AGTATTGAGCAATTAATCCT+TGG | - | chr4_3:45718350-45718369 | None:intergenic | 30.0% |
| AATGGCAATGGCAATGATAA+CGG | + | chr4_3:45716840-45716859 | Msa0643200:CDS | 35.0% | |
| AATGGTAACAACGGTAACAA+TGG | + | chr4_3:45716879-45716898 | Msa0643200:CDS | 35.0% | |
| AAAGACAAAGGCAAAGGAAA+GGG | + | chr4_3:45716966-45716985 | Msa0643200:CDS | 35.0% | |
| ! | TGGCAAGCTTTCATATTTTG+AGG | - | chr4_3:45717009-45717028 | None:intergenic | 35.0% |
| ! | TTCCTTTGTTTACACTCTTC+CGG | - | chr4_3:45717104-45717123 | None:intergenic | 35.0% |
| ATCGTCTGATCTTAATCCAA+CGG | - | chr4_3:45717253-45717272 | None:intergenic | 35.0% | |
| !! | ATTAAATGGACTAGCATGAG+AGG | - | chr4_3:45717424-45717443 | None:intergenic | 35.0% |
| GTTAGAAGACCAAATTGTGA+TGG | + | chr4_3:45717640-45717659 | Msa0643200:intron | 35.0% | |
| ! | GAATTCATCGTCTGAAACTA+TGG | - | chr4_3:45717752-45717771 | None:intergenic | 35.0% |
| TCTCTTACAGTAAAATGGGA+CGG | + | chr4_3:45717916-45717935 | Msa0643200:CDS | 35.0% | |
| TTTCCACAATCACTTCTCTT+TGG | - | chr4_3:45717996-45718015 | None:intergenic | 35.0% | |
| TATGTCCATTTCAAGCAAAC+CGG | - | chr4_3:45718055-45718074 | None:intergenic | 35.0% | |
| GTTTGCTTGAAATGGACATA+AGG | + | chr4_3:45718055-45718074 | Msa0643200:CDS | 35.0% | |
| TTGAAATGGACATAAGGGTA+AGG | + | chr4_3:45718061-45718080 | Msa0643200:CDS | 35.0% | |
| ! | AGATGATGCTTTTGCTCATT+TGG | + | chr4_3:45718131-45718150 | Msa0643200:CDS | 35.0% |
| ACTCCTTCAATAGAATCTGT+AGG | - | chr4_3:45718180-45718199 | None:intergenic | 35.0% | |
| TTGACAGGACTAACATAACT+TGG | - | chr4_3:45718222-45718241 | None:intergenic | 35.0% | |
| ! | TTGAAAAGAGTGATGGAGTT+TGG | - | chr4_3:45718287-45718306 | None:intergenic | 35.0% |
| CATGTTGTTGAAAAGAGTGA+TGG | - | chr4_3:45718294-45718313 | None:intergenic | 35.0% | |
| AATGGCAATGGCAATGATAA+CGG | + | chr4_3:45716840-45716859 | Msa0643200:CDS | 35.0% | |
| AATGGTAACAACGGTAACAA+TGG | + | chr4_3:45716879-45716898 | Msa0643200:CDS | 35.0% | |
| AAAGACAAAGGCAAAGGAAA+GGG | + | chr4_3:45716966-45716985 | Msa0643200:CDS | 35.0% | |
| ! | TGGCAAGCTTTCATATTTTG+AGG | - | chr4_3:45717009-45717028 | None:intergenic | 35.0% |
| ! | TTCCTTTGTTTACACTCTTC+CGG | - | chr4_3:45717104-45717123 | None:intergenic | 35.0% |
| ATCGTCTGATCTTAATCCAA+CGG | - | chr4_3:45717253-45717272 | None:intergenic | 35.0% | |
| !! | ATTAAATGGACTAGCATGAG+AGG | - | chr4_3:45717424-45717443 | None:intergenic | 35.0% |
| GTTAGAAGACCAAATTGTGA+TGG | + | chr4_3:45717640-45717659 | Msa0643200:intron | 35.0% | |
| ! | GAATTCATCGTCTGAAACTA+TGG | - | chr4_3:45717752-45717771 | None:intergenic | 35.0% |
| TCTCTTACAGTAAAATGGGA+CGG | + | chr4_3:45717916-45717935 | Msa0643200:CDS | 35.0% | |
| TTTCCACAATCACTTCTCTT+TGG | - | chr4_3:45717996-45718015 | None:intergenic | 35.0% | |
| TATGTCCATTTCAAGCAAAC+CGG | - | chr4_3:45718055-45718074 | None:intergenic | 35.0% | |
| GTTTGCTTGAAATGGACATA+AGG | + | chr4_3:45718055-45718074 | Msa0643200:CDS | 35.0% | |
| TTGAAATGGACATAAGGGTA+AGG | + | chr4_3:45718061-45718080 | Msa0643200:CDS | 35.0% | |
| ! | AGATGATGCTTTTGCTCATT+TGG | + | chr4_3:45718131-45718150 | Msa0643200:CDS | 35.0% |
| ACTCCTTCAATAGAATCTGT+AGG | - | chr4_3:45718180-45718199 | None:intergenic | 35.0% | |
| TTGACAGGACTAACATAACT+TGG | - | chr4_3:45718222-45718241 | None:intergenic | 35.0% | |
| ! | TTGAAAAGAGTGATGGAGTT+TGG | - | chr4_3:45718287-45718306 | None:intergenic | 35.0% |
| CATGTTGTTGAAAAGAGTGA+TGG | - | chr4_3:45718294-45718313 | None:intergenic | 35.0% | |
| CATTGCCATTACCATTTCCT+TGG | - | chr4_3:45716830-45716849 | None:intergenic | 40.0% | |
| !! | CAAGGAAATGGTAATGGCAA+TGG | + | chr4_3:45716828-45716847 | Msa0643200:CDS | 40.0% |
| !! | GGCAATGATAACGGTAACAA+TGG | + | chr4_3:45716849-45716868 | Msa0643200:CDS | 40.0% |
| ! | GATAACGGTAACAATGGCAA+CGG | + | chr4_3:45716855-45716874 | Msa0643200:CDS | 40.0% |
| AACAACGGTAACAATGGCAA+CGG | + | chr4_3:45716885-45716904 | Msa0643200:CDS | 40.0% | |
| CAACGGTAAGGGAAATGATA+AGG | + | chr4_3:45716902-45716921 | Msa0643200:CDS | 40.0% | |
| AAGGGAAATGATAAGGACGA+AGG | + | chr4_3:45716909-45716928 | Msa0643200:CDS | 40.0% | |
| AAATGATAAGGACGAAGGCA+AGG | + | chr4_3:45716914-45716933 | Msa0643200:CDS | 40.0% | |
| GACAAAGACGACAAAGACAA+AGG | + | chr4_3:45716954-45716973 | Msa0643200:CDS | 40.0% | |
| CAAAGACAAAGGCAAAGGAA+AGG | + | chr4_3:45716965-45716984 | Msa0643200:CDS | 40.0% | |
| AAGACAAAGGCAAAGGAAAG+GGG | + | chr4_3:45716967-45716986 | Msa0643200:CDS | 40.0% | |
| TTTCAAGACACTTGTGTGTC+CGG | + | chr4_3:45717082-45717101 | Msa0643200:CDS | 40.0% | |
| GAAGCCAAAGAAGAACAAGA+AGG | + | chr4_3:45717121-45717140 | Msa0643200:CDS | 40.0% | |
| TGTGAACTTACACTTGCAAG+TGG | - | chr4_3:45717183-45717202 | None:intergenic | 40.0% | |
| GATTAAGATCAGACGATGCA+TGG | + | chr4_3:45717256-45717275 | Msa0643200:intron | 40.0% | |
| TAAGATGGCTCACATAAGTC+AGG | - | chr4_3:45717301-45717320 | None:intergenic | 40.0% | |
| AGACCAAATTGTGATGGCTA+CGG | + | chr4_3:45717646-45717665 | Msa0643200:CDS | 40.0% | |
| CAAATCAACGCACACTTCAT+CGG | + | chr4_3:45717772-45717791 | Msa0643200:CDS | 40.0% | |
| CAGCCAATAGAGTAACTCAA+TGG | + | chr4_3:45717878-45717897 | Msa0643200:CDS | 40.0% | |
| CAACCAAAGAGAAGTGATTG+TGG | + | chr4_3:45717990-45718009 | Msa0643200:CDS | 40.0% | |
| AAGCATCATCTGATGGCAAT+TGG | - | chr4_3:45718122-45718141 | None:intergenic | 40.0% | |
| !! | TGAGCAAAAGCATCATCTGA+TGG | - | chr4_3:45718129-45718148 | None:intergenic | 40.0% |
| TATGTTAGTCCTGTCAAGAG+AGG | + | chr4_3:45718225-45718244 | Msa0643200:CDS | 40.0% | |
| ATTAATCCTTGGCTAGTGGA+AGG | - | chr4_3:45718339-45718358 | None:intergenic | 40.0% | |
| AGCAATTAATCCTTGGCTAG+TGG | - | chr4_3:45718343-45718362 | None:intergenic | 40.0% | |
| CATTGCCATTACCATTTCCT+TGG | - | chr4_3:45716830-45716849 | None:intergenic | 40.0% | |
| !! | CAAGGAAATGGTAATGGCAA+TGG | + | chr4_3:45716828-45716847 | Msa0643200:CDS | 40.0% |
| !! | GGCAATGATAACGGTAACAA+TGG | + | chr4_3:45716849-45716868 | Msa0643200:CDS | 40.0% |
| ! | GATAACGGTAACAATGGCAA+CGG | + | chr4_3:45716855-45716874 | Msa0643200:CDS | 40.0% |
| AACAACGGTAACAATGGCAA+CGG | + | chr4_3:45716885-45716904 | Msa0643200:CDS | 40.0% | |
| CAACGGTAAGGGAAATGATA+AGG | + | chr4_3:45716902-45716921 | Msa0643200:CDS | 40.0% | |
| AAGGGAAATGATAAGGACGA+AGG | + | chr4_3:45716909-45716928 | Msa0643200:CDS | 40.0% | |
| AAATGATAAGGACGAAGGCA+AGG | + | chr4_3:45716914-45716933 | Msa0643200:CDS | 40.0% | |
| GACAAAGACGACAAAGACAA+AGG | + | chr4_3:45716954-45716973 | Msa0643200:CDS | 40.0% | |
| CAAAGACAAAGGCAAAGGAA+AGG | + | chr4_3:45716965-45716984 | Msa0643200:CDS | 40.0% | |
| AAGACAAAGGCAAAGGAAAG+GGG | + | chr4_3:45716967-45716986 | Msa0643200:CDS | 40.0% | |
| TTTCAAGACACTTGTGTGTC+CGG | + | chr4_3:45717082-45717101 | Msa0643200:CDS | 40.0% | |
| GAAGCCAAAGAAGAACAAGA+AGG | + | chr4_3:45717121-45717140 | Msa0643200:CDS | 40.0% | |
| TGTGAACTTACACTTGCAAG+TGG | - | chr4_3:45717183-45717202 | None:intergenic | 40.0% | |
| GATTAAGATCAGACGATGCA+TGG | + | chr4_3:45717256-45717275 | Msa0643200:intron | 40.0% | |
| TAAGATGGCTCACATAAGTC+AGG | - | chr4_3:45717301-45717320 | None:intergenic | 40.0% | |
| AGACCAAATTGTGATGGCTA+CGG | + | chr4_3:45717646-45717665 | Msa0643200:CDS | 40.0% | |
| CAAATCAACGCACACTTCAT+CGG | + | chr4_3:45717772-45717791 | Msa0643200:CDS | 40.0% | |
| CAGCCAATAGAGTAACTCAA+TGG | + | chr4_3:45717878-45717897 | Msa0643200:CDS | 40.0% | |
| CAACCAAAGAGAAGTGATTG+TGG | + | chr4_3:45717990-45718009 | Msa0643200:CDS | 40.0% | |
| AAGCATCATCTGATGGCAAT+TGG | - | chr4_3:45718122-45718141 | None:intergenic | 40.0% | |
| !! | TGAGCAAAAGCATCATCTGA+TGG | - | chr4_3:45718129-45718148 | None:intergenic | 40.0% |
| TATGTTAGTCCTGTCAAGAG+AGG | + | chr4_3:45718225-45718244 | Msa0643200:CDS | 40.0% | |
| ATTAATCCTTGGCTAGTGGA+AGG | - | chr4_3:45718339-45718358 | None:intergenic | 40.0% | |
| AGCAATTAATCCTTGGCTAG+TGG | - | chr4_3:45718343-45718362 | None:intergenic | 40.0% | |
| ! | TGGAAGAAAGTGGAGCATCT+TGG | + | chr4_3:45716755-45716774 | Msa0643200:CDS | 45.0% |
| ! | AAGAAAGTGGAGCATCTTGG+TGG | + | chr4_3:45716758-45716777 | Msa0643200:CDS | 45.0% |
| ATGGAAGCTGTCATTGCTCA+AGG | + | chr4_3:45716804-45716823 | Msa0643200:CDS | 45.0% | |
| ATTGCTCAAGGCCAAGGAAA+TGG | + | chr4_3:45716816-45716835 | Msa0643200:CDS | 45.0% | |
| CAAGGCCAAGGAAATGGTAA+TGG | + | chr4_3:45716822-45716841 | Msa0643200:CDS | 45.0% | |
| GGTAACAATGGCAACGGTAA+TGG | + | chr4_3:45716861-45716880 | Msa0643200:CDS | 45.0% | |
| ! | GGCAACGGTAATGGTAACAA+CGG | + | chr4_3:45716870-45716889 | Msa0643200:CDS | 45.0% |
| GGTAACAATGGCAACGGTAA+GGG | + | chr4_3:45716861-45716880 | Msa0643200:CDS | 45.0% | |
| GACGACAAAGACAAAGGCAA+AGG | + | chr4_3:45716960-45716979 | Msa0643200:CDS | 45.0% | |
| AGGCAAAGGAAAGGGGAAAA+AGG | + | chr4_3:45716974-45716993 | Msa0643200:CDS | 45.0% | |
| AAGCTTGCCAGCTCTTCAAT+CGG | + | chr4_3:45717019-45717038 | Msa0643200:CDS | 45.0% | |
| ! | GTCCGGAAGAGTGTAAACAA+AGG | + | chr4_3:45717099-45717118 | Msa0643200:CDS | 45.0% |
| TTTGACGTAGTCACGCGATT+TGG | - | chr4_3:45717336-45717355 | None:intergenic | 45.0% | |
| TGTTACGATCCTCGCTTTGT+TGG | + | chr4_3:45717676-45717695 | Msa0643200:CDS | 45.0% | |
| GGTGTGATGTTCTACTTCCA+TGG | + | chr4_3:45717706-45717725 | Msa0643200:CDS | 45.0% | |
| TTCTACTTCCATGGAGCCAA+AGG | + | chr4_3:45717715-45717734 | Msa0643200:CDS | 45.0% | |
| TATGGCGAAGTTTCCTCCTT+TGG | - | chr4_3:45717734-45717753 | None:intergenic | 45.0% | |
| !! | CGATGAAGTGTGCGTTGATT+TGG | - | chr4_3:45717774-45717793 | None:intergenic | 45.0% |
| AAGGACTCGCGATTACACAT+GGG | + | chr4_3:45717810-45717829 | Msa0643200:CDS | 45.0% | |
| ! | GTTGCCACTTGACTTCCATT+CGG | - | chr4_3:45717974-45717993 | None:intergenic | 45.0% |
| TGCAGACAGTGTTAGAGTGA+CGG | + | chr4_3:45718026-45718045 | Msa0643200:CDS | 45.0% | |
| AGTGTTAGAGTGACGGTTTC+CGG | + | chr4_3:45718033-45718052 | Msa0643200:CDS | 45.0% | |
| ! | GGTTTCCGGTTTGCTTGAAA+TGG | + | chr4_3:45718047-45718066 | Msa0643200:CDS | 45.0% |
| GACATAAGGGTAAGGCCTAT+TGG | + | chr4_3:45718069-45718088 | Msa0643200:CDS | 45.0% | |
| GGTAAGGCCTATTGGAGAAA+AGG | + | chr4_3:45718077-45718096 | Msa0643200:CDS | 45.0% | |
| CAACAACATGCAAACTCTGC+AGG | + | chr4_3:45718304-45718323 | Msa0643200:CDS | 45.0% | |
| ! | TGGAAGAAAGTGGAGCATCT+TGG | + | chr4_3:45716755-45716774 | Msa0643200:CDS | 45.0% |
| ! | AAGAAAGTGGAGCATCTTGG+TGG | + | chr4_3:45716758-45716777 | Msa0643200:CDS | 45.0% |
| ATGGAAGCTGTCATTGCTCA+AGG | + | chr4_3:45716804-45716823 | Msa0643200:CDS | 45.0% | |
| ATTGCTCAAGGCCAAGGAAA+TGG | + | chr4_3:45716816-45716835 | Msa0643200:CDS | 45.0% | |
| CAAGGCCAAGGAAATGGTAA+TGG | + | chr4_3:45716822-45716841 | Msa0643200:CDS | 45.0% | |
| GGTAACAATGGCAACGGTAA+TGG | + | chr4_3:45716861-45716880 | Msa0643200:CDS | 45.0% | |
| ! | GGCAACGGTAATGGTAACAA+CGG | + | chr4_3:45716870-45716889 | Msa0643200:CDS | 45.0% |
| GGTAACAATGGCAACGGTAA+GGG | + | chr4_3:45716861-45716880 | Msa0643200:CDS | 45.0% | |
| GACGACAAAGACAAAGGCAA+AGG | + | chr4_3:45716960-45716979 | Msa0643200:CDS | 45.0% | |
| AGGCAAAGGAAAGGGGAAAA+AGG | + | chr4_3:45716974-45716993 | Msa0643200:CDS | 45.0% | |
| AAGCTTGCCAGCTCTTCAAT+CGG | + | chr4_3:45717019-45717038 | Msa0643200:CDS | 45.0% | |
| ! | GTCCGGAAGAGTGTAAACAA+AGG | + | chr4_3:45717099-45717118 | Msa0643200:CDS | 45.0% |
| TTTGACGTAGTCACGCGATT+TGG | - | chr4_3:45717336-45717355 | None:intergenic | 45.0% | |
| TGTTACGATCCTCGCTTTGT+TGG | + | chr4_3:45717676-45717695 | Msa0643200:CDS | 45.0% | |
| GGTGTGATGTTCTACTTCCA+TGG | + | chr4_3:45717706-45717725 | Msa0643200:CDS | 45.0% | |
| TTCTACTTCCATGGAGCCAA+AGG | + | chr4_3:45717715-45717734 | Msa0643200:CDS | 45.0% | |
| TATGGCGAAGTTTCCTCCTT+TGG | - | chr4_3:45717734-45717753 | None:intergenic | 45.0% | |
| !! | CGATGAAGTGTGCGTTGATT+TGG | - | chr4_3:45717774-45717793 | None:intergenic | 45.0% |
| AAGGACTCGCGATTACACAT+GGG | + | chr4_3:45717810-45717829 | Msa0643200:CDS | 45.0% | |
| ! | GTTGCCACTTGACTTCCATT+CGG | - | chr4_3:45717974-45717993 | None:intergenic | 45.0% |
| TGCAGACAGTGTTAGAGTGA+CGG | + | chr4_3:45718026-45718045 | Msa0643200:CDS | 45.0% | |
| AGTGTTAGAGTGACGGTTTC+CGG | + | chr4_3:45718033-45718052 | Msa0643200:CDS | 45.0% | |
| ! | GGTTTCCGGTTTGCTTGAAA+TGG | + | chr4_3:45718047-45718066 | Msa0643200:CDS | 45.0% |
| GACATAAGGGTAAGGCCTAT+TGG | + | chr4_3:45718069-45718088 | Msa0643200:CDS | 45.0% | |
| GGTAAGGCCTATTGGAGAAA+AGG | + | chr4_3:45718077-45718096 | Msa0643200:CDS | 45.0% | |
| CAACAACATGCAAACTCTGC+AGG | + | chr4_3:45718304-45718323 | Msa0643200:CDS | 45.0% | |
| CGGTAACAATGGCAACGGTA+AGG | + | chr4_3:45716860-45716879 | Msa0643200:CDS | 50.0% | |
| AAGGACGAAGGCAAGGACAA+AGG | + | chr4_3:45716921-45716940 | Msa0643200:CDS | 50.0% | |
| AGCTTGCCAGCTCTTCAATC+GGG | + | chr4_3:45717020-45717039 | Msa0643200:CDS | 50.0% | |
| TTCAATCGGGACAGGAACGA+GGG | + | chr4_3:45717033-45717052 | Msa0643200:CDS | 50.0% | |
| GAGCCGTAGCCATCACAATT+TGG | - | chr4_3:45717652-45717671 | None:intergenic | 50.0% | |
| ! | TACGATCCTCGCTTTGTTGG+TGG | + | chr4_3:45717679-45717698 | Msa0643200:CDS | 50.0% |
| TACTTCCATGGAGCCAAAGG+AGG | + | chr4_3:45717718-45717737 | Msa0643200:CDS | 50.0% | |
| ! | AGTTTCCTCCTTTGGCTCCA+TGG | - | chr4_3:45717726-45717745 | None:intergenic | 50.0% |
| TTCATCGGTACTCGACCTCA+GGG | + | chr4_3:45717787-45717806 | Msa0643200:CDS | 50.0% | |
| GAAGGACTCGCGATTACACA+TGG | + | chr4_3:45717809-45717828 | Msa0643200:CDS | 50.0% | |
| CATTCGGCATCTCCATCAGA+AGG | - | chr4_3:45717958-45717977 | None:intergenic | 50.0% | |
| CTTCTGATGGAGATGCCGAA+TGG | + | chr4_3:45717956-45717975 | Msa0643200:CDS | 50.0% | |
| GATGCCGAATGGAAGTCAAG+TGG | + | chr4_3:45717967-45717986 | Msa0643200:CDS | 50.0% | |
| ATAGCAACGCCTCTCTTGAC+AGG | - | chr4_3:45718237-45718256 | None:intergenic | 50.0% | |
| !! | TTGCTATGCCGATGATGGGA+GGG | + | chr4_3:45718250-45718269 | Msa0643200:CDS | 50.0% |
| TTGTCTTCCCCTCCCATCAT+CGG | - | chr4_3:45718261-45718280 | None:intergenic | 50.0% | |
| CGGTAACAATGGCAACGGTA+AGG | + | chr4_3:45716860-45716879 | Msa0643200:CDS | 50.0% | |
| AAGGACGAAGGCAAGGACAA+AGG | + | chr4_3:45716921-45716940 | Msa0643200:CDS | 50.0% | |
| AGCTTGCCAGCTCTTCAATC+GGG | + | chr4_3:45717020-45717039 | Msa0643200:CDS | 50.0% | |
| TTCAATCGGGACAGGAACGA+GGG | + | chr4_3:45717033-45717052 | Msa0643200:CDS | 50.0% | |
| GAGCCGTAGCCATCACAATT+TGG | - | chr4_3:45717652-45717671 | None:intergenic | 50.0% | |
| ! | TACGATCCTCGCTTTGTTGG+TGG | + | chr4_3:45717679-45717698 | Msa0643200:CDS | 50.0% |
| TACTTCCATGGAGCCAAAGG+AGG | + | chr4_3:45717718-45717737 | Msa0643200:CDS | 50.0% | |
| ! | AGTTTCCTCCTTTGGCTCCA+TGG | - | chr4_3:45717726-45717745 | None:intergenic | 50.0% |
| TTCATCGGTACTCGACCTCA+GGG | + | chr4_3:45717787-45717806 | Msa0643200:CDS | 50.0% | |
| GAAGGACTCGCGATTACACA+TGG | + | chr4_3:45717809-45717828 | Msa0643200:CDS | 50.0% | |
| CATTCGGCATCTCCATCAGA+AGG | - | chr4_3:45717958-45717977 | None:intergenic | 50.0% | |
| CTTCTGATGGAGATGCCGAA+TGG | + | chr4_3:45717956-45717975 | Msa0643200:CDS | 50.0% | |
| GATGCCGAATGGAAGTCAAG+TGG | + | chr4_3:45717967-45717986 | Msa0643200:CDS | 50.0% | |
| ATAGCAACGCCTCTCTTGAC+AGG | - | chr4_3:45718237-45718256 | None:intergenic | 50.0% | |
| !! | TTGCTATGCCGATGATGGGA+GGG | + | chr4_3:45718250-45718269 | Msa0643200:CDS | 50.0% |
| TTGTCTTCCCCTCCCATCAT+CGG | - | chr4_3:45718261-45718280 | None:intergenic | 50.0% | |
| GCTGTCATTGCTCAAGGCCA+AGG | + | chr4_3:45716810-45716829 | Msa0643200:CDS | 55.0% | |
| TCCTGTCCCGATTGAAGAGC+TGG | - | chr4_3:45717029-45717048 | None:intergenic | 55.0% | |
| CTTCAATCGGGACAGGAACG+AGG | + | chr4_3:45717032-45717051 | Msa0643200:CDS | 55.0% | |
| !! | CCTCGCTTTGTTGGTGGTGA+CGG | + | chr4_3:45717685-45717704 | Msa0643200:CDS | 55.0% |
| CTTCATCGGTACTCGACCTC+AGG | + | chr4_3:45717786-45717805 | Msa0643200:CDS | 55.0% | |
| TAATCGCGAGTCCTTCCCTG+AGG | - | chr4_3:45717805-45717824 | None:intergenic | 55.0% | |
| ! | AGGCGTTGCTATGCCGATGA+TGG | + | chr4_3:45718245-45718264 | Msa0643200:CDS | 55.0% |
| GGCGTTGCTATGCCGATGAT+GGG | + | chr4_3:45718246-45718265 | Msa0643200:CDS | 55.0% | |
| !! | GTTGCTATGCCGATGATGGG+AGG | + | chr4_3:45718249-45718268 | Msa0643200:CDS | 55.0% |
| !! | TGCTATGCCGATGATGGGAG+GGG | + | chr4_3:45718251-45718270 | Msa0643200:CDS | 55.0% |
| GCAAACTCTGCAGGTTCCAG+AGG | + | chr4_3:45718313-45718332 | Msa0643200:CDS | 55.0% | |
| GCTGTCATTGCTCAAGGCCA+AGG | + | chr4_3:45716810-45716829 | Msa0643200:CDS | 55.0% | |
| TCCTGTCCCGATTGAAGAGC+TGG | - | chr4_3:45717029-45717048 | None:intergenic | 55.0% | |
| CTTCAATCGGGACAGGAACG+AGG | + | chr4_3:45717032-45717051 | Msa0643200:CDS | 55.0% | |
| !! | CCTCGCTTTGTTGGTGGTGA+CGG | + | chr4_3:45717685-45717704 | Msa0643200:CDS | 55.0% |
| CTTCATCGGTACTCGACCTC+AGG | + | chr4_3:45717786-45717805 | Msa0643200:CDS | 55.0% | |
| TAATCGCGAGTCCTTCCCTG+AGG | - | chr4_3:45717805-45717824 | None:intergenic | 55.0% | |
| ! | AGGCGTTGCTATGCCGATGA+TGG | + | chr4_3:45718245-45718264 | Msa0643200:CDS | 55.0% |
| GGCGTTGCTATGCCGATGAT+GGG | + | chr4_3:45718246-45718265 | Msa0643200:CDS | 55.0% | |
| !! | GTTGCTATGCCGATGATGGG+AGG | + | chr4_3:45718249-45718268 | Msa0643200:CDS | 55.0% |
| !! | TGCTATGCCGATGATGGGAG+GGG | + | chr4_3:45718251-45718270 | Msa0643200:CDS | 55.0% |
| GCAAACTCTGCAGGTTCCAG+AGG | + | chr4_3:45718313-45718332 | Msa0643200:CDS | 55.0% | |
| GCCAGCTCTTCAATCGGGAC+AGG | + | chr4_3:45717025-45717044 | Msa0643200:CDS | 60.0% | |
| CCGTCACCACCAACAAAGCG+AGG | - | chr4_3:45717688-45717707 | None:intergenic | 60.0% | |
| TCGGTACTCGACCTCAGGGA+AGG | + | chr4_3:45717791-45717810 | Msa0643200:CDS | 60.0% | |
| CTTGGCTAGTGGAAGGCCTC+TGG | - | chr4_3:45718332-45718351 | None:intergenic | 60.0% | |
| CAGAGGCCTTCCACTAGCCA+AGG | + | chr4_3:45718330-45718349 | Msa0643200:CDS | 60.0% | |
| GCCAGCTCTTCAATCGGGAC+AGG | + | chr4_3:45717025-45717044 | Msa0643200:CDS | 60.0% | |
| CCGTCACCACCAACAAAGCG+AGG | - | chr4_3:45717688-45717707 | None:intergenic | 60.0% | |
| TCGGTACTCGACCTCAGGGA+AGG | + | chr4_3:45717791-45717810 | Msa0643200:CDS | 60.0% | |
| CTTGGCTAGTGGAAGGCCTC+TGG | - | chr4_3:45718332-45718351 | None:intergenic | 60.0% | |
| CAGAGGCCTTCCACTAGCCA+AGG | + | chr4_3:45718330-45718349 | Msa0643200:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 45716750 | 45718371 | 45716750 | ID=Msa0643200;Name=Msa0643200 |
| chr4_3 | mRNA | 45716750 | 45718371 | 45716750 | ID=Msa0643200-mRNA-1;Parent=Msa0643200;Name=Msa0643200-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0|1|1|1|2|0|390 |
| chr4_3 | exon | 45716750 | 45717191 | 45716750 | ID=Msa0643200-mRNA-1:exon:10623;Parent=Msa0643200-mRNA-1 |
| chr4_3 | exon | 45717641 | 45718371 | 45717641 | ID=Msa0643200-mRNA-1:exon:10624;Parent=Msa0643200-mRNA-1 |
| chr4_3 | CDS | 45716750 | 45717191 | 45716750 | ID=Msa0643200-mRNA-1:cds;Parent=Msa0643200-mRNA-1 |
| chr4_3 | CDS | 45717641 | 45718371 | 45717641 | ID=Msa0643200-mRNA-1:cds;Parent=Msa0643200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
