Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602200 | XP_003606453.1 | 96.603 | 677 | 20 | 1 | 2 | 675 | 3 | 679 | 0.0 | 1333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602200 | sp|Q6GPP7|TM209_XENLA | 22.273 | 220 | 129 | 5 | 465 | 669 | 366 | 558 | 8.36e-11 | 68.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0602200 | Msa0643510 | 0.904679 | 9.535367e-80 | -8.615850e-47 |
| Msa0602200 | Msa0682980 | 0.980929 | 2.282062e-151 | -8.615850e-47 |
| Msa0602200 | Msa0683050 | 0.996825 | 9.157523e-233 | -8.615850e-47 |
| Msa0602200 | Msa1321200 | 0.812220 | 4.729972e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602200 | MtrunA17_Chr4g0029691 | 96.603 | 677 | 20 | 1 | 2 | 675 | 3 | 679 | 0.0 | 1333 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602200 | AT1G07970.1 | 55.942 | 690 | 274 | 13 | 4 | 675 | 16 | 693 | 0.0 | 746 |
Find 201 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCTTCGGTTCCTGGTTT+TGG | 0.147160 | 4_2:+45616029 | Msa0602200:CDS |
| AAGTTATCATGTAATGTTTC+TGG | 0.165870 | 4_2:+45618596 | Msa0602200:three_prime_UTR |
| GCCGATCCTGTAACTGTATT+AGG | 0.190566 | 4_2:-45616062 | None:intergenic |
| TCACCACCTTCTCCCTTCTT+AGG | 0.211557 | 4_2:-45616164 | None:intergenic |
| CAATGTCCGGCGTGATAATC+TGG | 0.225087 | 4_2:+45618628 | Msa0602200:three_prime_UTR |
| AGACTTCAGTCCTTAGTTAA+AGG | 0.240452 | 4_2:+45617536 | Msa0602200:CDS |
| CTGCGGAGAGATTAGGGTTT+TGG | 0.242837 | 4_2:-45614325 | None:intergenic |
| ACTCCACCACCTTCGGTTCC+TGG | 0.286526 | 4_2:+45616023 | Msa0602200:CDS |
| AGGAAGGACTCCCAAGAATA+AGG | 0.295101 | 4_2:-45617954 | None:intergenic |
| GAGGGAGATGAGAGCGTGAT+TGG | 0.297125 | 4_2:-45614375 | None:intergenic |
| CATACATTTGGAAGCCTCTA+TGG | 0.297607 | 4_2:-45617297 | None:intergenic |
| TGTGGGGACTGTTGCATATT+AGG | 0.300222 | 4_2:-45617455 | None:intergenic |
| TTTAAGCATTCTACCTGTTA+TGG | 0.304026 | 4_2:+45618392 | Msa0602200:CDS |
| CACCACCTTCTCCCTTCTTA+GGG | 0.313156 | 4_2:-45616163 | None:intergenic |
| TTTCAAGTCCTTGGTCTAAT+AGG | 0.318049 | 4_2:+45615901 | Msa0602200:CDS |
| TGTAATTGATATACCAAGTT+TGG | 0.323780 | 4_2:-45617132 | None:intergenic |
| TTCTCTGGAAACCTATCCTT+TGG | 0.330000 | 4_2:-45617977 | None:intergenic |
| AGAGGACTGCGGAGAGATTA+GGG | 0.332088 | 4_2:-45614331 | None:intergenic |
| GTAAACGGAGAATTTGGATT+TGG | 0.333710 | 4_2:-45614303 | None:intergenic |
| GAGAGGACTGCGGAGAGATT+AGG | 0.336154 | 4_2:-45614332 | None:intergenic |
| GCATCCACTTTGGATGTTCT+AGG | 0.342075 | 4_2:-45617883 | None:intergenic |
| TGCTACCCAGTTCTGTTTAG+TGG | 0.348975 | 4_2:-45614179 | None:intergenic |
| GACTTCAGTCCTTAGTTAAA+GGG | 0.360236 | 4_2:+45617537 | Msa0602200:CDS |
| TCAGGGAAGAACAGCACTTT+GGG | 0.360957 | 4_2:+45618290 | Msa0602200:intron |
| GCGAGCCCTAATACAGTTAC+AGG | 0.361786 | 4_2:+45616056 | Msa0602200:CDS |
| AATTTGAATAGGAGTGCTTC+TGG | 0.363589 | 4_2:+45615774 | Msa0602200:CDS |
| TAACTAAGGACTGAAGTCTT+TGG | 0.365536 | 4_2:-45617532 | None:intergenic |
| TCAGATTCTGTCTCCATAAC+AGG | 0.368488 | 4_2:-45618405 | None:intergenic |
| GTCCCCACAGCAGGGTCCTT+TGG | 0.372286 | 4_2:+45617469 | Msa0602200:CDS |
| CCTTTCTCGCCATTATCTTC+AGG | 0.376921 | 4_2:+45614426 | Msa0602200:CDS |
| GACCCACTCCCCTTTAACTA+AGG | 0.377004 | 4_2:-45617546 | None:intergenic |
| GAAGCTGCAACTTTCTCTTC+AGG | 0.378961 | 4_2:+45618105 | Msa0602200:CDS |
| GAGAATTTGGATTTGGATTG+TGG | 0.382023 | 4_2:-45614296 | None:intergenic |
| CCGATCCTGTAACTGTATTA+GGG | 0.387249 | 4_2:-45616061 | None:intergenic |
| GATTGAGACAAGTCATGTTC+AGG | 0.391265 | 4_2:+45616322 | Msa0602200:CDS |
| AGTGCTTCTGGTCGTTCTAT+TGG | 0.391650 | 4_2:+45615786 | Msa0602200:CDS |
| AGTGAAGCCGAAGGTTGATT+TGG | 0.392715 | 4_2:+45615629 | Msa0602200:CDS |
| CTGTGTCATAAGATTAAAGT+TGG | 0.400152 | 4_2:+45618327 | Msa0602200:CDS |
| AGTCCTAGTCGTCGTGTTGA+TGG | 0.401203 | 4_2:+45615741 | Msa0602200:CDS |
| GCACTGCCACTAAACAGAAC+TGG | 0.403028 | 4_2:+45614173 | Msa0602200:five_prime_UTR |
| GGAAGGACTCCCAAGAATAA+GGG | 0.409561 | 4_2:-45617953 | None:intergenic |
| GTGATGGTTCGAATTTGAAT+AGG | 0.413755 | 4_2:+45615763 | Msa0602200:CDS |
| TTGAAGAATTATGAGTATCT+TGG | 0.415652 | 4_2:+45617770 | Msa0602200:CDS |
| TTTGTTGTTGTAGGGAAAAT+GGG | 0.424575 | 4_2:+45614529 | Msa0602200:intron |
| GAAAGCGGAAGCAGAGAAGA+AGG | 0.431888 | 4_2:-45614402 | None:intergenic |
| GTCCCTTCTGTGCTGCATCC+AGG | 0.432320 | 4_2:+45618022 | Msa0602200:CDS |
| TCACGCCACTGCTCAATTTG+AGG | 0.434711 | 4_2:-45616248 | None:intergenic |
| GCAGTTACCCTTAGTGAAGA+TGG | 0.437512 | 4_2:+45617239 | Msa0602200:CDS |
| GGCAACTTGTCGAGGTCGCC+TGG | 0.441149 | 4_2:+45615807 | Msa0602200:CDS |
| AACTTTACAAGCTGTATAAG+AGG | 0.441528 | 4_2:-45614583 | None:intergenic |
| CTGGAGGCCGTCACAATGTC+CGG | 0.442981 | 4_2:+45618615 | Msa0602200:three_prime_UTR |
| AAGTGGTTACCTGAAGATAA+TGG | 0.448628 | 4_2:-45614435 | None:intergenic |
| TCCTTTGGTTCCTCTCATGC+AGG | 0.452367 | 4_2:+45617484 | Msa0602200:CDS |
| AAGCCATGGTTTCGCTCGCT+AGG | 0.458359 | 4_2:-45614262 | None:intergenic |
| TTCAGGGAAGAACAGCACTT+TGG | 0.460830 | 4_2:+45618289 | Msa0602200:intron |
| ACCGAAGTCTAAACCGCAGC+CGG | 0.462626 | 4_2:+45615677 | Msa0602200:CDS |
| AGCTTCAACCGCTTCTTCCA+TGG | 0.463538 | 4_2:-45616204 | None:intergenic |
| AATCGGTAGTTTCAAGTCCT+TGG | 0.469923 | 4_2:+45615892 | Msa0602200:CDS |
| TTGGGTATGGAGGTATCGTT+AGG | 0.470120 | 4_2:+45618346 | Msa0602200:CDS |
| ATCAATGGATGAACTTGTAG+AGG | 0.470366 | 4_2:-45617195 | None:intergenic |
| CCTGAAGATAATGGCGAGAA+AGG | 0.473170 | 4_2:-45614426 | None:intergenic |
| GAAGGTTGATTTGGTACAAC+CGG | 0.473791 | 4_2:+45615638 | Msa0602200:CDS |
| CAGCTTCTTATCCCAGTACA+AGG | 0.477772 | 4_2:-45618089 | None:intergenic |
| CATAAGATTAAAGTTGGGTA+TGG | 0.478199 | 4_2:+45618333 | Msa0602200:CDS |
| TACTCTTGTGCAGGCCATAG+AGG | 0.478232 | 4_2:+45617283 | Msa0602200:CDS |
| GCTGTCTACTCCACCACCTT+CGG | 0.479663 | 4_2:+45616016 | Msa0602200:CDS |
| ATCAATTACAGTCAATCAAG+TGG | 0.480334 | 4_2:+45617145 | Msa0602200:CDS |
| ATGAACACAGCTGCCAAACT+TGG | 0.480956 | 4_2:+45617119 | Msa0602200:CDS |
| GGTTGTACCAAATCAACCTT+CGG | 0.483656 | 4_2:-45615636 | None:intergenic |
| TGCACAGAGTACAGCAGGAC+TGG | 0.488505 | 4_2:+45615869 | Msa0602200:CDS |
| TATACTAGTAGTTGGAAAGC+AGG | 0.489183 | 4_2:+45618051 | Msa0602200:CDS |
| GACATCCTCACAGGCCTCAA+TGG | 0.490228 | 4_2:-45616113 | None:intergenic |
| GTCTCAATCTTGTGAAGCAA+AGG | 0.494453 | 4_2:-45616308 | None:intergenic |
| AGTCCTGCTGTACTCTGTGC+AGG | 0.494921 | 4_2:-45615867 | None:intergenic |
| GAAAGAATAAGTGAATCTGC+AGG | 0.497798 | 4_2:+45615990 | Msa0602200:CDS |
| CACTGCCACTAAACAGAACT+GGG | 0.499754 | 4_2:+45614174 | Msa0602200:five_prime_UTR |
| CCCGGCTGCGGTTTAGACTT+CGG | 0.501904 | 4_2:-45615678 | None:intergenic |
| TCTGGAAACCTATCCTTTGG+AGG | 0.502203 | 4_2:-45617974 | None:intergenic |
| TATGCAACAGTCCCCACAGC+AGG | 0.503169 | 4_2:+45617460 | Msa0602200:CDS |
| GAAGCAATCCATCTTCACTA+AGG | 0.505272 | 4_2:-45617247 | None:intergenic |
| TCAGCTCGAACACTGCTTTG+AGG | 0.506201 | 4_2:-45617581 | None:intergenic |
| CAAGTCCTTGGTCTAATAGG+AGG | 0.509692 | 4_2:+45615904 | Msa0602200:CDS |
| CCAGTCTTGAGTCTTATCAA+TGG | 0.510525 | 4_2:-45617210 | None:intergenic |
| ACTACGGAGATGTATTTCTC+TGG | 0.512249 | 4_2:-45617992 | None:intergenic |
| GATAACATCAGAGGAAGAGC+TGG | 0.515013 | 4_2:+45615944 | Msa0602200:CDS |
| GCTCCTGGATGCAGCACAGA+AGG | 0.515565 | 4_2:-45618025 | None:intergenic |
| AGTCCTTAGTTAAAGGGGAG+TGG | 0.516301 | 4_2:+45617543 | Msa0602200:CDS |
| ATTATGAGTATCTTGGTAGC+GGG | 0.516620 | 4_2:+45617777 | Msa0602200:CDS |
| GGAGCATGTATACTAGTAGT+TGG | 0.518646 | 4_2:+45618043 | Msa0602200:CDS |
| CTTGAAATCGGCTGATGAAG+TGG | 0.519992 | 4_2:-45615720 | None:intergenic |
| GAGTACAGCAGGACTGGAAT+CGG | 0.520516 | 4_2:+45615875 | Msa0602200:CDS |
| CTTGGGAGTCCTTCCTCCAA+AGG | 0.521528 | 4_2:+45617961 | Msa0602200:CDS |
| TCCACATGTAGCATCCACTT+TGG | 0.523122 | 4_2:-45617893 | None:intergenic |
| TGGAGGTGTTGTTACTCCTA+TGG | 0.525807 | 4_2:+45615536 | Msa0602200:CDS |
| CGACGACTAGGACTTGAAAT+CGG | 0.526183 | 4_2:-45615732 | None:intergenic |
| ACAGGATCGGCTAGTAACTC+TGG | 0.526790 | 4_2:+45616074 | Msa0602200:CDS |
| AGCAGAGAAGAAGGAGAAGA+GGG | 0.527210 | 4_2:-45614393 | None:intergenic |
| AAGCAGAGAAGAAGGAGAAG+AGG | 0.528309 | 4_2:-45614394 | None:intergenic |
| AGCCATGGTTTCGCTCGCTA+GGG | 0.528942 | 4_2:-45614261 | None:intergenic |
| GTTAAAGGGGAGTGGGTCAA+AGG | 0.528973 | 4_2:+45617551 | Msa0602200:CDS |
| TTGTTGGGTGTCGTCTGCAT+TGG | 0.529130 | 4_2:+45615462 | Msa0602200:CDS |
| GGCAATGATACACTGTCTAC+AGG | 0.530242 | 4_2:+45617167 | Msa0602200:CDS |
| GGTGGCTTCTTCAACGACTC+CGG | 0.530803 | 4_2:-45615657 | None:intergenic |
| ATACAAGAGCAAGTGAGAAT+CGG | 0.531779 | 4_2:-45617846 | None:intergenic |
| GAGTCCTTCCTCCAAAGGAT+AGG | 0.531914 | 4_2:+45617966 | Msa0602200:CDS |
| AGGCCTGTGAGGATGTCTCC+AGG | 0.532208 | 4_2:+45616119 | Msa0602200:CDS |
| CAAATTGAGCAGTGGCGTGA+TGG | 0.532927 | 4_2:+45616251 | Msa0602200:CDS |
| AAGATTAAAGTTGGGTATGG+AGG | 0.534394 | 4_2:+45618336 | Msa0602200:CDS |
| GCTGCATTCTACTCTTGTGC+AGG | 0.537134 | 4_2:+45617274 | Msa0602200:CDS |
| TGTGTCATAAGATTAAAGTT+GGG | 0.538533 | 4_2:+45618328 | Msa0602200:CDS |
| CCTTCCTCCACCTATGTCCA+TGG | 0.539185 | 4_2:+45616187 | Msa0602200:CDS |
| CTTATGACACAGAATCAAGA+TGG | 0.542280 | 4_2:-45618316 | None:intergenic |
| GTCCTTAGTTAAAGGGGAGT+GGG | 0.545653 | 4_2:+45617544 | Msa0602200:CDS |
| ATACTCATAATTCTTCAAGC+AGG | 0.545765 | 4_2:-45617765 | None:intergenic |
| GTTCTATTGGCAACTTGTCG+AGG | 0.547249 | 4_2:+45615799 | Msa0602200:CDS |
| ATTGGATGGTTGAAGACTGT+TGG | 0.548223 | 4_2:-45614357 | None:intergenic |
| ACTACTAGTATACATGCTCC+TGG | 0.550196 | 4_2:-45618040 | None:intergenic |
| AAACCAGGAACCGAAGGTGG+TGG | 0.552028 | 4_2:-45616026 | None:intergenic |
| ACTGGGTAGCACATATATCA+TGG | 0.553498 | 4_2:+45614191 | Msa0602200:five_prime_UTR |
| TTACATGATAACTTCAACTG+AGG | 0.553507 | 4_2:-45618587 | None:intergenic |
| TCACCTGCACAGAGTACAGC+AGG | 0.555844 | 4_2:+45615864 | Msa0602200:CDS |
| TGTGCAGGTGATACTACTCC+GGG | 0.556207 | 4_2:-45615852 | None:intergenic |
| ACCACCTTCTCCCTTCTTAG+GGG | 0.557390 | 4_2:-45616162 | None:intergenic |
| GTTGAAGACTGTTGGAGGAG+AGG | 0.560917 | 4_2:-45614349 | None:intergenic |
| AATGTCCGGCGTGATAATCT+GGG | 0.561914 | 4_2:+45618629 | Msa0602200:three_prime_UTR |
| TTAGAATTCGACGCAACCAT+AGG | 0.562026 | 4_2:-45615552 | None:intergenic |
| GGATGGTTGAAGACTGTTGG+AGG | 0.562252 | 4_2:-45614354 | None:intergenic |
| TCAATGGATGAACTTGTAGA+GGG | 0.564545 | 4_2:-45617194 | None:intergenic |
| CCACCTTCTCCCTTCTTAGG+GGG | 0.564768 | 4_2:-45616161 | None:intergenic |
| CATATTAGGTACAAACGAGT+TGG | 0.565530 | 4_2:-45617441 | None:intergenic |
| CCGAAGTCTAAACCGCAGCC+GGG | 0.565733 | 4_2:+45615678 | Msa0602200:CDS |
| TAGATTTCGAAACATAATGC+TGG | 0.566365 | 4_2:+45618757 | Msa0602200:three_prime_UTR |
| GTGGATGCAACGTCTTATGC+TGG | 0.567802 | 4_2:+45617911 | Msa0602200:CDS |
| ACTTCAGTCCTTAGTTAAAG+GGG | 0.568978 | 4_2:+45617538 | Msa0602200:CDS |
| ACCTATGTCCATGGAAGAAG+CGG | 0.569193 | 4_2:+45616196 | Msa0602200:CDS |
| ACCGCTTCTTCCATGGACAT+AGG | 0.570460 | 4_2:-45616197 | None:intergenic |
| AATTCAGAAGAACCCGGCTG+CGG | 0.572345 | 4_2:-45615690 | None:intergenic |
| TCACCATCAACACGACGACT+AGG | 0.572718 | 4_2:-45615744 | None:intergenic |
| AATTATGAGTATCTTGGTAG+CGG | 0.575034 | 4_2:+45617776 | Msa0602200:CDS |
| CTGTGCAGGTGATACTACTC+CGG | 0.575494 | 4_2:-45615853 | None:intergenic |
| AGTCGTCGTGTTGATGGTGA+TGG | 0.576247 | 4_2:+45615747 | Msa0602200:CDS |
| AACCCTAGCGAGCGAAACCA+TGG | 0.578481 | 4_2:+45614259 | Msa0602200:exon |
| GGAACCAAAGGACCCTGCTG+TGG | 0.581478 | 4_2:-45617473 | None:intergenic |
| CCCTAATACAGTTACAGGAT+CGG | 0.581559 | 4_2:+45616061 | Msa0602200:CDS |
| TGGGTATGGAGGTATCGTTA+GGG | 0.581693 | 4_2:+45618347 | Msa0602200:CDS |
| TCATGTCGAATGTTAGCGGA+AGG | 0.582981 | 4_2:-45618461 | None:intergenic |
| GAAACCTATCCTTTGGAGGA+AGG | 0.584282 | 4_2:-45617970 | None:intergenic |
| TCGACACAGTCCTGCATGAG+AGG | 0.588828 | 4_2:-45617494 | None:intergenic |
| GAGATGAGAGCGTGATTGGA+TGG | 0.588995 | 4_2:-45614371 | None:intergenic |
| TTTGAGGATAGACACCCAAA+TGG | 0.589541 | 4_2:-45616232 | None:intergenic |
| GCCGTCATGTCGAATGTTAG+CGG | 0.590582 | 4_2:-45618465 | None:intergenic |
| TTACGTAAAACTAGATATGG+TGG | 0.593722 | 4_2:+45615516 | Msa0602200:CDS |
| AAGTCCTTGGTCTAATAGGA+GGG | 0.595120 | 4_2:+45615905 | Msa0602200:CDS |
| GAACCAAAGGACCCTGCTGT+GGG | 0.596020 | 4_2:-45617472 | None:intergenic |
| AATGGCGAGAAAGGCGAAAG+CGG | 0.596342 | 4_2:-45614417 | None:intergenic |
| GGCGTGATGGACTCAGACAA+TGG | 0.596919 | 4_2:+45616264 | Msa0602200:CDS |
| AAGCAATCCATCTTCACTAA+GGG | 0.597444 | 4_2:-45617246 | None:intergenic |
| ATCGTTAGGGGTATGCATCT+AGG | 0.598489 | 4_2:+45618360 | Msa0602200:CDS |
| TCTTCCATGGACATAGGTGG+AGG | 0.601401 | 4_2:-45616191 | None:intergenic |
| TGGAGGTGAAGAAGAAGCCA+TGG | 0.603690 | 4_2:-45614276 | None:intergenic |
| TCTTCACTAAGGGTAACTGC+TGG | 0.607381 | 4_2:-45617236 | None:intergenic |
| CCAAAACCAGGAACCGAAGG+TGG | 0.610030 | 4_2:-45616029 | None:intergenic |
| CTCCTGGATGCAGCACAGAA+GGG | 0.610089 | 4_2:-45618024 | None:intergenic |
| GAGCCTGGAGACATCCTCAC+AGG | 0.610961 | 4_2:-45616122 | None:intergenic |
| CCATGGACATAGGTGGAGGA+AGG | 0.613851 | 4_2:-45616187 | None:intergenic |
| CTTTCCTAGAACATCCAAAG+TGG | 0.615098 | 4_2:+45617879 | Msa0602200:CDS |
| TGCTAATAAGATAACATCAG+AGG | 0.616471 | 4_2:+45615935 | Msa0602200:CDS |
| AGAAGGGACTGAAGACACTA+CGG | 0.616789 | 4_2:-45618008 | None:intergenic |
| TCCTGCATGAGAGGAACCAA+AGG | 0.618525 | 4_2:-45617485 | None:intergenic |
| AATCCAAAACCAGGAACCGA+AGG | 0.619450 | 4_2:-45616032 | None:intergenic |
| AATGGATGAACTTGTAGAGG+GGG | 0.620948 | 4_2:-45617192 | None:intergenic |
| GAAGGACTCCCAAGAATAAG+GGG | 0.621294 | 4_2:-45617952 | None:intergenic |
| ATGCAACAGTCCCCACAGCA+GGG | 0.630389 | 4_2:+45617461 | Msa0602200:CDS |
| CGTAAAACTAGATATGGTGG+AGG | 0.630602 | 4_2:+45615519 | Msa0602200:CDS |
| GCTTCTTCCATGGACATAGG+TGG | 0.632379 | 4_2:-45616194 | None:intergenic |
| ATACTAGTAGTTGGAAAGCA+GGG | 0.632922 | 4_2:+45618052 | Msa0602200:CDS |
| TCAATTACAGTCAATCAAGT+GGG | 0.636455 | 4_2:+45617146 | Msa0602200:CDS |
| AAAGAATAAGTGAATCTGCA+GGG | 0.638876 | 4_2:+45615991 | Msa0602200:CDS |
| CCATTGATAAGACTCAAGAC+TGG | 0.640774 | 4_2:+45617210 | Msa0602200:CDS |
| TTATCATGTAATGTTTCTGG+AGG | 0.641191 | 4_2:+45618599 | Msa0602200:three_prime_UTR |
| GGGCTCGCTAATCCAAAACC+AGG | 0.642580 | 4_2:-45616041 | None:intergenic |
| CGTCTGCATTGGAACTATGT+TGG | 0.643710 | 4_2:+45615473 | Msa0602200:CDS |
| ACAAGCAATTCAGAAGAACC+CGG | 0.644327 | 4_2:-45615696 | None:intergenic |
| TCCGCTAACATTCGACATGA+CGG | 0.647162 | 4_2:+45618464 | Msa0602200:three_prime_UTR |
| TACACTGTGCAAAGAATCCG+AGG | 0.647375 | 4_2:+45617605 | Msa0602200:CDS |
| GGCTGCGGTTTAGACTTCGG+TGG | 0.653097 | 4_2:-45615675 | None:intergenic |
| AAGAGCAAGTGAGAATCGGA+TGG | 0.656585 | 4_2:-45617842 | None:intergenic |
| CATGTCGAATGTTAGCGGAA+GGG | 0.666207 | 4_2:-45618460 | None:intergenic |
| CAATGGATGAACTTGTAGAG+GGG | 0.667361 | 4_2:-45617193 | None:intergenic |
| TTAAAAGACATACACCATTG+AGG | 0.667685 | 4_2:+45616099 | Msa0602200:CDS |
| AATTTGGATTTGGATTGTGG+AGG | 0.671538 | 4_2:-45614293 | None:intergenic |
| TCTATCCTCAAATTGAGCAG+TGG | 0.673697 | 4_2:+45616243 | Msa0602200:CDS |
| TTATGAGTATCTTGGTAGCG+GGG | 0.675109 | 4_2:+45617778 | Msa0602200:CDS |
| TCCAAAGTGGATGCTACATG+TGG | 0.676915 | 4_2:+45617892 | Msa0602200:CDS |
| GGGTATGGAGGTATCGTTAG+GGG | 0.678040 | 4_2:+45618348 | Msa0602200:CDS |
| AACCAAAGGACCCTGCTGTG+GGG | 0.678871 | 4_2:-45617471 | None:intergenic |
| TATCACGCCGGACATTGTGA+CGG | 0.680734 | 4_2:-45618622 | None:intergenic |
| GATGCCCTCCTATTAGACCA+AGG | 0.691355 | 4_2:-45615909 | None:intergenic |
| ATACACCATTGAGGCCTGTG+AGG | 0.694783 | 4_2:+45616108 | Msa0602200:CDS |
| AAGAACCCAGATTATCACGC+CGG | 0.699015 | 4_2:-45618634 | None:intergenic |
| ACTGTTGGAGGAGAGGACTG+CGG | 0.700076 | 4_2:-45614342 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATGAAATTAATTGAA+TGG | - | chr4_2:45614490-45614509 | None:intergenic | 10.0% |
| !!! | TTATTTTGTTTTTAAAAATG+TGG | + | chr4_2:45615374-45615393 | Msa0602200:intron | 10.0% |
| !!! | TATTTTGTTTTTAAAAATGT+GGG | + | chr4_2:45615375-45615394 | Msa0602200:intron | 10.0% |
| !! | ATTGTGACAATAATTTAATA+AGG | + | chr4_2:45614943-45614962 | Msa0602200:intron | 15.0% |
| !! | TTGTGACAATAATTTAATAA+GGG | + | chr4_2:45614944-45614963 | Msa0602200:intron | 15.0% |
| !!! | TATGTTTGAAGAATTATTTT+TGG | + | chr4_2:45616616-45616635 | Msa0602200:intron | 15.0% |
| !!! | AATACGAAAATTTTATTAGT+TGG | - | chr4_2:45617091-45617110 | None:intergenic | 15.0% |
| !!! | AATAAAATTTTCGTATTCAT+AGG | + | chr4_2:45617094-45617113 | Msa0602200:intron | 15.0% |
| !! | AAATTATAAGTACATAGAAT+AGG | - | chr4_2:45618233-45618252 | None:intergenic | 15.0% |
| !! | GTACTTATAATTTATTATCT+TGG | + | chr4_2:45618240-45618259 | Msa0602200:intron | 15.0% |
| !!! | TTGTTTTTTTAGTACAAATT+AGG | - | chr4_2:45618696-45618715 | None:intergenic | 15.0% |
| !!! | ACTTTAACTTGTTTTTGTTT+TGG | + | chr4_2:45614610-45614629 | Msa0602200:intron | 20.0% |
| !!! | CTTTAACTTGTTTTTGTTTT+GGG | + | chr4_2:45614611-45614630 | Msa0602200:intron | 20.0% |
| !!! | ATAAATGATTTTGACATGTT+TGG | + | chr4_2:45614661-45614680 | Msa0602200:intron | 20.0% |
| !! | ATTCTACTTTAGTTAGAAAT+TGG | + | chr4_2:45614721-45614740 | Msa0602200:intron | 20.0% |
| !! | CTGTTACACATTTAAAAAAA+AGG | - | chr4_2:45615334-45615353 | None:intergenic | 20.0% |
| !!! | TTTTTACGTAAAACTAGATA+TGG | + | chr4_2:45615513-45615532 | Msa0602200:CDS | 20.0% |
| !!! | TGGTCAAAGTAATATTTTTT+AGG | + | chr4_2:45616376-45616395 | Msa0602200:intron | 20.0% |
| !!! | GTAATATTTTTTAGGATACA+TGG | + | chr4_2:45616384-45616403 | Msa0602200:intron | 20.0% |
| !!! | ATATTTCATACTCTTCTTTT+TGG | - | chr4_2:45616760-45616779 | None:intergenic | 20.0% |
| !! | TTATGAATCTATGATATGAT+TGG | + | chr4_2:45616802-45616821 | Msa0602200:intron | 20.0% |
| !! | AATATGAATCAACATACATT+TGG | - | chr4_2:45617312-45617331 | None:intergenic | 20.0% |
| !! | ATTCATATTCATATGCATAT+TGG | + | chr4_2:45617323-45617342 | Msa0602200:intron | 20.0% |
| !! | ATGATAAAAAGAATAAGAAG+TGG | + | chr4_2:45617807-45617826 | Msa0602200:CDS | 20.0% |
| !! | ACAATATTGAAAGGTTTAAT+AGG | - | chr4_2:45618198-45618217 | None:intergenic | 20.0% |
| !!! | TGGTTTAAAACAATATTGAA+AGG | - | chr4_2:45618207-45618226 | None:intergenic | 20.0% |
| !!! | TTTCATGTTTTGTTGTTGTA+GGG | + | chr4_2:45614521-45614540 | Msa0602200:intron | 25.0% |
| !!! | TTAGAATTGATTTTGCATCT+AGG | + | chr4_2:45614694-45614713 | Msa0602200:intron | 25.0% |
| !! | ATGATTTTGTAGATTGATAG+TGG | - | chr4_2:45614876-45614895 | None:intergenic | 25.0% |
| ! | TCAACTAGAATCAATTATGT+AGG | + | chr4_2:45615091-45615110 | Msa0602200:intron | 25.0% |
| !!! | AAGCTGCTTTTATTTTTTCT+GGG | + | chr4_2:45615304-45615323 | Msa0602200:intron | 25.0% |
| ! | TGATTTATTGAACTTCAGAT+TGG | + | chr4_2:45615418-45615437 | Msa0602200:intron | 25.0% |
| ! | GATTTATTGAACTTCAGATT+GGG | + | chr4_2:45615419-45615438 | Msa0602200:intron | 25.0% |
| ! | CCATAAAACAAGAAATGATT+AGG | - | chr4_2:45616359-45616378 | None:intergenic | 25.0% |
| !!! | CCTAATCATTTCTTGTTTTA+TGG | + | chr4_2:45616356-45616375 | Msa0602200:intron | 25.0% |
| !! | TAGAGAATGAGTTTTACATT+TGG | + | chr4_2:45616653-45616672 | Msa0602200:intron | 25.0% |
| ! | TTACTAGGAAAAATTACTCA+AGG | + | chr4_2:45616719-45616738 | Msa0602200:intron | 25.0% |
| !!! | TTTACTGGTTTTCTTAGTTT+GGG | - | chr4_2:45616945-45616964 | None:intergenic | 25.0% |
| !!! | TTTTACTGGTTTTCTTAGTT+TGG | - | chr4_2:45616946-45616965 | None:intergenic | 25.0% |
| ! | AAGTTCTATGGTATTTATAG+AGG | + | chr4_2:45617017-45617036 | Msa0602200:intron | 25.0% |
| ! | TGTATCTAACTTGAACTATA+TGG | - | chr4_2:45617044-45617063 | None:intergenic | 25.0% |
| ! | TGTAATTGATATACCAAGTT+TGG | - | chr4_2:45617135-45617154 | None:intergenic | 25.0% |
| ! | TCAGCAAATATAATCAAACT+GGG | - | chr4_2:45617373-45617392 | None:intergenic | 25.0% |
| ! | ATCAGCAAATATAATCAAAC+TGG | - | chr4_2:45617374-45617393 | None:intergenic | 25.0% |
| ! | TGATGAATCTAATGACTAAT+AGG | - | chr4_2:45617657-45617676 | None:intergenic | 25.0% |
| !!! | AAGCTCTAAAAATTTAGACA+AGG | - | chr4_2:45617735-45617754 | None:intergenic | 25.0% |
| ! | TTGAAGAATTATGAGTATCT+TGG | + | chr4_2:45617770-45617789 | Msa0602200:CDS | 25.0% |
| ! | TTGGTTCATATAGTAACATT+GGG | - | chr4_2:45618150-45618169 | None:intergenic | 25.0% |
| ! | TAAGTACATAGAATAGGTAT+TGG | - | chr4_2:45618227-45618246 | None:intergenic | 25.0% |
| ! | TGTGTCATAAGATTAAAGTT+GGG | + | chr4_2:45618328-45618347 | Msa0602200:CDS | 25.0% |
| ! | AAGTTATCATGTAATGTTTC+TGG | + | chr4_2:45618596-45618615 | Msa0602200:three_prime_UTR | 25.0% |
| ! | TTTTGAATGTGAGTGATGAA+TGG | - | chr4_2:45614467-45614486 | None:intergenic | 30.0% |
| !!! | CTTTCATGTTTTGTTGTTGT+AGG | + | chr4_2:45614520-45614539 | Msa0602200:intron | 30.0% |
| !!! | TTTTGTTGTTGTAGGGAAAA+TGG | + | chr4_2:45614528-45614547 | Msa0602200:intron | 30.0% |
| !! | TTTGTTGTTGTAGGGAAAAT+GGG | + | chr4_2:45614529-45614548 | Msa0602200:intron | 30.0% |
| AACTTTACAAGCTGTATAAG+AGG | - | chr4_2:45614586-45614605 | None:intergenic | 30.0% | |
| ! | TCACAATAGAAGTGTATGTT+TGG | - | chr4_2:45614930-45614949 | None:intergenic | 30.0% |
| ! | AAGGTAAAGTGATTTGTGTT+AGG | + | chr4_2:45615007-45615026 | Msa0602200:intron | 30.0% |
| TTGTGTGTATAAACCAATTC+TGG | + | chr4_2:45615046-45615065 | Msa0602200:intron | 30.0% | |
| !! | GTATAAACCAATTCTGGAAT+CGG | + | chr4_2:45615052-45615071 | Msa0602200:intron | 30.0% |
| ! | TTCTAGTTGAAGCTAGAATT+TGG | - | chr4_2:45615081-45615100 | None:intergenic | 30.0% |
| !! | AAAATTGATTCGGACATGTT+TGG | - | chr4_2:45615142-45615161 | None:intergenic | 30.0% |
| ! | AAACATGTCCGAATCAATTT+TGG | + | chr4_2:45615141-45615160 | Msa0602200:intron | 30.0% |
| !!! | GAAGCTGCTTTTATTTTTTC+TGG | + | chr4_2:45615303-45615322 | Msa0602200:intron | 30.0% |
| ! | AAGACACTGCAAATTTTGTT+GGG | + | chr4_2:45615447-45615466 | Msa0602200:intron | 30.0% |
| TTACGTAAAACTAGATATGG+TGG | + | chr4_2:45615516-45615535 | Msa0602200:CDS | 30.0% | |
| ! | AAACATCAGTTAGAGCTTTT+AGG | + | chr4_2:45615606-45615625 | Msa0602200:CDS | 30.0% |
| TGCTAATAAGATAACATCAG+AGG | + | chr4_2:45615935-45615954 | Msa0602200:CDS | 30.0% | |
| AAAGAATAAGTGAATCTGCA+GGG | + | chr4_2:45615991-45616010 | Msa0602200:CDS | 30.0% | |
| TTAAAAGACATACACCATTG+AGG | + | chr4_2:45616099-45616118 | Msa0602200:CDS | 30.0% | |
| ! | ACACACTGTCAATATTTTCT+TGG | - | chr4_2:45616493-45616512 | None:intergenic | 30.0% |
| GTTCAAATTGAATTACTGCT+TGG | + | chr4_2:45616514-45616533 | Msa0602200:intron | 30.0% | |
| ! | CTCGTTCTTGTAATACTTTT+TGG | - | chr4_2:45616689-45616708 | None:intergenic | 30.0% |
| TTACAAGAACGAGACTTATT+TGG | + | chr4_2:45616696-45616715 | Msa0602200:intron | 30.0% | |
| AGGAAAAATTACTCAAGGTA+TGG | + | chr4_2:45616724-45616743 | Msa0602200:intron | 30.0% | |
| ! | ATCTATGATATGATTGGTCA+TGG | + | chr4_2:45616808-45616827 | Msa0602200:intron | 30.0% |
| ! | AACCAGTAAAAACCTCATTT+TGG | + | chr4_2:45616955-45616974 | Msa0602200:intron | 30.0% |
| ! | AACCAAAATGAGGTTTTTAC+TGG | - | chr4_2:45616960-45616979 | None:intergenic | 30.0% |
| TAGAACTTCAACCGTAATAA+TGG | - | chr4_2:45617005-45617024 | None:intergenic | 30.0% | |
| TTATTACGGTTGAAGTTCTA+TGG | + | chr4_2:45617005-45617024 | Msa0602200:intron | 30.0% | |
| ATCAATTACAGTCAATCAAG+TGG | + | chr4_2:45617145-45617164 | Msa0602200:CDS | 30.0% | |
| TCAATTACAGTCAATCAAGT+GGG | + | chr4_2:45617146-45617165 | Msa0602200:CDS | 30.0% | |
| !! | GGAGTTCATTTTTCTGATAT+TGG | + | chr4_2:45617691-45617710 | Msa0602200:intron | 30.0% |
| !!! | TCTGATATTGGTTTTAATGC+TGG | + | chr4_2:45617703-45617722 | Msa0602200:intron | 30.0% |
| !!! | AAATTTTTAGAGCTTGCTGA+AGG | + | chr4_2:45617740-45617759 | Msa0602200:intron | 30.0% |
| ATACTCATAATTCTTCAAGC+AGG | - | chr4_2:45617768-45617787 | None:intergenic | 30.0% | |
| AATTATGAGTATCTTGGTAG+CGG | + | chr4_2:45617776-45617795 | Msa0602200:CDS | 30.0% | |
| TGGTTCATATAGTAACATTG+GGG | - | chr4_2:45618149-45618168 | None:intergenic | 30.0% | |
| ! | GTTGGTTCATATAGTAACAT+TGG | - | chr4_2:45618151-45618170 | None:intergenic | 30.0% |
| GTTCATAGTAAATAGGTTGT+TGG | - | chr4_2:45618169-45618188 | None:intergenic | 30.0% | |
| TGAAAGGTTTAATAGGTTGT+CGG | - | chr4_2:45618191-45618210 | None:intergenic | 30.0% | |
| !!! | AGCTCTGAGATTTATTTTTC+AGG | + | chr4_2:45618272-45618291 | Msa0602200:intron | 30.0% |
| !!! | GCTCTGAGATTTATTTTTCA+GGG | + | chr4_2:45618273-45618292 | Msa0602200:intron | 30.0% |
| CTGTGTCATAAGATTAAAGT+TGG | + | chr4_2:45618327-45618346 | Msa0602200:CDS | 30.0% | |
| CATAAGATTAAAGTTGGGTA+TGG | + | chr4_2:45618333-45618352 | Msa0602200:CDS | 30.0% | |
| TTTAAGCATTCTACCTGTTA+TGG | + | chr4_2:45618392-45618411 | Msa0602200:CDS | 30.0% | |
| TTACATGATAACTTCAACTG+AGG | - | chr4_2:45618590-45618609 | None:intergenic | 30.0% | |
| !! | TTATCATGTAATGTTTCTGG+AGG | + | chr4_2:45618599-45618618 | Msa0602200:three_prime_UTR | 30.0% |
| !!! | GGTTTTTGAAATGAGGTTTG+AGG | - | chr4_2:45614243-45614262 | None:intergenic | 35.0% |
| AATTTGGATTTGGATTGTGG+AGG | - | chr4_2:45614296-45614315 | None:intergenic | 35.0% | |
| GAGAATTTGGATTTGGATTG+TGG | - | chr4_2:45614299-45614318 | None:intergenic | 35.0% | |
| GTAAACGGAGAATTTGGATT+TGG | - | chr4_2:45614306-45614325 | None:intergenic | 35.0% | |
| !! | GTTTTGGTAAACGGAGAATT+TGG | - | chr4_2:45614312-45614331 | None:intergenic | 35.0% |
| !! | GAGATTAGGGTTTTGGTAAA+CGG | - | chr4_2:45614321-45614340 | None:intergenic | 35.0% |
| AAGTGGTTACCTGAAGATAA+TGG | - | chr4_2:45614438-45614457 | None:intergenic | 35.0% | |
| GTGATGAATGGTGAAAAAAG+TGG | - | chr4_2:45614455-45614474 | None:intergenic | 35.0% | |
| !!! | AACTTGTTTTTGTTTTGGGC+TGG | + | chr4_2:45614615-45614634 | Msa0602200:intron | 35.0% |
| ! | TCTGACTTAAAGTGAGTTGA+AGG | + | chr4_2:45614988-45615007 | Msa0602200:intron | 35.0% |
| TAGAGTGGCCAAAATTGATT+CGG | - | chr4_2:45615152-45615171 | None:intergenic | 35.0% | |
| ! | CAAGACACTGCAAATTTTGT+TGG | + | chr4_2:45615446-45615465 | Msa0602200:intron | 35.0% |
| GTGATGGTTCGAATTTGAAT+AGG | + | chr4_2:45615763-45615782 | Msa0602200:CDS | 35.0% | |
| !! | AATTTGAATAGGAGTGCTTC+TGG | + | chr4_2:45615774-45615793 | Msa0602200:CDS | 35.0% |
| ! | TTTCAAGTCCTTGGTCTAAT+AGG | + | chr4_2:45615901-45615920 | Msa0602200:CDS | 35.0% |
| GAAAGAATAAGTGAATCTGC+AGG | + | chr4_2:45615990-45616009 | Msa0602200:CDS | 35.0% | |
| ! | GTTGAAGCTTTTGACCATTT+GGG | + | chr4_2:45616218-45616237 | Msa0602200:CDS | 35.0% |
| ACGAGACTTATTTGGTTACT+AGG | + | chr4_2:45616704-45616723 | Msa0602200:intron | 35.0% | |
| ! | GATATGATTGGTCATGGTAA+TGG | + | chr4_2:45616814-45616833 | Msa0602200:intron | 35.0% |
| ATGGTTAATACTACCCCAAA+AGG | + | chr4_2:45616833-45616852 | Msa0602200:intron | 35.0% | |
| ! | TTCTCAATGTTCAGCCTTTT+GGG | - | chr4_2:45616850-45616869 | None:intergenic | 35.0% |
| ! | TTTCTCAATGTTCAGCCTTT+TGG | - | chr4_2:45616851-45616870 | None:intergenic | 35.0% |
| ! | AAGAACCCAAAGTTAGGTTT+TGG | + | chr4_2:45616912-45616931 | Msa0602200:intron | 35.0% |
| GTCATCCAAAACCTAACTTT+GGG | - | chr4_2:45616920-45616939 | None:intergenic | 35.0% | |
| GATTGGAAACAACCAAAATG+AGG | - | chr4_2:45616970-45616989 | None:intergenic | 35.0% | |
| AAGCTTGTGCTCCATTATTA+CGG | + | chr4_2:45616991-45617010 | Msa0602200:intron | 35.0% | |
| TCAATGGATGAACTTGTAGA+GGG | - | chr4_2:45617197-45617216 | None:intergenic | 35.0% | |
| ATCAATGGATGAACTTGTAG+AGG | - | chr4_2:45617198-45617217 | None:intergenic | 35.0% | |
| AAGCAATCCATCTTCACTAA+GGG | - | chr4_2:45617249-45617268 | None:intergenic | 35.0% | |
| GATTTCTGATATTCTCCTAC+TGG | + | chr4_2:45617401-45617420 | Msa0602200:intron | 35.0% | |
| CATATTAGGTACAAACGAGT+TGG | - | chr4_2:45617444-45617463 | None:intergenic | 35.0% | |
| TAACTAAGGACTGAAGTCTT+TGG | - | chr4_2:45617535-45617554 | None:intergenic | 35.0% | |
| AGACTTCAGTCCTTAGTTAA+AGG | + | chr4_2:45617536-45617555 | Msa0602200:CDS | 35.0% | |
| GACTTCAGTCCTTAGTTAAA+GGG | + | chr4_2:45617537-45617556 | Msa0602200:CDS | 35.0% | |
| ACTTCAGTCCTTAGTTAAAG+GGG | + | chr4_2:45617538-45617557 | Msa0602200:CDS | 35.0% | |
| ! | ATTATGAGTATCTTGGTAGC+GGG | + | chr4_2:45617777-45617796 | Msa0602200:CDS | 35.0% |
| ATACAAGAGCAAGTGAGAAT+CGG | - | chr4_2:45617849-45617868 | None:intergenic | 35.0% | |
| TAGCAAAAACCCCTTATTCT+TGG | + | chr4_2:45617943-45617962 | Msa0602200:CDS | 35.0% | |
| AGCAAAAACCCCTTATTCTT+GGG | + | chr4_2:45617944-45617963 | Msa0602200:CDS | 35.0% | |
| TATACTAGTAGTTGGAAAGC+AGG | + | chr4_2:45618051-45618070 | Msa0602200:CDS | 35.0% | |
| ATACTAGTAGTTGGAAAGCA+GGG | + | chr4_2:45618052-45618071 | Msa0602200:CDS | 35.0% | |
| !! | GTTGTCGGTTCATAGTAAAT+AGG | - | chr4_2:45618176-45618195 | None:intergenic | 35.0% |
| CTTATGACACAGAATCAAGA+TGG | - | chr4_2:45618319-45618338 | None:intergenic | 35.0% | |
| AAGATTAAAGTTGGGTATGG+AGG | + | chr4_2:45618336-45618355 | Msa0602200:CDS | 35.0% | |
| ACTGGGTAGCACATATATCA+TGG | + | chr4_2:45614191-45614210 | Msa0602200:five_prime_UTR | 40.0% | |
| !!! | TCGCTAGGGTTTTTGAAATG+AGG | - | chr4_2:45614250-45614269 | None:intergenic | 40.0% |
| ATTGGATGGTTGAAGACTGT+TGG | - | chr4_2:45614360-45614379 | None:intergenic | 40.0% | |
| ! | TGGTTGCTTTCGAGTAGAAT+TGG | - | chr4_2:45615122-45615141 | None:intergenic | 40.0% |
| ! | GTTTGGTTACACTTCTAGAG+TGG | - | chr4_2:45615167-45615186 | None:intergenic | 40.0% |
| GTAACCAAACAAGCAGAAGT+TGG | + | chr4_2:45615177-45615196 | Msa0602200:intron | 40.0% | |
| CAAACCAACTTCTGCTTGTT+TGG | - | chr4_2:45615184-45615203 | None:intergenic | 40.0% | |
| !! | AGCAGAAGTTGGTTTGTGTT+TGG | + | chr4_2:45615188-45615207 | Msa0602200:intron | 40.0% |
| CGTAAAACTAGATATGGTGG+AGG | + | chr4_2:45615519-45615538 | Msa0602200:CDS | 40.0% | |
| TTAGAATTCGACGCAACCAT+AGG | - | chr4_2:45615555-45615574 | None:intergenic | 40.0% | |
| GGTTGTACCAAATCAACCTT+CGG | - | chr4_2:45615639-45615658 | None:intergenic | 40.0% | |
| !! | GAAGGTTGATTTGGTACAAC+CGG | + | chr4_2:45615638-45615657 | Msa0602200:CDS | 40.0% |
| ACAAGCAATTCAGAAGAACC+CGG | - | chr4_2:45615699-45615718 | None:intergenic | 40.0% | |
| AGATAAAAAGTCGCTGAACC+AGG | - | chr4_2:45615828-45615847 | None:intergenic | 40.0% | |
| ! | GCGACTTTTTATCTTTCTCC+CGG | + | chr4_2:45615834-45615853 | Msa0602200:CDS | 40.0% |
| ! | AATCGGTAGTTTCAAGTCCT+TGG | + | chr4_2:45615892-45615911 | Msa0602200:CDS | 40.0% |
| AAGTCCTTGGTCTAATAGGA+GGG | + | chr4_2:45615905-45615924 | Msa0602200:CDS | 40.0% | |
| CCGATCCTGTAACTGTATTA+GGG | - | chr4_2:45616064-45616083 | None:intergenic | 40.0% | |
| CCCTAATACAGTTACAGGAT+CGG | + | chr4_2:45616061-45616080 | Msa0602200:CDS | 40.0% | |
| ! | AGGGGGAGTCTTAAACTTTT+GGG | - | chr4_2:45616147-45616166 | None:intergenic | 40.0% |
| ! | TAGGGGGAGTCTTAAACTTT+TGG | - | chr4_2:45616148-45616167 | None:intergenic | 40.0% |
| ! | TTTAAGACTCCCCCTAAGAA+GGG | + | chr4_2:45616152-45616171 | Msa0602200:CDS | 40.0% |
| ! | GGTTGAAGCTTTTGACCATT+TGG | + | chr4_2:45616217-45616236 | Msa0602200:CDS | 40.0% |
| TTTGAGGATAGACACCCAAA+TGG | - | chr4_2:45616235-45616254 | None:intergenic | 40.0% | |
| TCTATCCTCAAATTGAGCAG+TGG | + | chr4_2:45616243-45616262 | Msa0602200:CDS | 40.0% | |
| GTCTCAATCTTGTGAAGCAA+AGG | - | chr4_2:45616311-45616330 | None:intergenic | 40.0% | |
| GATTGAGACAAGTCATGTTC+AGG | + | chr4_2:45616322-45616341 | Msa0602200:CDS | 40.0% | |
| ! | TCTCAATGTTCAGCCTTTTG+GGG | - | chr4_2:45616849-45616868 | None:intergenic | 40.0% |
| CTTGAATCTTCAGCTCACAA+AGG | + | chr4_2:45616885-45616904 | Msa0602200:intron | 40.0% | |
| GGCTTAAAGAACCCAAAGTT+AGG | + | chr4_2:45616906-45616925 | Msa0602200:intron | 40.0% | |
| GGTCATCCAAAACCTAACTT+TGG | - | chr4_2:45616921-45616940 | None:intergenic | 40.0% | |
| !!! | ACTGGTTTTCTTAGTTTGGG+TGG | - | chr4_2:45616942-45616961 | None:intergenic | 40.0% |
| ! | AATGGAGCACAAGCTTTGAT+TGG | - | chr4_2:45616987-45617006 | None:intergenic | 40.0% |
| AATGGATGAACTTGTAGAGG+GGG | - | chr4_2:45617195-45617214 | None:intergenic | 40.0% | |
| CAATGGATGAACTTGTAGAG+GGG | - | chr4_2:45617196-45617215 | None:intergenic | 40.0% | |
| ! | CCAGTCTTGAGTCTTATCAA+TGG | - | chr4_2:45617213-45617232 | None:intergenic | 40.0% |
| CCATTGATAAGACTCAAGAC+TGG | + | chr4_2:45617210-45617229 | Msa0602200:CDS | 40.0% | |
| GAAGCAATCCATCTTCACTA+AGG | - | chr4_2:45617250-45617269 | None:intergenic | 40.0% | |
| CATACATTTGGAAGCCTCTA+TGG | - | chr4_2:45617300-45617319 | None:intergenic | 40.0% | |
| ! | TTCATCAGATTTTCTGCAGC+AGG | + | chr4_2:45617670-45617689 | Msa0602200:intron | 40.0% |
| !! | TTATGAGTATCTTGGTAGCG+GGG | + | chr4_2:45617778-45617797 | Msa0602200:CDS | 40.0% |
| CTTTCCTAGAACATCCAAAG+TGG | + | chr4_2:45617879-45617898 | Msa0602200:CDS | 40.0% | |
| ! | TTCTCTGGAAACCTATCCTT+TGG | - | chr4_2:45617980-45617999 | None:intergenic | 40.0% |
| ACTACGGAGATGTATTTCTC+TGG | - | chr4_2:45617995-45618014 | None:intergenic | 40.0% | |
| ACTACTAGTATACATGCTCC+TGG | - | chr4_2:45618043-45618062 | None:intergenic | 40.0% | |
| GGAGCATGTATACTAGTAGT+TGG | + | chr4_2:45618043-45618062 | Msa0602200:CDS | 40.0% | |
| CAGTACAAGGCAAAAATTGG+GGG | - | chr4_2:45618079-45618098 | None:intergenic | 40.0% | |
| CCAGTACAAGGCAAAAATTG+GGG | - | chr4_2:45618080-45618099 | None:intergenic | 40.0% | |
| CCCAGTACAAGGCAAAAATT+GGG | - | chr4_2:45618081-45618100 | None:intergenic | 40.0% | |
| ! | CCCAATTTTTGCCTTGTACT+GGG | + | chr4_2:45618078-45618097 | Msa0602200:CDS | 40.0% |
| TCCCAGTACAAGGCAAAAAT+TGG | - | chr4_2:45618082-45618101 | None:intergenic | 40.0% | |
| TCAGATTCTGTCTCCATAAC+AGG | - | chr4_2:45618408-45618427 | None:intergenic | 40.0% | |
| CACTGCCACTAAACAGAACT+GGG | + | chr4_2:45614174-45614193 | Msa0602200:five_prime_UTR | 45.0% | |
| TGCTACCCAGTTCTGTTTAG+TGG | - | chr4_2:45614182-45614201 | None:intergenic | 45.0% | |
| AGCAGAGAAGAAGGAGAAGA+GGG | - | chr4_2:45614396-45614415 | None:intergenic | 45.0% | |
| AAGCAGAGAAGAAGGAGAAG+AGG | - | chr4_2:45614397-45614416 | None:intergenic | 45.0% | |
| ! | CCTGAAGATAATGGCGAGAA+AGG | - | chr4_2:45614429-45614448 | None:intergenic | 45.0% |
| CCTTTCTCGCCATTATCTTC+AGG | + | chr4_2:45614426-45614445 | Msa0602200:CDS | 45.0% | |
| ! | AGTGGCTAGAAGTGAGTTGA+AGG | - | chr4_2:45614858-45614877 | None:intergenic | 45.0% |
| TTGGCTTCCGATTCCAGAAT+TGG | - | chr4_2:45615062-45615081 | None:intergenic | 45.0% | |
| CGTCTGCATTGGAACTATGT+TGG | + | chr4_2:45615473-45615492 | Msa0602200:CDS | 45.0% | |
| !! | TGGAGGTGTTGTTACTCCTA+TGG | + | chr4_2:45615536-45615555 | Msa0602200:CDS | 45.0% |
| ! | AGTGAAGCCGAAGGTTGATT+TGG | + | chr4_2:45615629-45615648 | Msa0602200:CDS | 45.0% |
| CTTGAAATCGGCTGATGAAG+TGG | - | chr4_2:45615723-45615742 | None:intergenic | 45.0% | |
| CGACGACTAGGACTTGAAAT+CGG | - | chr4_2:45615735-45615754 | None:intergenic | 45.0% | |
| AGTGCTTCTGGTCGTTCTAT+TGG | + | chr4_2:45615786-45615805 | Msa0602200:CDS | 45.0% | |
| GTTCTATTGGCAACTTGTCG+AGG | + | chr4_2:45615799-45615818 | Msa0602200:CDS | 45.0% | |
| CAAGTCCTTGGTCTAATAGG+AGG | + | chr4_2:45615904-45615923 | Msa0602200:CDS | 45.0% | |
| GATAACATCAGAGGAAGAGC+TGG | + | chr4_2:45615944-45615963 | Msa0602200:CDS | 45.0% | |
| AATCCAAAACCAGGAACCGA+AGG | - | chr4_2:45616035-45616054 | None:intergenic | 45.0% | |
| GCCGATCCTGTAACTGTATT+AGG | - | chr4_2:45616065-45616084 | None:intergenic | 45.0% | |
| !! | GTCTTAAACTTTTGGGAGCC+TGG | - | chr4_2:45616140-45616159 | None:intergenic | 45.0% |
| ! | GTTTAAGACTCCCCCTAAGA+AGG | + | chr4_2:45616151-45616170 | Msa0602200:CDS | 45.0% |
| ACCTATGTCCATGGAAGAAG+CGG | + | chr4_2:45616196-45616215 | Msa0602200:CDS | 45.0% | |
| ATTTGTACCACACCCTTCCT+TGG | + | chr4_2:45616447-45616466 | Msa0602200:intron | 45.0% | |
| ! | ACATCCCTTTTGCCAAGGAA+GGG | - | chr4_2:45616462-45616481 | None:intergenic | 45.0% |
| ATGAACACAGCTGCCAAACT+TGG | + | chr4_2:45617119-45617138 | Msa0602200:CDS | 45.0% | |
| GGCAATGATACACTGTCTAC+AGG | + | chr4_2:45617167-45617186 | Msa0602200:CDS | 45.0% | |
| TCTTCACTAAGGGTAACTGC+TGG | - | chr4_2:45617239-45617258 | None:intergenic | 45.0% | |
| GCAGTTACCCTTAGTGAAGA+TGG | + | chr4_2:45617239-45617258 | Msa0602200:CDS | 45.0% | |
| GCATGCAAACATGAACCAGT+AGG | - | chr4_2:45617419-45617438 | None:intergenic | 45.0% | |
| TGTGGGGACTGTTGCATATT+AGG | - | chr4_2:45617458-45617477 | None:intergenic | 45.0% | |
| AGTCCTTAGTTAAAGGGGAG+TGG | + | chr4_2:45617543-45617562 | Msa0602200:CDS | 45.0% | |
| GTCCTTAGTTAAAGGGGAGT+GGG | + | chr4_2:45617544-45617563 | Msa0602200:CDS | 45.0% | |
| TACACTGTGCAAAGAATCCG+AGG | + | chr4_2:45617605-45617624 | Msa0602200:CDS | 45.0% | |
| AAGAGCAAGTGAGAATCGGA+TGG | - | chr4_2:45617845-45617864 | None:intergenic | 45.0% | |
| GCATCCACTTTGGATGTTCT+AGG | - | chr4_2:45617886-45617905 | None:intergenic | 45.0% | |
| TCCAAAGTGGATGCTACATG+TGG | + | chr4_2:45617892-45617911 | Msa0602200:CDS | 45.0% | |
| TCCACATGTAGCATCCACTT+TGG | - | chr4_2:45617896-45617915 | None:intergenic | 45.0% | |
| GAAGGACTCCCAAGAATAAG+GGG | - | chr4_2:45617955-45617974 | None:intergenic | 45.0% | |
| GGAAGGACTCCCAAGAATAA+GGG | - | chr4_2:45617956-45617975 | None:intergenic | 45.0% | |
| AGGAAGGACTCCCAAGAATA+AGG | - | chr4_2:45617957-45617976 | None:intergenic | 45.0% | |
| ! | GAAACCTATCCTTTGGAGGA+AGG | - | chr4_2:45617973-45617992 | None:intergenic | 45.0% |
| TCTGGAAACCTATCCTTTGG+AGG | - | chr4_2:45617977-45617996 | None:intergenic | 45.0% | |
| AGAAGGGACTGAAGACACTA+CGG | - | chr4_2:45618011-45618030 | None:intergenic | 45.0% | |
| ! | CCCCAATTTTTGCCTTGTAC+TGG | + | chr4_2:45618077-45618096 | Msa0602200:CDS | 45.0% |
| CAGCTTCTTATCCCAGTACA+AGG | - | chr4_2:45618092-45618111 | None:intergenic | 45.0% | |
| GAAGCTGCAACTTTCTCTTC+AGG | + | chr4_2:45618105-45618124 | Msa0602200:CDS | 45.0% | |
| CTGCAACTTTCTCTTCAGGT+GGG | + | chr4_2:45618109-45618128 | Msa0602200:intron | 45.0% | |
| TAGTAACATTGGGGCTACAG+AGG | - | chr4_2:45618140-45618159 | None:intergenic | 45.0% | |
| TTCAGGGAAGAACAGCACTT+TGG | + | chr4_2:45618289-45618308 | Msa0602200:intron | 45.0% | |
| TCAGGGAAGAACAGCACTTT+GGG | + | chr4_2:45618290-45618309 | Msa0602200:intron | 45.0% | |
| !! | TTGGGTATGGAGGTATCGTT+AGG | + | chr4_2:45618346-45618365 | Msa0602200:CDS | 45.0% |
| !! | TGGGTATGGAGGTATCGTTA+GGG | + | chr4_2:45618347-45618366 | Msa0602200:CDS | 45.0% |
| ! | ATCGTTAGGGGTATGCATCT+AGG | + | chr4_2:45618360-45618379 | Msa0602200:CDS | 45.0% |
| CATGTCGAATGTTAGCGGAA+GGG | - | chr4_2:45618463-45618482 | None:intergenic | 45.0% | |
| TCATGTCGAATGTTAGCGGA+AGG | - | chr4_2:45618464-45618483 | None:intergenic | 45.0% | |
| TCCGCTAACATTCGACATGA+CGG | + | chr4_2:45618464-45618483 | Msa0602200:three_prime_UTR | 45.0% | |
| AATGTCCGGCGTGATAATCT+GGG | + | chr4_2:45618629-45618648 | Msa0602200:three_prime_UTR | 45.0% | |
| AAGAACCCAGATTATCACGC+CGG | - | chr4_2:45618637-45618656 | None:intergenic | 45.0% | |
| GCACTGCCACTAAACAGAAC+TGG | + | chr4_2:45614173-45614192 | Msa0602200:five_prime_UTR | 50.0% | |
| TGGAGGTGAAGAAGAAGCCA+TGG | - | chr4_2:45614279-45614298 | None:intergenic | 50.0% | |
| ! | CTGCGGAGAGATTAGGGTTT+TGG | - | chr4_2:45614328-45614347 | None:intergenic | 50.0% |
| AGAGGACTGCGGAGAGATTA+GGG | - | chr4_2:45614334-45614353 | None:intergenic | 50.0% | |
| GTTGAAGACTGTTGGAGGAG+AGG | - | chr4_2:45614352-45614371 | None:intergenic | 50.0% | |
| GGATGGTTGAAGACTGTTGG+AGG | - | chr4_2:45614357-45614376 | None:intergenic | 50.0% | |
| ! | GAGATGAGAGCGTGATTGGA+TGG | - | chr4_2:45614374-45614393 | None:intergenic | 50.0% |
| GAAAGCGGAAGCAGAGAAGA+AGG | - | chr4_2:45614405-45614424 | None:intergenic | 50.0% | |
| AATGGCGAGAAAGGCGAAAG+CGG | - | chr4_2:45614420-45614439 | None:intergenic | 50.0% | |
| ! | TTGTTGGGTGTCGTCTGCAT+TGG | + | chr4_2:45615462-45615481 | Msa0602200:CDS | 50.0% |
| !! | GCTTTTAGGAGTGAAGCCGA+AGG | + | chr4_2:45615620-45615639 | Msa0602200:CDS | 50.0% |
| AATTCAGAAGAACCCGGCTG+CGG | - | chr4_2:45615693-45615712 | None:intergenic | 50.0% | |
| AGTCCTAGTCGTCGTGTTGA+TGG | + | chr4_2:45615741-45615760 | Msa0602200:CDS | 50.0% | |
| TCACCATCAACACGACGACT+AGG | - | chr4_2:45615747-45615766 | None:intergenic | 50.0% | |
| !! | AGTCGTCGTGTTGATGGTGA+TGG | + | chr4_2:45615747-45615766 | Msa0602200:CDS | 50.0% |
| TGTGCAGGTGATACTACTCC+GGG | - | chr4_2:45615855-45615874 | None:intergenic | 50.0% | |
| CTGTGCAGGTGATACTACTC+CGG | - | chr4_2:45615856-45615875 | None:intergenic | 50.0% | |
| GAGTACAGCAGGACTGGAAT+CGG | + | chr4_2:45615875-45615894 | Msa0602200:CDS | 50.0% | |
| GATGCCCTCCTATTAGACCA+AGG | - | chr4_2:45615912-45615931 | None:intergenic | 50.0% | |
| GCGAGCCCTAATACAGTTAC+AGG | + | chr4_2:45616056-45616075 | Msa0602200:CDS | 50.0% | |
| ACAGGATCGGCTAGTAACTC+TGG | + | chr4_2:45616074-45616093 | Msa0602200:CDS | 50.0% | |
| ATACACCATTGAGGCCTGTG+AGG | + | chr4_2:45616108-45616127 | Msa0602200:CDS | 50.0% | |
| ACCACCTTCTCCCTTCTTAG+GGG | - | chr4_2:45616165-45616184 | None:intergenic | 50.0% | |
| CACCACCTTCTCCCTTCTTA+GGG | - | chr4_2:45616166-45616185 | None:intergenic | 50.0% | |
| TCACCACCTTCTCCCTTCTT+AGG | - | chr4_2:45616167-45616186 | None:intergenic | 50.0% | |
| TCTTCCATGGACATAGGTGG+AGG | - | chr4_2:45616194-45616213 | None:intergenic | 50.0% | |
| GCTTCTTCCATGGACATAGG+TGG | - | chr4_2:45616197-45616216 | None:intergenic | 50.0% | |
| ACCGCTTCTTCCATGGACAT+AGG | - | chr4_2:45616200-45616219 | None:intergenic | 50.0% | |
| AGCTTCAACCGCTTCTTCCA+TGG | - | chr4_2:45616207-45616226 | None:intergenic | 50.0% | |
| TCACGCCACTGCTCAATTTG+AGG | - | chr4_2:45616251-45616270 | None:intergenic | 50.0% | |
| CAAATTGAGCAGTGGCGTGA+TGG | + | chr4_2:45616251-45616270 | Msa0602200:CDS | 50.0% | |
| CACACCCTTCCTTGGCAAAA+GGG | + | chr4_2:45616455-45616474 | Msa0602200:intron | 50.0% | |
| ! | GACATCCCTTTTGCCAAGGA+AGG | - | chr4_2:45616463-45616482 | None:intergenic | 50.0% |
| GCTGCATTCTACTCTTGTGC+AGG | + | chr4_2:45617274-45617293 | Msa0602200:CDS | 50.0% | |
| TACTCTTGTGCAGGCCATAG+AGG | + | chr4_2:45617283-45617302 | Msa0602200:CDS | 50.0% | |
| ! | TCCTTTGGTTCCTCTCATGC+AGG | + | chr4_2:45617484-45617503 | Msa0602200:CDS | 50.0% |
| TCCTGCATGAGAGGAACCAA+AGG | - | chr4_2:45617488-45617507 | None:intergenic | 50.0% | |
| GACCCACTCCCCTTTAACTA+AGG | - | chr4_2:45617549-45617568 | None:intergenic | 50.0% | |
| GTTAAAGGGGAGTGGGTCAA+AGG | + | chr4_2:45617551-45617570 | Msa0602200:CDS | 50.0% | |
| TCAGCTCGAACACTGCTTTG+AGG | - | chr4_2:45617584-45617603 | None:intergenic | 50.0% | |
| CTGTGCAAAGAATCCGAGGT+AGG | + | chr4_2:45617609-45617628 | Msa0602200:intron | 50.0% | |
| CCATGATTACGTGCCTACCT+CGG | - | chr4_2:45617625-45617644 | None:intergenic | 50.0% | |
| GTGGATGCAACGTCTTATGC+TGG | + | chr4_2:45617911-45617930 | Msa0602200:CDS | 50.0% | |
| GAGTCCTTCCTCCAAAGGAT+AGG | + | chr4_2:45617966-45617985 | Msa0602200:CDS | 50.0% | |
| GCTGCAACTTTCTCTTCAGG+TGG | + | chr4_2:45618108-45618127 | Msa0602200:intron | 50.0% | |
| !! | GGGTATGGAGGTATCGTTAG+GGG | + | chr4_2:45618348-45618367 | Msa0602200:CDS | 50.0% |
| GCCGTCATGTCGAATGTTAG+CGG | - | chr4_2:45618468-45618487 | None:intergenic | 50.0% | |
| TATCACGCCGGACATTGTGA+CGG | - | chr4_2:45618625-45618644 | None:intergenic | 50.0% | |
| CAATGTCCGGCGTGATAATC+TGG | + | chr4_2:45618628-45618647 | Msa0602200:three_prime_UTR | 50.0% | |
| AACCCTAGCGAGCGAAACCA+TGG | + | chr4_2:45614259-45614278 | Msa0602200:exon | 55.0% | |
| AGCCATGGTTTCGCTCGCTA+GGG | - | chr4_2:45614264-45614283 | None:intergenic | 55.0% | |
| AAGCCATGGTTTCGCTCGCT+AGG | - | chr4_2:45614265-45614284 | None:intergenic | 55.0% | |
| GAGAGGACTGCGGAGAGATT+AGG | - | chr4_2:45614335-45614354 | None:intergenic | 55.0% | |
| ACTGTTGGAGGAGAGGACTG+CGG | - | chr4_2:45614345-45614364 | None:intergenic | 55.0% | |
| ! | GAGGGAGATGAGAGCGTGAT+TGG | - | chr4_2:45614378-45614397 | None:intergenic | 55.0% |
| GGTGGCTTCTTCAACGACTC+CGG | - | chr4_2:45615660-45615679 | None:intergenic | 55.0% | |
| ACCGAAGTCTAAACCGCAGC+CGG | + | chr4_2:45615677-45615696 | Msa0602200:CDS | 55.0% | |
| TCACCTGCACAGAGTACAGC+AGG | + | chr4_2:45615864-45615883 | Msa0602200:CDS | 55.0% | |
| AGTCCTGCTGTACTCTGTGC+AGG | - | chr4_2:45615870-45615889 | None:intergenic | 55.0% | |
| TGCACAGAGTACAGCAGGAC+TGG | + | chr4_2:45615869-45615888 | Msa0602200:CDS | 55.0% | |
| GCTGTCTACTCCACCACCTT+CGG | + | chr4_2:45616016-45616035 | Msa0602200:CDS | 55.0% | |
| AAACCAGGAACCGAAGGTGG+TGG | - | chr4_2:45616029-45616048 | None:intergenic | 55.0% | |
| CCAAAACCAGGAACCGAAGG+TGG | - | chr4_2:45616032-45616051 | None:intergenic | 55.0% | |
| ! | CCACCTTCGGTTCCTGGTTT+TGG | + | chr4_2:45616029-45616048 | Msa0602200:CDS | 55.0% |
| GGGCTCGCTAATCCAAAACC+AGG | - | chr4_2:45616044-45616063 | None:intergenic | 55.0% | |
| GACATCCTCACAGGCCTCAA+TGG | - | chr4_2:45616116-45616135 | None:intergenic | 55.0% | |
| ACTCCCCCTAAGAAGGGAGA+AGG | + | chr4_2:45616158-45616177 | Msa0602200:CDS | 55.0% | |
| CCACCTTCTCCCTTCTTAGG+GGG | - | chr4_2:45616164-45616183 | None:intergenic | 55.0% | |
| CCATGGACATAGGTGGAGGA+AGG | - | chr4_2:45616190-45616209 | None:intergenic | 55.0% | |
| CCTTCCTCCACCTATGTCCA+TGG | + | chr4_2:45616187-45616206 | Msa0602200:CDS | 55.0% | |
| !! | GGCGTGATGGACTCAGACAA+TGG | + | chr4_2:45616264-45616283 | Msa0602200:CDS | 55.0% |
| ! | CCTTTTGCCAAGGAAGGGTG+TGG | - | chr4_2:45616457-45616476 | None:intergenic | 55.0% |
| CCACACCCTTCCTTGGCAAA+AGG | + | chr4_2:45616454-45616473 | Msa0602200:intron | 55.0% | |
| ! | GCTCGACATCCCTTTTGCCA+AGG | - | chr4_2:45616467-45616486 | None:intergenic | 55.0% |
| TATGCAACAGTCCCCACAGC+AGG | + | chr4_2:45617460-45617479 | Msa0602200:CDS | 55.0% | |
| ATGCAACAGTCCCCACAGCA+GGG | + | chr4_2:45617461-45617480 | Msa0602200:CDS | 55.0% | |
| AACCAAAGGACCCTGCTGTG+GGG | - | chr4_2:45617474-45617493 | None:intergenic | 55.0% | |
| GAACCAAAGGACCCTGCTGT+GGG | - | chr4_2:45617475-45617494 | None:intergenic | 55.0% | |
| TCGACACAGTCCTGCATGAG+AGG | - | chr4_2:45617497-45617516 | None:intergenic | 55.0% | |
| CCGAGGTAGGCACGTAATCA+TGG | + | chr4_2:45617622-45617641 | Msa0602200:intron | 55.0% | |
| CTTGGGAGTCCTTCCTCCAA+AGG | + | chr4_2:45617961-45617980 | Msa0602200:CDS | 55.0% | |
| CTCCTGGATGCAGCACAGAA+GGG | - | chr4_2:45618027-45618046 | None:intergenic | 55.0% | |
| GGCTGCGGTTTAGACTTCGG+TGG | - | chr4_2:45615678-45615697 | None:intergenic | 60.0% | |
| CCCGGCTGCGGTTTAGACTT+CGG | - | chr4_2:45615681-45615700 | None:intergenic | 60.0% | |
| CCGAAGTCTAAACCGCAGCC+GGG | + | chr4_2:45615678-45615697 | Msa0602200:CDS | 60.0% | |
| ACTCCACCACCTTCGGTTCC+TGG | + | chr4_2:45616023-45616042 | Msa0602200:CDS | 60.0% | |
| AGGCCTGTGAGGATGTCTCC+AGG | + | chr4_2:45616119-45616138 | Msa0602200:CDS | 60.0% | |
| GAGCCTGGAGACATCCTCAC+AGG | - | chr4_2:45616125-45616144 | None:intergenic | 60.0% | |
| CCCCCTAAGAAGGGAGAAGG+TGG | + | chr4_2:45616161-45616180 | Msa0602200:CDS | 60.0% | |
| GGAACCAAAGGACCCTGCTG+TGG | - | chr4_2:45617476-45617495 | None:intergenic | 60.0% | |
| GTCCCTTCTGTGCTGCATCC+AGG | + | chr4_2:45618022-45618041 | Msa0602200:CDS | 60.0% | |
| GCTCCTGGATGCAGCACAGA+AGG | - | chr4_2:45618028-45618047 | None:intergenic | 60.0% | |
| CTGGAGGCCGTCACAATGTC+CGG | + | chr4_2:45618615-45618634 | Msa0602200:three_prime_UTR | 60.0% | |
| GGCAACTTGTCGAGGTCGCC+TGG | + | chr4_2:45615807-45615826 | Msa0602200:CDS | 65.0% | |
| GTCCCCACAGCAGGGTCCTT+TGG | + | chr4_2:45617469-45617488 | Msa0602200:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 45614168 | 45618779 | 45614168 | ID=Msa0602200;Name=Msa0602200 |
| chr4_2 | mRNA | 45614168 | 45618779 | 45614168 | ID=Msa0602200-mRNA-1;Parent=Msa0602200;Name=Msa0602200-mRNA-1;_AED=0.06;_eAED=0.06;_QI=110|0.83|0.71|1|1|1|7|345|675 |
| chr4_2 | exon | 45614168 | 45614447 | 45614168 | ID=Msa0602200-mRNA-1:exon:10216;Parent=Msa0602200-mRNA-1 |
| chr4_2 | exon | 45614542 | 45614602 | 45614542 | ID=Msa0602200-mRNA-1:exon:10217;Parent=Msa0602200-mRNA-1 |
| chr4_2 | exon | 45615450 | 45616343 | 45615450 | ID=Msa0602200-mRNA-1:exon:10218;Parent=Msa0602200-mRNA-1 |
| chr4_2 | exon | 45617116 | 45617314 | 45617116 | ID=Msa0602200-mRNA-1:exon:10219;Parent=Msa0602200-mRNA-1 |
| chr4_2 | exon | 45617441 | 45617626 | 45617441 | ID=Msa0602200-mRNA-1:exon:10220;Parent=Msa0602200-mRNA-1 |
| chr4_2 | exon | 45617750 | 45618126 | 45617750 | ID=Msa0602200-mRNA-1:exon:10221;Parent=Msa0602200-mRNA-1 |
| chr4_2 | exon | 45618294 | 45618779 | 45618294 | ID=Msa0602200-mRNA-1:exon:10222;Parent=Msa0602200-mRNA-1 |
| chr4_2 | five_prime_UTR | 45614168 | 45614277 | 45614168 | ID=Msa0602200-mRNA-1:five_prime_utr;Parent=Msa0602200-mRNA-1 |
| chr4_2 | CDS | 45614278 | 45614447 | 45614278 | ID=Msa0602200-mRNA-1:cds;Parent=Msa0602200-mRNA-1 |
| chr4_2 | CDS | 45614542 | 45614602 | 45614542 | ID=Msa0602200-mRNA-1:cds;Parent=Msa0602200-mRNA-1 |
| chr4_2 | CDS | 45615450 | 45616343 | 45615450 | ID=Msa0602200-mRNA-1:cds;Parent=Msa0602200-mRNA-1 |
| chr4_2 | CDS | 45617116 | 45617314 | 45617116 | ID=Msa0602200-mRNA-1:cds;Parent=Msa0602200-mRNA-1 |
| chr4_2 | CDS | 45617441 | 45617626 | 45617441 | ID=Msa0602200-mRNA-1:cds;Parent=Msa0602200-mRNA-1 |
| chr4_2 | CDS | 45617750 | 45618126 | 45617750 | ID=Msa0602200-mRNA-1:cds;Parent=Msa0602200-mRNA-1 |
| chr4_2 | CDS | 45618294 | 45618434 | 45618294 | ID=Msa0602200-mRNA-1:cds;Parent=Msa0602200-mRNA-1 |
| chr4_2 | three_prime_UTR | 45618435 | 45618779 | 45618435 | ID=Msa0602200-mRNA-1:three_prime_utr;Parent=Msa0602200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
