Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683050 | XP_003606453.1 | 96.603 | 677 | 20 | 1 | 2 | 675 | 3 | 679 | 0.0 | 1333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683050 | sp|Q6GPP7|TM209_XENLA | 22.273 | 220 | 129 | 5 | 465 | 669 | 366 | 558 | 8.36e-11 | 68.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683050 | G7JQG0 | 96.603 | 677 | 20 | 1 | 2 | 675 | 3 | 679 | 0.0 | 1333 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0643510 | Msa0683050 | 0.905843 | 2.795673e-80 | -8.615850e-47 |
| Msa0682980 | Msa0683050 | 0.981640 | 4.399558e-153 | -8.615850e-47 |
| Msa0683050 | Msa1321200 | 0.802948 | 4.403835e-49 | -8.615850e-47 |
| Msa0602200 | Msa0683050 | 0.996825 | 9.157523e-233 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683050 | MtrunA17_Chr4g0029691 | 96.603 | 677 | 20 | 1 | 2 | 675 | 3 | 679 | 0.0 | 1333 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683050 | AT1G07970.1 | 55.942 | 690 | 274 | 13 | 4 | 675 | 16 | 693 | 0.0 | 746 |
Find 201 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCTTCGGTTCCTGGTTT+TGG | 0.147160 | 4_4:+45398122 | Msa0683050:CDS |
| AAGTTATCATGTAATGTTTC+TGG | 0.165870 | 4_4:+45400689 | Msa0683050:three_prime_UTR |
| GCCGATCCTGTAACTGTATT+AGG | 0.190566 | 4_4:-45398155 | None:intergenic |
| TCACCACCTTCTCCCTTCTT+AGG | 0.211557 | 4_4:-45398257 | None:intergenic |
| CAATGTCCGGCGTGATAATC+TGG | 0.225087 | 4_4:+45400721 | Msa0683050:three_prime_UTR |
| AGACTTCAGTCCTTAGTTAA+AGG | 0.240452 | 4_4:+45399629 | Msa0683050:CDS |
| CTGCGGAGAGATTAGGGTTT+TGG | 0.242837 | 4_4:-45396418 | None:intergenic |
| ACTCCACCACCTTCGGTTCC+TGG | 0.286526 | 4_4:+45398116 | Msa0683050:CDS |
| AGGAAGGACTCCCAAGAATA+AGG | 0.295101 | 4_4:-45400047 | None:intergenic |
| GAGGGAGATGAGAGCGTGAT+TGG | 0.297125 | 4_4:-45396468 | None:intergenic |
| CATACATTTGGAAGCCTCTA+TGG | 0.297607 | 4_4:-45399390 | None:intergenic |
| TGTGGGGACTGTTGCATATT+AGG | 0.300222 | 4_4:-45399548 | None:intergenic |
| TTTAAGCATTCTACCTGTTA+TGG | 0.304026 | 4_4:+45400485 | Msa0683050:CDS |
| CACCACCTTCTCCCTTCTTA+GGG | 0.313156 | 4_4:-45398256 | None:intergenic |
| TTTCAAGTCCTTGGTCTAAT+AGG | 0.318049 | 4_4:+45397994 | Msa0683050:CDS |
| TGTAATTGATATACCAAGTT+TGG | 0.323780 | 4_4:-45399225 | None:intergenic |
| TTCTCTGGAAACCTATCCTT+TGG | 0.330000 | 4_4:-45400070 | None:intergenic |
| AGAGGACTGCGGAGAGATTA+GGG | 0.332088 | 4_4:-45396424 | None:intergenic |
| GTAAACGGAGAATTTGGATT+TGG | 0.333710 | 4_4:-45396396 | None:intergenic |
| GAGAGGACTGCGGAGAGATT+AGG | 0.336154 | 4_4:-45396425 | None:intergenic |
| GCATCCACTTTGGATGTTCT+AGG | 0.342075 | 4_4:-45399976 | None:intergenic |
| TGCTACCCAGTTCTGTTTAG+TGG | 0.348975 | 4_4:-45396272 | None:intergenic |
| GACTTCAGTCCTTAGTTAAA+GGG | 0.360236 | 4_4:+45399630 | Msa0683050:CDS |
| TCAGGGAAGAACAGCACTTT+GGG | 0.360957 | 4_4:+45400383 | Msa0683050:intron |
| GCGAGCCCTAATACAGTTAC+AGG | 0.361786 | 4_4:+45398149 | Msa0683050:CDS |
| AATTTGAATAGGAGTGCTTC+TGG | 0.363589 | 4_4:+45397867 | Msa0683050:CDS |
| TAACTAAGGACTGAAGTCTT+TGG | 0.365536 | 4_4:-45399625 | None:intergenic |
| TCAGATTCTGTCTCCATAAC+AGG | 0.368488 | 4_4:-45400498 | None:intergenic |
| GTCCCCACAGCAGGGTCCTT+TGG | 0.372286 | 4_4:+45399562 | Msa0683050:CDS |
| CCTTTCTCGCCATTATCTTC+AGG | 0.376921 | 4_4:+45396519 | Msa0683050:CDS |
| GACCCACTCCCCTTTAACTA+AGG | 0.377004 | 4_4:-45399639 | None:intergenic |
| GAAGCTGCAACTTTCTCTTC+AGG | 0.378961 | 4_4:+45400198 | Msa0683050:CDS |
| GAGAATTTGGATTTGGATTG+TGG | 0.382023 | 4_4:-45396389 | None:intergenic |
| CCGATCCTGTAACTGTATTA+GGG | 0.387249 | 4_4:-45398154 | None:intergenic |
| GATTGAGACAAGTCATGTTC+AGG | 0.391265 | 4_4:+45398415 | Msa0683050:CDS |
| AGTGCTTCTGGTCGTTCTAT+TGG | 0.391650 | 4_4:+45397879 | Msa0683050:CDS |
| AGTGAAGCCGAAGGTTGATT+TGG | 0.392715 | 4_4:+45397722 | Msa0683050:CDS |
| CTGTGTCATAAGATTAAAGT+TGG | 0.400152 | 4_4:+45400420 | Msa0683050:CDS |
| AGTCCTAGTCGTCGTGTTGA+TGG | 0.401203 | 4_4:+45397834 | Msa0683050:CDS |
| GCACTGCCACTAAACAGAAC+TGG | 0.403028 | 4_4:+45396266 | Msa0683050:five_prime_UTR |
| GGAAGGACTCCCAAGAATAA+GGG | 0.409561 | 4_4:-45400046 | None:intergenic |
| GTGATGGTTCGAATTTGAAT+AGG | 0.413755 | 4_4:+45397856 | Msa0683050:CDS |
| TTGAAGAATTATGAGTATCT+TGG | 0.415652 | 4_4:+45399863 | Msa0683050:CDS |
| TTTGTTGTTGTAGGGAAAAT+GGG | 0.424575 | 4_4:+45396622 | Msa0683050:intron |
| GAAAGCGGAAGCAGAGAAGA+AGG | 0.431888 | 4_4:-45396495 | None:intergenic |
| GTCCCTTCTGTGCTGCATCC+AGG | 0.432320 | 4_4:+45400115 | Msa0683050:CDS |
| TCACGCCACTGCTCAATTTG+AGG | 0.434711 | 4_4:-45398341 | None:intergenic |
| GCAGTTACCCTTAGTGAAGA+TGG | 0.437512 | 4_4:+45399332 | Msa0683050:CDS |
| GGCAACTTGTCGAGGTCGCC+TGG | 0.441149 | 4_4:+45397900 | Msa0683050:CDS |
| AACTTTACAAGCTGTATAAG+AGG | 0.441528 | 4_4:-45396676 | None:intergenic |
| CTGGAGGCCGTCACAATGTC+CGG | 0.442981 | 4_4:+45400708 | Msa0683050:three_prime_UTR |
| AAGTGGTTACCTGAAGATAA+TGG | 0.448628 | 4_4:-45396528 | None:intergenic |
| TCCTTTGGTTCCTCTCATGC+AGG | 0.452367 | 4_4:+45399577 | Msa0683050:CDS |
| AAGCCATGGTTTCGCTCGCT+AGG | 0.458359 | 4_4:-45396355 | None:intergenic |
| TTCAGGGAAGAACAGCACTT+TGG | 0.460830 | 4_4:+45400382 | Msa0683050:intron |
| ACCGAAGTCTAAACCGCAGC+CGG | 0.462626 | 4_4:+45397770 | Msa0683050:CDS |
| AGCTTCAACCGCTTCTTCCA+TGG | 0.463538 | 4_4:-45398297 | None:intergenic |
| AATCGGTAGTTTCAAGTCCT+TGG | 0.469923 | 4_4:+45397985 | Msa0683050:CDS |
| TTGGGTATGGAGGTATCGTT+AGG | 0.470120 | 4_4:+45400439 | Msa0683050:CDS |
| ATCAATGGATGAACTTGTAG+AGG | 0.470366 | 4_4:-45399288 | None:intergenic |
| CCTGAAGATAATGGCGAGAA+AGG | 0.473170 | 4_4:-45396519 | None:intergenic |
| GAAGGTTGATTTGGTACAAC+CGG | 0.473791 | 4_4:+45397731 | Msa0683050:CDS |
| CAGCTTCTTATCCCAGTACA+AGG | 0.477772 | 4_4:-45400182 | None:intergenic |
| CATAAGATTAAAGTTGGGTA+TGG | 0.478199 | 4_4:+45400426 | Msa0683050:CDS |
| TACTCTTGTGCAGGCCATAG+AGG | 0.478232 | 4_4:+45399376 | Msa0683050:CDS |
| GCTGTCTACTCCACCACCTT+CGG | 0.479663 | 4_4:+45398109 | Msa0683050:CDS |
| ATCAATTACAGTCAATCAAG+TGG | 0.480334 | 4_4:+45399238 | Msa0683050:CDS |
| ATGAACACAGCTGCCAAACT+TGG | 0.480956 | 4_4:+45399212 | Msa0683050:CDS |
| GGTTGTACCAAATCAACCTT+CGG | 0.483656 | 4_4:-45397729 | None:intergenic |
| TGCACAGAGTACAGCAGGAC+TGG | 0.488505 | 4_4:+45397962 | Msa0683050:CDS |
| TATACTAGTAGTTGGAAAGC+AGG | 0.489183 | 4_4:+45400144 | Msa0683050:CDS |
| GACATCCTCACAGGCCTCAA+TGG | 0.490228 | 4_4:-45398206 | None:intergenic |
| GTCTCAATCTTGTGAAGCAA+AGG | 0.494453 | 4_4:-45398401 | None:intergenic |
| AGTCCTGCTGTACTCTGTGC+AGG | 0.494921 | 4_4:-45397960 | None:intergenic |
| GAAAGAATAAGTGAATCTGC+AGG | 0.497798 | 4_4:+45398083 | Msa0683050:CDS |
| CACTGCCACTAAACAGAACT+GGG | 0.499754 | 4_4:+45396267 | Msa0683050:five_prime_UTR |
| CCCGGCTGCGGTTTAGACTT+CGG | 0.501904 | 4_4:-45397771 | None:intergenic |
| TCTGGAAACCTATCCTTTGG+AGG | 0.502203 | 4_4:-45400067 | None:intergenic |
| TATGCAACAGTCCCCACAGC+AGG | 0.503169 | 4_4:+45399553 | Msa0683050:CDS |
| GAAGCAATCCATCTTCACTA+AGG | 0.505272 | 4_4:-45399340 | None:intergenic |
| TCAGCTCGAACACTGCTTTG+AGG | 0.506201 | 4_4:-45399674 | None:intergenic |
| CAAGTCCTTGGTCTAATAGG+AGG | 0.509692 | 4_4:+45397997 | Msa0683050:CDS |
| CCAGTCTTGAGTCTTATCAA+TGG | 0.510525 | 4_4:-45399303 | None:intergenic |
| ACTACGGAGATGTATTTCTC+TGG | 0.512249 | 4_4:-45400085 | None:intergenic |
| GATAACATCAGAGGAAGAGC+TGG | 0.515013 | 4_4:+45398037 | Msa0683050:CDS |
| GCTCCTGGATGCAGCACAGA+AGG | 0.515565 | 4_4:-45400118 | None:intergenic |
| AGTCCTTAGTTAAAGGGGAG+TGG | 0.516301 | 4_4:+45399636 | Msa0683050:CDS |
| ATTATGAGTATCTTGGTAGC+GGG | 0.516620 | 4_4:+45399870 | Msa0683050:CDS |
| GGAGCATGTATACTAGTAGT+TGG | 0.518646 | 4_4:+45400136 | Msa0683050:CDS |
| CTTGAAATCGGCTGATGAAG+TGG | 0.519992 | 4_4:-45397813 | None:intergenic |
| GAGTACAGCAGGACTGGAAT+CGG | 0.520516 | 4_4:+45397968 | Msa0683050:CDS |
| CTTGGGAGTCCTTCCTCCAA+AGG | 0.521528 | 4_4:+45400054 | Msa0683050:CDS |
| TCCACATGTAGCATCCACTT+TGG | 0.523122 | 4_4:-45399986 | None:intergenic |
| TGGAGGTGTTGTTACTCCTA+TGG | 0.525807 | 4_4:+45397629 | Msa0683050:CDS |
| CGACGACTAGGACTTGAAAT+CGG | 0.526183 | 4_4:-45397825 | None:intergenic |
| ACAGGATCGGCTAGTAACTC+TGG | 0.526790 | 4_4:+45398167 | Msa0683050:CDS |
| AGCAGAGAAGAAGGAGAAGA+GGG | 0.527210 | 4_4:-45396486 | None:intergenic |
| AAGCAGAGAAGAAGGAGAAG+AGG | 0.528309 | 4_4:-45396487 | None:intergenic |
| AGCCATGGTTTCGCTCGCTA+GGG | 0.528942 | 4_4:-45396354 | None:intergenic |
| GTTAAAGGGGAGTGGGTCAA+AGG | 0.528973 | 4_4:+45399644 | Msa0683050:CDS |
| TTGTTGGGTGTCGTCTGCAT+TGG | 0.529130 | 4_4:+45397555 | Msa0683050:CDS |
| GGCAATGATACACTGTCTAC+AGG | 0.530242 | 4_4:+45399260 | Msa0683050:CDS |
| GGTGGCTTCTTCAACGACTC+CGG | 0.530803 | 4_4:-45397750 | None:intergenic |
| ATACAAGAGCAAGTGAGAAT+CGG | 0.531779 | 4_4:-45399939 | None:intergenic |
| GAGTCCTTCCTCCAAAGGAT+AGG | 0.531914 | 4_4:+45400059 | Msa0683050:CDS |
| AGGCCTGTGAGGATGTCTCC+AGG | 0.532208 | 4_4:+45398212 | Msa0683050:CDS |
| CAAATTGAGCAGTGGCGTGA+TGG | 0.532927 | 4_4:+45398344 | Msa0683050:CDS |
| AAGATTAAAGTTGGGTATGG+AGG | 0.534394 | 4_4:+45400429 | Msa0683050:CDS |
| GCTGCATTCTACTCTTGTGC+AGG | 0.537134 | 4_4:+45399367 | Msa0683050:CDS |
| TGTGTCATAAGATTAAAGTT+GGG | 0.538533 | 4_4:+45400421 | Msa0683050:CDS |
| CCTTCCTCCACCTATGTCCA+TGG | 0.539185 | 4_4:+45398280 | Msa0683050:CDS |
| CTTATGACACAGAATCAAGA+TGG | 0.542280 | 4_4:-45400409 | None:intergenic |
| GTCCTTAGTTAAAGGGGAGT+GGG | 0.545653 | 4_4:+45399637 | Msa0683050:CDS |
| ATACTCATAATTCTTCAAGC+AGG | 0.545765 | 4_4:-45399858 | None:intergenic |
| GTTCTATTGGCAACTTGTCG+AGG | 0.547249 | 4_4:+45397892 | Msa0683050:CDS |
| ATTGGATGGTTGAAGACTGT+TGG | 0.548223 | 4_4:-45396450 | None:intergenic |
| ACTACTAGTATACATGCTCC+TGG | 0.550196 | 4_4:-45400133 | None:intergenic |
| AAACCAGGAACCGAAGGTGG+TGG | 0.552028 | 4_4:-45398119 | None:intergenic |
| ACTGGGTAGCACATATATCA+TGG | 0.553498 | 4_4:+45396284 | Msa0683050:five_prime_UTR |
| TTACATGATAACTTCAACTG+AGG | 0.553507 | 4_4:-45400680 | None:intergenic |
| TCACCTGCACAGAGTACAGC+AGG | 0.555844 | 4_4:+45397957 | Msa0683050:CDS |
| TGTGCAGGTGATACTACTCC+GGG | 0.556207 | 4_4:-45397945 | None:intergenic |
| ACCACCTTCTCCCTTCTTAG+GGG | 0.557390 | 4_4:-45398255 | None:intergenic |
| GTTGAAGACTGTTGGAGGAG+AGG | 0.560917 | 4_4:-45396442 | None:intergenic |
| AATGTCCGGCGTGATAATCT+GGG | 0.561914 | 4_4:+45400722 | Msa0683050:three_prime_UTR |
| TTAGAATTCGACGCAACCAT+AGG | 0.562026 | 4_4:-45397645 | None:intergenic |
| GGATGGTTGAAGACTGTTGG+AGG | 0.562252 | 4_4:-45396447 | None:intergenic |
| TCAATGGATGAACTTGTAGA+GGG | 0.564545 | 4_4:-45399287 | None:intergenic |
| CCACCTTCTCCCTTCTTAGG+GGG | 0.564768 | 4_4:-45398254 | None:intergenic |
| CATATTAGGTACAAACGAGT+TGG | 0.565530 | 4_4:-45399534 | None:intergenic |
| CCGAAGTCTAAACCGCAGCC+GGG | 0.565733 | 4_4:+45397771 | Msa0683050:CDS |
| TAGATTTCGAAACATAATGC+TGG | 0.566365 | 4_4:+45400850 | Msa0683050:three_prime_UTR |
| GTGGATGCAACGTCTTATGC+TGG | 0.567802 | 4_4:+45400004 | Msa0683050:CDS |
| ACTTCAGTCCTTAGTTAAAG+GGG | 0.568978 | 4_4:+45399631 | Msa0683050:CDS |
| ACCTATGTCCATGGAAGAAG+CGG | 0.569193 | 4_4:+45398289 | Msa0683050:CDS |
| ACCGCTTCTTCCATGGACAT+AGG | 0.570460 | 4_4:-45398290 | None:intergenic |
| AATTCAGAAGAACCCGGCTG+CGG | 0.572345 | 4_4:-45397783 | None:intergenic |
| TCACCATCAACACGACGACT+AGG | 0.572718 | 4_4:-45397837 | None:intergenic |
| AATTATGAGTATCTTGGTAG+CGG | 0.575034 | 4_4:+45399869 | Msa0683050:CDS |
| CTGTGCAGGTGATACTACTC+CGG | 0.575494 | 4_4:-45397946 | None:intergenic |
| AGTCGTCGTGTTGATGGTGA+TGG | 0.576247 | 4_4:+45397840 | Msa0683050:CDS |
| AACCCTAGCGAGCGAAACCA+TGG | 0.578481 | 4_4:+45396352 | Msa0683050:exon |
| GGAACCAAAGGACCCTGCTG+TGG | 0.581478 | 4_4:-45399566 | None:intergenic |
| CCCTAATACAGTTACAGGAT+CGG | 0.581559 | 4_4:+45398154 | Msa0683050:CDS |
| TGGGTATGGAGGTATCGTTA+GGG | 0.581693 | 4_4:+45400440 | Msa0683050:CDS |
| TCATGTCGAATGTTAGCGGA+AGG | 0.582981 | 4_4:-45400554 | None:intergenic |
| GAAACCTATCCTTTGGAGGA+AGG | 0.584282 | 4_4:-45400063 | None:intergenic |
| TCGACACAGTCCTGCATGAG+AGG | 0.588828 | 4_4:-45399587 | None:intergenic |
| GAGATGAGAGCGTGATTGGA+TGG | 0.588995 | 4_4:-45396464 | None:intergenic |
| TTTGAGGATAGACACCCAAA+TGG | 0.589541 | 4_4:-45398325 | None:intergenic |
| GCCGTCATGTCGAATGTTAG+CGG | 0.590582 | 4_4:-45400558 | None:intergenic |
| TTACGTAAAACTAGATATGG+TGG | 0.593722 | 4_4:+45397609 | Msa0683050:CDS |
| AAGTCCTTGGTCTAATAGGA+GGG | 0.595120 | 4_4:+45397998 | Msa0683050:CDS |
| GAACCAAAGGACCCTGCTGT+GGG | 0.596020 | 4_4:-45399565 | None:intergenic |
| AATGGCGAGAAAGGCGAAAG+CGG | 0.596342 | 4_4:-45396510 | None:intergenic |
| GGCGTGATGGACTCAGACAA+TGG | 0.596919 | 4_4:+45398357 | Msa0683050:CDS |
| AAGCAATCCATCTTCACTAA+GGG | 0.597444 | 4_4:-45399339 | None:intergenic |
| ATCGTTAGGGGTATGCATCT+AGG | 0.598489 | 4_4:+45400453 | Msa0683050:CDS |
| TCTTCCATGGACATAGGTGG+AGG | 0.601401 | 4_4:-45398284 | None:intergenic |
| TGGAGGTGAAGAAGAAGCCA+TGG | 0.603690 | 4_4:-45396369 | None:intergenic |
| TCTTCACTAAGGGTAACTGC+TGG | 0.607381 | 4_4:-45399329 | None:intergenic |
| CCAAAACCAGGAACCGAAGG+TGG | 0.610030 | 4_4:-45398122 | None:intergenic |
| CTCCTGGATGCAGCACAGAA+GGG | 0.610089 | 4_4:-45400117 | None:intergenic |
| GAGCCTGGAGACATCCTCAC+AGG | 0.610961 | 4_4:-45398215 | None:intergenic |
| CCATGGACATAGGTGGAGGA+AGG | 0.613851 | 4_4:-45398280 | None:intergenic |
| CTTTCCTAGAACATCCAAAG+TGG | 0.615098 | 4_4:+45399972 | Msa0683050:CDS |
| TGCTAATAAGATAACATCAG+AGG | 0.616471 | 4_4:+45398028 | Msa0683050:CDS |
| AGAAGGGACTGAAGACACTA+CGG | 0.616789 | 4_4:-45400101 | None:intergenic |
| TCCTGCATGAGAGGAACCAA+AGG | 0.618525 | 4_4:-45399578 | None:intergenic |
| AATCCAAAACCAGGAACCGA+AGG | 0.619450 | 4_4:-45398125 | None:intergenic |
| AATGGATGAACTTGTAGAGG+GGG | 0.620948 | 4_4:-45399285 | None:intergenic |
| GAAGGACTCCCAAGAATAAG+GGG | 0.621294 | 4_4:-45400045 | None:intergenic |
| ATGCAACAGTCCCCACAGCA+GGG | 0.630389 | 4_4:+45399554 | Msa0683050:CDS |
| CGTAAAACTAGATATGGTGG+AGG | 0.630602 | 4_4:+45397612 | Msa0683050:CDS |
| GCTTCTTCCATGGACATAGG+TGG | 0.632379 | 4_4:-45398287 | None:intergenic |
| ATACTAGTAGTTGGAAAGCA+GGG | 0.632922 | 4_4:+45400145 | Msa0683050:CDS |
| TCAATTACAGTCAATCAAGT+GGG | 0.636455 | 4_4:+45399239 | Msa0683050:CDS |
| AAAGAATAAGTGAATCTGCA+GGG | 0.638876 | 4_4:+45398084 | Msa0683050:CDS |
| CCATTGATAAGACTCAAGAC+TGG | 0.640774 | 4_4:+45399303 | Msa0683050:CDS |
| TTATCATGTAATGTTTCTGG+AGG | 0.641191 | 4_4:+45400692 | Msa0683050:three_prime_UTR |
| GGGCTCGCTAATCCAAAACC+AGG | 0.642580 | 4_4:-45398134 | None:intergenic |
| CGTCTGCATTGGAACTATGT+TGG | 0.643710 | 4_4:+45397566 | Msa0683050:CDS |
| ACAAGCAATTCAGAAGAACC+CGG | 0.644327 | 4_4:-45397789 | None:intergenic |
| TCCGCTAACATTCGACATGA+CGG | 0.647162 | 4_4:+45400557 | Msa0683050:three_prime_UTR |
| TACACTGTGCAAAGAATCCG+AGG | 0.647375 | 4_4:+45399698 | Msa0683050:CDS |
| GGCTGCGGTTTAGACTTCGG+TGG | 0.653097 | 4_4:-45397768 | None:intergenic |
| AAGAGCAAGTGAGAATCGGA+TGG | 0.656585 | 4_4:-45399935 | None:intergenic |
| CATGTCGAATGTTAGCGGAA+GGG | 0.666207 | 4_4:-45400553 | None:intergenic |
| CAATGGATGAACTTGTAGAG+GGG | 0.667361 | 4_4:-45399286 | None:intergenic |
| TTAAAAGACATACACCATTG+AGG | 0.667685 | 4_4:+45398192 | Msa0683050:CDS |
| AATTTGGATTTGGATTGTGG+AGG | 0.671538 | 4_4:-45396386 | None:intergenic |
| TCTATCCTCAAATTGAGCAG+TGG | 0.673697 | 4_4:+45398336 | Msa0683050:CDS |
| TTATGAGTATCTTGGTAGCG+GGG | 0.675109 | 4_4:+45399871 | Msa0683050:CDS |
| TCCAAAGTGGATGCTACATG+TGG | 0.676915 | 4_4:+45399985 | Msa0683050:CDS |
| GGGTATGGAGGTATCGTTAG+GGG | 0.678040 | 4_4:+45400441 | Msa0683050:CDS |
| AACCAAAGGACCCTGCTGTG+GGG | 0.678871 | 4_4:-45399564 | None:intergenic |
| TATCACGCCGGACATTGTGA+CGG | 0.680734 | 4_4:-45400715 | None:intergenic |
| GATGCCCTCCTATTAGACCA+AGG | 0.691355 | 4_4:-45398002 | None:intergenic |
| ATACACCATTGAGGCCTGTG+AGG | 0.694783 | 4_4:+45398201 | Msa0683050:CDS |
| AAGAACCCAGATTATCACGC+CGG | 0.699015 | 4_4:-45400727 | None:intergenic |
| ACTGTTGGAGGAGAGGACTG+CGG | 0.700076 | 4_4:-45396435 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATGAAATTAATTGAA+TGG | - | chr4_4:45396583-45396602 | None:intergenic | 10.0% |
| !!! | TTATTTTGTTTTTAAAAATG+TGG | + | chr4_4:45397467-45397486 | Msa0683050:intron | 10.0% |
| !!! | TATTTTGTTTTTAAAAATGT+GGG | + | chr4_4:45397468-45397487 | Msa0683050:intron | 10.0% |
| !! | ATTGTGACAATAATTTAATA+AGG | + | chr4_4:45397036-45397055 | Msa0683050:intron | 15.0% |
| !! | TTGTGACAATAATTTAATAA+GGG | + | chr4_4:45397037-45397056 | Msa0683050:intron | 15.0% |
| !!! | TATGTTTGAAGAATTATTTT+TGG | + | chr4_4:45398709-45398728 | Msa0683050:intron | 15.0% |
| !!! | AATACGAAAATTTTATTAGT+TGG | - | chr4_4:45399184-45399203 | None:intergenic | 15.0% |
| !!! | AATAAAATTTTCGTATTCAT+AGG | + | chr4_4:45399187-45399206 | Msa0683050:intron | 15.0% |
| !! | AAATTATAAGTACATAGAAT+AGG | - | chr4_4:45400326-45400345 | None:intergenic | 15.0% |
| !! | GTACTTATAATTTATTATCT+TGG | + | chr4_4:45400333-45400352 | Msa0683050:intron | 15.0% |
| !!! | TTGTTTTTTTAGTACAAATT+AGG | - | chr4_4:45400789-45400808 | None:intergenic | 15.0% |
| !!! | ACTTTAACTTGTTTTTGTTT+TGG | + | chr4_4:45396703-45396722 | Msa0683050:intron | 20.0% |
| !!! | CTTTAACTTGTTTTTGTTTT+GGG | + | chr4_4:45396704-45396723 | Msa0683050:intron | 20.0% |
| !!! | ATAAATGATTTTGACATGTT+TGG | + | chr4_4:45396754-45396773 | Msa0683050:intron | 20.0% |
| !! | ATTCTACTTTAGTTAGAAAT+TGG | + | chr4_4:45396814-45396833 | Msa0683050:intron | 20.0% |
| !! | CTGTTACACATTTAAAAAAA+AGG | - | chr4_4:45397427-45397446 | None:intergenic | 20.0% |
| !!! | TTTTTACGTAAAACTAGATA+TGG | + | chr4_4:45397606-45397625 | Msa0683050:CDS | 20.0% |
| !!! | TGGTCAAAGTAATATTTTTT+AGG | + | chr4_4:45398469-45398488 | Msa0683050:intron | 20.0% |
| !!! | GTAATATTTTTTAGGATACA+TGG | + | chr4_4:45398477-45398496 | Msa0683050:intron | 20.0% |
| !!! | ATATTTCATACTCTTCTTTT+TGG | - | chr4_4:45398853-45398872 | None:intergenic | 20.0% |
| !! | TTATGAATCTATGATATGAT+TGG | + | chr4_4:45398895-45398914 | Msa0683050:intron | 20.0% |
| !! | AATATGAATCAACATACATT+TGG | - | chr4_4:45399405-45399424 | None:intergenic | 20.0% |
| !! | ATTCATATTCATATGCATAT+TGG | + | chr4_4:45399416-45399435 | Msa0683050:intron | 20.0% |
| !! | ATGATAAAAAGAATAAGAAG+TGG | + | chr4_4:45399900-45399919 | Msa0683050:CDS | 20.0% |
| !! | ACAATATTGAAAGGTTTAAT+AGG | - | chr4_4:45400291-45400310 | None:intergenic | 20.0% |
| !!! | TGGTTTAAAACAATATTGAA+AGG | - | chr4_4:45400300-45400319 | None:intergenic | 20.0% |
| !!! | TTTCATGTTTTGTTGTTGTA+GGG | + | chr4_4:45396614-45396633 | Msa0683050:intron | 25.0% |
| !!! | TTAGAATTGATTTTGCATCT+AGG | + | chr4_4:45396787-45396806 | Msa0683050:intron | 25.0% |
| !! | ATGATTTTGTAGATTGATAG+TGG | - | chr4_4:45396969-45396988 | None:intergenic | 25.0% |
| ! | TCAACTAGAATCAATTATGT+AGG | + | chr4_4:45397184-45397203 | Msa0683050:intron | 25.0% |
| !!! | AAGCTGCTTTTATTTTTTCT+GGG | + | chr4_4:45397397-45397416 | Msa0683050:intron | 25.0% |
| ! | TGATTTATTGAACTTCAGAT+TGG | + | chr4_4:45397511-45397530 | Msa0683050:intron | 25.0% |
| ! | GATTTATTGAACTTCAGATT+GGG | + | chr4_4:45397512-45397531 | Msa0683050:intron | 25.0% |
| ! | CCATAAAACAAGAAATGATT+AGG | - | chr4_4:45398452-45398471 | None:intergenic | 25.0% |
| !!! | CCTAATCATTTCTTGTTTTA+TGG | + | chr4_4:45398449-45398468 | Msa0683050:intron | 25.0% |
| !! | TAGAGAATGAGTTTTACATT+TGG | + | chr4_4:45398746-45398765 | Msa0683050:intron | 25.0% |
| ! | TTACTAGGAAAAATTACTCA+AGG | + | chr4_4:45398812-45398831 | Msa0683050:intron | 25.0% |
| !!! | TTTACTGGTTTTCTTAGTTT+GGG | - | chr4_4:45399038-45399057 | None:intergenic | 25.0% |
| !!! | TTTTACTGGTTTTCTTAGTT+TGG | - | chr4_4:45399039-45399058 | None:intergenic | 25.0% |
| ! | AAGTTCTATGGTATTTATAG+AGG | + | chr4_4:45399110-45399129 | Msa0683050:intron | 25.0% |
| ! | TGTATCTAACTTGAACTATA+TGG | - | chr4_4:45399137-45399156 | None:intergenic | 25.0% |
| ! | TGTAATTGATATACCAAGTT+TGG | - | chr4_4:45399228-45399247 | None:intergenic | 25.0% |
| ! | TCAGCAAATATAATCAAACT+GGG | - | chr4_4:45399466-45399485 | None:intergenic | 25.0% |
| ! | ATCAGCAAATATAATCAAAC+TGG | - | chr4_4:45399467-45399486 | None:intergenic | 25.0% |
| ! | TGATGAATCTAATGACTAAT+AGG | - | chr4_4:45399750-45399769 | None:intergenic | 25.0% |
| !!! | AAGCTCTAAAAATTTAGACA+AGG | - | chr4_4:45399828-45399847 | None:intergenic | 25.0% |
| ! | TTGAAGAATTATGAGTATCT+TGG | + | chr4_4:45399863-45399882 | Msa0683050:CDS | 25.0% |
| ! | TTGGTTCATATAGTAACATT+GGG | - | chr4_4:45400243-45400262 | None:intergenic | 25.0% |
| ! | TAAGTACATAGAATAGGTAT+TGG | - | chr4_4:45400320-45400339 | None:intergenic | 25.0% |
| ! | TGTGTCATAAGATTAAAGTT+GGG | + | chr4_4:45400421-45400440 | Msa0683050:CDS | 25.0% |
| ! | AAGTTATCATGTAATGTTTC+TGG | + | chr4_4:45400689-45400708 | Msa0683050:three_prime_UTR | 25.0% |
| ! | TTTTGAATGTGAGTGATGAA+TGG | - | chr4_4:45396560-45396579 | None:intergenic | 30.0% |
| !!! | CTTTCATGTTTTGTTGTTGT+AGG | + | chr4_4:45396613-45396632 | Msa0683050:intron | 30.0% |
| !!! | TTTTGTTGTTGTAGGGAAAA+TGG | + | chr4_4:45396621-45396640 | Msa0683050:intron | 30.0% |
| !! | TTTGTTGTTGTAGGGAAAAT+GGG | + | chr4_4:45396622-45396641 | Msa0683050:intron | 30.0% |
| AACTTTACAAGCTGTATAAG+AGG | - | chr4_4:45396679-45396698 | None:intergenic | 30.0% | |
| ! | TCACAATAGAAGTGTATGTT+TGG | - | chr4_4:45397023-45397042 | None:intergenic | 30.0% |
| ! | AAGGTAAAGTGATTTGTGTT+AGG | + | chr4_4:45397100-45397119 | Msa0683050:intron | 30.0% |
| TTGTGTGTATAAACCAATTC+TGG | + | chr4_4:45397139-45397158 | Msa0683050:intron | 30.0% | |
| !! | GTATAAACCAATTCTGGAAT+CGG | + | chr4_4:45397145-45397164 | Msa0683050:intron | 30.0% |
| ! | TTCTAGTTGAAGCTAGAATT+TGG | - | chr4_4:45397174-45397193 | None:intergenic | 30.0% |
| !! | AAAATTGATTCGGACATGTT+TGG | - | chr4_4:45397235-45397254 | None:intergenic | 30.0% |
| ! | AAACATGTCCGAATCAATTT+TGG | + | chr4_4:45397234-45397253 | Msa0683050:intron | 30.0% |
| !!! | GAAGCTGCTTTTATTTTTTC+TGG | + | chr4_4:45397396-45397415 | Msa0683050:intron | 30.0% |
| ! | AAGACACTGCAAATTTTGTT+GGG | + | chr4_4:45397540-45397559 | Msa0683050:intron | 30.0% |
| TTACGTAAAACTAGATATGG+TGG | + | chr4_4:45397609-45397628 | Msa0683050:CDS | 30.0% | |
| ! | AAACATCAGTTAGAGCTTTT+AGG | + | chr4_4:45397699-45397718 | Msa0683050:CDS | 30.0% |
| TGCTAATAAGATAACATCAG+AGG | + | chr4_4:45398028-45398047 | Msa0683050:CDS | 30.0% | |
| AAAGAATAAGTGAATCTGCA+GGG | + | chr4_4:45398084-45398103 | Msa0683050:CDS | 30.0% | |
| TTAAAAGACATACACCATTG+AGG | + | chr4_4:45398192-45398211 | Msa0683050:CDS | 30.0% | |
| ! | ACACACTGTCAATATTTTCT+TGG | - | chr4_4:45398586-45398605 | None:intergenic | 30.0% |
| GTTCAAATTGAATTACTGCT+TGG | + | chr4_4:45398607-45398626 | Msa0683050:intron | 30.0% | |
| ! | CTCGTTCTTGTAATACTTTT+TGG | - | chr4_4:45398782-45398801 | None:intergenic | 30.0% |
| TTACAAGAACGAGACTTATT+TGG | + | chr4_4:45398789-45398808 | Msa0683050:intron | 30.0% | |
| AGGAAAAATTACTCAAGGTA+TGG | + | chr4_4:45398817-45398836 | Msa0683050:intron | 30.0% | |
| ! | ATCTATGATATGATTGGTCA+TGG | + | chr4_4:45398901-45398920 | Msa0683050:intron | 30.0% |
| ! | AACCAGTAAAAACCTCATTT+TGG | + | chr4_4:45399048-45399067 | Msa0683050:intron | 30.0% |
| ! | AACCAAAATGAGGTTTTTAC+TGG | - | chr4_4:45399053-45399072 | None:intergenic | 30.0% |
| TAGAACTTCAACCGTAATAA+TGG | - | chr4_4:45399098-45399117 | None:intergenic | 30.0% | |
| TTATTACGGTTGAAGTTCTA+TGG | + | chr4_4:45399098-45399117 | Msa0683050:intron | 30.0% | |
| ATCAATTACAGTCAATCAAG+TGG | + | chr4_4:45399238-45399257 | Msa0683050:CDS | 30.0% | |
| TCAATTACAGTCAATCAAGT+GGG | + | chr4_4:45399239-45399258 | Msa0683050:CDS | 30.0% | |
| !! | GGAGTTCATTTTTCTGATAT+TGG | + | chr4_4:45399784-45399803 | Msa0683050:intron | 30.0% |
| !!! | TCTGATATTGGTTTTAATGC+TGG | + | chr4_4:45399796-45399815 | Msa0683050:intron | 30.0% |
| !!! | AAATTTTTAGAGCTTGCTGA+AGG | + | chr4_4:45399833-45399852 | Msa0683050:intron | 30.0% |
| ATACTCATAATTCTTCAAGC+AGG | - | chr4_4:45399861-45399880 | None:intergenic | 30.0% | |
| AATTATGAGTATCTTGGTAG+CGG | + | chr4_4:45399869-45399888 | Msa0683050:CDS | 30.0% | |
| TGGTTCATATAGTAACATTG+GGG | - | chr4_4:45400242-45400261 | None:intergenic | 30.0% | |
| ! | GTTGGTTCATATAGTAACAT+TGG | - | chr4_4:45400244-45400263 | None:intergenic | 30.0% |
| GTTCATAGTAAATAGGTTGT+TGG | - | chr4_4:45400262-45400281 | None:intergenic | 30.0% | |
| TGAAAGGTTTAATAGGTTGT+CGG | - | chr4_4:45400284-45400303 | None:intergenic | 30.0% | |
| !!! | AGCTCTGAGATTTATTTTTC+AGG | + | chr4_4:45400365-45400384 | Msa0683050:intron | 30.0% |
| !!! | GCTCTGAGATTTATTTTTCA+GGG | + | chr4_4:45400366-45400385 | Msa0683050:intron | 30.0% |
| CTGTGTCATAAGATTAAAGT+TGG | + | chr4_4:45400420-45400439 | Msa0683050:CDS | 30.0% | |
| CATAAGATTAAAGTTGGGTA+TGG | + | chr4_4:45400426-45400445 | Msa0683050:CDS | 30.0% | |
| TTTAAGCATTCTACCTGTTA+TGG | + | chr4_4:45400485-45400504 | Msa0683050:CDS | 30.0% | |
| TTACATGATAACTTCAACTG+AGG | - | chr4_4:45400683-45400702 | None:intergenic | 30.0% | |
| !! | TTATCATGTAATGTTTCTGG+AGG | + | chr4_4:45400692-45400711 | Msa0683050:three_prime_UTR | 30.0% |
| !!! | GGTTTTTGAAATGAGGTTTG+AGG | - | chr4_4:45396336-45396355 | None:intergenic | 35.0% |
| AATTTGGATTTGGATTGTGG+AGG | - | chr4_4:45396389-45396408 | None:intergenic | 35.0% | |
| GAGAATTTGGATTTGGATTG+TGG | - | chr4_4:45396392-45396411 | None:intergenic | 35.0% | |
| GTAAACGGAGAATTTGGATT+TGG | - | chr4_4:45396399-45396418 | None:intergenic | 35.0% | |
| !! | GTTTTGGTAAACGGAGAATT+TGG | - | chr4_4:45396405-45396424 | None:intergenic | 35.0% |
| !! | GAGATTAGGGTTTTGGTAAA+CGG | - | chr4_4:45396414-45396433 | None:intergenic | 35.0% |
| AAGTGGTTACCTGAAGATAA+TGG | - | chr4_4:45396531-45396550 | None:intergenic | 35.0% | |
| GTGATGAATGGTGAAAAAAG+TGG | - | chr4_4:45396548-45396567 | None:intergenic | 35.0% | |
| !!! | AACTTGTTTTTGTTTTGGGC+TGG | + | chr4_4:45396708-45396727 | Msa0683050:intron | 35.0% |
| ! | TCTGACTTAAAGTGAGTTGA+AGG | + | chr4_4:45397081-45397100 | Msa0683050:intron | 35.0% |
| TAGAGTGGCCAAAATTGATT+CGG | - | chr4_4:45397245-45397264 | None:intergenic | 35.0% | |
| ! | CAAGACACTGCAAATTTTGT+TGG | + | chr4_4:45397539-45397558 | Msa0683050:intron | 35.0% |
| GTGATGGTTCGAATTTGAAT+AGG | + | chr4_4:45397856-45397875 | Msa0683050:CDS | 35.0% | |
| !! | AATTTGAATAGGAGTGCTTC+TGG | + | chr4_4:45397867-45397886 | Msa0683050:CDS | 35.0% |
| ! | TTTCAAGTCCTTGGTCTAAT+AGG | + | chr4_4:45397994-45398013 | Msa0683050:CDS | 35.0% |
| GAAAGAATAAGTGAATCTGC+AGG | + | chr4_4:45398083-45398102 | Msa0683050:CDS | 35.0% | |
| ! | GTTGAAGCTTTTGACCATTT+GGG | + | chr4_4:45398311-45398330 | Msa0683050:CDS | 35.0% |
| ACGAGACTTATTTGGTTACT+AGG | + | chr4_4:45398797-45398816 | Msa0683050:intron | 35.0% | |
| ! | GATATGATTGGTCATGGTAA+TGG | + | chr4_4:45398907-45398926 | Msa0683050:intron | 35.0% |
| ATGGTTAATACTACCCCAAA+AGG | + | chr4_4:45398926-45398945 | Msa0683050:intron | 35.0% | |
| ! | TTCTCAATGTTCAGCCTTTT+GGG | - | chr4_4:45398943-45398962 | None:intergenic | 35.0% |
| ! | TTTCTCAATGTTCAGCCTTT+TGG | - | chr4_4:45398944-45398963 | None:intergenic | 35.0% |
| ! | AAGAACCCAAAGTTAGGTTT+TGG | + | chr4_4:45399005-45399024 | Msa0683050:intron | 35.0% |
| GTCATCCAAAACCTAACTTT+GGG | - | chr4_4:45399013-45399032 | None:intergenic | 35.0% | |
| GATTGGAAACAACCAAAATG+AGG | - | chr4_4:45399063-45399082 | None:intergenic | 35.0% | |
| AAGCTTGTGCTCCATTATTA+CGG | + | chr4_4:45399084-45399103 | Msa0683050:intron | 35.0% | |
| TCAATGGATGAACTTGTAGA+GGG | - | chr4_4:45399290-45399309 | None:intergenic | 35.0% | |
| ATCAATGGATGAACTTGTAG+AGG | - | chr4_4:45399291-45399310 | None:intergenic | 35.0% | |
| AAGCAATCCATCTTCACTAA+GGG | - | chr4_4:45399342-45399361 | None:intergenic | 35.0% | |
| GATTTCTGATATTCTCCTAC+TGG | + | chr4_4:45399494-45399513 | Msa0683050:intron | 35.0% | |
| CATATTAGGTACAAACGAGT+TGG | - | chr4_4:45399537-45399556 | None:intergenic | 35.0% | |
| TAACTAAGGACTGAAGTCTT+TGG | - | chr4_4:45399628-45399647 | None:intergenic | 35.0% | |
| AGACTTCAGTCCTTAGTTAA+AGG | + | chr4_4:45399629-45399648 | Msa0683050:CDS | 35.0% | |
| GACTTCAGTCCTTAGTTAAA+GGG | + | chr4_4:45399630-45399649 | Msa0683050:CDS | 35.0% | |
| ACTTCAGTCCTTAGTTAAAG+GGG | + | chr4_4:45399631-45399650 | Msa0683050:CDS | 35.0% | |
| ! | ATTATGAGTATCTTGGTAGC+GGG | + | chr4_4:45399870-45399889 | Msa0683050:CDS | 35.0% |
| ATACAAGAGCAAGTGAGAAT+CGG | - | chr4_4:45399942-45399961 | None:intergenic | 35.0% | |
| TAGCAAAAACCCCTTATTCT+TGG | + | chr4_4:45400036-45400055 | Msa0683050:CDS | 35.0% | |
| AGCAAAAACCCCTTATTCTT+GGG | + | chr4_4:45400037-45400056 | Msa0683050:CDS | 35.0% | |
| TATACTAGTAGTTGGAAAGC+AGG | + | chr4_4:45400144-45400163 | Msa0683050:CDS | 35.0% | |
| ATACTAGTAGTTGGAAAGCA+GGG | + | chr4_4:45400145-45400164 | Msa0683050:CDS | 35.0% | |
| !! | GTTGTCGGTTCATAGTAAAT+AGG | - | chr4_4:45400269-45400288 | None:intergenic | 35.0% |
| CTTATGACACAGAATCAAGA+TGG | - | chr4_4:45400412-45400431 | None:intergenic | 35.0% | |
| AAGATTAAAGTTGGGTATGG+AGG | + | chr4_4:45400429-45400448 | Msa0683050:CDS | 35.0% | |
| ACTGGGTAGCACATATATCA+TGG | + | chr4_4:45396284-45396303 | Msa0683050:five_prime_UTR | 40.0% | |
| !!! | TCGCTAGGGTTTTTGAAATG+AGG | - | chr4_4:45396343-45396362 | None:intergenic | 40.0% |
| ATTGGATGGTTGAAGACTGT+TGG | - | chr4_4:45396453-45396472 | None:intergenic | 40.0% | |
| ! | TGGTTGCTTTCGAGTAGAAT+TGG | - | chr4_4:45397215-45397234 | None:intergenic | 40.0% |
| ! | GTTTGGTTACACTTCTAGAG+TGG | - | chr4_4:45397260-45397279 | None:intergenic | 40.0% |
| GTAACCAAACAAGCAGAAGT+TGG | + | chr4_4:45397270-45397289 | Msa0683050:intron | 40.0% | |
| CAAACCAACTTCTGCTTGTT+TGG | - | chr4_4:45397277-45397296 | None:intergenic | 40.0% | |
| !! | AGCAGAAGTTGGTTTGTGTT+TGG | + | chr4_4:45397281-45397300 | Msa0683050:intron | 40.0% |
| CGTAAAACTAGATATGGTGG+AGG | + | chr4_4:45397612-45397631 | Msa0683050:CDS | 40.0% | |
| TTAGAATTCGACGCAACCAT+AGG | - | chr4_4:45397648-45397667 | None:intergenic | 40.0% | |
| GGTTGTACCAAATCAACCTT+CGG | - | chr4_4:45397732-45397751 | None:intergenic | 40.0% | |
| !! | GAAGGTTGATTTGGTACAAC+CGG | + | chr4_4:45397731-45397750 | Msa0683050:CDS | 40.0% |
| ACAAGCAATTCAGAAGAACC+CGG | - | chr4_4:45397792-45397811 | None:intergenic | 40.0% | |
| AGATAAAAAGTCGCTGAACC+AGG | - | chr4_4:45397921-45397940 | None:intergenic | 40.0% | |
| ! | GCGACTTTTTATCTTTCTCC+CGG | + | chr4_4:45397927-45397946 | Msa0683050:CDS | 40.0% |
| ! | AATCGGTAGTTTCAAGTCCT+TGG | + | chr4_4:45397985-45398004 | Msa0683050:CDS | 40.0% |
| AAGTCCTTGGTCTAATAGGA+GGG | + | chr4_4:45397998-45398017 | Msa0683050:CDS | 40.0% | |
| CCGATCCTGTAACTGTATTA+GGG | - | chr4_4:45398157-45398176 | None:intergenic | 40.0% | |
| CCCTAATACAGTTACAGGAT+CGG | + | chr4_4:45398154-45398173 | Msa0683050:CDS | 40.0% | |
| ! | AGGGGGAGTCTTAAACTTTT+GGG | - | chr4_4:45398240-45398259 | None:intergenic | 40.0% |
| ! | TAGGGGGAGTCTTAAACTTT+TGG | - | chr4_4:45398241-45398260 | None:intergenic | 40.0% |
| ! | TTTAAGACTCCCCCTAAGAA+GGG | + | chr4_4:45398245-45398264 | Msa0683050:CDS | 40.0% |
| ! | GGTTGAAGCTTTTGACCATT+TGG | + | chr4_4:45398310-45398329 | Msa0683050:CDS | 40.0% |
| TTTGAGGATAGACACCCAAA+TGG | - | chr4_4:45398328-45398347 | None:intergenic | 40.0% | |
| TCTATCCTCAAATTGAGCAG+TGG | + | chr4_4:45398336-45398355 | Msa0683050:CDS | 40.0% | |
| GTCTCAATCTTGTGAAGCAA+AGG | - | chr4_4:45398404-45398423 | None:intergenic | 40.0% | |
| GATTGAGACAAGTCATGTTC+AGG | + | chr4_4:45398415-45398434 | Msa0683050:CDS | 40.0% | |
| ! | TCTCAATGTTCAGCCTTTTG+GGG | - | chr4_4:45398942-45398961 | None:intergenic | 40.0% |
| CTTGAATCTTCAGCTCACAA+AGG | + | chr4_4:45398978-45398997 | Msa0683050:intron | 40.0% | |
| GGCTTAAAGAACCCAAAGTT+AGG | + | chr4_4:45398999-45399018 | Msa0683050:intron | 40.0% | |
| GGTCATCCAAAACCTAACTT+TGG | - | chr4_4:45399014-45399033 | None:intergenic | 40.0% | |
| !!! | ACTGGTTTTCTTAGTTTGGG+TGG | - | chr4_4:45399035-45399054 | None:intergenic | 40.0% |
| ! | AATGGAGCACAAGCTTTGAT+TGG | - | chr4_4:45399080-45399099 | None:intergenic | 40.0% |
| AATGGATGAACTTGTAGAGG+GGG | - | chr4_4:45399288-45399307 | None:intergenic | 40.0% | |
| CAATGGATGAACTTGTAGAG+GGG | - | chr4_4:45399289-45399308 | None:intergenic | 40.0% | |
| ! | CCAGTCTTGAGTCTTATCAA+TGG | - | chr4_4:45399306-45399325 | None:intergenic | 40.0% |
| CCATTGATAAGACTCAAGAC+TGG | + | chr4_4:45399303-45399322 | Msa0683050:CDS | 40.0% | |
| GAAGCAATCCATCTTCACTA+AGG | - | chr4_4:45399343-45399362 | None:intergenic | 40.0% | |
| CATACATTTGGAAGCCTCTA+TGG | - | chr4_4:45399393-45399412 | None:intergenic | 40.0% | |
| ! | TTCATCAGATTTTCTGCAGC+AGG | + | chr4_4:45399763-45399782 | Msa0683050:intron | 40.0% |
| !! | TTATGAGTATCTTGGTAGCG+GGG | + | chr4_4:45399871-45399890 | Msa0683050:CDS | 40.0% |
| CTTTCCTAGAACATCCAAAG+TGG | + | chr4_4:45399972-45399991 | Msa0683050:CDS | 40.0% | |
| ! | TTCTCTGGAAACCTATCCTT+TGG | - | chr4_4:45400073-45400092 | None:intergenic | 40.0% |
| ACTACGGAGATGTATTTCTC+TGG | - | chr4_4:45400088-45400107 | None:intergenic | 40.0% | |
| ACTACTAGTATACATGCTCC+TGG | - | chr4_4:45400136-45400155 | None:intergenic | 40.0% | |
| GGAGCATGTATACTAGTAGT+TGG | + | chr4_4:45400136-45400155 | Msa0683050:CDS | 40.0% | |
| CAGTACAAGGCAAAAATTGG+GGG | - | chr4_4:45400172-45400191 | None:intergenic | 40.0% | |
| CCAGTACAAGGCAAAAATTG+GGG | - | chr4_4:45400173-45400192 | None:intergenic | 40.0% | |
| CCCAGTACAAGGCAAAAATT+GGG | - | chr4_4:45400174-45400193 | None:intergenic | 40.0% | |
| ! | CCCAATTTTTGCCTTGTACT+GGG | + | chr4_4:45400171-45400190 | Msa0683050:CDS | 40.0% |
| TCCCAGTACAAGGCAAAAAT+TGG | - | chr4_4:45400175-45400194 | None:intergenic | 40.0% | |
| TCAGATTCTGTCTCCATAAC+AGG | - | chr4_4:45400501-45400520 | None:intergenic | 40.0% | |
| CACTGCCACTAAACAGAACT+GGG | + | chr4_4:45396267-45396286 | Msa0683050:five_prime_UTR | 45.0% | |
| TGCTACCCAGTTCTGTTTAG+TGG | - | chr4_4:45396275-45396294 | None:intergenic | 45.0% | |
| AGCAGAGAAGAAGGAGAAGA+GGG | - | chr4_4:45396489-45396508 | None:intergenic | 45.0% | |
| AAGCAGAGAAGAAGGAGAAG+AGG | - | chr4_4:45396490-45396509 | None:intergenic | 45.0% | |
| ! | CCTGAAGATAATGGCGAGAA+AGG | - | chr4_4:45396522-45396541 | None:intergenic | 45.0% |
| CCTTTCTCGCCATTATCTTC+AGG | + | chr4_4:45396519-45396538 | Msa0683050:CDS | 45.0% | |
| ! | AGTGGCTAGAAGTGAGTTGA+AGG | - | chr4_4:45396951-45396970 | None:intergenic | 45.0% |
| TTGGCTTCCGATTCCAGAAT+TGG | - | chr4_4:45397155-45397174 | None:intergenic | 45.0% | |
| CGTCTGCATTGGAACTATGT+TGG | + | chr4_4:45397566-45397585 | Msa0683050:CDS | 45.0% | |
| !! | TGGAGGTGTTGTTACTCCTA+TGG | + | chr4_4:45397629-45397648 | Msa0683050:CDS | 45.0% |
| ! | AGTGAAGCCGAAGGTTGATT+TGG | + | chr4_4:45397722-45397741 | Msa0683050:CDS | 45.0% |
| CTTGAAATCGGCTGATGAAG+TGG | - | chr4_4:45397816-45397835 | None:intergenic | 45.0% | |
| CGACGACTAGGACTTGAAAT+CGG | - | chr4_4:45397828-45397847 | None:intergenic | 45.0% | |
| AGTGCTTCTGGTCGTTCTAT+TGG | + | chr4_4:45397879-45397898 | Msa0683050:CDS | 45.0% | |
| GTTCTATTGGCAACTTGTCG+AGG | + | chr4_4:45397892-45397911 | Msa0683050:CDS | 45.0% | |
| CAAGTCCTTGGTCTAATAGG+AGG | + | chr4_4:45397997-45398016 | Msa0683050:CDS | 45.0% | |
| GATAACATCAGAGGAAGAGC+TGG | + | chr4_4:45398037-45398056 | Msa0683050:CDS | 45.0% | |
| AATCCAAAACCAGGAACCGA+AGG | - | chr4_4:45398128-45398147 | None:intergenic | 45.0% | |
| GCCGATCCTGTAACTGTATT+AGG | - | chr4_4:45398158-45398177 | None:intergenic | 45.0% | |
| !! | GTCTTAAACTTTTGGGAGCC+TGG | - | chr4_4:45398233-45398252 | None:intergenic | 45.0% |
| ! | GTTTAAGACTCCCCCTAAGA+AGG | + | chr4_4:45398244-45398263 | Msa0683050:CDS | 45.0% |
| ACCTATGTCCATGGAAGAAG+CGG | + | chr4_4:45398289-45398308 | Msa0683050:CDS | 45.0% | |
| ATTTGTACCACACCCTTCCT+TGG | + | chr4_4:45398540-45398559 | Msa0683050:intron | 45.0% | |
| ! | ACATCCCTTTTGCCAAGGAA+GGG | - | chr4_4:45398555-45398574 | None:intergenic | 45.0% |
| ATGAACACAGCTGCCAAACT+TGG | + | chr4_4:45399212-45399231 | Msa0683050:CDS | 45.0% | |
| GGCAATGATACACTGTCTAC+AGG | + | chr4_4:45399260-45399279 | Msa0683050:CDS | 45.0% | |
| TCTTCACTAAGGGTAACTGC+TGG | - | chr4_4:45399332-45399351 | None:intergenic | 45.0% | |
| GCAGTTACCCTTAGTGAAGA+TGG | + | chr4_4:45399332-45399351 | Msa0683050:CDS | 45.0% | |
| GCATGCAAACATGAACCAGT+AGG | - | chr4_4:45399512-45399531 | None:intergenic | 45.0% | |
| TGTGGGGACTGTTGCATATT+AGG | - | chr4_4:45399551-45399570 | None:intergenic | 45.0% | |
| AGTCCTTAGTTAAAGGGGAG+TGG | + | chr4_4:45399636-45399655 | Msa0683050:CDS | 45.0% | |
| GTCCTTAGTTAAAGGGGAGT+GGG | + | chr4_4:45399637-45399656 | Msa0683050:CDS | 45.0% | |
| TACACTGTGCAAAGAATCCG+AGG | + | chr4_4:45399698-45399717 | Msa0683050:CDS | 45.0% | |
| AAGAGCAAGTGAGAATCGGA+TGG | - | chr4_4:45399938-45399957 | None:intergenic | 45.0% | |
| GCATCCACTTTGGATGTTCT+AGG | - | chr4_4:45399979-45399998 | None:intergenic | 45.0% | |
| TCCAAAGTGGATGCTACATG+TGG | + | chr4_4:45399985-45400004 | Msa0683050:CDS | 45.0% | |
| TCCACATGTAGCATCCACTT+TGG | - | chr4_4:45399989-45400008 | None:intergenic | 45.0% | |
| GAAGGACTCCCAAGAATAAG+GGG | - | chr4_4:45400048-45400067 | None:intergenic | 45.0% | |
| GGAAGGACTCCCAAGAATAA+GGG | - | chr4_4:45400049-45400068 | None:intergenic | 45.0% | |
| AGGAAGGACTCCCAAGAATA+AGG | - | chr4_4:45400050-45400069 | None:intergenic | 45.0% | |
| ! | GAAACCTATCCTTTGGAGGA+AGG | - | chr4_4:45400066-45400085 | None:intergenic | 45.0% |
| TCTGGAAACCTATCCTTTGG+AGG | - | chr4_4:45400070-45400089 | None:intergenic | 45.0% | |
| AGAAGGGACTGAAGACACTA+CGG | - | chr4_4:45400104-45400123 | None:intergenic | 45.0% | |
| ! | CCCCAATTTTTGCCTTGTAC+TGG | + | chr4_4:45400170-45400189 | Msa0683050:CDS | 45.0% |
| CAGCTTCTTATCCCAGTACA+AGG | - | chr4_4:45400185-45400204 | None:intergenic | 45.0% | |
| GAAGCTGCAACTTTCTCTTC+AGG | + | chr4_4:45400198-45400217 | Msa0683050:CDS | 45.0% | |
| CTGCAACTTTCTCTTCAGGT+GGG | + | chr4_4:45400202-45400221 | Msa0683050:intron | 45.0% | |
| TAGTAACATTGGGGCTACAG+AGG | - | chr4_4:45400233-45400252 | None:intergenic | 45.0% | |
| TTCAGGGAAGAACAGCACTT+TGG | + | chr4_4:45400382-45400401 | Msa0683050:intron | 45.0% | |
| TCAGGGAAGAACAGCACTTT+GGG | + | chr4_4:45400383-45400402 | Msa0683050:intron | 45.0% | |
| !! | TTGGGTATGGAGGTATCGTT+AGG | + | chr4_4:45400439-45400458 | Msa0683050:CDS | 45.0% |
| !! | TGGGTATGGAGGTATCGTTA+GGG | + | chr4_4:45400440-45400459 | Msa0683050:CDS | 45.0% |
| ! | ATCGTTAGGGGTATGCATCT+AGG | + | chr4_4:45400453-45400472 | Msa0683050:CDS | 45.0% |
| CATGTCGAATGTTAGCGGAA+GGG | - | chr4_4:45400556-45400575 | None:intergenic | 45.0% | |
| TCATGTCGAATGTTAGCGGA+AGG | - | chr4_4:45400557-45400576 | None:intergenic | 45.0% | |
| TCCGCTAACATTCGACATGA+CGG | + | chr4_4:45400557-45400576 | Msa0683050:three_prime_UTR | 45.0% | |
| AATGTCCGGCGTGATAATCT+GGG | + | chr4_4:45400722-45400741 | Msa0683050:three_prime_UTR | 45.0% | |
| AAGAACCCAGATTATCACGC+CGG | - | chr4_4:45400730-45400749 | None:intergenic | 45.0% | |
| GCACTGCCACTAAACAGAAC+TGG | + | chr4_4:45396266-45396285 | Msa0683050:five_prime_UTR | 50.0% | |
| TGGAGGTGAAGAAGAAGCCA+TGG | - | chr4_4:45396372-45396391 | None:intergenic | 50.0% | |
| ! | CTGCGGAGAGATTAGGGTTT+TGG | - | chr4_4:45396421-45396440 | None:intergenic | 50.0% |
| AGAGGACTGCGGAGAGATTA+GGG | - | chr4_4:45396427-45396446 | None:intergenic | 50.0% | |
| GTTGAAGACTGTTGGAGGAG+AGG | - | chr4_4:45396445-45396464 | None:intergenic | 50.0% | |
| GGATGGTTGAAGACTGTTGG+AGG | - | chr4_4:45396450-45396469 | None:intergenic | 50.0% | |
| ! | GAGATGAGAGCGTGATTGGA+TGG | - | chr4_4:45396467-45396486 | None:intergenic | 50.0% |
| GAAAGCGGAAGCAGAGAAGA+AGG | - | chr4_4:45396498-45396517 | None:intergenic | 50.0% | |
| AATGGCGAGAAAGGCGAAAG+CGG | - | chr4_4:45396513-45396532 | None:intergenic | 50.0% | |
| ! | TTGTTGGGTGTCGTCTGCAT+TGG | + | chr4_4:45397555-45397574 | Msa0683050:CDS | 50.0% |
| !! | GCTTTTAGGAGTGAAGCCGA+AGG | + | chr4_4:45397713-45397732 | Msa0683050:CDS | 50.0% |
| AATTCAGAAGAACCCGGCTG+CGG | - | chr4_4:45397786-45397805 | None:intergenic | 50.0% | |
| AGTCCTAGTCGTCGTGTTGA+TGG | + | chr4_4:45397834-45397853 | Msa0683050:CDS | 50.0% | |
| TCACCATCAACACGACGACT+AGG | - | chr4_4:45397840-45397859 | None:intergenic | 50.0% | |
| !! | AGTCGTCGTGTTGATGGTGA+TGG | + | chr4_4:45397840-45397859 | Msa0683050:CDS | 50.0% |
| TGTGCAGGTGATACTACTCC+GGG | - | chr4_4:45397948-45397967 | None:intergenic | 50.0% | |
| CTGTGCAGGTGATACTACTC+CGG | - | chr4_4:45397949-45397968 | None:intergenic | 50.0% | |
| GAGTACAGCAGGACTGGAAT+CGG | + | chr4_4:45397968-45397987 | Msa0683050:CDS | 50.0% | |
| GATGCCCTCCTATTAGACCA+AGG | - | chr4_4:45398005-45398024 | None:intergenic | 50.0% | |
| GCGAGCCCTAATACAGTTAC+AGG | + | chr4_4:45398149-45398168 | Msa0683050:CDS | 50.0% | |
| ACAGGATCGGCTAGTAACTC+TGG | + | chr4_4:45398167-45398186 | Msa0683050:CDS | 50.0% | |
| ATACACCATTGAGGCCTGTG+AGG | + | chr4_4:45398201-45398220 | Msa0683050:CDS | 50.0% | |
| ACCACCTTCTCCCTTCTTAG+GGG | - | chr4_4:45398258-45398277 | None:intergenic | 50.0% | |
| CACCACCTTCTCCCTTCTTA+GGG | - | chr4_4:45398259-45398278 | None:intergenic | 50.0% | |
| TCACCACCTTCTCCCTTCTT+AGG | - | chr4_4:45398260-45398279 | None:intergenic | 50.0% | |
| TCTTCCATGGACATAGGTGG+AGG | - | chr4_4:45398287-45398306 | None:intergenic | 50.0% | |
| GCTTCTTCCATGGACATAGG+TGG | - | chr4_4:45398290-45398309 | None:intergenic | 50.0% | |
| ACCGCTTCTTCCATGGACAT+AGG | - | chr4_4:45398293-45398312 | None:intergenic | 50.0% | |
| AGCTTCAACCGCTTCTTCCA+TGG | - | chr4_4:45398300-45398319 | None:intergenic | 50.0% | |
| TCACGCCACTGCTCAATTTG+AGG | - | chr4_4:45398344-45398363 | None:intergenic | 50.0% | |
| CAAATTGAGCAGTGGCGTGA+TGG | + | chr4_4:45398344-45398363 | Msa0683050:CDS | 50.0% | |
| CACACCCTTCCTTGGCAAAA+GGG | + | chr4_4:45398548-45398567 | Msa0683050:intron | 50.0% | |
| ! | GACATCCCTTTTGCCAAGGA+AGG | - | chr4_4:45398556-45398575 | None:intergenic | 50.0% |
| GCTGCATTCTACTCTTGTGC+AGG | + | chr4_4:45399367-45399386 | Msa0683050:CDS | 50.0% | |
| TACTCTTGTGCAGGCCATAG+AGG | + | chr4_4:45399376-45399395 | Msa0683050:CDS | 50.0% | |
| ! | TCCTTTGGTTCCTCTCATGC+AGG | + | chr4_4:45399577-45399596 | Msa0683050:CDS | 50.0% |
| TCCTGCATGAGAGGAACCAA+AGG | - | chr4_4:45399581-45399600 | None:intergenic | 50.0% | |
| GACCCACTCCCCTTTAACTA+AGG | - | chr4_4:45399642-45399661 | None:intergenic | 50.0% | |
| GTTAAAGGGGAGTGGGTCAA+AGG | + | chr4_4:45399644-45399663 | Msa0683050:CDS | 50.0% | |
| TCAGCTCGAACACTGCTTTG+AGG | - | chr4_4:45399677-45399696 | None:intergenic | 50.0% | |
| CTGTGCAAAGAATCCGAGGT+AGG | + | chr4_4:45399702-45399721 | Msa0683050:intron | 50.0% | |
| CCATGATTACGTGCCTACCT+CGG | - | chr4_4:45399718-45399737 | None:intergenic | 50.0% | |
| GTGGATGCAACGTCTTATGC+TGG | + | chr4_4:45400004-45400023 | Msa0683050:CDS | 50.0% | |
| GAGTCCTTCCTCCAAAGGAT+AGG | + | chr4_4:45400059-45400078 | Msa0683050:CDS | 50.0% | |
| GCTGCAACTTTCTCTTCAGG+TGG | + | chr4_4:45400201-45400220 | Msa0683050:intron | 50.0% | |
| !! | GGGTATGGAGGTATCGTTAG+GGG | + | chr4_4:45400441-45400460 | Msa0683050:CDS | 50.0% |
| GCCGTCATGTCGAATGTTAG+CGG | - | chr4_4:45400561-45400580 | None:intergenic | 50.0% | |
| TATCACGCCGGACATTGTGA+CGG | - | chr4_4:45400718-45400737 | None:intergenic | 50.0% | |
| CAATGTCCGGCGTGATAATC+TGG | + | chr4_4:45400721-45400740 | Msa0683050:three_prime_UTR | 50.0% | |
| AACCCTAGCGAGCGAAACCA+TGG | + | chr4_4:45396352-45396371 | Msa0683050:exon | 55.0% | |
| AGCCATGGTTTCGCTCGCTA+GGG | - | chr4_4:45396357-45396376 | None:intergenic | 55.0% | |
| AAGCCATGGTTTCGCTCGCT+AGG | - | chr4_4:45396358-45396377 | None:intergenic | 55.0% | |
| GAGAGGACTGCGGAGAGATT+AGG | - | chr4_4:45396428-45396447 | None:intergenic | 55.0% | |
| ACTGTTGGAGGAGAGGACTG+CGG | - | chr4_4:45396438-45396457 | None:intergenic | 55.0% | |
| ! | GAGGGAGATGAGAGCGTGAT+TGG | - | chr4_4:45396471-45396490 | None:intergenic | 55.0% |
| GGTGGCTTCTTCAACGACTC+CGG | - | chr4_4:45397753-45397772 | None:intergenic | 55.0% | |
| ACCGAAGTCTAAACCGCAGC+CGG | + | chr4_4:45397770-45397789 | Msa0683050:CDS | 55.0% | |
| TCACCTGCACAGAGTACAGC+AGG | + | chr4_4:45397957-45397976 | Msa0683050:CDS | 55.0% | |
| AGTCCTGCTGTACTCTGTGC+AGG | - | chr4_4:45397963-45397982 | None:intergenic | 55.0% | |
| TGCACAGAGTACAGCAGGAC+TGG | + | chr4_4:45397962-45397981 | Msa0683050:CDS | 55.0% | |
| GCTGTCTACTCCACCACCTT+CGG | + | chr4_4:45398109-45398128 | Msa0683050:CDS | 55.0% | |
| AAACCAGGAACCGAAGGTGG+TGG | - | chr4_4:45398122-45398141 | None:intergenic | 55.0% | |
| CCAAAACCAGGAACCGAAGG+TGG | - | chr4_4:45398125-45398144 | None:intergenic | 55.0% | |
| ! | CCACCTTCGGTTCCTGGTTT+TGG | + | chr4_4:45398122-45398141 | Msa0683050:CDS | 55.0% |
| GGGCTCGCTAATCCAAAACC+AGG | - | chr4_4:45398137-45398156 | None:intergenic | 55.0% | |
| GACATCCTCACAGGCCTCAA+TGG | - | chr4_4:45398209-45398228 | None:intergenic | 55.0% | |
| ACTCCCCCTAAGAAGGGAGA+AGG | + | chr4_4:45398251-45398270 | Msa0683050:CDS | 55.0% | |
| CCACCTTCTCCCTTCTTAGG+GGG | - | chr4_4:45398257-45398276 | None:intergenic | 55.0% | |
| CCATGGACATAGGTGGAGGA+AGG | - | chr4_4:45398283-45398302 | None:intergenic | 55.0% | |
| CCTTCCTCCACCTATGTCCA+TGG | + | chr4_4:45398280-45398299 | Msa0683050:CDS | 55.0% | |
| !! | GGCGTGATGGACTCAGACAA+TGG | + | chr4_4:45398357-45398376 | Msa0683050:CDS | 55.0% |
| ! | CCTTTTGCCAAGGAAGGGTG+TGG | - | chr4_4:45398550-45398569 | None:intergenic | 55.0% |
| CCACACCCTTCCTTGGCAAA+AGG | + | chr4_4:45398547-45398566 | Msa0683050:intron | 55.0% | |
| ! | GCTCGACATCCCTTTTGCCA+AGG | - | chr4_4:45398560-45398579 | None:intergenic | 55.0% |
| TATGCAACAGTCCCCACAGC+AGG | + | chr4_4:45399553-45399572 | Msa0683050:CDS | 55.0% | |
| ATGCAACAGTCCCCACAGCA+GGG | + | chr4_4:45399554-45399573 | Msa0683050:CDS | 55.0% | |
| AACCAAAGGACCCTGCTGTG+GGG | - | chr4_4:45399567-45399586 | None:intergenic | 55.0% | |
| GAACCAAAGGACCCTGCTGT+GGG | - | chr4_4:45399568-45399587 | None:intergenic | 55.0% | |
| TCGACACAGTCCTGCATGAG+AGG | - | chr4_4:45399590-45399609 | None:intergenic | 55.0% | |
| CCGAGGTAGGCACGTAATCA+TGG | + | chr4_4:45399715-45399734 | Msa0683050:intron | 55.0% | |
| CTTGGGAGTCCTTCCTCCAA+AGG | + | chr4_4:45400054-45400073 | Msa0683050:CDS | 55.0% | |
| CTCCTGGATGCAGCACAGAA+GGG | - | chr4_4:45400120-45400139 | None:intergenic | 55.0% | |
| GGCTGCGGTTTAGACTTCGG+TGG | - | chr4_4:45397771-45397790 | None:intergenic | 60.0% | |
| CCCGGCTGCGGTTTAGACTT+CGG | - | chr4_4:45397774-45397793 | None:intergenic | 60.0% | |
| CCGAAGTCTAAACCGCAGCC+GGG | + | chr4_4:45397771-45397790 | Msa0683050:CDS | 60.0% | |
| ACTCCACCACCTTCGGTTCC+TGG | + | chr4_4:45398116-45398135 | Msa0683050:CDS | 60.0% | |
| AGGCCTGTGAGGATGTCTCC+AGG | + | chr4_4:45398212-45398231 | Msa0683050:CDS | 60.0% | |
| GAGCCTGGAGACATCCTCAC+AGG | - | chr4_4:45398218-45398237 | None:intergenic | 60.0% | |
| CCCCCTAAGAAGGGAGAAGG+TGG | + | chr4_4:45398254-45398273 | Msa0683050:CDS | 60.0% | |
| GGAACCAAAGGACCCTGCTG+TGG | - | chr4_4:45399569-45399588 | None:intergenic | 60.0% | |
| GTCCCTTCTGTGCTGCATCC+AGG | + | chr4_4:45400115-45400134 | Msa0683050:CDS | 60.0% | |
| GCTCCTGGATGCAGCACAGA+AGG | - | chr4_4:45400121-45400140 | None:intergenic | 60.0% | |
| CTGGAGGCCGTCACAATGTC+CGG | + | chr4_4:45400708-45400727 | Msa0683050:three_prime_UTR | 60.0% | |
| GGCAACTTGTCGAGGTCGCC+TGG | + | chr4_4:45397900-45397919 | Msa0683050:CDS | 65.0% | |
| GTCCCCACAGCAGGGTCCTT+TGG | + | chr4_4:45399562-45399581 | Msa0683050:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 45396261 | 45400872 | 45396261 | ID=Msa0683050;Name=Msa0683050 |
| chr4_4 | mRNA | 45396261 | 45400872 | 45396261 | ID=Msa0683050-mRNA-1;Parent=Msa0683050;Name=Msa0683050-mRNA-1;_AED=0.06;_eAED=0.06;_QI=110|0.83|0.71|1|1|1|7|345|675 |
| chr4_4 | exon | 45396261 | 45396540 | 45396261 | ID=Msa0683050-mRNA-1:exon:10997;Parent=Msa0683050-mRNA-1 |
| chr4_4 | exon | 45396635 | 45396695 | 45396635 | ID=Msa0683050-mRNA-1:exon:10998;Parent=Msa0683050-mRNA-1 |
| chr4_4 | exon | 45397543 | 45398436 | 45397543 | ID=Msa0683050-mRNA-1:exon:10999;Parent=Msa0683050-mRNA-1 |
| chr4_4 | exon | 45399209 | 45399407 | 45399209 | ID=Msa0683050-mRNA-1:exon:11000;Parent=Msa0683050-mRNA-1 |
| chr4_4 | exon | 45399534 | 45399719 | 45399534 | ID=Msa0683050-mRNA-1:exon:11001;Parent=Msa0683050-mRNA-1 |
| chr4_4 | exon | 45399843 | 45400219 | 45399843 | ID=Msa0683050-mRNA-1:exon:11002;Parent=Msa0683050-mRNA-1 |
| chr4_4 | exon | 45400387 | 45400872 | 45400387 | ID=Msa0683050-mRNA-1:exon:11003;Parent=Msa0683050-mRNA-1 |
| chr4_4 | five_prime_UTR | 45396261 | 45396370 | 45396261 | ID=Msa0683050-mRNA-1:five_prime_utr;Parent=Msa0683050-mRNA-1 |
| chr4_4 | CDS | 45396371 | 45396540 | 45396371 | ID=Msa0683050-mRNA-1:cds;Parent=Msa0683050-mRNA-1 |
| chr4_4 | CDS | 45396635 | 45396695 | 45396635 | ID=Msa0683050-mRNA-1:cds;Parent=Msa0683050-mRNA-1 |
| chr4_4 | CDS | 45397543 | 45398436 | 45397543 | ID=Msa0683050-mRNA-1:cds;Parent=Msa0683050-mRNA-1 |
| chr4_4 | CDS | 45399209 | 45399407 | 45399209 | ID=Msa0683050-mRNA-1:cds;Parent=Msa0683050-mRNA-1 |
| chr4_4 | CDS | 45399534 | 45399719 | 45399534 | ID=Msa0683050-mRNA-1:cds;Parent=Msa0683050-mRNA-1 |
| chr4_4 | CDS | 45399843 | 45400219 | 45399843 | ID=Msa0683050-mRNA-1:cds;Parent=Msa0683050-mRNA-1 |
| chr4_4 | CDS | 45400387 | 45400527 | 45400387 | ID=Msa0683050-mRNA-1:cds;Parent=Msa0683050-mRNA-1 |
| chr4_4 | three_prime_UTR | 45400528 | 45400872 | 45400528 | ID=Msa0683050-mRNA-1:three_prime_utr;Parent=Msa0683050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
