Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547340 | XP_003606402.1 | 99.344 | 305 | 2 | 0 | 86 | 390 | 91 | 395 | 0.0 | 618 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547340 | G7JPE4 | 99.344 | 305 | 2 | 0 | 86 | 390 | 91 | 395 | 0.0 | 618 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092220 | Msa0547340 | 0.802178 | 6.346059e-49 | -8.615850e-47 |
| Msa0547340 | Msa0602050 | 0.806531 | 7.861084e-50 | -8.615850e-47 |
| Msa0547340 | Msa0602070 | 0.977334 | 1.422959e-143 | -8.615850e-47 |
| Msa0547340 | Msa0643200 | 0.934382 | 4.401473e-96 | -8.615850e-47 |
| Msa0547340 | Msa0682860 | 0.972394 | 1.077028e-134 | -8.615850e-47 |
| Msa0547340 | Msa0689830 | 0.828996 | 6.590218e-55 | -8.615850e-47 |
| Msa0547340 | Msa1124210 | 0.823181 | 1.590118e-53 | -8.615850e-47 |
| Msa0547340 | Msa1225650 | -0.800385 | 1.477523e-48 | -8.615850e-47 |
| Msa0547340 | Msa1402010 | 0.804877 | 1.748934e-49 | -8.615850e-47 |
| Msa0547340 | Msa1413190 | -0.805057 | 1.603853e-49 | -8.615850e-47 |
| Msa0547340 | Msa1429510 | -0.805124 | 1.553105e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547340 | MtrunA17_Chr4g0029291 | 99.344 | 305 | 2 | 0 | 86 | 390 | 91 | 395 | 0.0 | 618 |
| Msa0547340 | MtrunA17_Chr4g0029271 | 83.120 | 391 | 60 | 2 | 1 | 390 | 1 | 386 | 0.0 | 596 |
| Msa0547340 | MtrunA17_Chr2g0318341 | 47.222 | 288 | 145 | 4 | 107 | 390 | 38 | 322 | 1.40e-96 | 291 |
| Msa0547340 | MtrunA17_Chr2g0318311 | 47.569 | 288 | 144 | 4 | 107 | 390 | 38 | 322 | 3.77e-96 | 290 |
| Msa0547340 | MtrunA17_Chr8g0360691 | 46.520 | 273 | 141 | 3 | 107 | 377 | 38 | 307 | 1.78e-88 | 271 |
| Msa0547340 | MtrunA17_Chr2g0292811 | 42.537 | 268 | 135 | 3 | 110 | 377 | 46 | 294 | 2.58e-76 | 239 |
| Msa0547340 | MtrunA17_Chr2g0287361 | 40.138 | 289 | 150 | 5 | 93 | 377 | 26 | 295 | 8.52e-76 | 238 |
| Msa0547340 | MtrunA17_Chr2g0292801 | 43.657 | 268 | 132 | 3 | 110 | 377 | 309 | 557 | 6.12e-75 | 243 |
| Msa0547340 | MtrunA17_Chr2g0292821 | 43.284 | 268 | 133 | 3 | 110 | 377 | 309 | 557 | 1.18e-73 | 240 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547340 | AT5G60530.1 | 68.136 | 295 | 92 | 2 | 86 | 378 | 135 | 429 | 1.90e-157 | 451 |
| Msa0547340 | AT5G60520.1 | 68.182 | 308 | 97 | 1 | 72 | 378 | 21 | 328 | 1.43e-153 | 437 |
| Msa0547340 | AT4G27400.1 | 44.561 | 285 | 152 | 4 | 106 | 387 | 35 | 316 | 1.51e-91 | 279 |
| Msa0547340 | AT5G54370.1 | 43.243 | 296 | 159 | 5 | 95 | 387 | 20 | 309 | 1.32e-89 | 274 |
| Msa0547340 | AT1G54890.1 | 43.403 | 288 | 156 | 5 | 95 | 377 | 26 | 311 | 2.57e-86 | 266 |
| Msa0547340 | AT3G19430.1 | 43.310 | 284 | 143 | 5 | 97 | 377 | 258 | 526 | 5.17e-77 | 248 |
| Msa0547340 | AT3G19430.2 | 43.310 | 284 | 143 | 5 | 97 | 377 | 281 | 549 | 7.19e-77 | 248 |
Find 106 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACTCTCTTACAGTAAAA+TGG | 0.185746 | 4_1:+40296225 | Msa0547340:CDS |
| TTATCCTTCTTGTTCTTCTT+TGG | 0.195002 | 4_1:-40295442 | None:intergenic |
| GAATTCATCGTCTGAAACTA+TGG | 0.242755 | 4_1:-40296063 | None:intergenic |
| TTTCCACAATCACTTCTCTT+TGG | 0.271483 | 4_1:-40296307 | None:intergenic |
| AGTGTTAGAGTGACAGTTTC+CGG | 0.303767 | 4_1:+40296347 | Msa0547340:CDS |
| TTCCTTTGTTTACACTCTTC+CGG | 0.316690 | 4_1:-40295418 | None:intergenic |
| CGATGAAGTGTGCGTTGATT+TGG | 0.331268 | 4_1:-40296085 | None:intergenic |
| AGGCAAAGGAAAGGGGAAAA+AGG | 0.348798 | 4_1:+40295291 | Msa0547340:CDS |
| CATTGCCATTACCATTTCCT+TGG | 0.358834 | 4_1:-40295144 | None:intergenic |
| TATGGCGAAGTTTCCTCCTT+TGG | 0.367101 | 4_1:-40296045 | None:intergenic |
| ATTCCATTGAGTTACTCTAT+TGG | 0.373593 | 4_1:-40296195 | None:intergenic |
| TTGAAAAGAGTGATGGAGTT+TGG | 0.380596 | 4_1:-40296598 | None:intergenic |
| AGTTTCCGGTTTGCTTGAAA+TGG | 0.381253 | 4_1:+40296361 | Msa0547340:CDS |
| GAACCGTAGCCATCACAATT+TGG | 0.391092 | 4_1:-40295963 | None:intergenic |
| GACATAAGGGTAAGGCCTAT+TGG | 0.392194 | 4_1:+40296383 | Msa0547340:CDS |
| AATCCTACAGATTCTATTGA+AGG | 0.405188 | 4_1:+40296488 | Msa0547340:CDS |
| AAAGACAAAGGCAAAGGAAA+GGG | 0.406086 | 4_1:+40295283 | Msa0547340:CDS |
| AAGAAGAACAAGAAGGATAA+AGG | 0.412069 | 4_1:+40295445 | Msa0547340:CDS |
| TTTCAAGACACTTGTGTGTC+CGG | 0.420772 | 4_1:+40295399 | Msa0547340:CDS |
| CTTGGCTAGTGGAAGGCCTC+TGG | 0.433828 | 4_1:-40296643 | None:intergenic |
| CTTCATCGGTACTCGACCTC+AGG | 0.443542 | 4_1:+40296100 | Msa0547340:CDS |
| GGTAAGGCCTATTGGAGAAA+AGG | 0.448306 | 4_1:+40296391 | Msa0547340:CDS |
| GTTTGCTTGAAATGGACATA+AGG | 0.452921 | 4_1:+40296369 | Msa0547340:CDS |
| CAACAACATGCAAACTCTGC+AGG | 0.455560 | 4_1:+40296618 | Msa0547340:CDS |
| AAGCTTGCCAGCTCTTCAAT+CGG | 0.459439 | 4_1:+40295336 | Msa0547340:CDS |
| AAGCATCATCTGATGGCAAT+TGG | 0.461439 | 4_1:-40296433 | None:intergenic |
| TCCTGTCCCGATTGAAGAGC+TGG | 0.462032 | 4_1:-40295343 | None:intergenic |
| TGACTCTCTTACAGTAAAAT+GGG | 0.465803 | 4_1:+40296226 | Msa0547340:CDS |
| CGGTAACAATGGCAACGGTA+AGG | 0.466846 | 4_1:+40295207 | Msa0547340:CDS |
| ATTGCTCAAGGCCAAGGAAA+TGG | 0.467146 | 4_1:+40295133 | Msa0547340:CDS |
| TATGTCCATTTCAAGCAAAC+CGG | 0.477542 | 4_1:-40296366 | None:intergenic |
| AGGCGTTGCTATGCCGATGA+TGG | 0.478306 | 4_1:+40296559 | Msa0547340:CDS |
| AGTTTCCTCCTTTGGCTCCA+TGG | 0.483265 | 4_1:-40296037 | None:intergenic |
| TTTGCTTGAAATGGACATAA+GGG | 0.483863 | 4_1:+40296370 | Msa0547340:CDS |
| TACGATCCTCGCTTTGTTGG+TGG | 0.487215 | 4_1:+40295993 | Msa0547340:CDS |
| TTAGTAACTATTCCTTCTGA+TGG | 0.487513 | 4_1:+40296257 | Msa0547340:CDS |
| TGTTACGATCCTCGCTTTGT+TGG | 0.488383 | 4_1:+40295990 | Msa0547340:CDS |
| AGAGAGTTCACCAAGATGGC+TGG | 0.489242 | 4_1:+40295052 | None:intergenic |
| AGCTTGCCAGCTCTTCAATC+GGG | 0.489857 | 4_1:+40295337 | Msa0547340:CDS |
| GTTGCCACTTGACTTCCATT+CGG | 0.489934 | 4_1:-40296285 | None:intergenic |
| GGTAACAATGGCAACGGTAA+TGG | 0.490289 | 4_1:+40295178 | Msa0547340:CDS |
| CCTCGCTTTGTTGGTGGTGA+CGG | 0.491282 | 4_1:+40295999 | Msa0547340:CDS |
| AGCAATTAGTCCTTGGCTAG+TGG | 0.496547 | 4_1:-40296654 | None:intergenic |
| CATGTTGTTGAAAAGAGTGA+TGG | 0.501148 | 4_1:-40296605 | None:intergenic |
| ATAGCAACGCCTCTCTTGAC+AGG | 0.501342 | 4_1:-40296548 | None:intergenic |
| AGTATTGAGCAATTAGTCCT+TGG | 0.501765 | 4_1:-40296661 | None:intergenic |
| CAAAGACAAAGGCAAAGGAA+AGG | 0.504829 | 4_1:+40295282 | Msa0547340:CDS |
| GCCAGCTCTTCAATCGGGAC+AGG | 0.506018 | 4_1:+40295342 | Msa0547340:CDS |
| TTGTCTTCCCCTCCCATCAT+CGG | 0.516690 | 4_1:-40296572 | None:intergenic |
| TGCTATGCCGATGATGGGAG+GGG | 0.520495 | 4_1:+40296565 | Msa0547340:CDS |
| TTGACAGGACTAACATAACT+TGG | 0.528654 | 4_1:-40296533 | None:intergenic |
| TTCTACTTCCATGGAGCCAA+AGG | 0.530261 | 4_1:+40296029 | Msa0547340:CDS |
| CAGCCAATAGAGTAACTCAA+TGG | 0.535035 | 4_1:+40296192 | Msa0547340:CDS |
| CAAGGCCAAGGAAATGGTAA+TGG | 0.535225 | 4_1:+40295139 | Msa0547340:CDS |
| GCTGTCATTGCTCAAGGCCA+AGG | 0.536607 | 4_1:+40295127 | Msa0547340:CDS |
| CAACGGTAAGGGAAATGATA+AGG | 0.536819 | 4_1:+40295219 | Msa0547340:CDS |
| CCAAGATGGCTGGAAGAAAG+TGG | 0.542641 | 4_1:+40295062 | None:intergenic |
| AATGGCAATGGCAATGATAA+CGG | 0.544965 | 4_1:+40295157 | Msa0547340:CDS |
| GGCGTTGCTATGCCGATGAT+GGG | 0.546171 | 4_1:+40296560 | Msa0547340:CDS |
| TTGCTATGCCGATGATGGGA+GGG | 0.557875 | 4_1:+40296564 | Msa0547340:CDS |
| AAGACAAAGGCAAAGGAAAG+GGG | 0.568570 | 4_1:+40295284 | Msa0547340:CDS |
| GGTAACAATGGCAACGGTAA+GGG | 0.569494 | 4_1:+40295208 | Msa0547340:CDS |
| CAAATCAACGCACACTTCAT+CGG | 0.574077 | 4_1:+40296086 | Msa0547340:CDS |
| GCAAACTCTGCAGGTTCCAG+AGG | 0.576301 | 4_1:+40296627 | Msa0547340:CDS |
| ATGGAAGCTGTCATTGCTCA+AGG | 0.577049 | 4_1:+40295121 | Msa0547340:CDS |
| AAGAAAGTGGAGCATCTTGG+TGG | 0.578600 | 4_1:+40295075 | Msa0547340:CDS |
| GAAGGACTCGCGATTACACA+TGG | 0.579448 | 4_1:+40296123 | Msa0547340:CDS |
| TGTGAACTTACACTTGCAAG+TGG | 0.579594 | 4_1:-40295497 | None:intergenic |
| GACAAAGACGACAAAGACAA+AGG | 0.583327 | 4_1:+40295271 | Msa0547340:CDS |
| CAAGGAAATGGTAATGGCAA+TGG | 0.586689 | 4_1:+40295145 | Msa0547340:CDS |
| CAACCAAAGAGAAGTGATTG+TGG | 0.588758 | 4_1:+40296304 | Msa0547340:CDS |
| GGCAATGATAACGGTAACAA+TGG | 0.590008 | 4_1:+40295166 | Msa0547340:CDS |
| TGGAAGAAAGTGGAGCATCT+TGG | 0.590363 | 4_1:+40295072 | Msa0547340:CDS |
| TTGAAATGGACATAAGGGTA+AGG | 0.592556 | 4_1:+40296375 | Msa0547340:CDS |
| GGTGTGATGTTCTACTTCCA+TGG | 0.592688 | 4_1:+40296020 | Msa0547340:CDS |
| GACGACAAAGACAAAGGCAA+AGG | 0.593756 | 4_1:+40295277 | Msa0547340:CDS |
| CTTCAATCGGGACAGGAACG+AGG | 0.594901 | 4_1:+40295349 | Msa0547340:CDS |
| ACTCCTTCAATAGAATCTGT+AGG | 0.597663 | 4_1:-40296491 | None:intergenic |
| GAAGCCAAAGAAGAACAAGA+AGG | 0.599717 | 4_1:+40295438 | Msa0547340:CDS |
| AGACCAAATTGTGATGGCTA+CGG | 0.601516 | 4_1:+40295960 | Msa0547340:CDS |
| CATTCGGCATCTCCATCAGA+AGG | 0.601517 | 4_1:-40296269 | None:intergenic |
| CTTCTGATGGAGATGCCGAA+TGG | 0.602970 | 4_1:+40296270 | Msa0547340:CDS |
| AATGGTAACAACGGTAACAA+TGG | 0.605001 | 4_1:+40295196 | Msa0547340:CDS |
| GTTAGAAGACCAAATTGTGA+TGG | 0.607905 | 4_1:+40295954 | Msa0547340:intron |
| TGAGCAAAAGCATCATCTGA+TGG | 0.608641 | 4_1:-40296440 | None:intergenic |
| AAATGATAAGGACGAAGGCA+AGG | 0.611935 | 4_1:+40295231 | Msa0547340:CDS |
| CAGAGGCCTTCCACTAGCCA+AGG | 0.613753 | 4_1:+40296644 | Msa0547340:CDS |
| GTTGCTATGCCGATGATGGG+AGG | 0.614523 | 4_1:+40296563 | Msa0547340:CDS |
| TACTTCCATGGAGCCAAAGG+AGG | 0.618849 | 4_1:+40296032 | Msa0547340:CDS |
| ATTAGTCCTTGGCTAGTGGA+AGG | 0.619757 | 4_1:-40296650 | None:intergenic |
| AAGGACGAAGGCAAGGACAA+AGG | 0.625848 | 4_1:+40295238 | Msa0547340:CDS |
| GATAACGGTAACAATGGCAA+CGG | 0.627056 | 4_1:+40295172 | Msa0547340:CDS |
| AACAACGGTAACAATGGCAA+CGG | 0.628721 | 4_1:+40295202 | Msa0547340:CDS |
| TTCATCGGTACTCGACCTCA+GGG | 0.629361 | 4_1:+40296101 | Msa0547340:CDS |
| TATTGGAGAAAAGGAAAACA+AGG | 0.632095 | 4_1:+40296400 | Msa0547340:CDS |
| TATGTTAGTCCTGTCAAGAG+AGG | 0.633793 | 4_1:+40296539 | Msa0547340:CDS |
| GGCAACGGTAATGGTAACAA+CGG | 0.636737 | 4_1:+40295187 | Msa0547340:CDS |
| TCGGTACTCGACCTCAGGGA+AGG | 0.642030 | 4_1:+40296105 | Msa0547340:CDS |
| TTCAATCGGGACAGGAACGA+GGG | 0.650568 | 4_1:+40295350 | Msa0547340:CDS |
| TCTCTTACAGTAAAATGGGA+CGG | 0.652194 | 4_1:+40296230 | Msa0547340:CDS |
| CCGTCACCACCAACAAAGCG+AGG | 0.670633 | 4_1:-40295999 | None:intergenic |
| GATGCCGAATGGAAGTCAAG+TGG | 0.682123 | 4_1:+40296281 | Msa0547340:CDS |
| AAGGGAAATGATAAGGACGA+AGG | 0.689947 | 4_1:+40295226 | Msa0547340:CDS |
| TAATCGCGAGTCCTTCCCTG+AGG | 0.723910 | 4_1:-40296116 | None:intergenic |
| AAGGACTCGCGATTACACAT+GGG | 0.725962 | 4_1:+40296124 | Msa0547340:CDS |
| GTCCGGAAGAGTGTAAACAA+AGG | 0.729113 | 4_1:+40295416 | Msa0547340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATCTATCTATATTTATATT+TGG | + | chr4_1:40295518-40295537 | Msa0547340:intron | 15.0% |
| !!! | TGTATATAAGAAGTATTAAA+TGG | - | chr4_1:40295752-40295771 | None:intergenic | 15.0% |
| !! | CATCTATCTATATTTATATT+TGG | + | chr4_1:40295518-40295537 | Msa0547340:intron | 15.0% |
| !!! | TGTATATAAGAAGTATTAAA+TGG | - | chr4_1:40295752-40295771 | None:intergenic | 15.0% |
| !! | GTATAATACTTGATCTATAT+TGG | + | chr4_1:40295548-40295567 | Msa0547340:intron | 20.0% |
| !! | ATTTAATTAGATATGATTGC+AGG | + | chr4_1:40295781-40295800 | Msa0547340:intron | 20.0% |
| !!! | ACAGTGTAAATTTTATTAAG+TGG | + | chr4_1:40295835-40295854 | Msa0547340:intron | 20.0% |
| !! | GTATAATACTTGATCTATAT+TGG | + | chr4_1:40295548-40295567 | Msa0547340:intron | 20.0% |
| !! | ATTTAATTAGATATGATTGC+AGG | + | chr4_1:40295781-40295800 | Msa0547340:intron | 20.0% |
| !!! | ACAGTGTAAATTTTATTAAG+TGG | + | chr4_1:40295835-40295854 | Msa0547340:intron | 20.0% |
| ! | AGAGATGAGTAAGATAAAAA+AGG | - | chr4_1:40295101-40295120 | None:intergenic | 25.0% |
| !! | TTTTATCTTACTCATCTCTA+TGG | + | chr4_1:40295102-40295121 | Msa0547340:CDS | 25.0% |
| !! | ATGTAGATTTTGTCTATGAT+AGG | + | chr4_1:40295699-40295718 | Msa0547340:intron | 25.0% |
| !! | TGTAGATTTTGTCTATGATA+GGG | + | chr4_1:40295700-40295719 | Msa0547340:intron | 25.0% |
| ! | AGAGATGAGTAAGATAAAAA+AGG | - | chr4_1:40295101-40295120 | None:intergenic | 25.0% |
| !! | TTTTATCTTACTCATCTCTA+TGG | + | chr4_1:40295102-40295121 | Msa0547340:CDS | 25.0% |
| !! | ATGTAGATTTTGTCTATGAT+AGG | + | chr4_1:40295699-40295718 | Msa0547340:intron | 25.0% |
| !! | TGTAGATTTTGTCTATGATA+GGG | + | chr4_1:40295700-40295719 | Msa0547340:intron | 25.0% |
| ! | AATGACAAGTATTTTGTGCT+TGG | - | chr4_1:40295381-40295400 | None:intergenic | 30.0% |
| TTATCCTTCTTGTTCTTCTT+TGG | - | chr4_1:40295445-40295464 | None:intergenic | 30.0% | |
| AAGAAGAACAAGAAGGATAA+AGG | + | chr4_1:40295445-40295464 | Msa0547340:CDS | 30.0% | |
| ! | CATGGTCCAACTTTATATTT+TGG | + | chr4_1:40295588-40295607 | Msa0547340:intron | 30.0% |
| TCAGGTCCAAAATATAAAGT+TGG | - | chr4_1:40295597-40295616 | None:intergenic | 30.0% | |
| TGGATCATCATAAGATAAGA+TGG | - | chr4_1:40295630-40295649 | None:intergenic | 30.0% | |
| TATGAAATCTGATTAGACGA+CGG | + | chr4_1:40295864-40295883 | Msa0547340:intron | 30.0% | |
| ATTCCATTGAGTTACTCTAT+TGG | - | chr4_1:40296198-40296217 | None:intergenic | 30.0% | |
| TTGACTCTCTTACAGTAAAA+TGG | + | chr4_1:40296225-40296244 | Msa0547340:CDS | 30.0% | |
| TGACTCTCTTACAGTAAAAT+GGG | + | chr4_1:40296226-40296245 | Msa0547340:CDS | 30.0% | |
| TTAGTAACTATTCCTTCTGA+TGG | + | chr4_1:40296257-40296276 | Msa0547340:CDS | 30.0% | |
| TTTGCTTGAAATGGACATAA+GGG | + | chr4_1:40296370-40296389 | Msa0547340:CDS | 30.0% | |
| ! | TTGTTTTCCTTTTCTCCAAT+AGG | - | chr4_1:40296401-40296420 | None:intergenic | 30.0% |
| TATTGGAGAAAAGGAAAACA+AGG | + | chr4_1:40296400-40296419 | Msa0547340:CDS | 30.0% | |
| AATCCTACAGATTCTATTGA+AGG | + | chr4_1:40296488-40296507 | Msa0547340:CDS | 30.0% | |
| ! | GATTCTATTGAAGGAGTTTT+AGG | + | chr4_1:40296497-40296516 | Msa0547340:CDS | 30.0% |
| !!! | GAGTTTTAGGTCAAACTTAT+AGG | + | chr4_1:40296510-40296529 | Msa0547340:CDS | 30.0% |
| ! | AATGACAAGTATTTTGTGCT+TGG | - | chr4_1:40295381-40295400 | None:intergenic | 30.0% |
| TTATCCTTCTTGTTCTTCTT+TGG | - | chr4_1:40295445-40295464 | None:intergenic | 30.0% | |
| AAGAAGAACAAGAAGGATAA+AGG | + | chr4_1:40295445-40295464 | Msa0547340:CDS | 30.0% | |
| ! | CATGGTCCAACTTTATATTT+TGG | + | chr4_1:40295588-40295607 | Msa0547340:intron | 30.0% |
| TCAGGTCCAAAATATAAAGT+TGG | - | chr4_1:40295597-40295616 | None:intergenic | 30.0% | |
| TGGATCATCATAAGATAAGA+TGG | - | chr4_1:40295630-40295649 | None:intergenic | 30.0% | |
| TATGAAATCTGATTAGACGA+CGG | + | chr4_1:40295864-40295883 | Msa0547340:intron | 30.0% | |
| ATTCCATTGAGTTACTCTAT+TGG | - | chr4_1:40296198-40296217 | None:intergenic | 30.0% | |
| TTGACTCTCTTACAGTAAAA+TGG | + | chr4_1:40296225-40296244 | Msa0547340:CDS | 30.0% | |
| TGACTCTCTTACAGTAAAAT+GGG | + | chr4_1:40296226-40296245 | Msa0547340:CDS | 30.0% | |
| TTAGTAACTATTCCTTCTGA+TGG | + | chr4_1:40296257-40296276 | Msa0547340:CDS | 30.0% | |
| TTTGCTTGAAATGGACATAA+GGG | + | chr4_1:40296370-40296389 | Msa0547340:CDS | 30.0% | |
| ! | TTGTTTTCCTTTTCTCCAAT+AGG | - | chr4_1:40296401-40296420 | None:intergenic | 30.0% |
| TATTGGAGAAAAGGAAAACA+AGG | + | chr4_1:40296400-40296419 | Msa0547340:CDS | 30.0% | |
| AATCCTACAGATTCTATTGA+AGG | + | chr4_1:40296488-40296507 | Msa0547340:CDS | 30.0% | |
| ! | GATTCTATTGAAGGAGTTTT+AGG | + | chr4_1:40296497-40296516 | Msa0547340:CDS | 30.0% |
| !!! | GAGTTTTAGGTCAAACTTAT+AGG | + | chr4_1:40296510-40296529 | Msa0547340:CDS | 30.0% |
| AATGGCAATGGCAATGATAA+CGG | + | chr4_1:40295157-40295176 | Msa0547340:CDS | 35.0% | |
| AATGGTAACAACGGTAACAA+TGG | + | chr4_1:40295196-40295215 | Msa0547340:CDS | 35.0% | |
| AAAGACAAAGGCAAAGGAAA+GGG | + | chr4_1:40295283-40295302 | Msa0547340:CDS | 35.0% | |
| ! | TGGCAAGCTTTCATATTTTG+AGG | - | chr4_1:40295326-40295345 | None:intergenic | 35.0% |
| ! | TTCCTTTGTTTACACTCTTC+CGG | - | chr4_1:40295421-40295440 | None:intergenic | 35.0% |
| !! | ATTAAATGGACTAGCATGAG+AGG | - | chr4_1:40295738-40295757 | None:intergenic | 35.0% |
| GTTAGAAGACCAAATTGTGA+TGG | + | chr4_1:40295954-40295973 | Msa0547340:intron | 35.0% | |
| ! | GAATTCATCGTCTGAAACTA+TGG | - | chr4_1:40296066-40296085 | None:intergenic | 35.0% |
| TCTCTTACAGTAAAATGGGA+CGG | + | chr4_1:40296230-40296249 | Msa0547340:CDS | 35.0% | |
| TTTCCACAATCACTTCTCTT+TGG | - | chr4_1:40296310-40296329 | None:intergenic | 35.0% | |
| TATGTCCATTTCAAGCAAAC+CGG | - | chr4_1:40296369-40296388 | None:intergenic | 35.0% | |
| GTTTGCTTGAAATGGACATA+AGG | + | chr4_1:40296369-40296388 | Msa0547340:CDS | 35.0% | |
| TTGAAATGGACATAAGGGTA+AGG | + | chr4_1:40296375-40296394 | Msa0547340:CDS | 35.0% | |
| ! | AGATGATGCTTTTGCTCATT+TGG | + | chr4_1:40296445-40296464 | Msa0547340:CDS | 35.0% |
| ACTCCTTCAATAGAATCTGT+AGG | - | chr4_1:40296494-40296513 | None:intergenic | 35.0% | |
| TTGACAGGACTAACATAACT+TGG | - | chr4_1:40296536-40296555 | None:intergenic | 35.0% | |
| ! | TTGAAAAGAGTGATGGAGTT+TGG | - | chr4_1:40296601-40296620 | None:intergenic | 35.0% |
| CATGTTGTTGAAAAGAGTGA+TGG | - | chr4_1:40296608-40296627 | None:intergenic | 35.0% | |
| ! | AGTATTGAGCAATTAGTCCT+TGG | - | chr4_1:40296664-40296683 | None:intergenic | 35.0% |
| AATGGCAATGGCAATGATAA+CGG | + | chr4_1:40295157-40295176 | Msa0547340:CDS | 35.0% | |
| AATGGTAACAACGGTAACAA+TGG | + | chr4_1:40295196-40295215 | Msa0547340:CDS | 35.0% | |
| AAAGACAAAGGCAAAGGAAA+GGG | + | chr4_1:40295283-40295302 | Msa0547340:CDS | 35.0% | |
| ! | TGGCAAGCTTTCATATTTTG+AGG | - | chr4_1:40295326-40295345 | None:intergenic | 35.0% |
| ! | TTCCTTTGTTTACACTCTTC+CGG | - | chr4_1:40295421-40295440 | None:intergenic | 35.0% |
| !! | ATTAAATGGACTAGCATGAG+AGG | - | chr4_1:40295738-40295757 | None:intergenic | 35.0% |
| GTTAGAAGACCAAATTGTGA+TGG | + | chr4_1:40295954-40295973 | Msa0547340:intron | 35.0% | |
| ! | GAATTCATCGTCTGAAACTA+TGG | - | chr4_1:40296066-40296085 | None:intergenic | 35.0% |
| TCTCTTACAGTAAAATGGGA+CGG | + | chr4_1:40296230-40296249 | Msa0547340:CDS | 35.0% | |
| TTTCCACAATCACTTCTCTT+TGG | - | chr4_1:40296310-40296329 | None:intergenic | 35.0% | |
| TATGTCCATTTCAAGCAAAC+CGG | - | chr4_1:40296369-40296388 | None:intergenic | 35.0% | |
| GTTTGCTTGAAATGGACATA+AGG | + | chr4_1:40296369-40296388 | Msa0547340:CDS | 35.0% | |
| TTGAAATGGACATAAGGGTA+AGG | + | chr4_1:40296375-40296394 | Msa0547340:CDS | 35.0% | |
| ! | AGATGATGCTTTTGCTCATT+TGG | + | chr4_1:40296445-40296464 | Msa0547340:CDS | 35.0% |
| ACTCCTTCAATAGAATCTGT+AGG | - | chr4_1:40296494-40296513 | None:intergenic | 35.0% | |
| TTGACAGGACTAACATAACT+TGG | - | chr4_1:40296536-40296555 | None:intergenic | 35.0% | |
| ! | TTGAAAAGAGTGATGGAGTT+TGG | - | chr4_1:40296601-40296620 | None:intergenic | 35.0% |
| CATGTTGTTGAAAAGAGTGA+TGG | - | chr4_1:40296608-40296627 | None:intergenic | 35.0% | |
| ! | AGTATTGAGCAATTAGTCCT+TGG | - | chr4_1:40296664-40296683 | None:intergenic | 35.0% |
| CATTGCCATTACCATTTCCT+TGG | - | chr4_1:40295147-40295166 | None:intergenic | 40.0% | |
| !! | CAAGGAAATGGTAATGGCAA+TGG | + | chr4_1:40295145-40295164 | Msa0547340:CDS | 40.0% |
| !! | GGCAATGATAACGGTAACAA+TGG | + | chr4_1:40295166-40295185 | Msa0547340:CDS | 40.0% |
| ! | GATAACGGTAACAATGGCAA+CGG | + | chr4_1:40295172-40295191 | Msa0547340:CDS | 40.0% |
| AACAACGGTAACAATGGCAA+CGG | + | chr4_1:40295202-40295221 | Msa0547340:CDS | 40.0% | |
| CAACGGTAAGGGAAATGATA+AGG | + | chr4_1:40295219-40295238 | Msa0547340:CDS | 40.0% | |
| AAGGGAAATGATAAGGACGA+AGG | + | chr4_1:40295226-40295245 | Msa0547340:CDS | 40.0% | |
| AAATGATAAGGACGAAGGCA+AGG | + | chr4_1:40295231-40295250 | Msa0547340:CDS | 40.0% | |
| GACAAAGACGACAAAGACAA+AGG | + | chr4_1:40295271-40295290 | Msa0547340:CDS | 40.0% | |
| CAAAGACAAAGGCAAAGGAA+AGG | + | chr4_1:40295282-40295301 | Msa0547340:CDS | 40.0% | |
| AAGACAAAGGCAAAGGAAAG+GGG | + | chr4_1:40295284-40295303 | Msa0547340:CDS | 40.0% | |
| TTTCAAGACACTTGTGTGTC+CGG | + | chr4_1:40295399-40295418 | Msa0547340:CDS | 40.0% | |
| GAAGCCAAAGAAGAACAAGA+AGG | + | chr4_1:40295438-40295457 | Msa0547340:CDS | 40.0% | |
| TGTGAACTTACACTTGCAAG+TGG | - | chr4_1:40295500-40295519 | None:intergenic | 40.0% | |
| GATTAAGATCAGACGATGCA+TGG | + | chr4_1:40295570-40295589 | Msa0547340:intron | 40.0% | |
| TAAGATGGCTCACATAAGTC+AGG | - | chr4_1:40295615-40295634 | None:intergenic | 40.0% | |
| AGACCAAATTGTGATGGCTA+CGG | + | chr4_1:40295960-40295979 | Msa0547340:CDS | 40.0% | |
| CAAATCAACGCACACTTCAT+CGG | + | chr4_1:40296086-40296105 | Msa0547340:CDS | 40.0% | |
| CAGCCAATAGAGTAACTCAA+TGG | + | chr4_1:40296192-40296211 | Msa0547340:CDS | 40.0% | |
| CAACCAAAGAGAAGTGATTG+TGG | + | chr4_1:40296304-40296323 | Msa0547340:CDS | 40.0% | |
| AGTGTTAGAGTGACAGTTTC+CGG | + | chr4_1:40296347-40296366 | Msa0547340:CDS | 40.0% | |
| ! | AGTTTCCGGTTTGCTTGAAA+TGG | + | chr4_1:40296361-40296380 | Msa0547340:CDS | 40.0% |
| AAGCATCATCTGATGGCAAT+TGG | - | chr4_1:40296436-40296455 | None:intergenic | 40.0% | |
| !! | TGAGCAAAAGCATCATCTGA+TGG | - | chr4_1:40296443-40296462 | None:intergenic | 40.0% |
| TATGTTAGTCCTGTCAAGAG+AGG | + | chr4_1:40296539-40296558 | Msa0547340:CDS | 40.0% | |
| CATTGCCATTACCATTTCCT+TGG | - | chr4_1:40295147-40295166 | None:intergenic | 40.0% | |
| !! | CAAGGAAATGGTAATGGCAA+TGG | + | chr4_1:40295145-40295164 | Msa0547340:CDS | 40.0% |
| !! | GGCAATGATAACGGTAACAA+TGG | + | chr4_1:40295166-40295185 | Msa0547340:CDS | 40.0% |
| ! | GATAACGGTAACAATGGCAA+CGG | + | chr4_1:40295172-40295191 | Msa0547340:CDS | 40.0% |
| AACAACGGTAACAATGGCAA+CGG | + | chr4_1:40295202-40295221 | Msa0547340:CDS | 40.0% | |
| CAACGGTAAGGGAAATGATA+AGG | + | chr4_1:40295219-40295238 | Msa0547340:CDS | 40.0% | |
| AAGGGAAATGATAAGGACGA+AGG | + | chr4_1:40295226-40295245 | Msa0547340:CDS | 40.0% | |
| AAATGATAAGGACGAAGGCA+AGG | + | chr4_1:40295231-40295250 | Msa0547340:CDS | 40.0% | |
| GACAAAGACGACAAAGACAA+AGG | + | chr4_1:40295271-40295290 | Msa0547340:CDS | 40.0% | |
| CAAAGACAAAGGCAAAGGAA+AGG | + | chr4_1:40295282-40295301 | Msa0547340:CDS | 40.0% | |
| AAGACAAAGGCAAAGGAAAG+GGG | + | chr4_1:40295284-40295303 | Msa0547340:CDS | 40.0% | |
| TTTCAAGACACTTGTGTGTC+CGG | + | chr4_1:40295399-40295418 | Msa0547340:CDS | 40.0% | |
| GAAGCCAAAGAAGAACAAGA+AGG | + | chr4_1:40295438-40295457 | Msa0547340:CDS | 40.0% | |
| TGTGAACTTACACTTGCAAG+TGG | - | chr4_1:40295500-40295519 | None:intergenic | 40.0% | |
| GATTAAGATCAGACGATGCA+TGG | + | chr4_1:40295570-40295589 | Msa0547340:intron | 40.0% | |
| TAAGATGGCTCACATAAGTC+AGG | - | chr4_1:40295615-40295634 | None:intergenic | 40.0% | |
| AGACCAAATTGTGATGGCTA+CGG | + | chr4_1:40295960-40295979 | Msa0547340:CDS | 40.0% | |
| CAAATCAACGCACACTTCAT+CGG | + | chr4_1:40296086-40296105 | Msa0547340:CDS | 40.0% | |
| CAGCCAATAGAGTAACTCAA+TGG | + | chr4_1:40296192-40296211 | Msa0547340:CDS | 40.0% | |
| CAACCAAAGAGAAGTGATTG+TGG | + | chr4_1:40296304-40296323 | Msa0547340:CDS | 40.0% | |
| AGTGTTAGAGTGACAGTTTC+CGG | + | chr4_1:40296347-40296366 | Msa0547340:CDS | 40.0% | |
| ! | AGTTTCCGGTTTGCTTGAAA+TGG | + | chr4_1:40296361-40296380 | Msa0547340:CDS | 40.0% |
| AAGCATCATCTGATGGCAAT+TGG | - | chr4_1:40296436-40296455 | None:intergenic | 40.0% | |
| !! | TGAGCAAAAGCATCATCTGA+TGG | - | chr4_1:40296443-40296462 | None:intergenic | 40.0% |
| TATGTTAGTCCTGTCAAGAG+AGG | + | chr4_1:40296539-40296558 | Msa0547340:CDS | 40.0% | |
| ! | TGGAAGAAAGTGGAGCATCT+TGG | + | chr4_1:40295072-40295091 | Msa0547340:CDS | 45.0% |
| ! | AAGAAAGTGGAGCATCTTGG+TGG | + | chr4_1:40295075-40295094 | Msa0547340:CDS | 45.0% |
| ATGGAAGCTGTCATTGCTCA+AGG | + | chr4_1:40295121-40295140 | Msa0547340:CDS | 45.0% | |
| ATTGCTCAAGGCCAAGGAAA+TGG | + | chr4_1:40295133-40295152 | Msa0547340:CDS | 45.0% | |
| CAAGGCCAAGGAAATGGTAA+TGG | + | chr4_1:40295139-40295158 | Msa0547340:CDS | 45.0% | |
| GGTAACAATGGCAACGGTAA+TGG | + | chr4_1:40295178-40295197 | Msa0547340:CDS | 45.0% | |
| ! | GGCAACGGTAATGGTAACAA+CGG | + | chr4_1:40295187-40295206 | Msa0547340:CDS | 45.0% |
| GGTAACAATGGCAACGGTAA+GGG | + | chr4_1:40295178-40295197 | Msa0547340:CDS | 45.0% | |
| GACGACAAAGACAAAGGCAA+AGG | + | chr4_1:40295277-40295296 | Msa0547340:CDS | 45.0% | |
| AGGCAAAGGAAAGGGGAAAA+AGG | + | chr4_1:40295291-40295310 | Msa0547340:CDS | 45.0% | |
| AAGCTTGCCAGCTCTTCAAT+CGG | + | chr4_1:40295336-40295355 | Msa0547340:CDS | 45.0% | |
| ! | GTCCGGAAGAGTGTAAACAA+AGG | + | chr4_1:40295416-40295435 | Msa0547340:CDS | 45.0% |
| TTTGACGTAGTCACGCGATT+TGG | - | chr4_1:40295650-40295669 | None:intergenic | 45.0% | |
| GAACCGTAGCCATCACAATT+TGG | - | chr4_1:40295966-40295985 | None:intergenic | 45.0% | |
| TGTTACGATCCTCGCTTTGT+TGG | + | chr4_1:40295990-40296009 | Msa0547340:CDS | 45.0% | |
| GGTGTGATGTTCTACTTCCA+TGG | + | chr4_1:40296020-40296039 | Msa0547340:CDS | 45.0% | |
| TTCTACTTCCATGGAGCCAA+AGG | + | chr4_1:40296029-40296048 | Msa0547340:CDS | 45.0% | |
| TATGGCGAAGTTTCCTCCTT+TGG | - | chr4_1:40296048-40296067 | None:intergenic | 45.0% | |
| !! | CGATGAAGTGTGCGTTGATT+TGG | - | chr4_1:40296088-40296107 | None:intergenic | 45.0% |
| AAGGACTCGCGATTACACAT+GGG | + | chr4_1:40296124-40296143 | Msa0547340:CDS | 45.0% | |
| ! | GTTGCCACTTGACTTCCATT+CGG | - | chr4_1:40296288-40296307 | None:intergenic | 45.0% |
| GACATAAGGGTAAGGCCTAT+TGG | + | chr4_1:40296383-40296402 | Msa0547340:CDS | 45.0% | |
| GGTAAGGCCTATTGGAGAAA+AGG | + | chr4_1:40296391-40296410 | Msa0547340:CDS | 45.0% | |
| CAACAACATGCAAACTCTGC+AGG | + | chr4_1:40296618-40296637 | Msa0547340:CDS | 45.0% | |
| ATTAGTCCTTGGCTAGTGGA+AGG | - | chr4_1:40296653-40296672 | None:intergenic | 45.0% | |
| AGCAATTAGTCCTTGGCTAG+TGG | - | chr4_1:40296657-40296676 | None:intergenic | 45.0% | |
| ! | TGGAAGAAAGTGGAGCATCT+TGG | + | chr4_1:40295072-40295091 | Msa0547340:CDS | 45.0% |
| ! | AAGAAAGTGGAGCATCTTGG+TGG | + | chr4_1:40295075-40295094 | Msa0547340:CDS | 45.0% |
| ATGGAAGCTGTCATTGCTCA+AGG | + | chr4_1:40295121-40295140 | Msa0547340:CDS | 45.0% | |
| ATTGCTCAAGGCCAAGGAAA+TGG | + | chr4_1:40295133-40295152 | Msa0547340:CDS | 45.0% | |
| CAAGGCCAAGGAAATGGTAA+TGG | + | chr4_1:40295139-40295158 | Msa0547340:CDS | 45.0% | |
| GGTAACAATGGCAACGGTAA+TGG | + | chr4_1:40295178-40295197 | Msa0547340:CDS | 45.0% | |
| ! | GGCAACGGTAATGGTAACAA+CGG | + | chr4_1:40295187-40295206 | Msa0547340:CDS | 45.0% |
| GGTAACAATGGCAACGGTAA+GGG | + | chr4_1:40295178-40295197 | Msa0547340:CDS | 45.0% | |
| GACGACAAAGACAAAGGCAA+AGG | + | chr4_1:40295277-40295296 | Msa0547340:CDS | 45.0% | |
| AGGCAAAGGAAAGGGGAAAA+AGG | + | chr4_1:40295291-40295310 | Msa0547340:CDS | 45.0% | |
| AAGCTTGCCAGCTCTTCAAT+CGG | + | chr4_1:40295336-40295355 | Msa0547340:CDS | 45.0% | |
| ! | GTCCGGAAGAGTGTAAACAA+AGG | + | chr4_1:40295416-40295435 | Msa0547340:CDS | 45.0% |
| TTTGACGTAGTCACGCGATT+TGG | - | chr4_1:40295650-40295669 | None:intergenic | 45.0% | |
| GAACCGTAGCCATCACAATT+TGG | - | chr4_1:40295966-40295985 | None:intergenic | 45.0% | |
| TGTTACGATCCTCGCTTTGT+TGG | + | chr4_1:40295990-40296009 | Msa0547340:CDS | 45.0% | |
| GGTGTGATGTTCTACTTCCA+TGG | + | chr4_1:40296020-40296039 | Msa0547340:CDS | 45.0% | |
| TTCTACTTCCATGGAGCCAA+AGG | + | chr4_1:40296029-40296048 | Msa0547340:CDS | 45.0% | |
| TATGGCGAAGTTTCCTCCTT+TGG | - | chr4_1:40296048-40296067 | None:intergenic | 45.0% | |
| !! | CGATGAAGTGTGCGTTGATT+TGG | - | chr4_1:40296088-40296107 | None:intergenic | 45.0% |
| AAGGACTCGCGATTACACAT+GGG | + | chr4_1:40296124-40296143 | Msa0547340:CDS | 45.0% | |
| ! | GTTGCCACTTGACTTCCATT+CGG | - | chr4_1:40296288-40296307 | None:intergenic | 45.0% |
| GACATAAGGGTAAGGCCTAT+TGG | + | chr4_1:40296383-40296402 | Msa0547340:CDS | 45.0% | |
| GGTAAGGCCTATTGGAGAAA+AGG | + | chr4_1:40296391-40296410 | Msa0547340:CDS | 45.0% | |
| CAACAACATGCAAACTCTGC+AGG | + | chr4_1:40296618-40296637 | Msa0547340:CDS | 45.0% | |
| ATTAGTCCTTGGCTAGTGGA+AGG | - | chr4_1:40296653-40296672 | None:intergenic | 45.0% | |
| AGCAATTAGTCCTTGGCTAG+TGG | - | chr4_1:40296657-40296676 | None:intergenic | 45.0% | |
| CGGTAACAATGGCAACGGTA+AGG | + | chr4_1:40295177-40295196 | Msa0547340:CDS | 50.0% | |
| AAGGACGAAGGCAAGGACAA+AGG | + | chr4_1:40295238-40295257 | Msa0547340:CDS | 50.0% | |
| AGCTTGCCAGCTCTTCAATC+GGG | + | chr4_1:40295337-40295356 | Msa0547340:CDS | 50.0% | |
| TTCAATCGGGACAGGAACGA+GGG | + | chr4_1:40295350-40295369 | Msa0547340:CDS | 50.0% | |
| ! | TACGATCCTCGCTTTGTTGG+TGG | + | chr4_1:40295993-40296012 | Msa0547340:CDS | 50.0% |
| TACTTCCATGGAGCCAAAGG+AGG | + | chr4_1:40296032-40296051 | Msa0547340:CDS | 50.0% | |
| ! | AGTTTCCTCCTTTGGCTCCA+TGG | - | chr4_1:40296040-40296059 | None:intergenic | 50.0% |
| TTCATCGGTACTCGACCTCA+GGG | + | chr4_1:40296101-40296120 | Msa0547340:CDS | 50.0% | |
| GAAGGACTCGCGATTACACA+TGG | + | chr4_1:40296123-40296142 | Msa0547340:CDS | 50.0% | |
| CATTCGGCATCTCCATCAGA+AGG | - | chr4_1:40296272-40296291 | None:intergenic | 50.0% | |
| CTTCTGATGGAGATGCCGAA+TGG | + | chr4_1:40296270-40296289 | Msa0547340:CDS | 50.0% | |
| GATGCCGAATGGAAGTCAAG+TGG | + | chr4_1:40296281-40296300 | Msa0547340:CDS | 50.0% | |
| ATAGCAACGCCTCTCTTGAC+AGG | - | chr4_1:40296551-40296570 | None:intergenic | 50.0% | |
| !! | TTGCTATGCCGATGATGGGA+GGG | + | chr4_1:40296564-40296583 | Msa0547340:CDS | 50.0% |
| TTGTCTTCCCCTCCCATCAT+CGG | - | chr4_1:40296575-40296594 | None:intergenic | 50.0% | |
| CGGTAACAATGGCAACGGTA+AGG | + | chr4_1:40295177-40295196 | Msa0547340:CDS | 50.0% | |
| AAGGACGAAGGCAAGGACAA+AGG | + | chr4_1:40295238-40295257 | Msa0547340:CDS | 50.0% | |
| AGCTTGCCAGCTCTTCAATC+GGG | + | chr4_1:40295337-40295356 | Msa0547340:CDS | 50.0% | |
| TTCAATCGGGACAGGAACGA+GGG | + | chr4_1:40295350-40295369 | Msa0547340:CDS | 50.0% | |
| ! | TACGATCCTCGCTTTGTTGG+TGG | + | chr4_1:40295993-40296012 | Msa0547340:CDS | 50.0% |
| TACTTCCATGGAGCCAAAGG+AGG | + | chr4_1:40296032-40296051 | Msa0547340:CDS | 50.0% | |
| ! | AGTTTCCTCCTTTGGCTCCA+TGG | - | chr4_1:40296040-40296059 | None:intergenic | 50.0% |
| TTCATCGGTACTCGACCTCA+GGG | + | chr4_1:40296101-40296120 | Msa0547340:CDS | 50.0% | |
| GAAGGACTCGCGATTACACA+TGG | + | chr4_1:40296123-40296142 | Msa0547340:CDS | 50.0% | |
| CATTCGGCATCTCCATCAGA+AGG | - | chr4_1:40296272-40296291 | None:intergenic | 50.0% | |
| CTTCTGATGGAGATGCCGAA+TGG | + | chr4_1:40296270-40296289 | Msa0547340:CDS | 50.0% | |
| GATGCCGAATGGAAGTCAAG+TGG | + | chr4_1:40296281-40296300 | Msa0547340:CDS | 50.0% | |
| ATAGCAACGCCTCTCTTGAC+AGG | - | chr4_1:40296551-40296570 | None:intergenic | 50.0% | |
| !! | TTGCTATGCCGATGATGGGA+GGG | + | chr4_1:40296564-40296583 | Msa0547340:CDS | 50.0% |
| TTGTCTTCCCCTCCCATCAT+CGG | - | chr4_1:40296575-40296594 | None:intergenic | 50.0% | |
| GCTGTCATTGCTCAAGGCCA+AGG | + | chr4_1:40295127-40295146 | Msa0547340:CDS | 55.0% | |
| TCCTGTCCCGATTGAAGAGC+TGG | - | chr4_1:40295346-40295365 | None:intergenic | 55.0% | |
| CTTCAATCGGGACAGGAACG+AGG | + | chr4_1:40295349-40295368 | Msa0547340:CDS | 55.0% | |
| !! | CCTCGCTTTGTTGGTGGTGA+CGG | + | chr4_1:40295999-40296018 | Msa0547340:CDS | 55.0% |
| CTTCATCGGTACTCGACCTC+AGG | + | chr4_1:40296100-40296119 | Msa0547340:CDS | 55.0% | |
| TAATCGCGAGTCCTTCCCTG+AGG | - | chr4_1:40296119-40296138 | None:intergenic | 55.0% | |
| ! | AGGCGTTGCTATGCCGATGA+TGG | + | chr4_1:40296559-40296578 | Msa0547340:CDS | 55.0% |
| GGCGTTGCTATGCCGATGAT+GGG | + | chr4_1:40296560-40296579 | Msa0547340:CDS | 55.0% | |
| !! | GTTGCTATGCCGATGATGGG+AGG | + | chr4_1:40296563-40296582 | Msa0547340:CDS | 55.0% |
| !! | TGCTATGCCGATGATGGGAG+GGG | + | chr4_1:40296565-40296584 | Msa0547340:CDS | 55.0% |
| GCAAACTCTGCAGGTTCCAG+AGG | + | chr4_1:40296627-40296646 | Msa0547340:CDS | 55.0% | |
| GCTGTCATTGCTCAAGGCCA+AGG | + | chr4_1:40295127-40295146 | Msa0547340:CDS | 55.0% | |
| TCCTGTCCCGATTGAAGAGC+TGG | - | chr4_1:40295346-40295365 | None:intergenic | 55.0% | |
| CTTCAATCGGGACAGGAACG+AGG | + | chr4_1:40295349-40295368 | Msa0547340:CDS | 55.0% | |
| !! | CCTCGCTTTGTTGGTGGTGA+CGG | + | chr4_1:40295999-40296018 | Msa0547340:CDS | 55.0% |
| CTTCATCGGTACTCGACCTC+AGG | + | chr4_1:40296100-40296119 | Msa0547340:CDS | 55.0% | |
| TAATCGCGAGTCCTTCCCTG+AGG | - | chr4_1:40296119-40296138 | None:intergenic | 55.0% | |
| ! | AGGCGTTGCTATGCCGATGA+TGG | + | chr4_1:40296559-40296578 | Msa0547340:CDS | 55.0% |
| GGCGTTGCTATGCCGATGAT+GGG | + | chr4_1:40296560-40296579 | Msa0547340:CDS | 55.0% | |
| !! | GTTGCTATGCCGATGATGGG+AGG | + | chr4_1:40296563-40296582 | Msa0547340:CDS | 55.0% |
| !! | TGCTATGCCGATGATGGGAG+GGG | + | chr4_1:40296565-40296584 | Msa0547340:CDS | 55.0% |
| GCAAACTCTGCAGGTTCCAG+AGG | + | chr4_1:40296627-40296646 | Msa0547340:CDS | 55.0% | |
| GCCAGCTCTTCAATCGGGAC+AGG | + | chr4_1:40295342-40295361 | Msa0547340:CDS | 60.0% | |
| CCGTCACCACCAACAAAGCG+AGG | - | chr4_1:40296002-40296021 | None:intergenic | 60.0% | |
| TCGGTACTCGACCTCAGGGA+AGG | + | chr4_1:40296105-40296124 | Msa0547340:CDS | 60.0% | |
| CTTGGCTAGTGGAAGGCCTC+TGG | - | chr4_1:40296646-40296665 | None:intergenic | 60.0% | |
| CAGAGGCCTTCCACTAGCCA+AGG | + | chr4_1:40296644-40296663 | Msa0547340:CDS | 60.0% | |
| GCCAGCTCTTCAATCGGGAC+AGG | + | chr4_1:40295342-40295361 | Msa0547340:CDS | 60.0% | |
| CCGTCACCACCAACAAAGCG+AGG | - | chr4_1:40296002-40296021 | None:intergenic | 60.0% | |
| TCGGTACTCGACCTCAGGGA+AGG | + | chr4_1:40296105-40296124 | Msa0547340:CDS | 60.0% | |
| CTTGGCTAGTGGAAGGCCTC+TGG | - | chr4_1:40296646-40296665 | None:intergenic | 60.0% | |
| CAGAGGCCTTCCACTAGCCA+AGG | + | chr4_1:40296644-40296663 | Msa0547340:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 40295067 | 40296685 | 40295067 | ID=Msa0547340;Name=Msa0547340 |
| chr4_1 | mRNA | 40295067 | 40296685 | 40295067 | ID=Msa0547340-mRNA-1;Parent=Msa0547340;Name=Msa0547340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0|1|1|1|2|0|390 |
| chr4_1 | exon | 40295067 | 40295508 | 40295067 | ID=Msa0547340-mRNA-1:exon:10300;Parent=Msa0547340-mRNA-1 |
| chr4_1 | exon | 40295955 | 40296685 | 40295955 | ID=Msa0547340-mRNA-1:exon:10301;Parent=Msa0547340-mRNA-1 |
| chr4_1 | CDS | 40295067 | 40295508 | 40295067 | ID=Msa0547340-mRNA-1:cds;Parent=Msa0547340-mRNA-1 |
| chr4_1 | CDS | 40295955 | 40296685 | 40295955 | ID=Msa0547340-mRNA-1:cds;Parent=Msa0547340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
