Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643510 | XP_003606453.1 | 96.603 | 677 | 20 | 1 | 2 | 675 | 3 | 679 | 0.0 | 1333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643510 | sp|Q6GPP7|TM209_XENLA | 22.273 | 220 | 129 | 5 | 465 | 669 | 366 | 558 | 8.58e-11 | 68.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643510 | G7JQG0 | 96.603 | 677 | 20 | 1 | 2 | 675 | 3 | 679 | 0.0 | 1333 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0643510 | Msa0682980 | 0.894199 | 3.085686e-75 | -8.615850e-47 |
| Msa0643510 | Msa0683050 | 0.905843 | 2.795673e-80 | -8.615850e-47 |
| Msa0602200 | Msa0643510 | 0.904679 | 9.535367e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643510 | MtrunA17_Chr4g0029691 | 96.603 | 677 | 20 | 1 | 2 | 675 | 3 | 679 | 0.0 | 1333 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643510 | AT1G07970.1 | 55.942 | 690 | 274 | 13 | 4 | 675 | 16 | 693 | 0.0 | 746 |
Find 199 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCTTCAGTTCCTGGTTT+TGG | 0.161390 | 4_3:-46545794 | Msa0643510:CDS |
| AAGTTATCATGTAATGTTTC+TGG | 0.165870 | 4_3:-46543201 | Msa0643510:three_prime_UTR |
| GCCGATCCTGTAACTGTATT+AGG | 0.190566 | 4_3:+46545761 | None:intergenic |
| CGGAGGAGAGATTAGGGTTT+TGG | 0.204681 | 4_3:+46547514 | None:intergenic |
| TCACCACCTTCTCCCTTCTT+AGG | 0.211557 | 4_3:+46545659 | None:intergenic |
| TATTGTTGTTGTAGGGAAAA+TGG | 0.214082 | 4_3:-46547310 | Msa0643510:intron |
| CAATGTCCGGCGTGATAATC+TGG | 0.225087 | 4_3:-46543169 | Msa0643510:three_prime_UTR |
| AGACTTCAGTCCTTAGTTAA+AGG | 0.240452 | 4_3:-46544261 | Msa0643510:CDS |
| TGAGAACGGAGGAGAGATTA+GGG | 0.260642 | 4_3:+46547508 | None:intergenic |
| ACTCCACCACCTTCAGTTCC+TGG | 0.289622 | 4_3:-46545800 | Msa0643510:CDS |
| AGGAAGGACTCCCAAGAATA+AGG | 0.295101 | 4_3:+46543843 | None:intergenic |
| GAGGGAGATGAGAGCGTGAT+TGG | 0.297125 | 4_3:+46547464 | None:intergenic |
| CATACATTTGGAAGCCTCTA+TGG | 0.297607 | 4_3:+46544500 | None:intergenic |
| TGTGGGGACTGTTGCATATT+AGG | 0.300222 | 4_3:+46544342 | None:intergenic |
| TTTAAGCATTCTACCTGTTA+TGG | 0.304026 | 4_3:-46543405 | Msa0643510:CDS |
| CACCACCTTCTCCCTTCTTA+GGG | 0.313156 | 4_3:+46545660 | None:intergenic |
| TTTCAAGTCCTTGGTCTAAT+AGG | 0.318049 | 4_3:-46545922 | Msa0643510:CDS |
| TGTAATTGATATACCAAGTT+TGG | 0.323780 | 4_3:+46544665 | None:intergenic |
| TTCTCTGGAAACCTATCCTT+TGG | 0.330000 | 4_3:+46543820 | None:intergenic |
| GTAAACGGAGAATTTGGATT+TGG | 0.333710 | 4_3:+46547536 | None:intergenic |
| GCATCCACTTTGGATGTTCT+AGG | 0.342075 | 4_3:+46543914 | None:intergenic |
| GTGAGAACGGAGGAGAGATT+AGG | 0.353664 | 4_3:+46547507 | None:intergenic |
| GACTTCAGTCCTTAGTTAAA+GGG | 0.360236 | 4_3:-46544260 | Msa0643510:CDS |
| TCAGGGAAGAACAGCACTTT+GGG | 0.360957 | 4_3:-46543507 | Msa0643510:intron |
| GCGAGCCCTAATACAGTTAC+AGG | 0.361786 | 4_3:-46545767 | Msa0643510:CDS |
| AATTTGAATAGGAGTGCTTC+TGG | 0.363589 | 4_3:-46546049 | Msa0643510:CDS |
| TAACTAAGGACTGAAGTCTT+TGG | 0.365536 | 4_3:+46544265 | None:intergenic |
| TCAGATTCTGTCTCCATAAC+AGG | 0.368488 | 4_3:+46543392 | None:intergenic |
| GTCCCCACAGCAGGGTCCTT+TGG | 0.372286 | 4_3:-46544328 | Msa0643510:CDS |
| CCTTTCTCGCCATTATCTTC+AGG | 0.376921 | 4_3:-46547413 | Msa0643510:intron |
| GACCCACTCCCCTTTAACTA+AGG | 0.377004 | 4_3:+46544251 | None:intergenic |
| GAAGCTGCAACTTTCTCTTC+AGG | 0.378961 | 4_3:-46543692 | Msa0643510:intron |
| GAGAATTTGGATTTGGATTG+TGG | 0.382023 | 4_3:+46547543 | None:intergenic |
| CCGATCCTGTAACTGTATTA+GGG | 0.387249 | 4_3:+46545762 | None:intergenic |
| GATTGAGACAAGTCATGTTC+AGG | 0.391265 | 4_3:-46545501 | Msa0643510:intron |
| AGTGCTTCTGGTCGTTCTAT+TGG | 0.391650 | 4_3:-46546037 | Msa0643510:CDS |
| AGTGAAGCCGAAGGTTGATT+TGG | 0.392715 | 4_3:-46546194 | Msa0643510:CDS |
| CTGTGTCATAAGATTAAAGT+TGG | 0.400152 | 4_3:-46543470 | Msa0643510:CDS |
| AGTCCTAGTCGTCGTGTTGA+TGG | 0.401203 | 4_3:-46546082 | Msa0643510:CDS |
| GGAAGGACTCCCAAGAATAA+GGG | 0.409561 | 4_3:+46543844 | None:intergenic |
| GTGATGGTTCGAATTTGAAT+AGG | 0.413755 | 4_3:-46546060 | Msa0643510:CDS |
| TTGAAGAATTATGAGTATCT+TGG | 0.415652 | 4_3:-46544027 | Msa0643510:CDS |
| GAAAGCGGAAGCAGAGAAGA+AGG | 0.431888 | 4_3:+46547437 | None:intergenic |
| GTCCCTTCTGTGCTGCATCC+AGG | 0.432320 | 4_3:-46543775 | Msa0643510:CDS |
| TCACGCCACTGCTCAATTTG+AGG | 0.434711 | 4_3:+46545575 | None:intergenic |
| GCAGTTACCCTTAGTGAAGA+TGG | 0.437512 | 4_3:-46544558 | Msa0643510:CDS |
| ATTGTTGTTGTAGGGAAAAT+GGG | 0.438037 | 4_3:-46547309 | Msa0643510:intron |
| AACTTTACAAGCTGTATAAG+AGG | 0.441528 | 4_3:+46547255 | None:intergenic |
| CTGGAGGCCGTCACAATGTC+CGG | 0.442981 | 4_3:-46543182 | Msa0643510:three_prime_UTR |
| AAGTGGTTACCTGAAGATAA+TGG | 0.448628 | 4_3:+46547404 | None:intergenic |
| TCCTTTGGTTCCTCTCATGC+AGG | 0.452367 | 4_3:-46544313 | Msa0643510:CDS |
| AAGCCATGGTTTCGCTCGCT+AGG | 0.458359 | 4_3:+46547577 | None:intergenic |
| TTCAGGGAAGAACAGCACTT+TGG | 0.460830 | 4_3:-46543508 | Msa0643510:intron |
| ACCGAAGTCTAAACCGCAGC+CGG | 0.462626 | 4_3:-46546146 | Msa0643510:CDS |
| AGCTTCAACCGCTTCTTCCA+TGG | 0.463538 | 4_3:+46545619 | None:intergenic |
| AATCGGTAGTTTCAAGTCCT+TGG | 0.469923 | 4_3:-46545931 | Msa0643510:CDS |
| TTGGGTATGGAGGTATCGTT+AGG | 0.470120 | 4_3:-46543451 | Msa0643510:CDS |
| ATCAATGGATGAACTTGTAG+AGG | 0.470366 | 4_3:+46544602 | None:intergenic |
| CCTGAAGATAATGGCGAGAA+AGG | 0.473170 | 4_3:+46547413 | None:intergenic |
| GAAGGTTGATTTGGTACAAC+CGG | 0.473791 | 4_3:-46546185 | Msa0643510:CDS |
| CAGCTTCTTATCCCAGTACA+AGG | 0.477772 | 4_3:+46543708 | None:intergenic |
| CATAAGATTAAAGTTGGGTA+TGG | 0.478199 | 4_3:-46543464 | Msa0643510:CDS |
| TACTCTTGTGCAGGCCATAG+AGG | 0.478232 | 4_3:-46544514 | Msa0643510:CDS |
| ATCAATTACAGTCAATCAAG+TGG | 0.480334 | 4_3:-46544652 | Msa0643510:CDS |
| ATGAACACAGCTGCCAAACT+TGG | 0.480956 | 4_3:-46544678 | Msa0643510:CDS |
| GGTTGTACCAAATCAACCTT+CGG | 0.483656 | 4_3:+46546187 | None:intergenic |
| TGCACAGAGTACAGCAGGAC+TGG | 0.488505 | 4_3:-46545954 | Msa0643510:CDS |
| TATACTAGTAGTTGGAAAGC+AGG | 0.489183 | 4_3:-46543746 | Msa0643510:CDS |
| GACATCCTCACAGGCCTCAA+TGG | 0.490228 | 4_3:+46545710 | None:intergenic |
| GTCTCAATCTTGTGAAGCAA+AGG | 0.494453 | 4_3:+46545515 | None:intergenic |
| AGTCCTGCTGTACTCTGTGC+AGG | 0.494921 | 4_3:+46545956 | None:intergenic |
| GAAAGAATAAGTGAATCTGC+AGG | 0.497798 | 4_3:-46545833 | Msa0643510:CDS |
| CCCGGCTGCGGTTTAGACTT+CGG | 0.501904 | 4_3:+46546145 | None:intergenic |
| GGCAACTTGTCGAGGTCACC+TGG | 0.501991 | 4_3:-46546016 | Msa0643510:CDS |
| TCTGGAAACCTATCCTTTGG+AGG | 0.502203 | 4_3:+46543823 | None:intergenic |
| TGTGTAGCGCATATATCATA+TGG | 0.502755 | 4_3:-46547648 | Msa0643510:five_prime_UTR |
| TATGCAACAGTCCCCACAGC+AGG | 0.503169 | 4_3:-46544337 | Msa0643510:CDS |
| GAAGCAATCCATCTTCACTA+AGG | 0.505272 | 4_3:+46544550 | None:intergenic |
| TCAGCTCGAACACTGCTTTG+AGG | 0.506201 | 4_3:+46544216 | None:intergenic |
| CAAGTCCTTGGTCTAATAGG+AGG | 0.509692 | 4_3:-46545919 | Msa0643510:CDS |
| CTTGAAATCGGCTGATGTAG+TGG | 0.510506 | 4_3:+46546103 | None:intergenic |
| CCAGTCTTGAGTCTTATCAA+TGG | 0.510525 | 4_3:+46544587 | None:intergenic |
| ACTACGGAGATGTATTTCTC+TGG | 0.512249 | 4_3:+46543805 | None:intergenic |
| GATAACATCAGAGGAAGAGC+TGG | 0.515013 | 4_3:-46545879 | Msa0643510:CDS |
| GCTCCTGGATGCAGCACAGA+AGG | 0.515565 | 4_3:+46543772 | None:intergenic |
| AGTCCTTAGTTAAAGGGGAG+TGG | 0.516301 | 4_3:-46544254 | Msa0643510:CDS |
| ATTATGAGTATCTTGGTAGC+GGG | 0.516620 | 4_3:-46544020 | Msa0643510:CDS |
| GGAGCATGTATACTAGTAGT+TGG | 0.518646 | 4_3:-46543754 | Msa0643510:CDS |
| GAGTACAGCAGGACTGGAAT+CGG | 0.520516 | 4_3:-46545948 | Msa0643510:CDS |
| CTTGGGAGTCCTTCCTCCAA+AGG | 0.521528 | 4_3:-46543836 | Msa0643510:CDS |
| TCCACATGTAGCATCCACTT+TGG | 0.523122 | 4_3:+46543904 | None:intergenic |
| TTGTTGGGTATCGTCTGCAT+TGG | 0.523329 | 4_3:-46546361 | Msa0643510:CDS |
| TGGAGGTGTTGTTACTCCTA+TGG | 0.525807 | 4_3:-46546287 | Msa0643510:CDS |
| CGACGACTAGGACTTGAAAT+CGG | 0.526183 | 4_3:+46546091 | None:intergenic |
| ACAGGATCGGCTAGTAACTC+TGG | 0.526790 | 4_3:-46545749 | Msa0643510:CDS |
| AGCAGAGAAGAAGGAGAAGA+GGG | 0.527210 | 4_3:+46547446 | None:intergenic |
| AAGCAGAGAAGAAGGAGAAG+AGG | 0.528309 | 4_3:+46547445 | None:intergenic |
| AGCCATGGTTTCGCTCGCTA+GGG | 0.528942 | 4_3:+46547578 | None:intergenic |
| GTTAAAGGGGAGTGGGTCAA+AGG | 0.528973 | 4_3:-46544246 | Msa0643510:CDS |
| GGCAATGATACACTGTCTAC+AGG | 0.530242 | 4_3:-46544630 | Msa0643510:CDS |
| GGTGGCTTCTTCAACGACTC+CGG | 0.530803 | 4_3:+46546166 | None:intergenic |
| ATACAAGAGCAAGTGAGAAT+CGG | 0.531779 | 4_3:+46543951 | None:intergenic |
| GAGTCCTTCCTCCAAAGGAT+AGG | 0.531914 | 4_3:-46543831 | Msa0643510:CDS |
| AGGCCTGTGAGGATGTCTCC+AGG | 0.532208 | 4_3:-46545704 | Msa0643510:CDS |
| CAAATTGAGCAGTGGCGTGA+TGG | 0.532927 | 4_3:-46545572 | Msa0643510:CDS |
| AAGATTAAAGTTGGGTATGG+AGG | 0.534394 | 4_3:-46543461 | Msa0643510:CDS |
| GCTGCATTCTACTCTTGTGC+AGG | 0.537134 | 4_3:-46544523 | Msa0643510:CDS |
| TGTGTCATAAGATTAAAGTT+GGG | 0.538533 | 4_3:-46543469 | Msa0643510:CDS |
| CCTTCCTCCACCTATGTCCA+TGG | 0.539185 | 4_3:-46545636 | Msa0643510:CDS |
| CTTATGACACAGAATCAAGA+TGG | 0.542280 | 4_3:+46543481 | None:intergenic |
| GTCCTTAGTTAAAGGGGAGT+GGG | 0.545653 | 4_3:-46544253 | Msa0643510:CDS |
| ATACTCATAATTCTTCAAGC+AGG | 0.545765 | 4_3:+46544032 | None:intergenic |
| ATTGGATGGTTGAAGACTGT+TGG | 0.548223 | 4_3:+46547482 | None:intergenic |
| ACTACTAGTATACATGCTCC+TGG | 0.550196 | 4_3:+46543757 | None:intergenic |
| TTACATGATAACTTCAACTG+AGG | 0.553507 | 4_3:+46543210 | None:intergenic |
| TCACCTGCACAGAGTACAGC+AGG | 0.555844 | 4_3:-46545959 | Msa0643510:CDS |
| TGTGCAGGTGATACTACTCC+GGG | 0.556207 | 4_3:+46545971 | None:intergenic |
| ACCACCTTCTCCCTTCTTAG+GGG | 0.557390 | 4_3:+46545661 | None:intergenic |
| AATGTCCGGCGTGATAATCT+GGG | 0.561914 | 4_3:-46543168 | Msa0643510:three_prime_UTR |
| TCAATGGATGAACTTGTAGA+GGG | 0.564545 | 4_3:+46544603 | None:intergenic |
| CCACCTTCTCCCTTCTTAGG+GGG | 0.564768 | 4_3:+46545662 | None:intergenic |
| CATATTAGGTACAAACGAGT+TGG | 0.565530 | 4_3:+46544356 | None:intergenic |
| CCGAAGTCTAAACCGCAGCC+GGG | 0.565733 | 4_3:-46546145 | Msa0643510:CDS |
| TAGATTTCGAAACATAATGC+TGG | 0.566365 | 4_3:-46543040 | Msa0643510:three_prime_UTR |
| GGATGGTTGAAGACTGTTGG+AGG | 0.566660 | 4_3:+46547485 | None:intergenic |
| GTGGATGCAACGTCTTATGC+TGG | 0.567802 | 4_3:-46543886 | Msa0643510:CDS |
| ACTTCAGTCCTTAGTTAAAG+GGG | 0.568978 | 4_3:-46544259 | Msa0643510:CDS |
| ACCTATGTCCATGGAAGAAG+CGG | 0.569193 | 4_3:-46545627 | Msa0643510:CDS |
| AAGACTGTTGGAGGTGAGAA+CGG | 0.569824 | 4_3:+46547494 | None:intergenic |
| ACCGCTTCTTCCATGGACAT+AGG | 0.570460 | 4_3:+46545626 | None:intergenic |
| AATTCAGAAGAACCCGGCTG+CGG | 0.572345 | 4_3:+46546133 | None:intergenic |
| TCACCATCAACACGACGACT+AGG | 0.572718 | 4_3:+46546079 | None:intergenic |
| AATTATGAGTATCTTGGTAG+CGG | 0.575034 | 4_3:-46544021 | Msa0643510:CDS |
| CTGTGCAGGTGATACTACTC+CGG | 0.575494 | 4_3:+46545970 | None:intergenic |
| AGTCGTCGTGTTGATGGTGA+TGG | 0.576247 | 4_3:-46546076 | Msa0643510:CDS |
| CGTCTGCATTGGAACTATGT+TGG | 0.577444 | 4_3:-46546350 | Msa0643510:CDS |
| AACCCTAGCGAGCGAAACCA+TGG | 0.578481 | 4_3:-46547580 | Msa0643510:exon |
| GGAACCAAAGGACCCTGCTG+TGG | 0.581478 | 4_3:+46544324 | None:intergenic |
| AAACCAGGAACTGAAGGTGG+TGG | 0.581500 | 4_3:+46545797 | None:intergenic |
| CCCTAATACAGTTACAGGAT+CGG | 0.581559 | 4_3:-46545762 | Msa0643510:CDS |
| TGGGTATGGAGGTATCGTTA+GGG | 0.581693 | 4_3:-46543450 | Msa0643510:CDS |
| TCATGTCGAATGTTAGCGGA+AGG | 0.582981 | 4_3:+46543336 | None:intergenic |
| GAAACCTATCCTTTGGAGGA+AGG | 0.584282 | 4_3:+46543827 | None:intergenic |
| AATCCAAAACCAGGAACTGA+AGG | 0.584595 | 4_3:+46545791 | None:intergenic |
| GTTCTATTGGCAACTTGTCG+AGG | 0.588006 | 4_3:-46546024 | Msa0643510:CDS |
| TCGACACAGTCCTGCATGAG+AGG | 0.588828 | 4_3:+46544303 | None:intergenic |
| GAGATGAGAGCGTGATTGGA+TGG | 0.588995 | 4_3:+46547468 | None:intergenic |
| TTTGAGGATAGACACCCAAA+TGG | 0.589541 | 4_3:+46545591 | None:intergenic |
| GCCGTCATGTCGAATGTTAG+CGG | 0.590582 | 4_3:+46543332 | None:intergenic |
| TTAGAATTCGACACAACCAT+AGG | 0.590943 | 4_3:+46546271 | None:intergenic |
| TTACGTAAAACTAGATATGG+TGG | 0.593722 | 4_3:-46546307 | Msa0643510:CDS |
| AAGTCCTTGGTCTAATAGGA+GGG | 0.595120 | 4_3:-46545918 | Msa0643510:CDS |
| GAACCAAAGGACCCTGCTGT+GGG | 0.596020 | 4_3:+46544325 | None:intergenic |
| AATGGCGAGAAAGGCGAAAG+CGG | 0.596342 | 4_3:+46547422 | None:intergenic |
| GGCGTGATGGACTCAGACAA+TGG | 0.596919 | 4_3:-46545559 | Msa0643510:CDS |
| AAGCAATCCATCTTCACTAA+GGG | 0.597444 | 4_3:+46544551 | None:intergenic |
| ATCGTTAGGGGTATGCATCT+AGG | 0.598489 | 4_3:-46543437 | Msa0643510:CDS |
| TCTTCCATGGACATAGGTGG+AGG | 0.601401 | 4_3:+46545632 | None:intergenic |
| TGGAGGTGAAGAAGAAGCCA+TGG | 0.603690 | 4_3:+46547563 | None:intergenic |
| TCTTCACTAAGGGTAACTGC+TGG | 0.607381 | 4_3:+46544561 | None:intergenic |
| CTCCTGGATGCAGCACAGAA+GGG | 0.610089 | 4_3:+46543773 | None:intergenic |
| GAGCCTGGAGACATCCTCAC+AGG | 0.610961 | 4_3:+46545701 | None:intergenic |
| CCATGGACATAGGTGGAGGA+AGG | 0.613851 | 4_3:+46545636 | None:intergenic |
| CTTTCCTAGAACATCCAAAG+TGG | 0.615098 | 4_3:-46543918 | Msa0643510:CDS |
| TGCTAATAAGATAACATCAG+AGG | 0.616471 | 4_3:-46545888 | Msa0643510:CDS |
| AGAAGGGACTGAAGACACTA+CGG | 0.616789 | 4_3:+46543789 | None:intergenic |
| TCCTGCATGAGAGGAACCAA+AGG | 0.618525 | 4_3:+46544312 | None:intergenic |
| AATGGATGAACTTGTAGAGG+GGG | 0.620948 | 4_3:+46544605 | None:intergenic |
| GAAGGACTCCCAAGAATAAG+GGG | 0.621294 | 4_3:+46543845 | None:intergenic |
| CCAAAACCAGGAACTGAAGG+TGG | 0.627093 | 4_3:+46545794 | None:intergenic |
| ATGCAACAGTCCCCACAGCA+GGG | 0.630389 | 4_3:-46544336 | Msa0643510:CDS |
| CGTAAAACTAGATATGGTGG+AGG | 0.630602 | 4_3:-46546304 | Msa0643510:CDS |
| GCTTCTTCCATGGACATAGG+TGG | 0.632379 | 4_3:+46545629 | None:intergenic |
| ATACTAGTAGTTGGAAAGCA+GGG | 0.632922 | 4_3:-46543745 | Msa0643510:CDS |
| TCAATTACAGTCAATCAAGT+GGG | 0.636455 | 4_3:-46544651 | Msa0643510:CDS |
| AAAGAATAAGTGAATCTGCA+GGG | 0.638876 | 4_3:-46545832 | Msa0643510:CDS |
| CCATTGATAAGACTCAAGAC+TGG | 0.640774 | 4_3:-46544587 | Msa0643510:CDS |
| TTATCATGTAATGTTTCTGG+AGG | 0.641191 | 4_3:-46543198 | Msa0643510:three_prime_UTR |
| ACTGTAGTGATGTGTAAATG+TGG | 0.641783 | 4_3:+46547680 | None:intergenic |
| GGGCTCGCTAATCCAAAACC+AGG | 0.642580 | 4_3:+46545782 | None:intergenic |
| ACAAGCAATTCAGAAGAACC+CGG | 0.644327 | 4_3:+46546127 | None:intergenic |
| TCCGCTAACATTCGACATGA+CGG | 0.647162 | 4_3:-46543333 | Msa0643510:three_prime_UTR |
| TACACTGTGCAAAGAATCCG+AGG | 0.647375 | 4_3:-46544192 | Msa0643510:intron |
| GGCTGCGGTTTAGACTTCGG+TGG | 0.653097 | 4_3:+46546148 | None:intergenic |
| AAGAGCAAGTGAGAATCGGA+TGG | 0.656585 | 4_3:+46543955 | None:intergenic |
| CATGTCGAATGTTAGCGGAA+GGG | 0.666207 | 4_3:+46543337 | None:intergenic |
| CAATGGATGAACTTGTAGAG+GGG | 0.667361 | 4_3:+46544604 | None:intergenic |
| TTAAAAGACATACACCATTG+AGG | 0.667685 | 4_3:-46545724 | Msa0643510:CDS |
| AATTTGGATTTGGATTGTGG+AGG | 0.671538 | 4_3:+46547546 | None:intergenic |
| TCTATCCTCAAATTGAGCAG+TGG | 0.673697 | 4_3:-46545580 | Msa0643510:CDS |
| TTATGAGTATCTTGGTAGCG+GGG | 0.675109 | 4_3:-46544019 | Msa0643510:CDS |
| TCCAAAGTGGATGCTACATG+TGG | 0.676915 | 4_3:-46543905 | Msa0643510:CDS |
| GGGTATGGAGGTATCGTTAG+GGG | 0.678040 | 4_3:-46543449 | Msa0643510:CDS |
| AACCAAAGGACCCTGCTGTG+GGG | 0.678871 | 4_3:+46544326 | None:intergenic |
| TATCACGCCGGACATTGTGA+CGG | 0.680734 | 4_3:+46543175 | None:intergenic |
| GATGCCCTCCTATTAGACCA+AGG | 0.691355 | 4_3:+46545914 | None:intergenic |
| ATACACCATTGAGGCCTGTG+AGG | 0.694783 | 4_3:-46545715 | Msa0643510:CDS |
| AAGAACCCAGATTATCACGC+CGG | 0.699015 | 4_3:+46543163 | None:intergenic |
| ACTGTTGGAGGTGAGAACGG+AGG | 0.727409 | 4_3:+46547497 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAAAAATGATTTTTTTC+GGG | - | chr4_3:46544142-46544161 | Msa0643510:intron | 10.0% |
| !! | AAATAATGAAATTGAATGAA+TGG | + | chr4_3:46543369-46543388 | None:intergenic | 15.0% |
| !! | ATTGTGACAATAATTTAATA+AGG | - | chr4_3:46543835-46543854 | Msa0643510:CDS | 15.0% |
| !! | TTGTGACAATAATTTAATAA+GGG | - | chr4_3:46543836-46543855 | Msa0643510:CDS | 15.0% |
| !!! | AATACGAAAATTTTATTAGT+TGG | + | chr4_3:46546011-46546030 | None:intergenic | 15.0% |
| !!! | AATAAAATTTTCGTATTCAT+AGG | - | chr4_3:46546014-46546033 | Msa0643510:CDS | 15.0% |
| !! | AAATTATAAGTACATAGAAT+AGG | + | chr4_3:46547153-46547172 | None:intergenic | 15.0% |
| !! | GTACTTATAATTTATTATCT+TGG | - | chr4_3:46547160-46547179 | Msa0643510:intron | 15.0% |
| !!! | TTGTTTTTTTAGTACAAATT+AGG | + | chr4_3:46547616-46547635 | None:intergenic | 15.0% |
| !!! | ACTTTAACTTGTTTTTGTTT+TGG | - | chr4_3:46543489-46543508 | Msa0643510:CDS | 20.0% |
| !!! | CTTTAACTTGTTTTTGTTTT+GGG | - | chr4_3:46543490-46543509 | Msa0643510:CDS | 20.0% |
| !!! | TTATAATTGATTTTGCATCT+AGG | - | chr4_3:46543586-46543605 | Msa0643510:intron | 20.0% |
| !! | ATTCTACTTAAGTTAGAAAT+TGG | - | chr4_3:46543613-46543632 | Msa0643510:intron | 20.0% |
| !! | TGTTACACATTTAACAAAAA+AGG | + | chr4_3:46544226-46544245 | None:intergenic | 20.0% |
| !!! | TTTTTACGTAAAACTAGATA+TGG | - | chr4_3:46544407-46544426 | Msa0643510:intron | 20.0% |
| !!! | TGTGTTTGAAGAATTATTTT+TGG | - | chr4_3:46545511-46545530 | Msa0643510:CDS | 20.0% |
| !!! | ATATTTCATACTCTTCTTTT+TGG | + | chr4_3:46545655-46545674 | None:intergenic | 20.0% |
| !! | TTATGAATCTATGATATGAT+TGG | - | chr4_3:46545697-46545716 | Msa0643510:CDS | 20.0% |
| !! | AATATGAATCAACATACATT+TGG | + | chr4_3:46546232-46546251 | None:intergenic | 20.0% |
| !! | ATTCATATTCATATGCATAT+TGG | - | chr4_3:46546243-46546262 | Msa0643510:CDS | 20.0% |
| !! | ATGATAAAAAGAATAAGAAG+TGG | - | chr4_3:46546727-46546746 | Msa0643510:intron | 20.0% |
| !! | ACAATATTGAAAGGTTTAAT+AGG | + | chr4_3:46547118-46547137 | None:intergenic | 20.0% |
| !!! | TGGTTTAAAACAATATTGAA+AGG | + | chr4_3:46547127-46547146 | None:intergenic | 20.0% |
| !! | TTTCATGTATTGTTGTTGTA+GGG | - | chr4_3:46543400-46543419 | Msa0643510:CDS | 25.0% |
| !!! | TGAATTGATTTTGACATGTT+TGG | - | chr4_3:46543553-46543572 | Msa0643510:intron | 25.0% |
| !! | ATGATTTTGTAGATTGATAG+TGG | + | chr4_3:46543768-46543787 | None:intergenic | 25.0% |
| ! | TCAACTAGAATCAATTATGT+AGG | - | chr4_3:46543983-46544002 | Msa0643510:CDS | 25.0% |
| !!! | AAGCTGCTTTTATTTTTTCT+GGG | - | chr4_3:46544196-46544215 | Msa0643510:CDS | 25.0% |
| ! | TACACATTTAACAAAAAAGG+AGG | + | chr4_3:46544223-46544242 | None:intergenic | 25.0% |
| ! | TGATTTATTGAACTTCAGAT+TGG | - | chr4_3:46544312-46544331 | Msa0643510:CDS | 25.0% |
| ! | GATTTATTGAACTTCAGATT+GGG | - | chr4_3:46544313-46544332 | Msa0643510:CDS | 25.0% |
| ! | CCATAAAACAAGAAATGATT+AGG | + | chr4_3:46545253-46545272 | None:intergenic | 25.0% |
| !!! | CCTAATCATTTCTTGTTTTA+TGG | - | chr4_3:46545250-46545269 | Msa0643510:intron | 25.0% |
| !!! | TGGTCAAAGTAATGTTTTTT+AGG | - | chr4_3:46545270-46545289 | Msa0643510:intron | 25.0% |
| !!! | GTAATGTTTTTTAGGATACA+TGG | - | chr4_3:46545278-46545297 | Msa0643510:intron | 25.0% |
| !! | TAGAGAATGAGTTTTACATT+TGG | - | chr4_3:46545548-46545567 | Msa0643510:CDS | 25.0% |
| ! | TTACTAGGAAAAATTACTCA+AGG | - | chr4_3:46545614-46545633 | Msa0643510:CDS | 25.0% |
| !!! | TTTACTGGTTTTCTTAGTTT+GGG | + | chr4_3:46545840-46545859 | None:intergenic | 25.0% |
| !!! | TTTTACTGGTTTTCTTAGTT+TGG | + | chr4_3:46545841-46545860 | None:intergenic | 25.0% |
| ! | AAGTTCTATGGTATTTATAG+AGG | - | chr4_3:46545937-46545956 | Msa0643510:CDS | 25.0% |
| ! | TGTATCTAACTTGAACTATA+TGG | + | chr4_3:46545964-46545983 | None:intergenic | 25.0% |
| ! | TGTAATTGATATACCAAGTT+TGG | + | chr4_3:46546055-46546074 | None:intergenic | 25.0% |
| ! | TCAGCAAATATAATCAAACT+GGG | + | chr4_3:46546293-46546312 | None:intergenic | 25.0% |
| ! | ATCAGCAAATATAATCAAAC+TGG | + | chr4_3:46546294-46546313 | None:intergenic | 25.0% |
| ! | TGATGAATCTAATGACTAAT+AGG | + | chr4_3:46546577-46546596 | None:intergenic | 25.0% |
| ! | TTGAAGAATTATGAGTATCT+TGG | - | chr4_3:46546690-46546709 | Msa0643510:intron | 25.0% |
| ! | TTGGTTCATATAGTAACATT+GGG | + | chr4_3:46547070-46547089 | None:intergenic | 25.0% |
| ! | TAAGTACATAGAATAGGTAT+TGG | + | chr4_3:46547147-46547166 | None:intergenic | 25.0% |
| ! | TGTGTCATAAGATTAAAGTT+GGG | - | chr4_3:46547248-46547267 | Msa0643510:intron | 25.0% |
| ! | AAGTTATCATGTAATGTTTC+TGG | - | chr4_3:46547516-46547535 | Msa0643510:CDS | 25.0% |
| ! | CTTTCATGTATTGTTGTTGT+AGG | - | chr4_3:46543399-46543418 | Msa0643510:CDS | 30.0% |
| ! | TATTGTTGTTGTAGGGAAAA+TGG | - | chr4_3:46543407-46543426 | Msa0643510:CDS | 30.0% |
| ! | ATTGTTGTTGTAGGGAAAAT+GGG | - | chr4_3:46543408-46543427 | Msa0643510:CDS | 30.0% |
| AACTTTACAAGCTGTATAAG+AGG | + | chr4_3:46543465-46543484 | None:intergenic | 30.0% | |
| ! | TCACAATAGAAGTGTATGTT+TGG | + | chr4_3:46543822-46543841 | None:intergenic | 30.0% |
| ! | AAGGTAAAGTGATTTGTGTT+AGG | - | chr4_3:46543899-46543918 | Msa0643510:CDS | 30.0% |
| TTGTGTGTATAAACCAATTC+TGG | - | chr4_3:46543938-46543957 | Msa0643510:CDS | 30.0% | |
| !! | GTATAAACCAATTCTGGAAT+CGG | - | chr4_3:46543944-46543963 | Msa0643510:CDS | 30.0% |
| ! | TTCTAGTTGAAGCTAGAATT+TGG | + | chr4_3:46543973-46543992 | None:intergenic | 30.0% |
| !! | AAAATTGATTCGGACATGTT+TGG | + | chr4_3:46544034-46544053 | None:intergenic | 30.0% |
| ! | AAACATGTCCGAATCAATTT+TGG | - | chr4_3:46544033-46544052 | Msa0643510:CDS | 30.0% |
| !!! | GAAGCTGCTTTTATTTTTTC+TGG | - | chr4_3:46544195-46544214 | Msa0643510:CDS | 30.0% |
| ! | AAGACACTGCAAATTTTGTT+GGG | - | chr4_3:46544341-46544360 | Msa0643510:CDS | 30.0% |
| TTACGTAAAACTAGATATGG+TGG | - | chr4_3:46544410-46544429 | Msa0643510:intron | 30.0% | |
| ! | AAACATCAGTTAGAGCTTTT+AGG | - | chr4_3:46544500-46544519 | Msa0643510:intron | 30.0% |
| TGCTAATAAGATAACATCAG+AGG | - | chr4_3:46544829-46544848 | Msa0643510:intron | 30.0% | |
| AAAGAATAAGTGAATCTGCA+GGG | - | chr4_3:46544885-46544904 | Msa0643510:intron | 30.0% | |
| TTAAAAGACATACACCATTG+AGG | - | chr4_3:46544993-46545012 | Msa0643510:intron | 30.0% | |
| ! | ACACACTGTCAATATTTTCT+TGG | + | chr4_3:46545388-46545407 | None:intergenic | 30.0% |
| GTTCAAATTGAATTACTGCT+TGG | - | chr4_3:46545409-46545428 | Msa0643510:intron | 30.0% | |
| ! | CTCGTTCTTGTAATACTTTT+TGG | + | chr4_3:46545584-46545603 | None:intergenic | 30.0% |
| TTACAAGAACGAGACTTATT+TGG | - | chr4_3:46545591-46545610 | Msa0643510:CDS | 30.0% | |
| AGGAAAAATTACTCAAGGTA+TGG | - | chr4_3:46545619-46545638 | Msa0643510:CDS | 30.0% | |
| ! | ATCTATGATATGATTGGTCA+TGG | - | chr4_3:46545703-46545722 | Msa0643510:CDS | 30.0% |
| ! | AACCAGTAAAAACCTCATTT+TGG | - | chr4_3:46545850-46545869 | Msa0643510:CDS | 30.0% |
| ! | AACCAAAATGAGGTTTTTAC+TGG | + | chr4_3:46545855-46545874 | None:intergenic | 30.0% |
| TAGAACTTCAACCGTAATAA+TGG | + | chr4_3:46545925-46545944 | None:intergenic | 30.0% | |
| TTATTACGGTTGAAGTTCTA+TGG | - | chr4_3:46545925-46545944 | Msa0643510:CDS | 30.0% | |
| ATCAATTACAGTCAATCAAG+TGG | - | chr4_3:46546065-46546084 | Msa0643510:CDS | 30.0% | |
| TCAATTACAGTCAATCAAGT+GGG | - | chr4_3:46546066-46546085 | Msa0643510:CDS | 30.0% | |
| !! | GGAGTTCATTTTTCTGATAT+TGG | - | chr4_3:46546611-46546630 | Msa0643510:intron | 30.0% |
| !!! | TCTGATATTGGTTTTAATGC+TGG | - | chr4_3:46546623-46546642 | Msa0643510:intron | 30.0% |
| !! | AAGCTCTGAAAATTTAGACA+AGG | + | chr4_3:46546655-46546674 | None:intergenic | 30.0% |
| ATACTCATAATTCTTCAAGC+AGG | + | chr4_3:46546688-46546707 | None:intergenic | 30.0% | |
| AATTATGAGTATCTTGGTAG+CGG | - | chr4_3:46546696-46546715 | Msa0643510:intron | 30.0% | |
| TGGTTCATATAGTAACATTG+GGG | + | chr4_3:46547069-46547088 | None:intergenic | 30.0% | |
| ! | GTTGGTTCATATAGTAACAT+TGG | + | chr4_3:46547071-46547090 | None:intergenic | 30.0% |
| GTTCATAGTAAATAGGTTGT+TGG | + | chr4_3:46547089-46547108 | None:intergenic | 30.0% | |
| TGAAAGGTTTAATAGGTTGT+CGG | + | chr4_3:46547111-46547130 | None:intergenic | 30.0% | |
| !!! | AGCTCTGAGATTTATTTTTC+AGG | - | chr4_3:46547192-46547211 | Msa0643510:intron | 30.0% |
| !!! | GCTCTGAGATTTATTTTTCA+GGG | - | chr4_3:46547193-46547212 | Msa0643510:intron | 30.0% |
| CTGTGTCATAAGATTAAAGT+TGG | - | chr4_3:46547247-46547266 | Msa0643510:intron | 30.0% | |
| CATAAGATTAAAGTTGGGTA+TGG | - | chr4_3:46547253-46547272 | Msa0643510:intron | 30.0% | |
| TTTAAGCATTCTACCTGTTA+TGG | - | chr4_3:46547312-46547331 | Msa0643510:intron | 30.0% | |
| TTACATGATAACTTCAACTG+AGG | + | chr4_3:46547510-46547529 | None:intergenic | 30.0% | |
| !! | TTATCATGTAATGTTTCTGG+AGG | - | chr4_3:46547519-46547538 | Msa0643510:CDS | 30.0% |
| TGTGTAGCGCATATATCATA+TGG | - | chr4_3:46543069-46543088 | Msa0643510:three_prime_UTR | 35.0% | |
| !!! | GGTTTTTGAAATGAGGTTTG+AGG | + | chr4_3:46543121-46543140 | None:intergenic | 35.0% |
| AATTTGGATTTGGATTGTGG+AGG | + | chr4_3:46543174-46543193 | None:intergenic | 35.0% | |
| GAGAATTTGGATTTGGATTG+TGG | + | chr4_3:46543177-46543196 | None:intergenic | 35.0% | |
| GTAAACGGAGAATTTGGATT+TGG | + | chr4_3:46543184-46543203 | None:intergenic | 35.0% | |
| !! | GTTTTGGTAAACGGAGAATT+TGG | + | chr4_3:46543190-46543209 | None:intergenic | 35.0% |
| !! | GAGATTAGGGTTTTGGTAAA+CGG | + | chr4_3:46543199-46543218 | None:intergenic | 35.0% |
| AAGTGGTTACCTGAAGATAA+TGG | + | chr4_3:46543316-46543335 | None:intergenic | 35.0% | |
| TGAGGAATGATGGTAAAAAG+TGG | + | chr4_3:46543333-46543352 | None:intergenic | 35.0% | |
| !!! | AACTTGTTTTTGTTTTGGGC+TGG | - | chr4_3:46543494-46543513 | Msa0643510:CDS | 35.0% |
| ! | TCTGACTTAAAGTGAGTTGA+AGG | - | chr4_3:46543880-46543899 | Msa0643510:CDS | 35.0% |
| TAGAGTGGCCAAAATTGATT+CGG | + | chr4_3:46544044-46544063 | None:intergenic | 35.0% | |
| ! | CAAGACACTGCAAATTTTGT+TGG | - | chr4_3:46544340-46544359 | Msa0643510:CDS | 35.0% |
| TTAGAATTCGACACAACCAT+AGG | + | chr4_3:46544449-46544468 | None:intergenic | 35.0% | |
| GTGATGGTTCGAATTTGAAT+AGG | - | chr4_3:46544657-46544676 | Msa0643510:CDS | 35.0% | |
| !! | AATTTGAATAGGAGTGCTTC+TGG | - | chr4_3:46544668-46544687 | Msa0643510:CDS | 35.0% |
| ! | TTTCAAGTCCTTGGTCTAAT+AGG | - | chr4_3:46544795-46544814 | Msa0643510:intron | 35.0% |
| GAAAGAATAAGTGAATCTGC+AGG | - | chr4_3:46544884-46544903 | Msa0643510:intron | 35.0% | |
| ! | GTTGAAGCTTTTGACCATTT+GGG | - | chr4_3:46545112-46545131 | Msa0643510:intron | 35.0% |
| ACGAGACTTATTTGGTTACT+AGG | - | chr4_3:46545599-46545618 | Msa0643510:CDS | 35.0% | |
| ! | GATATGATTGGTCATGGTAA+TGG | - | chr4_3:46545709-46545728 | Msa0643510:CDS | 35.0% |
| ATGGTTAATACTACCCCAAA+AGG | - | chr4_3:46545728-46545747 | Msa0643510:CDS | 35.0% | |
| ! | TTCTCAATGTTCAGCCTTTT+GGG | + | chr4_3:46545745-46545764 | None:intergenic | 35.0% |
| ! | TTTCTCAATGTTCAGCCTTT+TGG | + | chr4_3:46545746-46545765 | None:intergenic | 35.0% |
| ! | AAGAACCCAAAGTTAGGTTT+TGG | - | chr4_3:46545807-46545826 | Msa0643510:CDS | 35.0% |
| GTCATCCAAAACCTAACTTT+GGG | + | chr4_3:46545815-46545834 | None:intergenic | 35.0% | |
| GATTGGAAACAACCAAAATG+AGG | + | chr4_3:46545865-46545884 | None:intergenic | 35.0% | |
| AAAACAAGCACAAGCTTGAT+TGG | + | chr4_3:46545882-46545901 | None:intergenic | 35.0% | |
| AAGCTTGTGCTCCATTATTA+CGG | - | chr4_3:46545911-46545930 | Msa0643510:CDS | 35.0% | |
| TCAATGGATGAACTTGTAGA+GGG | + | chr4_3:46546117-46546136 | None:intergenic | 35.0% | |
| ATCAATGGATGAACTTGTAG+AGG | + | chr4_3:46546118-46546137 | None:intergenic | 35.0% | |
| AAGCAATCCATCTTCACTAA+GGG | + | chr4_3:46546169-46546188 | None:intergenic | 35.0% | |
| GATTTCTGATATTCTCCTAC+TGG | - | chr4_3:46546321-46546340 | Msa0643510:CDS | 35.0% | |
| CATATTAGGTACAAACGAGT+TGG | + | chr4_3:46546364-46546383 | None:intergenic | 35.0% | |
| TAACTAAGGACTGAAGTCTT+TGG | + | chr4_3:46546455-46546474 | None:intergenic | 35.0% | |
| AGACTTCAGTCCTTAGTTAA+AGG | - | chr4_3:46546456-46546475 | Msa0643510:intron | 35.0% | |
| GACTTCAGTCCTTAGTTAAA+GGG | - | chr4_3:46546457-46546476 | Msa0643510:intron | 35.0% | |
| ACTTCAGTCCTTAGTTAAAG+GGG | - | chr4_3:46546458-46546477 | Msa0643510:intron | 35.0% | |
| !!! | AAATTTTCAGAGCTTGCTGA+AGG | - | chr4_3:46546660-46546679 | Msa0643510:intron | 35.0% |
| ! | ATTATGAGTATCTTGGTAGC+GGG | - | chr4_3:46546697-46546716 | Msa0643510:intron | 35.0% |
| ATACAAGAGCAAGTGAGAAT+CGG | + | chr4_3:46546769-46546788 | None:intergenic | 35.0% | |
| TAGCAAAAACCCCTTATTCT+TGG | - | chr4_3:46546863-46546882 | Msa0643510:intron | 35.0% | |
| AGCAAAAACCCCTTATTCTT+GGG | - | chr4_3:46546864-46546883 | Msa0643510:intron | 35.0% | |
| TATACTAGTAGTTGGAAAGC+AGG | - | chr4_3:46546971-46546990 | Msa0643510:intron | 35.0% | |
| ATACTAGTAGTTGGAAAGCA+GGG | - | chr4_3:46546972-46546991 | Msa0643510:intron | 35.0% | |
| !! | GTTGTCGGTTCATAGTAAAT+AGG | + | chr4_3:46547096-46547115 | None:intergenic | 35.0% |
| CTTATGACACAGAATCAAGA+TGG | + | chr4_3:46547239-46547258 | None:intergenic | 35.0% | |
| AAGATTAAAGTTGGGTATGG+AGG | - | chr4_3:46547256-46547275 | Msa0643510:intron | 35.0% | |
| !!! | TCGCTAGGGTTTTTGAAATG+AGG | + | chr4_3:46543128-46543147 | None:intergenic | 40.0% |
| ATTGGATGGTTGAAGACTGT+TGG | + | chr4_3:46543238-46543257 | None:intergenic | 40.0% | |
| TGAATGTGAGTGAGGAATGA+TGG | + | chr4_3:46543343-46543362 | None:intergenic | 40.0% | |
| ! | AATGGTGTTGAATGTGAGTG+AGG | + | chr4_3:46543351-46543370 | None:intergenic | 40.0% |
| ! | TGGTTGCTTTCGAGTAGAAT+TGG | + | chr4_3:46544014-46544033 | None:intergenic | 40.0% |
| ! | GTTTGGTTACACTTCTAGAG+TGG | + | chr4_3:46544059-46544078 | None:intergenic | 40.0% |
| GTAACCAAACAAGCAGAAGT+TGG | - | chr4_3:46544069-46544088 | Msa0643510:intron | 40.0% | |
| CAAACCAACTTCTGCTTGTT+TGG | + | chr4_3:46544076-46544095 | None:intergenic | 40.0% | |
| !! | AGCAGAAGTTGGTTTGTGTT+TGG | - | chr4_3:46544080-46544099 | Msa0643510:intron | 40.0% |
| CGTAAAACTAGATATGGTGG+AGG | - | chr4_3:46544413-46544432 | Msa0643510:intron | 40.0% | |
| GGTTGTACCAAATCAACCTT+CGG | + | chr4_3:46544533-46544552 | None:intergenic | 40.0% | |
| !! | GAAGGTTGATTTGGTACAAC+CGG | - | chr4_3:46544532-46544551 | Msa0643510:CDS | 40.0% |
| ACAAGCAATTCAGAAGAACC+CGG | + | chr4_3:46544593-46544612 | None:intergenic | 40.0% | |
| AGATAAAAAGTCGCTGAACC+AGG | + | chr4_3:46544722-46544741 | None:intergenic | 40.0% | |
| ! | GCGACTTTTTATCTTTCTCC+CGG | - | chr4_3:46544728-46544747 | Msa0643510:intron | 40.0% |
| ! | AATCGGTAGTTTCAAGTCCT+TGG | - | chr4_3:46544786-46544805 | Msa0643510:intron | 40.0% |
| AAGTCCTTGGTCTAATAGGA+GGG | - | chr4_3:46544799-46544818 | Msa0643510:intron | 40.0% | |
| AATCCAAAACCAGGAACTGA+AGG | + | chr4_3:46544929-46544948 | None:intergenic | 40.0% | |
| CCGATCCTGTAACTGTATTA+GGG | + | chr4_3:46544958-46544977 | None:intergenic | 40.0% | |
| CCCTAATACAGTTACAGGAT+CGG | - | chr4_3:46544955-46544974 | Msa0643510:intron | 40.0% | |
| ! | AGGGGGAGTCTTAAACTTTT+GGG | + | chr4_3:46545041-46545060 | None:intergenic | 40.0% |
| ! | TAGGGGGAGTCTTAAACTTT+TGG | + | chr4_3:46545042-46545061 | None:intergenic | 40.0% |
| ! | TTTAAGACTCCCCCTAAGAA+GGG | - | chr4_3:46545046-46545065 | Msa0643510:intron | 40.0% |
| ! | GGTTGAAGCTTTTGACCATT+TGG | - | chr4_3:46545111-46545130 | Msa0643510:intron | 40.0% |
| TTTGAGGATAGACACCCAAA+TGG | + | chr4_3:46545129-46545148 | None:intergenic | 40.0% | |
| TCTATCCTCAAATTGAGCAG+TGG | - | chr4_3:46545137-46545156 | Msa0643510:intron | 40.0% | |
| GTCTCAATCTTGTGAAGCAA+AGG | + | chr4_3:46545205-46545224 | None:intergenic | 40.0% | |
| GATTGAGACAAGTCATGTTC+AGG | - | chr4_3:46545216-46545235 | Msa0643510:intron | 40.0% | |
| ! | TCTCAATGTTCAGCCTTTTG+GGG | + | chr4_3:46545744-46545763 | None:intergenic | 40.0% |
| TGGGTTCTTTAAGCCTTTGT+GGG | + | chr4_3:46545796-46545815 | None:intergenic | 40.0% | |
| TTGGGTTCTTTAAGCCTTTG+TGG | + | chr4_3:46545797-46545816 | None:intergenic | 40.0% | |
| GGCTTAAAGAACCCAAAGTT+AGG | - | chr4_3:46545801-46545820 | Msa0643510:CDS | 40.0% | |
| GGTCATCCAAAACCTAACTT+TGG | + | chr4_3:46545816-46545835 | None:intergenic | 40.0% | |
| !!! | ACTGGTTTTCTTAGTTTGGG+TGG | + | chr4_3:46545837-46545856 | None:intergenic | 40.0% |
| AATGGATGAACTTGTAGAGG+GGG | + | chr4_3:46546115-46546134 | None:intergenic | 40.0% | |
| CAATGGATGAACTTGTAGAG+GGG | + | chr4_3:46546116-46546135 | None:intergenic | 40.0% | |
| ! | CCAGTCTTGAGTCTTATCAA+TGG | + | chr4_3:46546133-46546152 | None:intergenic | 40.0% |
| CCATTGATAAGACTCAAGAC+TGG | - | chr4_3:46546130-46546149 | Msa0643510:CDS | 40.0% | |
| GAAGCAATCCATCTTCACTA+AGG | + | chr4_3:46546170-46546189 | None:intergenic | 40.0% | |
| CATACATTTGGAAGCCTCTA+TGG | + | chr4_3:46546220-46546239 | None:intergenic | 40.0% | |
| ! | TTCATCAGATTTTCTGCAGC+AGG | - | chr4_3:46546590-46546609 | Msa0643510:intron | 40.0% |
| !! | TTATGAGTATCTTGGTAGCG+GGG | - | chr4_3:46546698-46546717 | Msa0643510:intron | 40.0% |
| CTTTCCTAGAACATCCAAAG+TGG | - | chr4_3:46546799-46546818 | Msa0643510:intron | 40.0% | |
| ! | TTCTCTGGAAACCTATCCTT+TGG | + | chr4_3:46546900-46546919 | None:intergenic | 40.0% |
| ACTACGGAGATGTATTTCTC+TGG | + | chr4_3:46546915-46546934 | None:intergenic | 40.0% | |
| ACTACTAGTATACATGCTCC+TGG | + | chr4_3:46546963-46546982 | None:intergenic | 40.0% | |
| GGAGCATGTATACTAGTAGT+TGG | - | chr4_3:46546963-46546982 | Msa0643510:intron | 40.0% | |
| CAGTACAAGGCAAAAATTGG+GGG | + | chr4_3:46546999-46547018 | None:intergenic | 40.0% | |
| CCAGTACAAGGCAAAAATTG+GGG | + | chr4_3:46547000-46547019 | None:intergenic | 40.0% | |
| CCCAGTACAAGGCAAAAATT+GGG | + | chr4_3:46547001-46547020 | None:intergenic | 40.0% | |
| ! | CCCAATTTTTGCCTTGTACT+GGG | - | chr4_3:46546998-46547017 | Msa0643510:intron | 40.0% |
| TCCCAGTACAAGGCAAAAAT+TGG | + | chr4_3:46547002-46547021 | None:intergenic | 40.0% | |
| TCAGATTCTGTCTCCATAAC+AGG | + | chr4_3:46547328-46547347 | None:intergenic | 40.0% | |
| TGAGAACGGAGGAGAGATTA+GGG | + | chr4_3:46543212-46543231 | None:intergenic | 45.0% | |
| AAGACTGTTGGAGGTGAGAA+CGG | + | chr4_3:46543226-46543245 | None:intergenic | 45.0% | |
| AGCAGAGAAGAAGGAGAAGA+GGG | + | chr4_3:46543274-46543293 | None:intergenic | 45.0% | |
| AAGCAGAGAAGAAGGAGAAG+AGG | + | chr4_3:46543275-46543294 | None:intergenic | 45.0% | |
| ! | CCTGAAGATAATGGCGAGAA+AGG | + | chr4_3:46543307-46543326 | None:intergenic | 45.0% |
| CCTTTCTCGCCATTATCTTC+AGG | - | chr4_3:46543304-46543323 | Msa0643510:three_prime_UTR | 45.0% | |
| ! | AGTGGCTAGAAGTGAGTTGA+AGG | + | chr4_3:46543750-46543769 | None:intergenic | 45.0% |
| TTGGCTTCCGATTCCAGAAT+TGG | + | chr4_3:46543954-46543973 | None:intergenic | 45.0% | |
| ! | TTGTTGGGTATCGTCTGCAT+TGG | - | chr4_3:46544356-46544375 | Msa0643510:CDS | 45.0% |
| CGTCTGCATTGGAACTATGT+TGG | - | chr4_3:46544367-46544386 | Msa0643510:intron | 45.0% | |
| !! | TGGAGGTGTTGTTACTCCTA+TGG | - | chr4_3:46544430-46544449 | Msa0643510:intron | 45.0% |
| ! | AGTGAAGCCGAAGGTTGATT+TGG | - | chr4_3:46544523-46544542 | Msa0643510:CDS | 45.0% |
| CTTGAAATCGGCTGATGTAG+TGG | + | chr4_3:46544617-46544636 | None:intergenic | 45.0% | |
| CGACGACTAGGACTTGAAAT+CGG | + | chr4_3:46544629-46544648 | None:intergenic | 45.0% | |
| AGTGCTTCTGGTCGTTCTAT+TGG | - | chr4_3:46544680-46544699 | Msa0643510:CDS | 45.0% | |
| GTTCTATTGGCAACTTGTCG+AGG | - | chr4_3:46544693-46544712 | Msa0643510:intron | 45.0% | |
| CAAGTCCTTGGTCTAATAGG+AGG | - | chr4_3:46544798-46544817 | Msa0643510:intron | 45.0% | |
| GATAACATCAGAGGAAGAGC+TGG | - | chr4_3:46544838-46544857 | Msa0643510:intron | 45.0% | |
| GCCGATCCTGTAACTGTATT+AGG | + | chr4_3:46544959-46544978 | None:intergenic | 45.0% | |
| !! | GTCTTAAACTTTTGGGAGCC+TGG | + | chr4_3:46545034-46545053 | None:intergenic | 45.0% |
| ! | GTTTAAGACTCCCCCTAAGA+AGG | - | chr4_3:46545045-46545064 | Msa0643510:intron | 45.0% |
| ACCTATGTCCATGGAAGAAG+CGG | - | chr4_3:46545090-46545109 | Msa0643510:intron | 45.0% | |
| ! | AAGGAAGGGTGTGGTACAAA+TGG | + | chr4_3:46545343-46545362 | None:intergenic | 45.0% |
| ATTTGTACCACACCCTTCCT+TGG | - | chr4_3:46545342-46545361 | Msa0643510:intron | 45.0% | |
| ! | ACATCCCTTTTGCCAAGGAA+GGG | + | chr4_3:46545357-46545376 | None:intergenic | 45.0% |
| CTTGAATCTTCAGCCCACAA+AGG | - | chr4_3:46545780-46545799 | Msa0643510:CDS | 45.0% | |
| ATGAACACAGCTGCCAAACT+TGG | - | chr4_3:46546039-46546058 | Msa0643510:CDS | 45.0% | |
| GGCAATGATACACTGTCTAC+AGG | - | chr4_3:46546087-46546106 | Msa0643510:CDS | 45.0% | |
| TCTTCACTAAGGGTAACTGC+TGG | + | chr4_3:46546159-46546178 | None:intergenic | 45.0% | |
| GCAGTTACCCTTAGTGAAGA+TGG | - | chr4_3:46546159-46546178 | Msa0643510:CDS | 45.0% | |
| GCATGCAAACATGAACCAGT+AGG | + | chr4_3:46546339-46546358 | None:intergenic | 45.0% | |
| TGTGGGGACTGTTGCATATT+AGG | + | chr4_3:46546378-46546397 | None:intergenic | 45.0% | |
| AGTCCTTAGTTAAAGGGGAG+TGG | - | chr4_3:46546463-46546482 | Msa0643510:intron | 45.0% | |
| GTCCTTAGTTAAAGGGGAGT+GGG | - | chr4_3:46546464-46546483 | Msa0643510:intron | 45.0% | |
| TACACTGTGCAAAGAATCCG+AGG | - | chr4_3:46546525-46546544 | Msa0643510:intron | 45.0% | |
| AAGAGCAAGTGAGAATCGGA+TGG | + | chr4_3:46546765-46546784 | None:intergenic | 45.0% | |
| GCATCCACTTTGGATGTTCT+AGG | + | chr4_3:46546806-46546825 | None:intergenic | 45.0% | |
| TCCAAAGTGGATGCTACATG+TGG | - | chr4_3:46546812-46546831 | Msa0643510:intron | 45.0% | |
| TCCACATGTAGCATCCACTT+TGG | + | chr4_3:46546816-46546835 | None:intergenic | 45.0% | |
| GAAGGACTCCCAAGAATAAG+GGG | + | chr4_3:46546875-46546894 | None:intergenic | 45.0% | |
| GGAAGGACTCCCAAGAATAA+GGG | + | chr4_3:46546876-46546895 | None:intergenic | 45.0% | |
| AGGAAGGACTCCCAAGAATA+AGG | + | chr4_3:46546877-46546896 | None:intergenic | 45.0% | |
| ! | GAAACCTATCCTTTGGAGGA+AGG | + | chr4_3:46546893-46546912 | None:intergenic | 45.0% |
| TCTGGAAACCTATCCTTTGG+AGG | + | chr4_3:46546897-46546916 | None:intergenic | 45.0% | |
| AGAAGGGACTGAAGACACTA+CGG | + | chr4_3:46546931-46546950 | None:intergenic | 45.0% | |
| ! | CCCCAATTTTTGCCTTGTAC+TGG | - | chr4_3:46546997-46547016 | Msa0643510:intron | 45.0% |
| CAGCTTCTTATCCCAGTACA+AGG | + | chr4_3:46547012-46547031 | None:intergenic | 45.0% | |
| GAAGCTGCAACTTTCTCTTC+AGG | - | chr4_3:46547025-46547044 | Msa0643510:intron | 45.0% | |
| CTGCAACTTTCTCTTCAGGT+GGG | - | chr4_3:46547029-46547048 | Msa0643510:intron | 45.0% | |
| TAGTAACATTGGGGCTACAG+AGG | + | chr4_3:46547060-46547079 | None:intergenic | 45.0% | |
| TTCAGGGAAGAACAGCACTT+TGG | - | chr4_3:46547209-46547228 | Msa0643510:intron | 45.0% | |
| TCAGGGAAGAACAGCACTTT+GGG | - | chr4_3:46547210-46547229 | Msa0643510:intron | 45.0% | |
| !! | TTGGGTATGGAGGTATCGTT+AGG | - | chr4_3:46547266-46547285 | Msa0643510:CDS | 45.0% |
| !! | TGGGTATGGAGGTATCGTTA+GGG | - | chr4_3:46547267-46547286 | Msa0643510:CDS | 45.0% |
| ! | ATCGTTAGGGGTATGCATCT+AGG | - | chr4_3:46547280-46547299 | Msa0643510:CDS | 45.0% |
| CATGTCGAATGTTAGCGGAA+GGG | + | chr4_3:46547383-46547402 | None:intergenic | 45.0% | |
| TCATGTCGAATGTTAGCGGA+AGG | + | chr4_3:46547384-46547403 | None:intergenic | 45.0% | |
| TCCGCTAACATTCGACATGA+CGG | - | chr4_3:46547384-46547403 | Msa0643510:intron | 45.0% | |
| AATGTCCGGCGTGATAATCT+GGG | - | chr4_3:46547549-46547568 | Msa0643510:CDS | 45.0% | |
| AAGAACCCAGATTATCACGC+CGG | + | chr4_3:46547557-46547576 | None:intergenic | 45.0% | |
| !!! | TATTAAAAAATGATTTTTTT+CGG | - | chr4_3:46544141-46544160 | Msa0643510:intron | 5.0% |
| !!! | TATTTTTTTTTTTTAAAATG+TGG | - | chr4_3:46544268-46544287 | Msa0643510:CDS | 5.0% |
| !!! | ATTTTTTTTTTTTAAAATGT+GGG | - | chr4_3:46544269-46544288 | Msa0643510:CDS | 5.0% |
| TGGAGGTGAAGAAGAAGCCA+TGG | + | chr4_3:46543157-46543176 | None:intergenic | 50.0% | |
| ! | CGGAGGAGAGATTAGGGTTT+TGG | + | chr4_3:46543206-46543225 | None:intergenic | 50.0% |
| GTGAGAACGGAGGAGAGATT+AGG | + | chr4_3:46543213-46543232 | None:intergenic | 50.0% | |
| GGATGGTTGAAGACTGTTGG+AGG | + | chr4_3:46543235-46543254 | None:intergenic | 50.0% | |
| ! | GAGATGAGAGCGTGATTGGA+TGG | + | chr4_3:46543252-46543271 | None:intergenic | 50.0% |
| GAAAGCGGAAGCAGAGAAGA+AGG | + | chr4_3:46543283-46543302 | None:intergenic | 50.0% | |
| AATGGCGAGAAAGGCGAAAG+CGG | + | chr4_3:46543298-46543317 | None:intergenic | 50.0% | |
| !! | GCTTTTAGGAGTGAAGCCGA+AGG | - | chr4_3:46544514-46544533 | Msa0643510:CDS | 50.0% |
| AATTCAGAAGAACCCGGCTG+CGG | + | chr4_3:46544587-46544606 | None:intergenic | 50.0% | |
| AGTCCTAGTCGTCGTGTTGA+TGG | - | chr4_3:46544635-46544654 | Msa0643510:CDS | 50.0% | |
| TCACCATCAACACGACGACT+AGG | + | chr4_3:46544641-46544660 | None:intergenic | 50.0% | |
| !! | AGTCGTCGTGTTGATGGTGA+TGG | - | chr4_3:46544641-46544660 | Msa0643510:CDS | 50.0% |
| TGTGCAGGTGATACTACTCC+GGG | + | chr4_3:46544749-46544768 | None:intergenic | 50.0% | |
| CTGTGCAGGTGATACTACTC+CGG | + | chr4_3:46544750-46544769 | None:intergenic | 50.0% | |
| GAGTACAGCAGGACTGGAAT+CGG | - | chr4_3:46544769-46544788 | Msa0643510:intron | 50.0% | |
| GATGCCCTCCTATTAGACCA+AGG | + | chr4_3:46544806-46544825 | None:intergenic | 50.0% | |
| AAACCAGGAACTGAAGGTGG+TGG | + | chr4_3:46544923-46544942 | None:intergenic | 50.0% | |
| CCAAAACCAGGAACTGAAGG+TGG | + | chr4_3:46544926-46544945 | None:intergenic | 50.0% | |
| ! | CCACCTTCAGTTCCTGGTTT+TGG | - | chr4_3:46544923-46544942 | Msa0643510:intron | 50.0% |
| GCGAGCCCTAATACAGTTAC+AGG | - | chr4_3:46544950-46544969 | Msa0643510:intron | 50.0% | |
| ACAGGATCGGCTAGTAACTC+TGG | - | chr4_3:46544968-46544987 | Msa0643510:intron | 50.0% | |
| ATACACCATTGAGGCCTGTG+AGG | - | chr4_3:46545002-46545021 | Msa0643510:intron | 50.0% | |
| ACCACCTTCTCCCTTCTTAG+GGG | + | chr4_3:46545059-46545078 | None:intergenic | 50.0% | |
| CACCACCTTCTCCCTTCTTA+GGG | + | chr4_3:46545060-46545079 | None:intergenic | 50.0% | |
| TCACCACCTTCTCCCTTCTT+AGG | + | chr4_3:46545061-46545080 | None:intergenic | 50.0% | |
| TCTTCCATGGACATAGGTGG+AGG | + | chr4_3:46545088-46545107 | None:intergenic | 50.0% | |
| GCTTCTTCCATGGACATAGG+TGG | + | chr4_3:46545091-46545110 | None:intergenic | 50.0% | |
| ACCGCTTCTTCCATGGACAT+AGG | + | chr4_3:46545094-46545113 | None:intergenic | 50.0% | |
| AGCTTCAACCGCTTCTTCCA+TGG | + | chr4_3:46545101-46545120 | None:intergenic | 50.0% | |
| TCACGCCACTGCTCAATTTG+AGG | + | chr4_3:46545145-46545164 | None:intergenic | 50.0% | |
| CAAATTGAGCAGTGGCGTGA+TGG | - | chr4_3:46545145-46545164 | Msa0643510:intron | 50.0% | |
| CACACCCTTCCTTGGCAAAA+GGG | - | chr4_3:46545350-46545369 | Msa0643510:intron | 50.0% | |
| ! | GACATCCCTTTTGCCAAGGA+AGG | + | chr4_3:46545358-46545377 | None:intergenic | 50.0% |
| GCTGCATTCTACTCTTGTGC+AGG | - | chr4_3:46546194-46546213 | Msa0643510:CDS | 50.0% | |
| TACTCTTGTGCAGGCCATAG+AGG | - | chr4_3:46546203-46546222 | Msa0643510:CDS | 50.0% | |
| ! | TCCTTTGGTTCCTCTCATGC+AGG | - | chr4_3:46546404-46546423 | Msa0643510:intron | 50.0% |
| TCCTGCATGAGAGGAACCAA+AGG | + | chr4_3:46546408-46546427 | None:intergenic | 50.0% | |
| GACCCACTCCCCTTTAACTA+AGG | + | chr4_3:46546469-46546488 | None:intergenic | 50.0% | |
| GTTAAAGGGGAGTGGGTCAA+AGG | - | chr4_3:46546471-46546490 | Msa0643510:intron | 50.0% | |
| TCAGCTCGAACACTGCTTTG+AGG | + | chr4_3:46546504-46546523 | None:intergenic | 50.0% | |
| CTGTGCAAAGAATCCGAGGT+AGG | - | chr4_3:46546529-46546548 | Msa0643510:intron | 50.0% | |
| CCATGATTACGTGCCTACCT+CGG | + | chr4_3:46546545-46546564 | None:intergenic | 50.0% | |
| GTGGATGCAACGTCTTATGC+TGG | - | chr4_3:46546831-46546850 | Msa0643510:intron | 50.0% | |
| GAGTCCTTCCTCCAAAGGAT+AGG | - | chr4_3:46546886-46546905 | Msa0643510:intron | 50.0% | |
| GCTGCAACTTTCTCTTCAGG+TGG | - | chr4_3:46547028-46547047 | Msa0643510:intron | 50.0% | |
| !! | GGGTATGGAGGTATCGTTAG+GGG | - | chr4_3:46547268-46547287 | Msa0643510:CDS | 50.0% |
| GCCGTCATGTCGAATGTTAG+CGG | + | chr4_3:46547388-46547407 | None:intergenic | 50.0% | |
| TATCACGCCGGACATTGTGA+CGG | + | chr4_3:46547545-46547564 | None:intergenic | 50.0% | |
| CAATGTCCGGCGTGATAATC+TGG | - | chr4_3:46547548-46547567 | Msa0643510:CDS | 50.0% | |
| AACCCTAGCGAGCGAAACCA+TGG | - | chr4_3:46543137-46543156 | Msa0643510:three_prime_UTR | 55.0% | |
| AGCCATGGTTTCGCTCGCTA+GGG | + | chr4_3:46543142-46543161 | None:intergenic | 55.0% | |
| AAGCCATGGTTTCGCTCGCT+AGG | + | chr4_3:46543143-46543162 | None:intergenic | 55.0% | |
| ACTGTTGGAGGTGAGAACGG+AGG | + | chr4_3:46543223-46543242 | None:intergenic | 55.0% | |
| ! | GAGGGAGATGAGAGCGTGAT+TGG | + | chr4_3:46543256-46543275 | None:intergenic | 55.0% |
| GGTGGCTTCTTCAACGACTC+CGG | + | chr4_3:46544554-46544573 | None:intergenic | 55.0% | |
| ACCGAAGTCTAAACCGCAGC+CGG | - | chr4_3:46544571-46544590 | Msa0643510:CDS | 55.0% | |
| TCACCTGCACAGAGTACAGC+AGG | - | chr4_3:46544758-46544777 | Msa0643510:intron | 55.0% | |
| AGTCCTGCTGTACTCTGTGC+AGG | + | chr4_3:46544764-46544783 | None:intergenic | 55.0% | |
| TGCACAGAGTACAGCAGGAC+TGG | - | chr4_3:46544763-46544782 | Msa0643510:intron | 55.0% | |
| ACTCCACCACCTTCAGTTCC+TGG | - | chr4_3:46544917-46544936 | Msa0643510:intron | 55.0% | |
| GGGCTCGCTAATCCAAAACC+AGG | + | chr4_3:46544938-46544957 | None:intergenic | 55.0% | |
| GACATCCTCACAGGCCTCAA+TGG | + | chr4_3:46545010-46545029 | None:intergenic | 55.0% | |
| ACTCCCCCTAAGAAGGGAGA+AGG | - | chr4_3:46545052-46545071 | Msa0643510:intron | 55.0% | |
| CCACCTTCTCCCTTCTTAGG+GGG | + | chr4_3:46545058-46545077 | None:intergenic | 55.0% | |
| CCATGGACATAGGTGGAGGA+AGG | + | chr4_3:46545084-46545103 | None:intergenic | 55.0% | |
| CCTTCCTCCACCTATGTCCA+TGG | - | chr4_3:46545081-46545100 | Msa0643510:intron | 55.0% | |
| !! | GGCGTGATGGACTCAGACAA+TGG | - | chr4_3:46545158-46545177 | Msa0643510:intron | 55.0% |
| ! | CCTTTTGCCAAGGAAGGGTG+TGG | + | chr4_3:46545352-46545371 | None:intergenic | 55.0% |
| CCACACCCTTCCTTGGCAAA+AGG | - | chr4_3:46545349-46545368 | Msa0643510:intron | 55.0% | |
| ! | GCTCGACATCCCTTTTGCCA+AGG | + | chr4_3:46545362-46545381 | None:intergenic | 55.0% |
| TATGCAACAGTCCCCACAGC+AGG | - | chr4_3:46546380-46546399 | Msa0643510:intron | 55.0% | |
| ATGCAACAGTCCCCACAGCA+GGG | - | chr4_3:46546381-46546400 | Msa0643510:intron | 55.0% | |
| AACCAAAGGACCCTGCTGTG+GGG | + | chr4_3:46546394-46546413 | None:intergenic | 55.0% | |
| GAACCAAAGGACCCTGCTGT+GGG | + | chr4_3:46546395-46546414 | None:intergenic | 55.0% | |
| TCGACACAGTCCTGCATGAG+AGG | + | chr4_3:46546417-46546436 | None:intergenic | 55.0% | |
| CCGAGGTAGGCACGTAATCA+TGG | - | chr4_3:46546542-46546561 | Msa0643510:intron | 55.0% | |
| CTTGGGAGTCCTTCCTCCAA+AGG | - | chr4_3:46546881-46546900 | Msa0643510:intron | 55.0% | |
| CTCCTGGATGCAGCACAGAA+GGG | + | chr4_3:46546947-46546966 | None:intergenic | 55.0% | |
| GGCTGCGGTTTAGACTTCGG+TGG | + | chr4_3:46544572-46544591 | None:intergenic | 60.0% | |
| CCCGGCTGCGGTTTAGACTT+CGG | + | chr4_3:46544575-46544594 | None:intergenic | 60.0% | |
| CCGAAGTCTAAACCGCAGCC+GGG | - | chr4_3:46544572-46544591 | Msa0643510:CDS | 60.0% | |
| GGCAACTTGTCGAGGTCACC+TGG | - | chr4_3:46544701-46544720 | Msa0643510:intron | 60.0% | |
| AGGCCTGTGAGGATGTCTCC+AGG | - | chr4_3:46545013-46545032 | Msa0643510:intron | 60.0% | |
| GAGCCTGGAGACATCCTCAC+AGG | + | chr4_3:46545019-46545038 | None:intergenic | 60.0% | |
| CCCCCTAAGAAGGGAGAAGG+TGG | - | chr4_3:46545055-46545074 | Msa0643510:intron | 60.0% | |
| GGAACCAAAGGACCCTGCTG+TGG | + | chr4_3:46546396-46546415 | None:intergenic | 60.0% | |
| GTCCCTTCTGTGCTGCATCC+AGG | - | chr4_3:46546942-46546961 | Msa0643510:intron | 60.0% | |
| GCTCCTGGATGCAGCACAGA+AGG | + | chr4_3:46546948-46546967 | None:intergenic | 60.0% | |
| CTGGAGGCCGTCACAATGTC+CGG | - | chr4_3:46547535-46547554 | Msa0643510:CDS | 60.0% | |
| GTCCCCACAGCAGGGTCCTT+TGG | - | chr4_3:46546389-46546408 | Msa0643510:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 46543040 | 46547699 | 46543040 | ID=Msa0643510;Name=Msa0643510 |
| chr4_3 | mRNA | 46543040 | 46547699 | 46543040 | ID=Msa0643510-mRNA-1;Parent=Msa0643510;Name=Msa0643510-mRNA-1;_AED=0.06;_eAED=0.06;_QI=116|0.83|0.71|1|1|1|7|345|675 |
| chr4_3 | exon | 46543040 | 46543525 | 46543040 | ID=Msa0643510-mRNA-1:exon:10863;Parent=Msa0643510-mRNA-1 |
| chr4_3 | exon | 46543693 | 46544069 | 46543693 | ID=Msa0643510-mRNA-1:exon:10862;Parent=Msa0643510-mRNA-1 |
| chr4_3 | exon | 46544193 | 46544378 | 46544193 | ID=Msa0643510-mRNA-1:exon:10861;Parent=Msa0643510-mRNA-1 |
| chr4_3 | exon | 46544505 | 46544703 | 46544505 | ID=Msa0643510-mRNA-1:exon:10860;Parent=Msa0643510-mRNA-1 |
| chr4_3 | exon | 46545502 | 46546395 | 46545502 | ID=Msa0643510-mRNA-1:exon:10859;Parent=Msa0643510-mRNA-1 |
| chr4_3 | exon | 46547258 | 46547318 | 46547258 | ID=Msa0643510-mRNA-1:exon:10858;Parent=Msa0643510-mRNA-1 |
| chr4_3 | exon | 46547414 | 46547699 | 46547414 | ID=Msa0643510-mRNA-1:exon:10857;Parent=Msa0643510-mRNA-1 |
| chr4_3 | five_prime_UTR | 46547584 | 46547699 | 46547584 | ID=Msa0643510-mRNA-1:five_prime_utr;Parent=Msa0643510-mRNA-1 |
| chr4_3 | CDS | 46547414 | 46547583 | 46547414 | ID=Msa0643510-mRNA-1:cds;Parent=Msa0643510-mRNA-1 |
| chr4_3 | CDS | 46547258 | 46547318 | 46547258 | ID=Msa0643510-mRNA-1:cds;Parent=Msa0643510-mRNA-1 |
| chr4_3 | CDS | 46545502 | 46546395 | 46545502 | ID=Msa0643510-mRNA-1:cds;Parent=Msa0643510-mRNA-1 |
| chr4_3 | CDS | 46544505 | 46544703 | 46544505 | ID=Msa0643510-mRNA-1:cds;Parent=Msa0643510-mRNA-1 |
| chr4_3 | CDS | 46544193 | 46544378 | 46544193 | ID=Msa0643510-mRNA-1:cds;Parent=Msa0643510-mRNA-1 |
| chr4_3 | CDS | 46543693 | 46544069 | 46543693 | ID=Msa0643510-mRNA-1:cds;Parent=Msa0643510-mRNA-1 |
| chr4_3 | CDS | 46543385 | 46543525 | 46543385 | ID=Msa0643510-mRNA-1:cds;Parent=Msa0643510-mRNA-1 |
| chr4_3 | three_prime_UTR | 46543040 | 46543384 | 46543040 | ID=Msa0643510-mRNA-1:three_prime_utr;Parent=Msa0643510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
