Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682860 | XP_003606402.1 | 99.344 | 305 | 2 | 0 | 86 | 390 | 91 | 395 | 0.0 | 618 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682860 | G7JPE4 | 99.344 | 305 | 2 | 0 | 86 | 390 | 91 | 395 | 0.0 | 618 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092220 | Msa0682860 | 0.810825 | 9.505098e-51 | -8.615850e-47 |
| Msa0643200 | Msa0682860 | 0.945803 | 1.539522e-104 | -8.615850e-47 |
| Msa0682860 | Msa0689830 | 0.813593 | 2.366743e-51 | -8.615850e-47 |
| Msa0682860 | Msa1124210 | 0.802699 | 4.956831e-49 | -8.615850e-47 |
| Msa0682860 | Msa1402010 | 0.807484 | 4.941272e-50 | -8.615850e-47 |
| Msa0547340 | Msa0682860 | 0.972394 | 1.077028e-134 | -8.615850e-47 |
| Msa0602070 | Msa0682860 | 0.944888 | 8.504859e-104 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682860 | MtrunA17_Chr4g0029291 | 99.344 | 305 | 2 | 0 | 86 | 390 | 91 | 395 | 0.0 | 618 |
| Msa0682860 | MtrunA17_Chr4g0029271 | 83.120 | 391 | 60 | 2 | 1 | 390 | 1 | 386 | 0.0 | 596 |
| Msa0682860 | MtrunA17_Chr2g0318341 | 47.222 | 288 | 145 | 4 | 107 | 390 | 38 | 322 | 1.40e-96 | 291 |
| Msa0682860 | MtrunA17_Chr2g0318311 | 47.569 | 288 | 144 | 4 | 107 | 390 | 38 | 322 | 3.77e-96 | 290 |
| Msa0682860 | MtrunA17_Chr8g0360691 | 46.520 | 273 | 141 | 3 | 107 | 377 | 38 | 307 | 1.78e-88 | 271 |
| Msa0682860 | MtrunA17_Chr2g0292811 | 42.537 | 268 | 135 | 3 | 110 | 377 | 46 | 294 | 2.58e-76 | 239 |
| Msa0682860 | MtrunA17_Chr2g0287361 | 40.138 | 289 | 150 | 5 | 93 | 377 | 26 | 295 | 8.52e-76 | 238 |
| Msa0682860 | MtrunA17_Chr2g0292801 | 43.657 | 268 | 132 | 3 | 110 | 377 | 309 | 557 | 6.12e-75 | 243 |
| Msa0682860 | MtrunA17_Chr2g0292821 | 43.284 | 268 | 133 | 3 | 110 | 377 | 309 | 557 | 1.18e-73 | 240 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682860 | AT5G60530.1 | 68.136 | 295 | 92 | 2 | 86 | 378 | 135 | 429 | 1.90e-157 | 451 |
| Msa0682860 | AT5G60520.1 | 68.182 | 308 | 97 | 1 | 72 | 378 | 21 | 328 | 1.43e-153 | 437 |
| Msa0682860 | AT4G27400.1 | 44.561 | 285 | 152 | 4 | 106 | 387 | 35 | 316 | 1.51e-91 | 279 |
| Msa0682860 | AT5G54370.1 | 43.243 | 296 | 159 | 5 | 95 | 387 | 20 | 309 | 1.32e-89 | 274 |
| Msa0682860 | AT1G54890.1 | 43.403 | 288 | 156 | 5 | 95 | 377 | 26 | 311 | 2.57e-86 | 266 |
| Msa0682860 | AT3G19430.1 | 43.310 | 284 | 143 | 5 | 97 | 377 | 258 | 526 | 5.17e-77 | 248 |
| Msa0682860 | AT3G19430.2 | 43.310 | 284 | 143 | 5 | 97 | 377 | 281 | 549 | 7.19e-77 | 248 |
Find 107 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACTCTCTTACAGTAAAA+TGG | 0.185746 | 4_4:+44920762 | Msa0682860:CDS |
| TTATCCTTCTTGTTCTTCTT+TGG | 0.195002 | 4_4:-44919976 | None:intergenic |
| GAATTCATCGTCTGAAACTA+TGG | 0.242755 | 4_4:-44920600 | None:intergenic |
| TTTCCACAATCACTTCTCTT+TGG | 0.271483 | 4_4:-44920844 | None:intergenic |
| AGTGTTAGAGTGACAGTTTC+CGG | 0.303767 | 4_4:+44920884 | Msa0682860:CDS |
| TTCCTTTGTTTACACTCTTC+CGG | 0.316690 | 4_4:-44919952 | None:intergenic |
| CGATGAAGTGTGCGTTGATT+TGG | 0.331268 | 4_4:-44920622 | None:intergenic |
| AGGCAAAGGAAAGGGGAAAA+AGG | 0.348798 | 4_4:+44919825 | Msa0682860:CDS |
| CATTGCCATTACCATTTCCT+TGG | 0.358834 | 4_4:-44919678 | None:intergenic |
| TATGGCGAAGTTTCCTCCTT+TGG | 0.367101 | 4_4:-44920582 | None:intergenic |
| ATTCCATTGAGTTACTCTAT+TGG | 0.373593 | 4_4:-44920732 | None:intergenic |
| TTGAAAAGAGTGATGGAGTT+TGG | 0.380596 | 4_4:-44921135 | None:intergenic |
| AGTTTCCGGTTTGCTTGAAA+TGG | 0.381253 | 4_4:+44920898 | Msa0682860:CDS |
| GAACCGTAGCCATCACAATT+TGG | 0.391092 | 4_4:-44920500 | None:intergenic |
| GACATAAGGGTAAGGCCTAT+TGG | 0.392194 | 4_4:+44920920 | Msa0682860:CDS |
| AATCCTACAGATTCTATTGA+AGG | 0.405188 | 4_4:+44921025 | Msa0682860:CDS |
| AAAGACAAAGGCAAAGGAAA+GGG | 0.406086 | 4_4:+44919817 | Msa0682860:CDS |
| AAGAAGAACAAGAAGGATAA+AGG | 0.412069 | 4_4:+44919979 | Msa0682860:CDS |
| TTTCAAGACACTTGTGTGTC+CGG | 0.420772 | 4_4:+44919933 | Msa0682860:CDS |
| CTTGGCTAGTGGAAGGCCTC+TGG | 0.439679 | 4_4:-44921180 | None:intergenic |
| CTTCATCGGTACTCGACCTC+AGG | 0.443542 | 4_4:+44920637 | Msa0682860:CDS |
| GGTAAGGCCTATTGGAGAAA+AGG | 0.448306 | 4_4:+44920928 | Msa0682860:CDS |
| GTTTGCTTGAAATGGACATA+AGG | 0.452921 | 4_4:+44920906 | Msa0682860:CDS |
| CAACAACATGCAAACTCTGC+AGG | 0.455560 | 4_4:+44921155 | Msa0682860:CDS |
| AAGCTTGCCAGCTCTTCAAT+CGG | 0.459439 | 4_4:+44919870 | Msa0682860:CDS |
| AAGCATCATCTGATGGCAAT+TGG | 0.461439 | 4_4:-44920970 | None:intergenic |
| TCCTGTCCCGATTGAAGAGC+TGG | 0.462032 | 4_4:-44919877 | None:intergenic |
| TGACTCTCTTACAGTAAAAT+GGG | 0.465803 | 4_4:+44920763 | Msa0682860:CDS |
| CGGTAACAATGGCAACGGTA+AGG | 0.466846 | 4_4:+44919741 | Msa0682860:CDS |
| ATTGCTCAAGGCCAAGGAAA+TGG | 0.467146 | 4_4:+44919667 | Msa0682860:CDS |
| TATGTCCATTTCAAGCAAAC+CGG | 0.477542 | 4_4:-44920903 | None:intergenic |
| AGGCGTTGCTATGCCGATGA+TGG | 0.478306 | 4_4:+44921096 | Msa0682860:CDS |
| AGTTTCCTCCTTTGGCTCCA+TGG | 0.483265 | 4_4:-44920574 | None:intergenic |
| TTTGCTTGAAATGGACATAA+GGG | 0.483863 | 4_4:+44920907 | Msa0682860:CDS |
| TACGATCCTCGCTTTGTTGG+TGG | 0.487215 | 4_4:+44920530 | Msa0682860:CDS |
| TTAGTAACTATTCCTTCTGA+TGG | 0.487513 | 4_4:+44920794 | Msa0682860:CDS |
| TGTTACGATCCTCGCTTTGT+TGG | 0.488383 | 4_4:+44920527 | Msa0682860:CDS |
| AGAGAGTTCACCAAGATGGC+TGG | 0.489242 | 4_4:+44919586 | None:intergenic |
| AGCTTGCCAGCTCTTCAATC+GGG | 0.489857 | 4_4:+44919871 | Msa0682860:CDS |
| GTTGCCACTTGACTTCCATT+CGG | 0.489934 | 4_4:-44920822 | None:intergenic |
| GGTAACAATGGCAACGGTAA+TGG | 0.490289 | 4_4:+44919712 | Msa0682860:CDS |
| CCTCGCTTTGTTGGTGGTGA+CGG | 0.491282 | 4_4:+44920536 | Msa0682860:CDS |
| CATGTTGTTGAAAAGAGTGA+TGG | 0.501148 | 4_4:-44921142 | None:intergenic |
| ATAGCAACGCCTCTCTTGAC+AGG | 0.501342 | 4_4:-44921085 | None:intergenic |
| AGCAATTAGCCCTTGGCTAG+TGG | 0.502597 | 4_4:-44921191 | None:intergenic |
| CAAAGACAAAGGCAAAGGAA+AGG | 0.504829 | 4_4:+44919816 | Msa0682860:CDS |
| GCCAGCTCTTCAATCGGGAC+AGG | 0.506018 | 4_4:+44919876 | Msa0682860:CDS |
| TTGTCTTCCCCTCCCATCAT+CGG | 0.516690 | 4_4:-44921109 | None:intergenic |
| TGCTATGCCGATGATGGGAG+GGG | 0.520495 | 4_4:+44921102 | Msa0682860:CDS |
| AGTATTGAGCAATTAGCCCT+TGG | 0.528406 | 4_4:-44921198 | None:intergenic |
| TTGACAGGACTAACATAACT+TGG | 0.528654 | 4_4:-44921070 | None:intergenic |
| TTCTACTTCCATGGAGCCAA+AGG | 0.530261 | 4_4:+44920566 | Msa0682860:CDS |
| CAGCCAATAGAGTAACTCAA+TGG | 0.535035 | 4_4:+44920729 | Msa0682860:CDS |
| CAAGGCCAAGGAAATGGTAA+TGG | 0.535225 | 4_4:+44919673 | Msa0682860:CDS |
| GCTGTCATTGCTCAAGGCCA+AGG | 0.536607 | 4_4:+44919661 | Msa0682860:CDS |
| CAACGGTAAGGGAAATGATA+AGG | 0.536819 | 4_4:+44919753 | Msa0682860:CDS |
| CCAAGATGGCTGGAAGAAAG+TGG | 0.542641 | 4_4:+44919596 | None:intergenic |
| AATGGCAATGGCAATGATAA+CGG | 0.544965 | 4_4:+44919691 | Msa0682860:CDS |
| GGCGTTGCTATGCCGATGAT+GGG | 0.546171 | 4_4:+44921097 | Msa0682860:CDS |
| CAGAGGCCTTCCACTAGCCA+AGG | 0.557462 | 4_4:+44921181 | Msa0682860:CDS |
| TTGCTATGCCGATGATGGGA+GGG | 0.557875 | 4_4:+44921101 | Msa0682860:CDS |
| GTTAGAAGACCAAATTGTGA+TGG | 0.563863 | 4_4:+44920491 | Msa0682860:intron |
| AAGACAAAGGCAAAGGAAAG+GGG | 0.568570 | 4_4:+44919818 | Msa0682860:CDS |
| GGTAACAATGGCAACGGTAA+GGG | 0.569494 | 4_4:+44919742 | Msa0682860:CDS |
| CAAATCAACGCACACTTCAT+CGG | 0.574077 | 4_4:+44920623 | Msa0682860:CDS |
| GCAAACTCTGCAGGTTCCAG+AGG | 0.576301 | 4_4:+44921164 | Msa0682860:CDS |
| ATGGAAGCTGTCATTGCTCA+AGG | 0.577049 | 4_4:+44919655 | Msa0682860:CDS |
| AAGAAAGTGGAGCATCTTGG+TGG | 0.578600 | 4_4:+44919609 | Msa0682860:CDS |
| GAAGGACTCGCGATTACACA+TGG | 0.579448 | 4_4:+44920660 | Msa0682860:CDS |
| TGTGAACTTACACTTGCAAG+TGG | 0.579594 | 4_4:-44920031 | None:intergenic |
| GACAAAGACGACAAAGACAA+AGG | 0.583327 | 4_4:+44919805 | Msa0682860:CDS |
| CAAGGAAATGGTAATGGCAA+TGG | 0.586689 | 4_4:+44919679 | Msa0682860:CDS |
| CAACCAAAGAGAAGTGATTG+TGG | 0.588758 | 4_4:+44920841 | Msa0682860:CDS |
| GGCAATGATAACGGTAACAA+TGG | 0.590008 | 4_4:+44919700 | Msa0682860:CDS |
| TGGAAGAAAGTGGAGCATCT+TGG | 0.590363 | 4_4:+44919606 | Msa0682860:CDS |
| TTGAAATGGACATAAGGGTA+AGG | 0.592556 | 4_4:+44920912 | Msa0682860:CDS |
| GGTGTGATGTTCTACTTCCA+TGG | 0.592688 | 4_4:+44920557 | Msa0682860:CDS |
| GACGACAAAGACAAAGGCAA+AGG | 0.593756 | 4_4:+44919811 | Msa0682860:CDS |
| CTTCAATCGGGACAGGAACG+AGG | 0.594901 | 4_4:+44919883 | Msa0682860:CDS |
| ACTCCTTCAATAGAATCTGT+AGG | 0.597663 | 4_4:-44921028 | None:intergenic |
| GAAGCCAAAGAAGAACAAGA+AGG | 0.599717 | 4_4:+44919972 | Msa0682860:CDS |
| AGACCAAATTGTGATGGCTA+CGG | 0.601516 | 4_4:+44920497 | Msa0682860:CDS |
| CATTCGGCATCTCCATCAGA+AGG | 0.601517 | 4_4:-44920806 | None:intergenic |
| CTTCTGATGGAGATGCCGAA+TGG | 0.602970 | 4_4:+44920807 | Msa0682860:CDS |
| AATGGTAACAACGGTAACAA+TGG | 0.605001 | 4_4:+44919730 | Msa0682860:CDS |
| TGAGCAAAAGCATCATCTGA+TGG | 0.608641 | 4_4:-44920977 | None:intergenic |
| AAATGATAAGGACGAAGGCA+AGG | 0.611935 | 4_4:+44919765 | Msa0682860:CDS |
| GTTGCTATGCCGATGATGGG+AGG | 0.614523 | 4_4:+44921100 | Msa0682860:CDS |
| TACTTCCATGGAGCCAAAGG+AGG | 0.618849 | 4_4:+44920569 | Msa0682860:CDS |
| ATTAGCCCTTGGCTAGTGGA+AGG | 0.619757 | 4_4:-44921187 | None:intergenic |
| AAGGACGAAGGCAAGGACAA+AGG | 0.625848 | 4_4:+44919772 | Msa0682860:CDS |
| GATAACGGTAACAATGGCAA+CGG | 0.627056 | 4_4:+44919706 | Msa0682860:CDS |
| AACAACGGTAACAATGGCAA+CGG | 0.628721 | 4_4:+44919736 | Msa0682860:CDS |
| TTCATCGGTACTCGACCTCA+GGG | 0.629361 | 4_4:+44920638 | Msa0682860:CDS |
| TATTGGAGAAAAGGAAAACA+AGG | 0.632095 | 4_4:+44920937 | Msa0682860:CDS |
| TATGTTAGTCCTGTCAAGAG+AGG | 0.633793 | 4_4:+44921076 | Msa0682860:CDS |
| GGCAACGGTAATGGTAACAA+CGG | 0.636737 | 4_4:+44919721 | Msa0682860:CDS |
| AGAGGCCTTCCACTAGCCAA+GGG | 0.637736 | 4_4:+44921182 | Msa0682860:CDS |
| TCGGTACTCGACCTCAGGGA+AGG | 0.642030 | 4_4:+44920642 | Msa0682860:CDS |
| TTCAATCGGGACAGGAACGA+GGG | 0.650568 | 4_4:+44919884 | Msa0682860:CDS |
| TCTCTTACAGTAAAATGGGA+CGG | 0.652194 | 4_4:+44920767 | Msa0682860:CDS |
| CCGTCACCACCAACAAAGCG+AGG | 0.670633 | 4_4:-44920536 | None:intergenic |
| GATGCCGAATGGAAGTCAAG+TGG | 0.682123 | 4_4:+44920818 | Msa0682860:CDS |
| AAGGGAAATGATAAGGACGA+AGG | 0.689947 | 4_4:+44919760 | Msa0682860:CDS |
| TAATCGCGAGTCCTTCCCTG+AGG | 0.723910 | 4_4:-44920653 | None:intergenic |
| AAGGACTCGCGATTACACAT+GGG | 0.725962 | 4_4:+44920661 | Msa0682860:CDS |
| GTCCGGAAGAGTGTAAACAA+AGG | 0.729113 | 4_4:+44919950 | Msa0682860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATCTATCTATATTTATATT+TGG | + | chr4_4:44920052-44920071 | Msa0682860:intron | 15.0% |
| !!! | TGTATATAAGAAGTATTAAA+TGG | - | chr4_4:44920289-44920308 | None:intergenic | 15.0% |
| !! | CATCTATCTATATTTATATT+TGG | + | chr4_4:44920052-44920071 | Msa0682860:intron | 15.0% |
| !!! | TGTATATAAGAAGTATTAAA+TGG | - | chr4_4:44920289-44920308 | None:intergenic | 15.0% |
| !! | ATTTAATTAGATATGATTGC+AGG | + | chr4_4:44920318-44920337 | Msa0682860:intron | 20.0% |
| !!! | ACAGTGTAAATTTTATTAAG+TGG | + | chr4_4:44920372-44920391 | Msa0682860:intron | 20.0% |
| !! | ATTTAATTAGATATGATTGC+AGG | + | chr4_4:44920318-44920337 | Msa0682860:intron | 20.0% |
| !!! | ACAGTGTAAATTTTATTAAG+TGG | + | chr4_4:44920372-44920391 | Msa0682860:intron | 20.0% |
| ! | AGAGATGAGTAAGATAAAAA+AGG | - | chr4_4:44919635-44919654 | None:intergenic | 25.0% |
| !! | TTTTATCTTACTCATCTCTA+TGG | + | chr4_4:44919636-44919655 | Msa0682860:CDS | 25.0% |
| !! | ATGTAGATTTTGTCTATGAT+AGG | + | chr4_4:44920236-44920255 | Msa0682860:intron | 25.0% |
| !! | TGTAGATTTTGTCTATGATA+GGG | + | chr4_4:44920237-44920256 | Msa0682860:intron | 25.0% |
| ! | AGAGATGAGTAAGATAAAAA+AGG | - | chr4_4:44919635-44919654 | None:intergenic | 25.0% |
| !! | TTTTATCTTACTCATCTCTA+TGG | + | chr4_4:44919636-44919655 | Msa0682860:CDS | 25.0% |
| !! | ATGTAGATTTTGTCTATGAT+AGG | + | chr4_4:44920236-44920255 | Msa0682860:intron | 25.0% |
| !! | TGTAGATTTTGTCTATGATA+GGG | + | chr4_4:44920237-44920256 | Msa0682860:intron | 25.0% |
| ! | AATGACAAGTATTTTGTGCT+TGG | - | chr4_4:44919915-44919934 | None:intergenic | 30.0% |
| TTATCCTTCTTGTTCTTCTT+TGG | - | chr4_4:44919979-44919998 | None:intergenic | 30.0% | |
| AAGAAGAACAAGAAGGATAA+AGG | + | chr4_4:44919979-44919998 | Msa0682860:CDS | 30.0% | |
| TAATACTTGATCTATACCGT+TGG | + | chr4_4:44920085-44920104 | Msa0682860:intron | 30.0% | |
| ! | CATGGTCCAACTTTATATTT+TGG | + | chr4_4:44920125-44920144 | Msa0682860:intron | 30.0% |
| TCAGGTCCAAAATATAAAGT+TGG | - | chr4_4:44920134-44920153 | None:intergenic | 30.0% | |
| TGGATCATCATAAGATAAGA+TGG | - | chr4_4:44920167-44920186 | None:intergenic | 30.0% | |
| TATGAAATCTGATTAGACGA+CGG | + | chr4_4:44920401-44920420 | Msa0682860:intron | 30.0% | |
| ATTCCATTGAGTTACTCTAT+TGG | - | chr4_4:44920735-44920754 | None:intergenic | 30.0% | |
| TTGACTCTCTTACAGTAAAA+TGG | + | chr4_4:44920762-44920781 | Msa0682860:CDS | 30.0% | |
| TGACTCTCTTACAGTAAAAT+GGG | + | chr4_4:44920763-44920782 | Msa0682860:CDS | 30.0% | |
| TTAGTAACTATTCCTTCTGA+TGG | + | chr4_4:44920794-44920813 | Msa0682860:CDS | 30.0% | |
| TTTGCTTGAAATGGACATAA+GGG | + | chr4_4:44920907-44920926 | Msa0682860:CDS | 30.0% | |
| ! | TTGTTTTCCTTTTCTCCAAT+AGG | - | chr4_4:44920938-44920957 | None:intergenic | 30.0% |
| TATTGGAGAAAAGGAAAACA+AGG | + | chr4_4:44920937-44920956 | Msa0682860:CDS | 30.0% | |
| AATCCTACAGATTCTATTGA+AGG | + | chr4_4:44921025-44921044 | Msa0682860:CDS | 30.0% | |
| ! | GATTCTATTGAAGGAGTTTT+AGG | + | chr4_4:44921034-44921053 | Msa0682860:CDS | 30.0% |
| !!! | GAGTTTTAGGTCAAACTTAT+AGG | + | chr4_4:44921047-44921066 | Msa0682860:CDS | 30.0% |
| ! | AATGACAAGTATTTTGTGCT+TGG | - | chr4_4:44919915-44919934 | None:intergenic | 30.0% |
| TTATCCTTCTTGTTCTTCTT+TGG | - | chr4_4:44919979-44919998 | None:intergenic | 30.0% | |
| AAGAAGAACAAGAAGGATAA+AGG | + | chr4_4:44919979-44919998 | Msa0682860:CDS | 30.0% | |
| TAATACTTGATCTATACCGT+TGG | + | chr4_4:44920085-44920104 | Msa0682860:intron | 30.0% | |
| ! | CATGGTCCAACTTTATATTT+TGG | + | chr4_4:44920125-44920144 | Msa0682860:intron | 30.0% |
| TCAGGTCCAAAATATAAAGT+TGG | - | chr4_4:44920134-44920153 | None:intergenic | 30.0% | |
| TGGATCATCATAAGATAAGA+TGG | - | chr4_4:44920167-44920186 | None:intergenic | 30.0% | |
| TATGAAATCTGATTAGACGA+CGG | + | chr4_4:44920401-44920420 | Msa0682860:intron | 30.0% | |
| ATTCCATTGAGTTACTCTAT+TGG | - | chr4_4:44920735-44920754 | None:intergenic | 30.0% | |
| TTGACTCTCTTACAGTAAAA+TGG | + | chr4_4:44920762-44920781 | Msa0682860:CDS | 30.0% | |
| TGACTCTCTTACAGTAAAAT+GGG | + | chr4_4:44920763-44920782 | Msa0682860:CDS | 30.0% | |
| TTAGTAACTATTCCTTCTGA+TGG | + | chr4_4:44920794-44920813 | Msa0682860:CDS | 30.0% | |
| TTTGCTTGAAATGGACATAA+GGG | + | chr4_4:44920907-44920926 | Msa0682860:CDS | 30.0% | |
| ! | TTGTTTTCCTTTTCTCCAAT+AGG | - | chr4_4:44920938-44920957 | None:intergenic | 30.0% |
| TATTGGAGAAAAGGAAAACA+AGG | + | chr4_4:44920937-44920956 | Msa0682860:CDS | 30.0% | |
| AATCCTACAGATTCTATTGA+AGG | + | chr4_4:44921025-44921044 | Msa0682860:CDS | 30.0% | |
| ! | GATTCTATTGAAGGAGTTTT+AGG | + | chr4_4:44921034-44921053 | Msa0682860:CDS | 30.0% |
| !!! | GAGTTTTAGGTCAAACTTAT+AGG | + | chr4_4:44921047-44921066 | Msa0682860:CDS | 30.0% |
| AATGGCAATGGCAATGATAA+CGG | + | chr4_4:44919691-44919710 | Msa0682860:CDS | 35.0% | |
| AATGGTAACAACGGTAACAA+TGG | + | chr4_4:44919730-44919749 | Msa0682860:CDS | 35.0% | |
| AAAGACAAAGGCAAAGGAAA+GGG | + | chr4_4:44919817-44919836 | Msa0682860:CDS | 35.0% | |
| ! | TGGCAAGCTTTCATATTTTG+AGG | - | chr4_4:44919860-44919879 | None:intergenic | 35.0% |
| ! | TTCCTTTGTTTACACTCTTC+CGG | - | chr4_4:44919955-44919974 | None:intergenic | 35.0% |
| ATCGTCTGATCTTAATCCAA+CGG | - | chr4_4:44920104-44920123 | None:intergenic | 35.0% | |
| !! | ATTAAATGGACTAGCATGAG+AGG | - | chr4_4:44920275-44920294 | None:intergenic | 35.0% |
| GTTAGAAGACCAAATTGTGA+TGG | + | chr4_4:44920491-44920510 | Msa0682860:intron | 35.0% | |
| ! | GAATTCATCGTCTGAAACTA+TGG | - | chr4_4:44920603-44920622 | None:intergenic | 35.0% |
| TCTCTTACAGTAAAATGGGA+CGG | + | chr4_4:44920767-44920786 | Msa0682860:CDS | 35.0% | |
| TTTCCACAATCACTTCTCTT+TGG | - | chr4_4:44920847-44920866 | None:intergenic | 35.0% | |
| TATGTCCATTTCAAGCAAAC+CGG | - | chr4_4:44920906-44920925 | None:intergenic | 35.0% | |
| GTTTGCTTGAAATGGACATA+AGG | + | chr4_4:44920906-44920925 | Msa0682860:CDS | 35.0% | |
| TTGAAATGGACATAAGGGTA+AGG | + | chr4_4:44920912-44920931 | Msa0682860:CDS | 35.0% | |
| ! | AGATGATGCTTTTGCTCATT+TGG | + | chr4_4:44920982-44921001 | Msa0682860:CDS | 35.0% |
| ACTCCTTCAATAGAATCTGT+AGG | - | chr4_4:44921031-44921050 | None:intergenic | 35.0% | |
| TTGACAGGACTAACATAACT+TGG | - | chr4_4:44921073-44921092 | None:intergenic | 35.0% | |
| ! | TTGAAAAGAGTGATGGAGTT+TGG | - | chr4_4:44921138-44921157 | None:intergenic | 35.0% |
| CATGTTGTTGAAAAGAGTGA+TGG | - | chr4_4:44921145-44921164 | None:intergenic | 35.0% | |
| AATGGCAATGGCAATGATAA+CGG | + | chr4_4:44919691-44919710 | Msa0682860:CDS | 35.0% | |
| AATGGTAACAACGGTAACAA+TGG | + | chr4_4:44919730-44919749 | Msa0682860:CDS | 35.0% | |
| AAAGACAAAGGCAAAGGAAA+GGG | + | chr4_4:44919817-44919836 | Msa0682860:CDS | 35.0% | |
| ! | TGGCAAGCTTTCATATTTTG+AGG | - | chr4_4:44919860-44919879 | None:intergenic | 35.0% |
| ! | TTCCTTTGTTTACACTCTTC+CGG | - | chr4_4:44919955-44919974 | None:intergenic | 35.0% |
| ATCGTCTGATCTTAATCCAA+CGG | - | chr4_4:44920104-44920123 | None:intergenic | 35.0% | |
| !! | ATTAAATGGACTAGCATGAG+AGG | - | chr4_4:44920275-44920294 | None:intergenic | 35.0% |
| GTTAGAAGACCAAATTGTGA+TGG | + | chr4_4:44920491-44920510 | Msa0682860:intron | 35.0% | |
| ! | GAATTCATCGTCTGAAACTA+TGG | - | chr4_4:44920603-44920622 | None:intergenic | 35.0% |
| TCTCTTACAGTAAAATGGGA+CGG | + | chr4_4:44920767-44920786 | Msa0682860:CDS | 35.0% | |
| TTTCCACAATCACTTCTCTT+TGG | - | chr4_4:44920847-44920866 | None:intergenic | 35.0% | |
| TATGTCCATTTCAAGCAAAC+CGG | - | chr4_4:44920906-44920925 | None:intergenic | 35.0% | |
| GTTTGCTTGAAATGGACATA+AGG | + | chr4_4:44920906-44920925 | Msa0682860:CDS | 35.0% | |
| TTGAAATGGACATAAGGGTA+AGG | + | chr4_4:44920912-44920931 | Msa0682860:CDS | 35.0% | |
| ! | AGATGATGCTTTTGCTCATT+TGG | + | chr4_4:44920982-44921001 | Msa0682860:CDS | 35.0% |
| ACTCCTTCAATAGAATCTGT+AGG | - | chr4_4:44921031-44921050 | None:intergenic | 35.0% | |
| TTGACAGGACTAACATAACT+TGG | - | chr4_4:44921073-44921092 | None:intergenic | 35.0% | |
| ! | TTGAAAAGAGTGATGGAGTT+TGG | - | chr4_4:44921138-44921157 | None:intergenic | 35.0% |
| CATGTTGTTGAAAAGAGTGA+TGG | - | chr4_4:44921145-44921164 | None:intergenic | 35.0% | |
| CATTGCCATTACCATTTCCT+TGG | - | chr4_4:44919681-44919700 | None:intergenic | 40.0% | |
| !! | CAAGGAAATGGTAATGGCAA+TGG | + | chr4_4:44919679-44919698 | Msa0682860:CDS | 40.0% |
| !! | GGCAATGATAACGGTAACAA+TGG | + | chr4_4:44919700-44919719 | Msa0682860:CDS | 40.0% |
| ! | GATAACGGTAACAATGGCAA+CGG | + | chr4_4:44919706-44919725 | Msa0682860:CDS | 40.0% |
| AACAACGGTAACAATGGCAA+CGG | + | chr4_4:44919736-44919755 | Msa0682860:CDS | 40.0% | |
| CAACGGTAAGGGAAATGATA+AGG | + | chr4_4:44919753-44919772 | Msa0682860:CDS | 40.0% | |
| AAGGGAAATGATAAGGACGA+AGG | + | chr4_4:44919760-44919779 | Msa0682860:CDS | 40.0% | |
| AAATGATAAGGACGAAGGCA+AGG | + | chr4_4:44919765-44919784 | Msa0682860:CDS | 40.0% | |
| GACAAAGACGACAAAGACAA+AGG | + | chr4_4:44919805-44919824 | Msa0682860:CDS | 40.0% | |
| CAAAGACAAAGGCAAAGGAA+AGG | + | chr4_4:44919816-44919835 | Msa0682860:CDS | 40.0% | |
| AAGACAAAGGCAAAGGAAAG+GGG | + | chr4_4:44919818-44919837 | Msa0682860:CDS | 40.0% | |
| TTTCAAGACACTTGTGTGTC+CGG | + | chr4_4:44919933-44919952 | Msa0682860:CDS | 40.0% | |
| GAAGCCAAAGAAGAACAAGA+AGG | + | chr4_4:44919972-44919991 | Msa0682860:CDS | 40.0% | |
| TGTGAACTTACACTTGCAAG+TGG | - | chr4_4:44920034-44920053 | None:intergenic | 40.0% | |
| GATTAAGATCAGACGATGCA+TGG | + | chr4_4:44920107-44920126 | Msa0682860:intron | 40.0% | |
| TAAGATGGCTCACATAAGTC+AGG | - | chr4_4:44920152-44920171 | None:intergenic | 40.0% | |
| AGACCAAATTGTGATGGCTA+CGG | + | chr4_4:44920497-44920516 | Msa0682860:CDS | 40.0% | |
| CAAATCAACGCACACTTCAT+CGG | + | chr4_4:44920623-44920642 | Msa0682860:CDS | 40.0% | |
| CAGCCAATAGAGTAACTCAA+TGG | + | chr4_4:44920729-44920748 | Msa0682860:CDS | 40.0% | |
| CAACCAAAGAGAAGTGATTG+TGG | + | chr4_4:44920841-44920860 | Msa0682860:CDS | 40.0% | |
| AGTGTTAGAGTGACAGTTTC+CGG | + | chr4_4:44920884-44920903 | Msa0682860:CDS | 40.0% | |
| ! | AGTTTCCGGTTTGCTTGAAA+TGG | + | chr4_4:44920898-44920917 | Msa0682860:CDS | 40.0% |
| AAGCATCATCTGATGGCAAT+TGG | - | chr4_4:44920973-44920992 | None:intergenic | 40.0% | |
| !! | TGAGCAAAAGCATCATCTGA+TGG | - | chr4_4:44920980-44920999 | None:intergenic | 40.0% |
| TATGTTAGTCCTGTCAAGAG+AGG | + | chr4_4:44921076-44921095 | Msa0682860:CDS | 40.0% | |
| ! | AGTATTGAGCAATTAGCCCT+TGG | - | chr4_4:44921201-44921220 | None:intergenic | 40.0% |
| CATTGCCATTACCATTTCCT+TGG | - | chr4_4:44919681-44919700 | None:intergenic | 40.0% | |
| !! | CAAGGAAATGGTAATGGCAA+TGG | + | chr4_4:44919679-44919698 | Msa0682860:CDS | 40.0% |
| !! | GGCAATGATAACGGTAACAA+TGG | + | chr4_4:44919700-44919719 | Msa0682860:CDS | 40.0% |
| ! | GATAACGGTAACAATGGCAA+CGG | + | chr4_4:44919706-44919725 | Msa0682860:CDS | 40.0% |
| AACAACGGTAACAATGGCAA+CGG | + | chr4_4:44919736-44919755 | Msa0682860:CDS | 40.0% | |
| CAACGGTAAGGGAAATGATA+AGG | + | chr4_4:44919753-44919772 | Msa0682860:CDS | 40.0% | |
| AAGGGAAATGATAAGGACGA+AGG | + | chr4_4:44919760-44919779 | Msa0682860:CDS | 40.0% | |
| AAATGATAAGGACGAAGGCA+AGG | + | chr4_4:44919765-44919784 | Msa0682860:CDS | 40.0% | |
| GACAAAGACGACAAAGACAA+AGG | + | chr4_4:44919805-44919824 | Msa0682860:CDS | 40.0% | |
| CAAAGACAAAGGCAAAGGAA+AGG | + | chr4_4:44919816-44919835 | Msa0682860:CDS | 40.0% | |
| AAGACAAAGGCAAAGGAAAG+GGG | + | chr4_4:44919818-44919837 | Msa0682860:CDS | 40.0% | |
| TTTCAAGACACTTGTGTGTC+CGG | + | chr4_4:44919933-44919952 | Msa0682860:CDS | 40.0% | |
| GAAGCCAAAGAAGAACAAGA+AGG | + | chr4_4:44919972-44919991 | Msa0682860:CDS | 40.0% | |
| TGTGAACTTACACTTGCAAG+TGG | - | chr4_4:44920034-44920053 | None:intergenic | 40.0% | |
| GATTAAGATCAGACGATGCA+TGG | + | chr4_4:44920107-44920126 | Msa0682860:intron | 40.0% | |
| TAAGATGGCTCACATAAGTC+AGG | - | chr4_4:44920152-44920171 | None:intergenic | 40.0% | |
| AGACCAAATTGTGATGGCTA+CGG | + | chr4_4:44920497-44920516 | Msa0682860:CDS | 40.0% | |
| CAAATCAACGCACACTTCAT+CGG | + | chr4_4:44920623-44920642 | Msa0682860:CDS | 40.0% | |
| CAGCCAATAGAGTAACTCAA+TGG | + | chr4_4:44920729-44920748 | Msa0682860:CDS | 40.0% | |
| CAACCAAAGAGAAGTGATTG+TGG | + | chr4_4:44920841-44920860 | Msa0682860:CDS | 40.0% | |
| AGTGTTAGAGTGACAGTTTC+CGG | + | chr4_4:44920884-44920903 | Msa0682860:CDS | 40.0% | |
| ! | AGTTTCCGGTTTGCTTGAAA+TGG | + | chr4_4:44920898-44920917 | Msa0682860:CDS | 40.0% |
| AAGCATCATCTGATGGCAAT+TGG | - | chr4_4:44920973-44920992 | None:intergenic | 40.0% | |
| !! | TGAGCAAAAGCATCATCTGA+TGG | - | chr4_4:44920980-44920999 | None:intergenic | 40.0% |
| TATGTTAGTCCTGTCAAGAG+AGG | + | chr4_4:44921076-44921095 | Msa0682860:CDS | 40.0% | |
| ! | AGTATTGAGCAATTAGCCCT+TGG | - | chr4_4:44921201-44921220 | None:intergenic | 40.0% |
| ! | TGGAAGAAAGTGGAGCATCT+TGG | + | chr4_4:44919606-44919625 | Msa0682860:CDS | 45.0% |
| ! | AAGAAAGTGGAGCATCTTGG+TGG | + | chr4_4:44919609-44919628 | Msa0682860:CDS | 45.0% |
| ATGGAAGCTGTCATTGCTCA+AGG | + | chr4_4:44919655-44919674 | Msa0682860:CDS | 45.0% | |
| ATTGCTCAAGGCCAAGGAAA+TGG | + | chr4_4:44919667-44919686 | Msa0682860:CDS | 45.0% | |
| CAAGGCCAAGGAAATGGTAA+TGG | + | chr4_4:44919673-44919692 | Msa0682860:CDS | 45.0% | |
| GGTAACAATGGCAACGGTAA+TGG | + | chr4_4:44919712-44919731 | Msa0682860:CDS | 45.0% | |
| ! | GGCAACGGTAATGGTAACAA+CGG | + | chr4_4:44919721-44919740 | Msa0682860:CDS | 45.0% |
| GGTAACAATGGCAACGGTAA+GGG | + | chr4_4:44919712-44919731 | Msa0682860:CDS | 45.0% | |
| GACGACAAAGACAAAGGCAA+AGG | + | chr4_4:44919811-44919830 | Msa0682860:CDS | 45.0% | |
| AGGCAAAGGAAAGGGGAAAA+AGG | + | chr4_4:44919825-44919844 | Msa0682860:CDS | 45.0% | |
| AAGCTTGCCAGCTCTTCAAT+CGG | + | chr4_4:44919870-44919889 | Msa0682860:CDS | 45.0% | |
| ! | GTCCGGAAGAGTGTAAACAA+AGG | + | chr4_4:44919950-44919969 | Msa0682860:CDS | 45.0% |
| TTTGACGTAGTCACGCGATT+TGG | - | chr4_4:44920187-44920206 | None:intergenic | 45.0% | |
| GAACCGTAGCCATCACAATT+TGG | - | chr4_4:44920503-44920522 | None:intergenic | 45.0% | |
| TGTTACGATCCTCGCTTTGT+TGG | + | chr4_4:44920527-44920546 | Msa0682860:CDS | 45.0% | |
| GGTGTGATGTTCTACTTCCA+TGG | + | chr4_4:44920557-44920576 | Msa0682860:CDS | 45.0% | |
| TTCTACTTCCATGGAGCCAA+AGG | + | chr4_4:44920566-44920585 | Msa0682860:CDS | 45.0% | |
| TATGGCGAAGTTTCCTCCTT+TGG | - | chr4_4:44920585-44920604 | None:intergenic | 45.0% | |
| !! | CGATGAAGTGTGCGTTGATT+TGG | - | chr4_4:44920625-44920644 | None:intergenic | 45.0% |
| AAGGACTCGCGATTACACAT+GGG | + | chr4_4:44920661-44920680 | Msa0682860:CDS | 45.0% | |
| ! | GTTGCCACTTGACTTCCATT+CGG | - | chr4_4:44920825-44920844 | None:intergenic | 45.0% |
| GACATAAGGGTAAGGCCTAT+TGG | + | chr4_4:44920920-44920939 | Msa0682860:CDS | 45.0% | |
| GGTAAGGCCTATTGGAGAAA+AGG | + | chr4_4:44920928-44920947 | Msa0682860:CDS | 45.0% | |
| CAACAACATGCAAACTCTGC+AGG | + | chr4_4:44921155-44921174 | Msa0682860:CDS | 45.0% | |
| ! | TGGAAGAAAGTGGAGCATCT+TGG | + | chr4_4:44919606-44919625 | Msa0682860:CDS | 45.0% |
| ! | AAGAAAGTGGAGCATCTTGG+TGG | + | chr4_4:44919609-44919628 | Msa0682860:CDS | 45.0% |
| ATGGAAGCTGTCATTGCTCA+AGG | + | chr4_4:44919655-44919674 | Msa0682860:CDS | 45.0% | |
| ATTGCTCAAGGCCAAGGAAA+TGG | + | chr4_4:44919667-44919686 | Msa0682860:CDS | 45.0% | |
| CAAGGCCAAGGAAATGGTAA+TGG | + | chr4_4:44919673-44919692 | Msa0682860:CDS | 45.0% | |
| GGTAACAATGGCAACGGTAA+TGG | + | chr4_4:44919712-44919731 | Msa0682860:CDS | 45.0% | |
| ! | GGCAACGGTAATGGTAACAA+CGG | + | chr4_4:44919721-44919740 | Msa0682860:CDS | 45.0% |
| GGTAACAATGGCAACGGTAA+GGG | + | chr4_4:44919712-44919731 | Msa0682860:CDS | 45.0% | |
| GACGACAAAGACAAAGGCAA+AGG | + | chr4_4:44919811-44919830 | Msa0682860:CDS | 45.0% | |
| AGGCAAAGGAAAGGGGAAAA+AGG | + | chr4_4:44919825-44919844 | Msa0682860:CDS | 45.0% | |
| AAGCTTGCCAGCTCTTCAAT+CGG | + | chr4_4:44919870-44919889 | Msa0682860:CDS | 45.0% | |
| ! | GTCCGGAAGAGTGTAAACAA+AGG | + | chr4_4:44919950-44919969 | Msa0682860:CDS | 45.0% |
| TTTGACGTAGTCACGCGATT+TGG | - | chr4_4:44920187-44920206 | None:intergenic | 45.0% | |
| GAACCGTAGCCATCACAATT+TGG | - | chr4_4:44920503-44920522 | None:intergenic | 45.0% | |
| TGTTACGATCCTCGCTTTGT+TGG | + | chr4_4:44920527-44920546 | Msa0682860:CDS | 45.0% | |
| GGTGTGATGTTCTACTTCCA+TGG | + | chr4_4:44920557-44920576 | Msa0682860:CDS | 45.0% | |
| TTCTACTTCCATGGAGCCAA+AGG | + | chr4_4:44920566-44920585 | Msa0682860:CDS | 45.0% | |
| TATGGCGAAGTTTCCTCCTT+TGG | - | chr4_4:44920585-44920604 | None:intergenic | 45.0% | |
| !! | CGATGAAGTGTGCGTTGATT+TGG | - | chr4_4:44920625-44920644 | None:intergenic | 45.0% |
| AAGGACTCGCGATTACACAT+GGG | + | chr4_4:44920661-44920680 | Msa0682860:CDS | 45.0% | |
| ! | GTTGCCACTTGACTTCCATT+CGG | - | chr4_4:44920825-44920844 | None:intergenic | 45.0% |
| GACATAAGGGTAAGGCCTAT+TGG | + | chr4_4:44920920-44920939 | Msa0682860:CDS | 45.0% | |
| GGTAAGGCCTATTGGAGAAA+AGG | + | chr4_4:44920928-44920947 | Msa0682860:CDS | 45.0% | |
| CAACAACATGCAAACTCTGC+AGG | + | chr4_4:44921155-44921174 | Msa0682860:CDS | 45.0% | |
| CGGTAACAATGGCAACGGTA+AGG | + | chr4_4:44919711-44919730 | Msa0682860:CDS | 50.0% | |
| AAGGACGAAGGCAAGGACAA+AGG | + | chr4_4:44919772-44919791 | Msa0682860:CDS | 50.0% | |
| AGCTTGCCAGCTCTTCAATC+GGG | + | chr4_4:44919871-44919890 | Msa0682860:CDS | 50.0% | |
| TTCAATCGGGACAGGAACGA+GGG | + | chr4_4:44919884-44919903 | Msa0682860:CDS | 50.0% | |
| ! | TACGATCCTCGCTTTGTTGG+TGG | + | chr4_4:44920530-44920549 | Msa0682860:CDS | 50.0% |
| TACTTCCATGGAGCCAAAGG+AGG | + | chr4_4:44920569-44920588 | Msa0682860:CDS | 50.0% | |
| ! | AGTTTCCTCCTTTGGCTCCA+TGG | - | chr4_4:44920577-44920596 | None:intergenic | 50.0% |
| TTCATCGGTACTCGACCTCA+GGG | + | chr4_4:44920638-44920657 | Msa0682860:CDS | 50.0% | |
| GAAGGACTCGCGATTACACA+TGG | + | chr4_4:44920660-44920679 | Msa0682860:CDS | 50.0% | |
| CATTCGGCATCTCCATCAGA+AGG | - | chr4_4:44920809-44920828 | None:intergenic | 50.0% | |
| CTTCTGATGGAGATGCCGAA+TGG | + | chr4_4:44920807-44920826 | Msa0682860:CDS | 50.0% | |
| GATGCCGAATGGAAGTCAAG+TGG | + | chr4_4:44920818-44920837 | Msa0682860:CDS | 50.0% | |
| ATAGCAACGCCTCTCTTGAC+AGG | - | chr4_4:44921088-44921107 | None:intergenic | 50.0% | |
| !! | TTGCTATGCCGATGATGGGA+GGG | + | chr4_4:44921101-44921120 | Msa0682860:CDS | 50.0% |
| TTGTCTTCCCCTCCCATCAT+CGG | - | chr4_4:44921112-44921131 | None:intergenic | 50.0% | |
| ATTAGCCCTTGGCTAGTGGA+AGG | - | chr4_4:44921190-44921209 | None:intergenic | 50.0% | |
| AGCAATTAGCCCTTGGCTAG+TGG | - | chr4_4:44921194-44921213 | None:intergenic | 50.0% | |
| CGGTAACAATGGCAACGGTA+AGG | + | chr4_4:44919711-44919730 | Msa0682860:CDS | 50.0% | |
| AAGGACGAAGGCAAGGACAA+AGG | + | chr4_4:44919772-44919791 | Msa0682860:CDS | 50.0% | |
| AGCTTGCCAGCTCTTCAATC+GGG | + | chr4_4:44919871-44919890 | Msa0682860:CDS | 50.0% | |
| TTCAATCGGGACAGGAACGA+GGG | + | chr4_4:44919884-44919903 | Msa0682860:CDS | 50.0% | |
| ! | TACGATCCTCGCTTTGTTGG+TGG | + | chr4_4:44920530-44920549 | Msa0682860:CDS | 50.0% |
| TACTTCCATGGAGCCAAAGG+AGG | + | chr4_4:44920569-44920588 | Msa0682860:CDS | 50.0% | |
| ! | AGTTTCCTCCTTTGGCTCCA+TGG | - | chr4_4:44920577-44920596 | None:intergenic | 50.0% |
| TTCATCGGTACTCGACCTCA+GGG | + | chr4_4:44920638-44920657 | Msa0682860:CDS | 50.0% | |
| GAAGGACTCGCGATTACACA+TGG | + | chr4_4:44920660-44920679 | Msa0682860:CDS | 50.0% | |
| CATTCGGCATCTCCATCAGA+AGG | - | chr4_4:44920809-44920828 | None:intergenic | 50.0% | |
| CTTCTGATGGAGATGCCGAA+TGG | + | chr4_4:44920807-44920826 | Msa0682860:CDS | 50.0% | |
| GATGCCGAATGGAAGTCAAG+TGG | + | chr4_4:44920818-44920837 | Msa0682860:CDS | 50.0% | |
| ATAGCAACGCCTCTCTTGAC+AGG | - | chr4_4:44921088-44921107 | None:intergenic | 50.0% | |
| !! | TTGCTATGCCGATGATGGGA+GGG | + | chr4_4:44921101-44921120 | Msa0682860:CDS | 50.0% |
| TTGTCTTCCCCTCCCATCAT+CGG | - | chr4_4:44921112-44921131 | None:intergenic | 50.0% | |
| ATTAGCCCTTGGCTAGTGGA+AGG | - | chr4_4:44921190-44921209 | None:intergenic | 50.0% | |
| AGCAATTAGCCCTTGGCTAG+TGG | - | chr4_4:44921194-44921213 | None:intergenic | 50.0% | |
| GCTGTCATTGCTCAAGGCCA+AGG | + | chr4_4:44919661-44919680 | Msa0682860:CDS | 55.0% | |
| TCCTGTCCCGATTGAAGAGC+TGG | - | chr4_4:44919880-44919899 | None:intergenic | 55.0% | |
| CTTCAATCGGGACAGGAACG+AGG | + | chr4_4:44919883-44919902 | Msa0682860:CDS | 55.0% | |
| !! | CCTCGCTTTGTTGGTGGTGA+CGG | + | chr4_4:44920536-44920555 | Msa0682860:CDS | 55.0% |
| CTTCATCGGTACTCGACCTC+AGG | + | chr4_4:44920637-44920656 | Msa0682860:CDS | 55.0% | |
| TAATCGCGAGTCCTTCCCTG+AGG | - | chr4_4:44920656-44920675 | None:intergenic | 55.0% | |
| ! | AGGCGTTGCTATGCCGATGA+TGG | + | chr4_4:44921096-44921115 | Msa0682860:CDS | 55.0% |
| GGCGTTGCTATGCCGATGAT+GGG | + | chr4_4:44921097-44921116 | Msa0682860:CDS | 55.0% | |
| !! | GTTGCTATGCCGATGATGGG+AGG | + | chr4_4:44921100-44921119 | Msa0682860:CDS | 55.0% |
| !! | TGCTATGCCGATGATGGGAG+GGG | + | chr4_4:44921102-44921121 | Msa0682860:CDS | 55.0% |
| GCAAACTCTGCAGGTTCCAG+AGG | + | chr4_4:44921164-44921183 | Msa0682860:CDS | 55.0% | |
| AGAGGCCTTCCACTAGCCAA+GGG | + | chr4_4:44921182-44921201 | Msa0682860:CDS | 55.0% | |
| GCTGTCATTGCTCAAGGCCA+AGG | + | chr4_4:44919661-44919680 | Msa0682860:CDS | 55.0% | |
| TCCTGTCCCGATTGAAGAGC+TGG | - | chr4_4:44919880-44919899 | None:intergenic | 55.0% | |
| CTTCAATCGGGACAGGAACG+AGG | + | chr4_4:44919883-44919902 | Msa0682860:CDS | 55.0% | |
| !! | CCTCGCTTTGTTGGTGGTGA+CGG | + | chr4_4:44920536-44920555 | Msa0682860:CDS | 55.0% |
| CTTCATCGGTACTCGACCTC+AGG | + | chr4_4:44920637-44920656 | Msa0682860:CDS | 55.0% | |
| TAATCGCGAGTCCTTCCCTG+AGG | - | chr4_4:44920656-44920675 | None:intergenic | 55.0% | |
| ! | AGGCGTTGCTATGCCGATGA+TGG | + | chr4_4:44921096-44921115 | Msa0682860:CDS | 55.0% |
| GGCGTTGCTATGCCGATGAT+GGG | + | chr4_4:44921097-44921116 | Msa0682860:CDS | 55.0% | |
| !! | GTTGCTATGCCGATGATGGG+AGG | + | chr4_4:44921100-44921119 | Msa0682860:CDS | 55.0% |
| !! | TGCTATGCCGATGATGGGAG+GGG | + | chr4_4:44921102-44921121 | Msa0682860:CDS | 55.0% |
| GCAAACTCTGCAGGTTCCAG+AGG | + | chr4_4:44921164-44921183 | Msa0682860:CDS | 55.0% | |
| AGAGGCCTTCCACTAGCCAA+GGG | + | chr4_4:44921182-44921201 | Msa0682860:CDS | 55.0% | |
| GCCAGCTCTTCAATCGGGAC+AGG | + | chr4_4:44919876-44919895 | Msa0682860:CDS | 60.0% | |
| CCGTCACCACCAACAAAGCG+AGG | - | chr4_4:44920539-44920558 | None:intergenic | 60.0% | |
| TCGGTACTCGACCTCAGGGA+AGG | + | chr4_4:44920642-44920661 | Msa0682860:CDS | 60.0% | |
| CTTGGCTAGTGGAAGGCCTC+TGG | - | chr4_4:44921183-44921202 | None:intergenic | 60.0% | |
| CAGAGGCCTTCCACTAGCCA+AGG | + | chr4_4:44921181-44921200 | Msa0682860:CDS | 60.0% | |
| GCCAGCTCTTCAATCGGGAC+AGG | + | chr4_4:44919876-44919895 | Msa0682860:CDS | 60.0% | |
| CCGTCACCACCAACAAAGCG+AGG | - | chr4_4:44920539-44920558 | None:intergenic | 60.0% | |
| TCGGTACTCGACCTCAGGGA+AGG | + | chr4_4:44920642-44920661 | Msa0682860:CDS | 60.0% | |
| CTTGGCTAGTGGAAGGCCTC+TGG | - | chr4_4:44921183-44921202 | None:intergenic | 60.0% | |
| CAGAGGCCTTCCACTAGCCA+AGG | + | chr4_4:44921181-44921200 | Msa0682860:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 44919601 | 44921222 | 44919601 | ID=Msa0682860;Name=Msa0682860 |
| chr4_4 | mRNA | 44919601 | 44921222 | 44919601 | ID=Msa0682860-mRNA-1;Parent=Msa0682860;Name=Msa0682860-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0|1|1|1|2|0|390 |
| chr4_4 | exon | 44919601 | 44920042 | 44919601 | ID=Msa0682860-mRNA-1:exon:10863;Parent=Msa0682860-mRNA-1 |
| chr4_4 | exon | 44920492 | 44921222 | 44920492 | ID=Msa0682860-mRNA-1:exon:10864;Parent=Msa0682860-mRNA-1 |
| chr4_4 | CDS | 44919601 | 44920042 | 44919601 | ID=Msa0682860-mRNA-1:cds;Parent=Msa0682860-mRNA-1 |
| chr4_4 | CDS | 44920492 | 44921222 | 44920492 | ID=Msa0682860-mRNA-1:cds;Parent=Msa0682860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
