Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644310 | XP_013456116.1 | 97.987 | 447 | 9 | 0 | 1 | 447 | 1 | 447 | 0.0 | 909 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644310 | sp|Q94B55|XB31_ARATH | 67.834 | 457 | 133 | 5 | 1 | 446 | 1 | 454 | 0.0 | 626 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644310 | A0A072UKA7 | 97.987 | 447 | 9 | 0 | 1 | 447 | 1 | 447 | 0.0 | 909 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0603290 | Msa0644310 | 0.920807 | 8.014945e-88 | -8.615850e-47 |
| Msa0644310 | Msa0684110 | 0.874345 | 7.261019e-68 | -8.615850e-47 |
| Msa0548350 | Msa0644310 | 0.905096 | 6.155292e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644310 | MtrunA17_Chr4g0031491 | 97.987 | 447 | 9 | 0 | 1 | 447 | 1 | 447 | 0.0 | 909 |
| Msa0644310 | MtrunA17_Chr2g0328031 | 74.944 | 447 | 106 | 5 | 1 | 445 | 1 | 443 | 0.0 | 692 |
| Msa0644310 | MtrunA17_Chr4g0010051 | 59.911 | 449 | 166 | 6 | 1 | 440 | 1 | 444 | 4.72e-180 | 510 |
| Msa0644310 | MtrunA17_Chr6g0472461 | 33.499 | 403 | 206 | 13 | 1 | 372 | 1 | 372 | 6.41e-46 | 166 |
| Msa0644310 | MtrunA17_Chr4g0073161 | 30.303 | 396 | 221 | 9 | 6 | 376 | 11 | 376 | 1.11e-37 | 143 |
| Msa0644310 | MtrunA17_Chr1g0203651 | 28.859 | 298 | 160 | 11 | 89 | 376 | 1 | 256 | 4.97e-21 | 94.7 |
| Msa0644310 | MtrunA17_Chr1g0212971 | 31.731 | 208 | 121 | 8 | 13 | 216 | 132 | 322 | 2.86e-16 | 81.3 |
| Msa0644310 | MtrunA17_Chr7g0263421 | 30.000 | 210 | 126 | 6 | 11 | 216 | 48 | 240 | 1.11e-15 | 79.3 |
| Msa0644310 | MtrunA17_Chr7g0276681 | 30.603 | 232 | 139 | 6 | 13 | 239 | 82 | 296 | 9.48e-15 | 76.3 |
| Msa0644310 | MtrunA17_Chr1g0211241 | 26.383 | 235 | 153 | 5 | 1 | 232 | 124 | 341 | 2.36e-14 | 75.5 |
| Msa0644310 | MtrunA17_Chr2g0327711 | 28.019 | 207 | 130 | 5 | 13 | 216 | 67 | 257 | 5.12e-14 | 73.9 |
| Msa0644310 | MtrunA17_Chr5g0418551 | 31.818 | 220 | 130 | 4 | 13 | 229 | 20 | 222 | 7.42e-14 | 71.2 |
| Msa0644310 | MtrunA17_Chr2g0293861 | 32.075 | 159 | 92 | 6 | 26 | 179 | 10 | 157 | 2.84e-13 | 68.9 |
| Msa0644310 | MtrunA17_Chr4g0030551 | 23.263 | 331 | 222 | 8 | 13 | 330 | 71 | 382 | 1.72e-12 | 69.3 |
| Msa0644310 | MtrunA17_Chr6g0461061 | 29.000 | 200 | 126 | 4 | 51 | 250 | 181 | 364 | 1.07e-11 | 67.0 |
| Msa0644310 | MtrunA17_Chr5g0439191 | 31.818 | 132 | 81 | 3 | 50 | 179 | 8 | 132 | 1.51e-11 | 63.2 |
| Msa0644310 | MtrunA17_Chr7g0274241 | 27.076 | 277 | 165 | 8 | 51 | 296 | 59 | 329 | 4.73e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644310 | AT2G28840.1 | 67.834 | 457 | 133 | 5 | 1 | 446 | 1 | 454 | 0.0 | 626 |
| Msa0644310 | AT2G28840.2 | 69.948 | 386 | 103 | 4 | 72 | 446 | 57 | 440 | 0.0 | 551 |
| Msa0644310 | AT5G07270.1 | 31.707 | 410 | 229 | 10 | 1 | 388 | 1 | 381 | 3.01e-43 | 159 |
| Msa0644310 | AT5G57740.1 | 29.695 | 394 | 221 | 10 | 6 | 372 | 11 | 375 | 1.06e-31 | 127 |
| Msa0644310 | AT5G02620.4 | 27.381 | 336 | 200 | 12 | 11 | 328 | 55 | 364 | 2.05e-19 | 91.3 |
| Msa0644310 | AT5G02620.1 | 27.381 | 336 | 200 | 12 | 11 | 328 | 55 | 364 | 2.05e-19 | 91.3 |
| Msa0644310 | AT5G02620.3 | 27.381 | 336 | 200 | 12 | 11 | 328 | 55 | 364 | 2.05e-19 | 91.3 |
| Msa0644310 | AT5G60070.1 | 26.786 | 336 | 207 | 12 | 13 | 330 | 74 | 388 | 3.21e-18 | 87.4 |
| Msa0644310 | AT5G60070.1 | 28.436 | 211 | 126 | 5 | 16 | 216 | 36 | 231 | 7.20e-13 | 70.9 |
| Msa0644310 | AT5G02620.5 | 30.583 | 206 | 122 | 5 | 11 | 212 | 55 | 243 | 8.55e-18 | 86.3 |
| Msa0644310 | AT5G02620.2 | 30.583 | 206 | 122 | 5 | 11 | 212 | 55 | 243 | 8.55e-18 | 86.3 |
| Msa0644310 | AT3G12360.1 | 31.674 | 221 | 127 | 10 | 13 | 226 | 130 | 333 | 1.74e-15 | 79.3 |
| Msa0644310 | AT3G12360.2 | 31.674 | 221 | 127 | 10 | 13 | 226 | 118 | 321 | 1.85e-15 | 79.0 |
| Msa0644310 | AT1G07710.2 | 26.409 | 337 | 207 | 12 | 11 | 330 | 65 | 377 | 6.61e-15 | 77.4 |
| Msa0644310 | AT1G07710.1 | 26.409 | 337 | 207 | 12 | 11 | 330 | 65 | 377 | 6.61e-15 | 77.4 |
| Msa0644310 | AT5G20350.1 | 26.613 | 248 | 159 | 6 | 7 | 248 | 22 | 252 | 2.11e-14 | 75.9 |
| Msa0644310 | AT3G04710.1 | 32.093 | 215 | 103 | 6 | 51 | 236 | 59 | 259 | 2.49e-14 | 75.1 |
| Msa0644310 | AT3G04710.3 | 28.625 | 269 | 138 | 8 | 51 | 290 | 283 | 526 | 3.97e-14 | 75.1 |
| Msa0644310 | AT3G04710.2 | 28.625 | 269 | 137 | 7 | 51 | 290 | 59 | 301 | 1.84e-13 | 72.4 |
| Msa0644310 | AT5G13530.1 | 25.592 | 211 | 133 | 5 | 16 | 216 | 472 | 668 | 1.98e-12 | 70.1 |
| Msa0644310 | AT5G13530.2 | 25.592 | 211 | 133 | 5 | 16 | 216 | 472 | 668 | 2.00e-12 | 70.1 |
| Msa0644310 | AT2G31820.1 | 26.749 | 243 | 162 | 6 | 13 | 253 | 190 | 418 | 3.37e-12 | 68.9 |
| Msa0644310 | AT3G24530.1 | 32.895 | 152 | 88 | 4 | 23 | 169 | 26 | 168 | 5.81e-12 | 67.8 |
Find 125 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTAGAGCAGGCCTTAT+TGG | 0.254482 | 4_3:+48094789 | Msa0644310:CDS |
| GGAAAGGCATGGCCTATTAT+TGG | 0.282536 | 4_3:+48096327 | Msa0644310:three_prime_UTR |
| CTAGTCCCGTGGCTGCTTCT+TGG | 0.292776 | 4_3:+48093615 | Msa0644310:CDS |
| AAAATGAGCGGCCGTAGTTC+CGG | 0.300237 | 4_3:+48095950 | Msa0644310:CDS |
| TGTGCTTCAACTAGCAGATA+TGG | 0.305279 | 4_3:+48093867 | Msa0644310:CDS |
| TTCCCTGTTCGCGTCCAATA+AGG | 0.329855 | 4_3:-48094803 | None:intergenic |
| CGTCTCCAACGTGATGCATC+TGG | 0.332475 | 4_3:+48094078 | Msa0644310:CDS |
| TGGTCATTCTTCTTGCCTTA+AGG | 0.368140 | 4_3:+48093571 | Msa0644310:CDS |
| AGGCCTTATTGGACGCGAAC+AGG | 0.370869 | 4_3:+48094800 | Msa0644310:CDS |
| GATAACCATCAGTTTAGATA+TGG | 0.374202 | 4_3:-48095786 | None:intergenic |
| TGTGGAGATGGAAGAGAGTA+AGG | 0.374735 | 4_3:-48094853 | None:intergenic |
| AAATGAGCGGCCGTAGTTCC+GGG | 0.375798 | 4_3:+48095951 | Msa0644310:CDS |
| ATCACATGACAACCAATAAT+AGG | 0.376232 | 4_3:-48096339 | None:intergenic |
| CGAAATTTCCTTGATTTGCT+TGG | 0.378282 | 4_3:-48095866 | None:intergenic |
| CATCTGCACAGCCTCTTGTA+TGG | 0.385282 | 4_3:+48094719 | Msa0644310:CDS |
| TTGCATTATGCTGCTTACTA+TGG | 0.392266 | 4_3:+48093551 | Msa0644310:CDS |
| TACTTCAAAGCAACCACATA+TGG | 0.395193 | 4_3:-48094661 | None:intergenic |
| AACAGAATGTGCACACATTC+AGG | 0.420204 | 4_3:-48093825 | None:intergenic |
| TTGTCCAATGTAAATTCATT+CGG | 0.426931 | 4_3:+48095926 | Msa0644310:CDS |
| CCTCTTCATTTAGCAGCTAA+AGG | 0.427567 | 4_3:+48094009 | Msa0644310:CDS |
| CTGATTATCTTCAATGATGA+AGG | 0.436165 | 4_3:-48094742 | None:intergenic |
| GGGTAGCAGCAGCAGTTTCA+AGG | 0.445286 | 4_3:+48095901 | Msa0644310:CDS |
| AGAGAGAAAAGAAGGGAGGG+AGG | 0.447791 | 4_3:-48092652 | None:intergenic |
| AGGTGCTACACCATTGCATC+TGG | 0.451079 | 4_3:+48093785 | Msa0644310:CDS |
| TGATTGCTTCCGAAAATGAA+TGG | 0.451396 | 4_3:+48095975 | Msa0644310:CDS |
| ACATCTGGTGGCCACAGTCT+TGG | 0.456216 | 4_3:-48095670 | None:intergenic |
| TCTAATAAAACTTTAGCCTC+TGG | 0.458151 | 4_3:-48094775 | None:intergenic |
| TGCTATATTTGCAGATGTCC+TGG | 0.458321 | 4_3:+48093979 | Msa0644310:intron |
| ATCTAAACTGATGGTTATCA+AGG | 0.465152 | 4_3:+48095790 | Msa0644310:CDS |
| GAGAGAGAGAAAAGAAGGGA+GGG | 0.467404 | 4_3:-48092655 | None:intergenic |
| GTGTGCATTGTGCACACATC+TGG | 0.471356 | 4_3:-48095685 | None:intergenic |
| GATATGGCGCTTCGACAGAA+TGG | 0.471448 | 4_3:-48095770 | None:intergenic |
| AATGAGCAATAAAATAAGAA+AGG | 0.473754 | 4_3:+48096305 | Msa0644310:three_prime_UTR |
| GTTTCAAGCCAAGCAAATCA+AGG | 0.478084 | 4_3:+48095858 | Msa0644310:CDS |
| GTGCTTCAACTAGCAGATAT+GGG | 0.478560 | 4_3:+48093868 | Msa0644310:CDS |
| GAGAGAAAAGAAGGGAGGGA+GGG | 0.484354 | 4_3:-48092651 | None:intergenic |
| CTTCATATTGCTGCTGCCAA+TGG | 0.485862 | 4_3:+48092907 | Msa0644310:CDS |
| TATTGGACGCGAACAGGGAA+AGG | 0.487813 | 4_3:+48094806 | Msa0644310:CDS |
| TGCTGCCAATGGTCAGATCC+AGG | 0.493489 | 4_3:+48092918 | Msa0644310:CDS |
| TGCATTGCTGCCAACATAAG+TGG | 0.493653 | 4_3:-48093352 | None:intergenic |
| CAGCAGAAAGTATTGCCTTA+AGG | 0.496959 | 4_3:-48093586 | None:intergenic |
| GGTAGCAGCAGCAGTTTCAA+GGG | 0.499150 | 4_3:+48095902 | Msa0644310:CDS |
| GCTATATTTGCAGATGTCCT+GGG | 0.514636 | 4_3:+48093980 | Msa0644310:intron |
| CATCCGCGAATTATTAGCAT+GGG | 0.514704 | 4_3:+48094047 | Msa0644310:CDS |
| CTCTTTCGTGCTGTTCAACA+TGG | 0.515412 | 4_3:+48092802 | Msa0644310:CDS |
| TTGATTTGAAAACGTGGAGA+AGG | 0.515471 | 4_3:+48092734 | Msa0644310:five_prime_UTR |
| TGTGTTGAATCGACAAAAGC+AGG | 0.516759 | 4_3:+48093202 | Msa0644310:CDS |
| AGAGAGAGAGAAAAGAAGGG+AGG | 0.518407 | 4_3:-48092656 | None:intergenic |
| ATCTCCACACTCTGATCGAA+TGG | 0.518796 | 4_3:+48094867 | Msa0644310:CDS |
| ATGCAGGCGGATACCATATG+TGG | 0.519878 | 4_3:+48094648 | Msa0644310:intron |
| ATGAGCAATAAAATAAGAAA+GGG | 0.522122 | 4_3:+48096306 | Msa0644310:three_prime_UTR |
| GTCTCCAACGTGATGCATCT+GGG | 0.525701 | 4_3:+48094079 | Msa0644310:CDS |
| AATGGACAGATGGGTGGGGT+GGG | 0.525799 | 4_3:-48095752 | None:intergenic |
| AGCAGTTATTCAGACTAACT+TGG | 0.526064 | 4_3:-48092587 | None:intergenic |
| ATGCTGCATCTGCTTTGAGC+AGG | 0.528277 | 4_3:+48095631 | Msa0644310:CDS |
| GACAGAATGGACAGATGGGT+GGG | 0.529180 | 4_3:-48095757 | None:intergenic |
| TTTGAAAACGTGGAGAAGGA+TGG | 0.530704 | 4_3:+48092738 | Msa0644310:exon |
| AGGGAGGGACAGTGTCACAT+AGG | 0.531010 | 4_3:-48092636 | None:intergenic |
| CACCCCATGCTAATAATTCG+CGG | 0.532650 | 4_3:-48094050 | None:intergenic |
| ATTCGATCAGAGTGTGGAGA+TGG | 0.534607 | 4_3:-48094865 | None:intergenic |
| GAATGGACAGATGGGTGGGG+TGG | 0.536558 | 4_3:-48095753 | None:intergenic |
| GTAGTACGATTGAGAAGAGA+AGG | 0.541763 | 4_3:-48092862 | None:intergenic |
| AATTCAGACCCCACTTATGT+TGG | 0.543384 | 4_3:+48093342 | Msa0644310:intron |
| CTTATGTTGGCAGCAATGCA+TGG | 0.544992 | 4_3:+48093355 | Msa0644310:CDS |
| CAAAGTGGTCTTAGTTGTAG+AGG | 0.545298 | 4_3:+48092763 | Msa0644310:CDS |
| CCTTTAGCTGCTAAATGAAG+AGG | 0.547668 | 4_3:-48094009 | None:intergenic |
| GACTAACCAAGAAGCAGCCA+CGG | 0.550497 | 4_3:-48093621 | None:intergenic |
| GATTGCTTCCGAAAATGAAT+GGG | 0.551989 | 4_3:+48095976 | Msa0644310:CDS |
| GCATTGCTGCCAACATAAGT+GGG | 0.556318 | 4_3:-48093351 | None:intergenic |
| AAGCAATCATCCCGGAACTA+CGG | 0.559960 | 4_3:-48095961 | None:intergenic |
| GGCCTTATTGGACGCGAACA+GGG | 0.567914 | 4_3:+48094801 | Msa0644310:CDS |
| CAATCAAATGATAATAAATG+TGG | 0.568505 | 4_3:+48092706 | Msa0644310:five_prime_UTR |
| TATTCAGACTAACTTGGCTG+TGG | 0.570278 | 4_3:-48092581 | None:intergenic |
| GTGAATATTAGAGACGGTAG+AGG | 0.570533 | 4_3:+48093765 | Msa0644310:CDS |
| GTGGAAAAGTTGCTTGAAGC+TGG | 0.573507 | 4_3:+48093391 | Msa0644310:CDS |
| TTGAAAACGTGGAGAAGGAT+GGG | 0.574196 | 4_3:+48092739 | Msa0644310:exon |
| CAATAAAATAAGAAAGGGAA+AGG | 0.577041 | 4_3:+48096311 | Msa0644310:three_prime_UTR |
| ATTGGACGCGAACAGGGAAA+GGG | 0.577168 | 4_3:+48094807 | Msa0644310:CDS |
| TTAATGTTTGATGTGTGTCA+TGG | 0.578777 | 4_3:+48093518 | Msa0644310:CDS |
| GCTTCGACAGAATGGACAGA+TGG | 0.579479 | 4_3:-48095762 | None:intergenic |
| ACAGAATGGACAGATGGGTG+GGG | 0.584465 | 4_3:-48095756 | None:intergenic |
| TTGAACCTGGATCTGACCAT+TGG | 0.585236 | 4_3:-48092923 | None:intergenic |
| GGTAGAAACTCACGAAGACA+TGG | 0.587372 | 4_3:+48095811 | Msa0644310:CDS |
| TGGCAGCAGCAATATGAAGA+GGG | 0.588977 | 4_3:-48092903 | None:intergenic |
| CGACAGAATGGACAGATGGG+TGG | 0.592181 | 4_3:-48095758 | None:intergenic |
| ATCTGGCAGCTCGTCAAAGA+CGG | 0.594811 | 4_3:+48093802 | Msa0644310:CDS |
| AGACTAACTTGGCTGTGGCA+TGG | 0.597086 | 4_3:-48092576 | None:intergenic |
| AAGCGCCATATCTAAACTGA+TGG | 0.601000 | 4_3:+48095781 | Msa0644310:CDS |
| TGACGAGCTGCCAGATGCAA+TGG | 0.602034 | 4_3:-48093795 | None:intergenic |
| GTGCACATTCTGTTGTGTAG+TGG | 0.607255 | 4_3:+48093834 | Msa0644310:CDS |
| TGCTGCTCAATCTAGTCCCG+TGG | 0.608978 | 4_3:+48093604 | Msa0644310:CDS |
| TGGCATCAATCAGATTCTTG+TGG | 0.609115 | 4_3:-48092556 | None:intergenic |
| GCAACTATGCTTGATAAGCA+AGG | 0.609839 | 4_3:+48096069 | Msa0644310:three_prime_UTR |
| GCATGGAAAGATTGAATGTG+TGG | 0.610223 | 4_3:+48093372 | Msa0644310:CDS |
| GCATCCGCGAATTATTAGCA+TGG | 0.610332 | 4_3:+48094046 | Msa0644310:CDS |
| CGAATTATTAGCATGGGGTG+CGG | 0.613204 | 4_3:+48094053 | Msa0644310:CDS |
| GGGATGCGAAGTTGAAGTGT+TGG | 0.613230 | 4_3:-48095732 | None:intergenic |
| CTTCATTTAGCAGCTAAAGG+AGG | 0.613756 | 4_3:+48094012 | Msa0644310:CDS |
| AAATGAAGAGGAGTACTCCC+AGG | 0.616255 | 4_3:-48093997 | None:intergenic |
| CTTCGACAGAATGGACAGAT+GGG | 0.616676 | 4_3:-48095761 | None:intergenic |
| TTGGCAGCAGCAATATGAAG+AGG | 0.619663 | 4_3:-48092904 | None:intergenic |
| AACAGGTGTCGACGTCATTG+TGG | 0.621894 | 4_3:-48096010 | None:intergenic |
| ACTAACCAAGAAGCAGCCAC+GGG | 0.627620 | 4_3:-48093620 | None:intergenic |
| AACACTCTGCTGTCACAACA+AGG | 0.631175 | 4_3:+48095709 | Msa0644310:CDS |
| AAATAAGAAAGGGAAAGGCA+TGG | 0.635946 | 4_3:+48096316 | Msa0644310:three_prime_UTR |
| AATGATGAAGGCCATACAAG+AGG | 0.639552 | 4_3:-48094730 | None:intergenic |
| TGTAGAGGTAGTCATGAACA+TGG | 0.643863 | 4_3:+48092778 | Msa0644310:CDS |
| CGGTTTGTGAATATTAGAGA+CGG | 0.645981 | 4_3:+48093759 | Msa0644310:CDS |
| TCATCCATTCGATCAGAGTG+TGG | 0.646169 | 4_3:-48094871 | None:intergenic |
| TGCATTGTGCACACATCTGG+TGG | 0.649232 | 4_3:-48095682 | None:intergenic |
| TAGTACGATTGAGAAGAGAA+GGG | 0.656985 | 4_3:-48092861 | None:intergenic |
| TGGAGAAGGATGGGTCAAAG+TGG | 0.658025 | 4_3:+48092748 | Msa0644310:exon |
| AATCAGTGAACTTAATCCAG+AGG | 0.659408 | 4_3:+48094759 | Msa0644310:CDS |
| GGCAGCAGCAATATGAAGAG+GGG | 0.664522 | 4_3:-48092902 | None:intergenic |
| CACGAAGACATGGATCTAGA+CGG | 0.665249 | 4_3:+48095821 | Msa0644310:CDS |
| TTTGCTTGGCTTGAAACAAG+TGG | 0.668168 | 4_3:-48095852 | None:intergenic |
| TGTACCCAGATGCATCACGT+TGG | 0.686205 | 4_3:-48094083 | None:intergenic |
| ATCCGCGAATTATTAGCATG+GGG | 0.692205 | 4_3:+48094048 | Msa0644310:CDS |
| GTTGCTTTGAAGTACAAACA+TGG | 0.699828 | 4_3:+48094670 | Msa0644310:CDS |
| AAATTTCGTAACATGAACGA+GGG | 0.699839 | 4_3:+48095881 | Msa0644310:CDS |
| GAAATTTCGTAACATGAACG+AGG | 0.700659 | 4_3:+48095880 | Msa0644310:CDS |
| GAAACTTTGATTTGAAAACG+TGG | 0.708844 | 4_3:+48092728 | Msa0644310:five_prime_UTR |
| CATTGCTGCCAACATAAGTG+GGG | 0.709787 | 4_3:-48093350 | None:intergenic |
| AATGGATGACAATATCTCTG+AGG | 0.711499 | 4_3:+48094885 | Msa0644310:CDS |
| ACAATTGTAGTCCAAGACTG+TGG | 0.728905 | 4_3:+48095659 | Msa0644310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTGAATTTTGATTTTAA+TGG | + | chr4_3:48093239-48093258 | Msa0644310:intron | 10.0% |
| !!! | TATCTTTAATTGTATTTTTT+TGG | + | chr4_3:48093316-48093335 | Msa0644310:intron | 10.0% |
| !! | AATAATTATGAAAAATTATC+AGG | + | chr4_3:48093493-48093512 | Msa0644310:intron | 10.0% |
| !! | TATAAATTTAATAAGTTTGT+AGG | - | chr4_3:48095000-48095019 | None:intergenic | 10.0% |
| !! | TCATAAAATTGAAATAAACA+TGG | - | chr4_3:48093441-48093460 | None:intergenic | 15.0% |
| !!! | GATTTTAAAACATTTAACAA+TGG | + | chr4_3:48093704-48093723 | Msa0644310:intron | 15.0% |
| !! | AAATATGTAAACCTATTATT+TGG | + | chr4_3:48094375-48094394 | Msa0644310:intron | 15.0% |
| !!! | GATTATATTTTTCAAATTGT+AGG | - | chr4_3:48094444-48094463 | None:intergenic | 15.0% |
| !! | AAAAATATAATCACTTGTTT+CGG | + | chr4_3:48094452-48094471 | Msa0644310:intron | 15.0% |
| !! | AAACTTATTAAATTTATAGC+AGG | + | chr4_3:48095002-48095021 | Msa0644310:intron | 15.0% |
| !!! | CTAATTATTTGGATATTTTT+CGG | + | chr4_3:48095029-48095048 | Msa0644310:intron | 15.0% |
| !!! | AAGAATTTTCTCAAATTTAA+TGG | - | chr4_3:48096206-48096225 | None:intergenic | 15.0% |
| !! | CAATCAAATGATAATAAATG+TGG | + | chr4_3:48092706-48092725 | Msa0644310:five_prime_UTR | 20.0% |
| !! | AAAATTTCAAAACCCAATTA+GGG | - | chr4_3:48093090-48093109 | None:intergenic | 20.0% |
| !! | AAAAATTTCAAAACCCAATT+AGG | - | chr4_3:48093091-48093110 | None:intergenic | 20.0% |
| !! | AAAATTGAAATAAACATGGA+GGG | - | chr4_3:48093437-48093456 | None:intergenic | 20.0% |
| !! | TAAAATTGAAATAAACATGG+AGG | - | chr4_3:48093438-48093457 | None:intergenic | 20.0% |
| !! | TCATTAATTTCTTTCCTAAT+TGG | + | chr4_3:48093657-48093676 | Msa0644310:intron | 20.0% |
| !! | AAGAATACAATTATATTGCA+GGG | + | chr4_3:48093728-48093747 | Msa0644310:intron | 20.0% |
| !!! | TGTTTGCTATTTTTCAATTT+AGG | + | chr4_3:48094497-48094516 | Msa0644310:intron | 20.0% |
| !! | TTTAACTGATCAAAATTAGA+AGG | - | chr4_3:48095096-48095115 | None:intergenic | 20.0% |
| !! | GGTAAAATGAAAGTAAAAAA+AGG | + | chr4_3:48096090-48096109 | Msa0644310:three_prime_UTR | 20.0% |
| !!! | TTCTTTTTTCTCATTAGTTA+AGG | + | chr4_3:48096221-48096240 | Msa0644310:three_prime_UTR | 20.0% |
| !!! | TACACAATACATTTTCTTTA+TGG | - | chr4_3:48096256-48096275 | None:intergenic | 20.0% |
| !! | AATGAGCAATAAAATAAGAA+AGG | + | chr4_3:48096305-48096324 | Msa0644310:three_prime_UTR | 20.0% |
| !! | ATGAGCAATAAAATAAGAAA+GGG | + | chr4_3:48096306-48096325 | Msa0644310:three_prime_UTR | 20.0% |
| ! | ACACGAAAAAAGAATGTAAA+GGG | - | chr4_3:48092955-48092974 | None:intergenic | 25.0% |
| ! | AACACGAAAAAAGAATGTAA+AGG | - | chr4_3:48092956-48092975 | None:intergenic | 25.0% |
| ! | TTATTATGAAACGTCTTAGA+TGG | + | chr4_3:48093038-48093057 | Msa0644310:intron | 25.0% |
| ! | TATTATGAAACGTCTTAGAT+GGG | + | chr4_3:48093039-48093058 | Msa0644310:intron | 25.0% |
| !!! | TTTTTTTTTTGGGAATTTGC+AGG | + | chr4_3:48093142-48093161 | Msa0644310:intron | 25.0% |
| !! | GTTTTATCTAAGCTTTTAGA+TGG | + | chr4_3:48093164-48093183 | Msa0644310:CDS | 25.0% |
| ! | AATTAATGACAAAACCGAAA+AGG | - | chr4_3:48093646-48093665 | None:intergenic | 25.0% |
| ! | CAAGAATACAATTATATTGC+AGG | + | chr4_3:48093727-48093746 | Msa0644310:intron | 25.0% |
| ! | AGAATACAATTATATTGCAG+GGG | + | chr4_3:48093729-48093748 | Msa0644310:intron | 25.0% |
| !!! | TGTTGAATCATTTTGTTTTG+TGG | + | chr4_3:48093946-48093965 | Msa0644310:intron | 25.0% |
| ! | TTGTATGATCTATCAATTGT+GGG | - | chr4_3:48094357-48094376 | None:intergenic | 25.0% |
| ! | TTTGTATGATCTATCAATTG+TGG | - | chr4_3:48094358-48094377 | None:intergenic | 25.0% |
| ! | TACAACTAATGCCAAATAAT+AGG | - | chr4_3:48094389-48094408 | None:intergenic | 25.0% |
| ! | AGTTGTAGTAGTAAAATGTA+AGG | + | chr4_3:48094402-48094421 | Msa0644310:intron | 25.0% |
| ! | GAATCATAACAATGTTTCTT+GGG | - | chr4_3:48094534-48094553 | None:intergenic | 25.0% |
| ! | TGAATCATAACAATGTTTCT+TGG | - | chr4_3:48094535-48094554 | None:intergenic | 25.0% |
| ! | ACTTGAAAGTTGAATAAAAC+AGG | - | chr4_3:48094590-48094609 | None:intergenic | 25.0% |
| ! | AAGTAGTAAATTCAAATGGT+TGG | - | chr4_3:48094936-48094955 | None:intergenic | 25.0% |
| ! | AGCAAAGTAGTAAATTCAAA+TGG | - | chr4_3:48094940-48094959 | None:intergenic | 25.0% |
| ! | GAATTTACTACTTTGCTTAT+AGG | + | chr4_3:48094943-48094962 | Msa0644310:intron | 25.0% |
| !! | AAAGAGATGATAGTTTTCTA+AGG | - | chr4_3:48095249-48095268 | None:intergenic | 25.0% |
| !!! | TCCATTATACATTCACTTTT+GGG | + | chr4_3:48095442-48095461 | Msa0644310:intron | 25.0% |
| ! | TTGTCCAATGTAAATTCATT+CGG | + | chr4_3:48095926-48095945 | Msa0644310:CDS | 25.0% |
| !! | TTTTCCGAATGAATTTACAT+TGG | - | chr4_3:48095933-48095952 | None:intergenic | 25.0% |
| ! | CAATAAAATAAGAAAGGGAA+AGG | + | chr4_3:48096311-48096330 | Msa0644310:three_prime_UTR | 25.0% |
| !! | GAAACTTTGATTTGAAAACG+TGG | + | chr4_3:48092728-48092747 | Msa0644310:five_prime_UTR | 30.0% |
| ! | AAAGAGTAGAAACAGTTTTC+AGG | - | chr4_3:48092831-48092850 | None:intergenic | 30.0% |
| TTAATGTTTGATGTGTGTCA+TGG | + | chr4_3:48093518-48093537 | Msa0644310:CDS | 30.0% | |
| ! | CTTTCCTAATTGGTTCATAT+CGG | + | chr4_3:48093667-48093686 | Msa0644310:intron | 30.0% |
| GAATACAATTATATTGCAGG+GGG | + | chr4_3:48093730-48093749 | Msa0644310:intron | 30.0% | |
| ACTGTATCATCTCAAGTTAA+CGG | - | chr4_3:48094226-48094245 | None:intergenic | 30.0% | |
| AAAATGTAAGGAAGTCTCTA+AGG | + | chr4_3:48094414-48094433 | Msa0644310:intron | 30.0% | |
| ATATAATCACTTGTTTCGGT+AGG | + | chr4_3:48094456-48094475 | Msa0644310:intron | 30.0% | |
| AAACAAGAACACAATAGGAA+AGG | - | chr4_3:48094482-48094501 | None:intergenic | 30.0% | |
| ATAGCAAACAAGAACACAAT+AGG | - | chr4_3:48094487-48094506 | None:intergenic | 30.0% | |
| TAACAATGTTTCTTGGGATA+AGG | - | chr4_3:48094528-48094547 | None:intergenic | 30.0% | |
| CTGATTATCTTCAATGATGA+AGG | - | chr4_3:48094745-48094764 | None:intergenic | 30.0% | |
| TCTAATAAAACTTTAGCCTC+TGG | - | chr4_3:48094778-48094797 | None:intergenic | 30.0% | |
| AGGGAGAAAAACATATTGAA+AGG | + | chr4_3:48094826-48094845 | Msa0644310:CDS | 30.0% | |
| !! | ATGGTTGGTAAGAAATCAAA+GGG | - | chr4_3:48094921-48094940 | None:intergenic | 30.0% |
| !! | AATGGTTGGTAAGAAATCAA+AGG | - | chr4_3:48094922-48094941 | None:intergenic | 30.0% |
| TAGCAGGAAGTCTAATTATT+TGG | + | chr4_3:48095018-48095037 | Msa0644310:intron | 30.0% | |
| ! | GTCCATTATACATTCACTTT+TGG | + | chr4_3:48095441-48095460 | Msa0644310:intron | 30.0% |
| !! | CCATTATACATTCACTTTTG+GGG | + | chr4_3:48095443-48095462 | Msa0644310:intron | 30.0% |
| TACAGCAATGCAAATGTAAA+GGG | - | chr4_3:48095510-48095529 | None:intergenic | 30.0% | |
| TTACAGCAATGCAAATGTAA+AGG | - | chr4_3:48095511-48095530 | None:intergenic | 30.0% | |
| !! | TGAAGATTTTTATTTCTCGC+TGG | - | chr4_3:48095538-48095557 | None:intergenic | 30.0% |
| ! | CGAGATCTAATGTAATTTTC+AGG | + | chr4_3:48095592-48095611 | Msa0644310:intron | 30.0% |
| GATAACCATCAGTTTAGATA+TGG | - | chr4_3:48095789-48095808 | None:intergenic | 30.0% | |
| ATCTAAACTGATGGTTATCA+AGG | + | chr4_3:48095790-48095809 | Msa0644310:CDS | 30.0% | |
| AAATTTCGTAACATGAACGA+GGG | + | chr4_3:48095881-48095900 | Msa0644310:CDS | 30.0% | |
| AATTCATTCGGAAAAATGAG+CGG | + | chr4_3:48095938-48095957 | Msa0644310:CDS | 30.0% | |
| ! | ATCATCAACCCATTCATTTT+CGG | - | chr4_3:48095987-48096006 | None:intergenic | 30.0% |
| AGCAGTTATTCAGACTAACT+TGG | - | chr4_3:48092590-48092609 | None:intergenic | 35.0% | |
| ! | TTGATTTGAAAACGTGGAGA+AGG | + | chr4_3:48092734-48092753 | Msa0644310:five_prime_UTR | 35.0% |
| TAGTACGATTGAGAAGAGAA+GGG | - | chr4_3:48092864-48092883 | None:intergenic | 35.0% | |
| TAAAGGGAAAAGATTGAACC+TGG | - | chr4_3:48092939-48092958 | None:intergenic | 35.0% | |
| AAAACCCAATTAGGGAACTT+GGG | - | chr4_3:48093082-48093101 | None:intergenic | 35.0% | |
| !!! | TTTTGTCGATTCAACACATC+TGG | - | chr4_3:48093200-48093219 | None:intergenic | 35.0% |
| TGGAAAGAATTGAATGTGTG+TGG | + | chr4_3:48093259-48093278 | Msa0644310:intron | 35.0% | |
| ! | TTGCATTATGCTGCTTACTA+TGG | + | chr4_3:48093551-48093570 | Msa0644310:CDS | 35.0% |
| ATCACCGATATGAACCAATT+AGG | - | chr4_3:48093674-48093693 | None:intergenic | 35.0% | |
| CGGTTTGTGAATATTAGAGA+CGG | + | chr4_3:48093759-48093778 | Msa0644310:CDS | 35.0% | |
| ATTGGTGAGATCTTATCAAG+TGG | - | chr4_3:48094135-48094154 | None:intergenic | 35.0% | |
| ATCTCACCAATGATGATCAA+TGG | + | chr4_3:48094144-48094163 | Msa0644310:intron | 35.0% | |
| CCAAATCCATTGATCATCAT+TGG | - | chr4_3:48094153-48094172 | None:intergenic | 35.0% | |
| ! | CCAATGATGATCAATGGATT+TGG | + | chr4_3:48094150-48094169 | Msa0644310:intron | 35.0% |
| ! | CAATGGATTTGGATTTCCTA+TGG | + | chr4_3:48094161-48094180 | Msa0644310:intron | 35.0% |
| AACTTGAGATTGAACTGTTG+AGG | + | chr4_3:48094292-48094311 | Msa0644310:intron | 35.0% | |
| GATCTATCAATTGTGGGATT+TGG | - | chr4_3:48094351-48094370 | None:intergenic | 35.0% | |
| GCATAAAACACACAGTTTGA+AGG | - | chr4_3:48094632-48094651 | None:intergenic | 35.0% | |
| ! | TCAAACTGTGTGTTTTATGC+AGG | + | chr4_3:48094632-48094651 | Msa0644310:intron | 35.0% |
| TACTTCAAAGCAACCACATA+TGG | - | chr4_3:48094664-48094683 | None:intergenic | 35.0% | |
| !! | GTTGCTTTGAAGTACAAACA+TGG | + | chr4_3:48094670-48094689 | Msa0644310:CDS | 35.0% |
| AATCAGTGAACTTAATCCAG+AGG | + | chr4_3:48094759-48094778 | Msa0644310:CDS | 35.0% | |
| !!! | GGCTAAAGTTTTATTAGAGC+AGG | + | chr4_3:48094780-48094799 | Msa0644310:CDS | 35.0% |
| ! | TTTATTAGAGCAGGCCTTAT+TGG | + | chr4_3:48094789-48094808 | Msa0644310:CDS | 35.0% |
| AATGGATGACAATATCTCTG+AGG | + | chr4_3:48094885-48094904 | Msa0644310:CDS | 35.0% | |
| !! | GACAATATCTCTGAGGTAAT+TGG | + | chr4_3:48094892-48094911 | Msa0644310:intron | 35.0% |
| GGTGCAGTTGAATTGAATTA+TGG | + | chr4_3:48094964-48094983 | Msa0644310:intron | 35.0% | |
| GAGTTTATGCATAATTCGAC+AGG | - | chr4_3:48095119-48095138 | None:intergenic | 35.0% | |
| AACTCTGAGCTATTTGTCTT+TGG | + | chr4_3:48095134-48095153 | Msa0644310:intron | 35.0% | |
| TCTAAGCCTAAAAGGTAAGT+GGG | - | chr4_3:48095195-48095214 | None:intergenic | 35.0% | |
| ATCATCTCTTTACCATCTGT+AGG | + | chr4_3:48095258-48095277 | Msa0644310:intron | 35.0% | |
| CCCCAAAAGTGAATGTATAA+TGG | - | chr4_3:48095446-48095465 | None:intergenic | 35.0% | |
| ACATAGATTACAAGTCAGAG+AGG | - | chr4_3:48095484-48095503 | None:intergenic | 35.0% | |
| CTCGCAATAAGTATATAGTG+TGG | - | chr4_3:48095576-48095595 | None:intergenic | 35.0% | |
| !!! | TAATTTTCAGGTTAGCGAGA+CGG | + | chr4_3:48095604-48095623 | Msa0644310:intron | 35.0% |
| !! | CGAAATTTCCTTGATTTGCT+TGG | - | chr4_3:48095869-48095888 | None:intergenic | 35.0% |
| GAAATTTCGTAACATGAACG+AGG | + | chr4_3:48095880-48095899 | Msa0644310:CDS | 35.0% | |
| TGATTGCTTCCGAAAATGAA+TGG | + | chr4_3:48095975-48095994 | Msa0644310:CDS | 35.0% | |
| GATTGCTTCCGAAAATGAAT+GGG | + | chr4_3:48095976-48095995 | Msa0644310:CDS | 35.0% | |
| AAATAAGAAAGGGAAAGGCA+TGG | + | chr4_3:48096316-48096335 | Msa0644310:three_prime_UTR | 35.0% | |
| TGGCATCAATCAGATTCTTG+TGG | - | chr4_3:48092559-48092578 | None:intergenic | 40.0% | |
| TATTCAGACTAACTTGGCTG+TGG | - | chr4_3:48092584-48092603 | None:intergenic | 40.0% | |
| GAGAGAGAGAGAGAAAAGAA+GGG | - | chr4_3:48092662-48092681 | None:intergenic | 40.0% | |
| AGAGAGAGAGAGAGAAAAGA+AGG | - | chr4_3:48092663-48092682 | None:intergenic | 40.0% | |
| TTTGAAAACGTGGAGAAGGA+TGG | + | chr4_3:48092738-48092757 | Msa0644310:exon | 40.0% | |
| TTGAAAACGTGGAGAAGGAT+GGG | + | chr4_3:48092739-48092758 | Msa0644310:exon | 40.0% | |
| ! | CAAAGTGGTCTTAGTTGTAG+AGG | + | chr4_3:48092763-48092782 | Msa0644310:CDS | 40.0% |
| TGTAGAGGTAGTCATGAACA+TGG | + | chr4_3:48092778-48092797 | Msa0644310:CDS | 40.0% | |
| GTAGTACGATTGAGAAGAGA+AGG | - | chr4_3:48092865-48092884 | None:intergenic | 40.0% | |
| ACTCCGAATTATCAGATGGA+CGG | - | chr4_3:48092985-48093004 | None:intergenic | 40.0% | |
| CTGAACTCCGAATTATCAGA+TGG | - | chr4_3:48092989-48093008 | None:intergenic | 40.0% | |
| CAAAACCCAATTAGGGAACT+TGG | - | chr4_3:48093083-48093102 | None:intergenic | 40.0% | |
| TGTGTTGAATCGACAAAAGC+AGG | + | chr4_3:48093202-48093221 | Msa0644310:CDS | 40.0% | |
| AATTCAGACCCCACTTATGT+TGG | + | chr4_3:48093342-48093361 | Msa0644310:intron | 40.0% | |
| GCATGGAAAGATTGAATGTG+TGG | + | chr4_3:48093372-48093391 | Msa0644310:CDS | 40.0% | |
| TGGTCATTCTTCTTGCCTTA+AGG | + | chr4_3:48093571-48093590 | Msa0644310:CDS | 40.0% | |
| !! | CAGCAGAAAGTATTGCCTTA+AGG | - | chr4_3:48093589-48093608 | None:intergenic | 40.0% |
| !! | GCTTCTTGGTTAGTCCTTTT+CGG | + | chr4_3:48093629-48093648 | Msa0644310:intron | 40.0% |
| GTGAATATTAGAGACGGTAG+AGG | + | chr4_3:48093765-48093784 | Msa0644310:CDS | 40.0% | |
| AACAGAATGTGCACACATTC+AGG | - | chr4_3:48093828-48093847 | None:intergenic | 40.0% | |
| TGTGCTTCAACTAGCAGATA+TGG | + | chr4_3:48093867-48093886 | Msa0644310:CDS | 40.0% | |
| GTGCTTCAACTAGCAGATAT+GGG | + | chr4_3:48093868-48093887 | Msa0644310:CDS | 40.0% | |
| AACGATGAGTCTGATAAGCT+TGG | + | chr4_3:48093911-48093930 | Msa0644310:intron | 40.0% | |
| TGCTATATTTGCAGATGTCC+TGG | + | chr4_3:48093979-48093998 | Msa0644310:intron | 40.0% | |
| GCTATATTTGCAGATGTCCT+GGG | + | chr4_3:48093980-48093999 | Msa0644310:intron | 40.0% | |
| CCTTTAGCTGCTAAATGAAG+AGG | - | chr4_3:48094012-48094031 | None:intergenic | 40.0% | |
| CCTCTTCATTTAGCAGCTAA+AGG | + | chr4_3:48094009-48094028 | Msa0644310:CDS | 40.0% | |
| CTTCATTTAGCAGCTAAAGG+AGG | + | chr4_3:48094012-48094031 | Msa0644310:CDS | 40.0% | |
| CATCCGCGAATTATTAGCAT+GGG | + | chr4_3:48094047-48094066 | Msa0644310:CDS | 40.0% | |
| ATCCGCGAATTATTAGCATG+GGG | + | chr4_3:48094048-48094067 | Msa0644310:CDS | 40.0% | |
| TGGATTTGGATTTCCTATGG+AGG | + | chr4_3:48094164-48094183 | Msa0644310:intron | 40.0% | |
| ! | AACTGTGTGTTTTATGCAGG+CGG | + | chr4_3:48094635-48094654 | Msa0644310:intron | 40.0% |
| AATGATGAAGGCCATACAAG+AGG | - | chr4_3:48094733-48094752 | None:intergenic | 40.0% | |
| CTCTAAGCCTAAAAGGTAAG+TGG | - | chr4_3:48095196-48095215 | None:intergenic | 40.0% | |
| ! | TACCTTTTAGGCTTAGAGCT+CGG | + | chr4_3:48095198-48095217 | Msa0644310:intron | 40.0% |
| !!! | GTTTTCTAAGGTAGCTCGTT+GGG | - | chr4_3:48095237-48095256 | None:intergenic | 40.0% |
| !!! | AGTTTTCTAAGGTAGCTCGT+TGG | - | chr4_3:48095238-48095257 | None:intergenic | 40.0% |
| GGTAACTTCTAACCTACAGA+TGG | - | chr4_3:48095273-48095292 | None:intergenic | 40.0% | |
| ! | CATGATGATGATCGCTTGAT+GGG | - | chr4_3:48095310-48095329 | None:intergenic | 40.0% |
| ! | ACATGATGATGATCGCTTGA+TGG | - | chr4_3:48095311-48095330 | None:intergenic | 40.0% |
| CGATCATCATCATGTCAAAC+AGG | + | chr4_3:48095316-48095335 | Msa0644310:intron | 40.0% | |
| TAGATTACAAGTCAGAGAGG+CGG | - | chr4_3:48095481-48095500 | None:intergenic | 40.0% | |
| ACAATTGTAGTCCAAGACTG+TGG | + | chr4_3:48095659-48095678 | Msa0644310:CDS | 40.0% | |
| AAGCGCCATATCTAAACTGA+TGG | + | chr4_3:48095781-48095800 | Msa0644310:CDS | 40.0% | |
| ! | TTTGCTTGGCTTGAAACAAG+TGG | - | chr4_3:48095855-48095874 | None:intergenic | 40.0% |
| GTTTCAAGCCAAGCAAATCA+AGG | + | chr4_3:48095858-48095877 | Msa0644310:CDS | 40.0% | |
| ! | ATTTTCGGAAGCAATCATCC+CGG | - | chr4_3:48095972-48095991 | None:intergenic | 40.0% |
| CTCATCAGCAAAAACACAAC+AGG | - | chr4_3:48096030-48096049 | None:intergenic | 40.0% | |
| GCAACTATGCTTGATAAGCA+AGG | + | chr4_3:48096069-48096088 | Msa0644310:three_prime_UTR | 40.0% | |
| GAGAGAGAGAAAAGAAGGGA+GGG | - | chr4_3:48092658-48092677 | None:intergenic | 45.0% | |
| AGAGAGAGAGAAAAGAAGGG+AGG | - | chr4_3:48092659-48092678 | None:intergenic | 45.0% | |
| ! | CTCTTTCGTGCTGTTCAACA+TGG | + | chr4_3:48092802-48092821 | Msa0644310:CDS | 45.0% |
| TGGCAGCAGCAATATGAAGA+GGG | - | chr4_3:48092906-48092925 | None:intergenic | 45.0% | |
| TTGGCAGCAGCAATATGAAG+AGG | - | chr4_3:48092907-48092926 | None:intergenic | 45.0% | |
| CTTCATATTGCTGCTGCCAA+TGG | + | chr4_3:48092907-48092926 | Msa0644310:CDS | 45.0% | |
| TTGAACCTGGATCTGACCAT+TGG | - | chr4_3:48092926-48092945 | None:intergenic | 45.0% | |
| CCTCCGTCCATCTGATAATT+CGG | + | chr4_3:48092979-48092998 | Msa0644310:intron | 45.0% | |
| TTAGGGAACTTGGGCTCAAA+TGG | - | chr4_3:48093073-48093092 | None:intergenic | 45.0% | |
| TTGAGCCCAAGTTCCCTAAT+TGG | + | chr4_3:48093074-48093093 | Msa0644310:intron | 45.0% | |
| TGAGCCCAAGTTCCCTAATT+GGG | + | chr4_3:48093075-48093094 | Msa0644310:intron | 45.0% | |
| CATTGCTGCCAACATAAGTG+GGG | - | chr4_3:48093353-48093372 | None:intergenic | 45.0% | |
| GCATTGCTGCCAACATAAGT+GGG | - | chr4_3:48093354-48093373 | None:intergenic | 45.0% | |
| TGCATTGCTGCCAACATAAG+TGG | - | chr4_3:48093355-48093374 | None:intergenic | 45.0% | |
| CTTATGTTGGCAGCAATGCA+TGG | + | chr4_3:48093355-48093374 | Msa0644310:CDS | 45.0% | |
| GTGGAAAAGTTGCTTGAAGC+TGG | + | chr4_3:48093391-48093410 | Msa0644310:CDS | 45.0% | |
| TATATTGCAGGGGGTTTGCA+CGG | + | chr4_3:48093739-48093758 | Msa0644310:intron | 45.0% | |
| GTGCACATTCTGTTGTGTAG+TGG | + | chr4_3:48093834-48093853 | Msa0644310:CDS | 45.0% | |
| !! | AAATGAAGAGGAGTACTCCC+AGG | - | chr4_3:48094000-48094019 | None:intergenic | 45.0% |
| GCATCCGCGAATTATTAGCA+TGG | + | chr4_3:48094046-48094065 | Msa0644310:CDS | 45.0% | |
| CACCCCATGCTAATAATTCG+CGG | - | chr4_3:48094053-48094072 | None:intergenic | 45.0% | |
| CGAATTATTAGCATGGGGTG+CGG | + | chr4_3:48094053-48094072 | Msa0644310:CDS | 45.0% | |
| TGTGGAGATGGAAGAGAGTA+AGG | - | chr4_3:48094856-48094875 | None:intergenic | 45.0% | |
| ATTCGATCAGAGTGTGGAGA+TGG | - | chr4_3:48094868-48094887 | None:intergenic | 45.0% | |
| ATCTCCACACTCTGATCGAA+TGG | + | chr4_3:48094867-48094886 | Msa0644310:CDS | 45.0% | |
| TCATCCATTCGATCAGAGTG+TGG | - | chr4_3:48094874-48094893 | None:intergenic | 45.0% | |
| ! | GTCAAGCCCACTTACCTTTT+AGG | + | chr4_3:48095186-48095205 | Msa0644310:intron | 45.0% |
| ! | ACCTTTTAGGCTTAGAGCTC+GGG | + | chr4_3:48095199-48095218 | Msa0644310:intron | 45.0% |
| GAAGTTACCAATGCGTGTAG+CGG | + | chr4_3:48095284-48095303 | Msa0644310:intron | 45.0% | |
| AACACTCTGCTGTCACAACA+AGG | + | chr4_3:48095709-48095728 | Msa0644310:CDS | 45.0% | |
| CTTCGACAGAATGGACAGAT+GGG | - | chr4_3:48095764-48095783 | None:intergenic | 45.0% | |
| GGTAGAAACTCACGAAGACA+TGG | + | chr4_3:48095811-48095830 | Msa0644310:CDS | 45.0% | |
| CACGAAGACATGGATCTAGA+CGG | + | chr4_3:48095821-48095840 | Msa0644310:CDS | 45.0% | |
| AAGCAATCATCCCGGAACTA+CGG | - | chr4_3:48095964-48095983 | None:intergenic | 45.0% | |
| ! | GGAAAGGCATGGCCTATTAT+TGG | + | chr4_3:48096327-48096346 | Msa0644310:three_prime_UTR | 45.0% |
| !!! | ATTTGATTTTTTTTTTTTTT+TGG | + | chr4_3:48093131-48093150 | Msa0644310:intron | 5.0% |
| !!! | TTTGATTTTTTTTTTTTTTT+GGG | + | chr4_3:48093132-48093151 | Msa0644310:intron | 5.0% |
| AGACTAACTTGGCTGTGGCA+TGG | - | chr4_3:48092579-48092598 | None:intergenic | 50.0% | |
| GAGAGAAAAGAAGGGAGGGA+GGG | - | chr4_3:48092654-48092673 | None:intergenic | 50.0% | |
| AGAGAGAAAAGAAGGGAGGG+AGG | - | chr4_3:48092655-48092674 | None:intergenic | 50.0% | |
| TGGAGAAGGATGGGTCAAAG+TGG | + | chr4_3:48092748-48092767 | Msa0644310:exon | 50.0% | |
| GGCAGCAGCAATATGAAGAG+GGG | - | chr4_3:48092905-48092924 | None:intergenic | 50.0% | |
| CCGAATTATCAGATGGACGG+AGG | - | chr4_3:48092982-48093001 | None:intergenic | 50.0% | |
| ACTAACCAAGAAGCAGCCAC+GGG | - | chr4_3:48093623-48093642 | None:intergenic | 50.0% | |
| GACTAACCAAGAAGCAGCCA+CGG | - | chr4_3:48093624-48093643 | None:intergenic | 50.0% | |
| ! | AGGTGCTACACCATTGCATC+TGG | + | chr4_3:48093785-48093804 | Msa0644310:CDS | 50.0% |
| ATCTGGCAGCTCGTCAAAGA+CGG | + | chr4_3:48093802-48093821 | Msa0644310:CDS | 50.0% | |
| GTCTCCAACGTGATGCATCT+GGG | + | chr4_3:48094079-48094098 | Msa0644310:CDS | 50.0% | |
| TGTACCCAGATGCATCACGT+TGG | - | chr4_3:48094086-48094105 | None:intergenic | 50.0% | |
| !!! | CAGCGTGCTTTTTCCTCCAT+AGG | - | chr4_3:48094180-48094199 | None:intergenic | 50.0% |
| ATGCAGGCGGATACCATATG+TGG | + | chr4_3:48094648-48094667 | Msa0644310:intron | 50.0% | |
| CATCTGCACAGCCTCTTGTA+TGG | + | chr4_3:48094719-48094738 | Msa0644310:CDS | 50.0% | |
| TTCCCTGTTCGCGTCCAATA+AGG | - | chr4_3:48094806-48094825 | None:intergenic | 50.0% | |
| TATTGGACGCGAACAGGGAA+AGG | + | chr4_3:48094806-48094825 | Msa0644310:CDS | 50.0% | |
| ATTGGACGCGAACAGGGAAA+GGG | + | chr4_3:48094807-48094826 | Msa0644310:CDS | 50.0% | |
| GGCTTGACTAAGTCGTTACC+CGG | - | chr4_3:48095174-48095193 | None:intergenic | 50.0% | |
| ! | CCTTTTAGGCTTAGAGCTCG+GGG | + | chr4_3:48095200-48095219 | Msa0644310:intron | 50.0% |
| ! | TCTAAGGTAGCTCGTTGGGA+TGG | - | chr4_3:48095233-48095252 | None:intergenic | 50.0% |
| ! | ATGCTGCATCTGCTTTGAGC+AGG | + | chr4_3:48095631-48095650 | Msa0644310:CDS | 50.0% |
| TGCATTGTGCACACATCTGG+TGG | - | chr4_3:48095685-48095704 | None:intergenic | 50.0% | |
| GTGTGCATTGTGCACACATC+TGG | - | chr4_3:48095688-48095707 | None:intergenic | 50.0% | |
| GGGATGCGAAGTTGAAGTGT+TGG | - | chr4_3:48095735-48095754 | None:intergenic | 50.0% | |
| ACAGAATGGACAGATGGGTG+GGG | - | chr4_3:48095759-48095778 | None:intergenic | 50.0% | |
| GACAGAATGGACAGATGGGT+GGG | - | chr4_3:48095760-48095779 | None:intergenic | 50.0% | |
| GCTTCGACAGAATGGACAGA+TGG | - | chr4_3:48095765-48095784 | None:intergenic | 50.0% | |
| GATATGGCGCTTCGACAGAA+TGG | - | chr4_3:48095773-48095792 | None:intergenic | 50.0% | |
| GGTAGCAGCAGCAGTTTCAA+GGG | + | chr4_3:48095902-48095921 | Msa0644310:CDS | 50.0% | |
| AAAATGAGCGGCCGTAGTTC+CGG | + | chr4_3:48095950-48095969 | Msa0644310:CDS | 50.0% | |
| !! | AACAGGTGTCGACGTCATTG+TGG | - | chr4_3:48096013-48096032 | None:intergenic | 50.0% |
| AGGGAGGGACAGTGTCACAT+AGG | - | chr4_3:48092639-48092658 | None:intergenic | 55.0% | |
| TGCTGCCAATGGTCAGATCC+AGG | + | chr4_3:48092918-48092937 | Msa0644310:CDS | 55.0% | |
| TGCTGCTCAATCTAGTCCCG+TGG | + | chr4_3:48093604-48093623 | Msa0644310:CDS | 55.0% | |
| TGACGAGCTGCCAGATGCAA+TGG | - | chr4_3:48093798-48093817 | None:intergenic | 55.0% | |
| CGTCTCCAACGTGATGCATC+TGG | + | chr4_3:48094078-48094097 | Msa0644310:CDS | 55.0% | |
| !! | AGGCCTTATTGGACGCGAAC+AGG | + | chr4_3:48094800-48094819 | Msa0644310:CDS | 55.0% |
| !! | GGCCTTATTGGACGCGAACA+GGG | + | chr4_3:48094801-48094820 | Msa0644310:CDS | 55.0% |
| GACTAAGTCGTTACCCGGCT+GGG | - | chr4_3:48095169-48095188 | None:intergenic | 55.0% | |
| TGACTAAGTCGTTACCCGGC+TGG | - | chr4_3:48095170-48095189 | None:intergenic | 55.0% | |
| !! | CCCCGAGCTCTAAGCCTAAA+AGG | - | chr4_3:48095203-48095222 | None:intergenic | 55.0% |
| ACATCTGGTGGCCACAGTCT+TGG | - | chr4_3:48095673-48095692 | None:intergenic | 55.0% | |
| AATGGACAGATGGGTGGGGT+GGG | - | chr4_3:48095755-48095774 | None:intergenic | 55.0% | |
| CGACAGAATGGACAGATGGG+TGG | - | chr4_3:48095761-48095780 | None:intergenic | 55.0% | |
| GGGTAGCAGCAGCAGTTTCA+AGG | + | chr4_3:48095901-48095920 | Msa0644310:CDS | 55.0% | |
| AAATGAGCGGCCGTAGTTCC+GGG | + | chr4_3:48095951-48095970 | Msa0644310:CDS | 55.0% | |
| CTAGTCCCGTGGCTGCTTCT+TGG | + | chr4_3:48093615-48093634 | Msa0644310:CDS | 60.0% | |
| !! | TTTGGCTCTGCTGTCCCAGC+CGG | + | chr4_3:48095152-48095171 | Msa0644310:intron | 60.0% |
| ! | TGATGGGCCGCTACACGCAT+TGG | - | chr4_3:48095294-48095313 | None:intergenic | 60.0% |
| GAATGGACAGATGGGTGGGG+TGG | - | chr4_3:48095756-48095775 | None:intergenic | 60.0% | |
| !! | TTGGCTCTGCTGTCCCAGCC+GGG | + | chr4_3:48095153-48095172 | Msa0644310:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 48092550 | 48096355 | 48092550 | ID=Msa0644310;Name=Msa0644310 |
| chr4_3 | mRNA | 48092550 | 48096355 | 48092550 | ID=Msa0644310-mRNA-1;Parent=Msa0644310;Name=Msa0644310-mRNA-1;_AED=0.05;_eAED=0.05;_QI=207|1|1|1|0.85|0.87|8|337|447 |
| chr4_3 | exon | 48092550 | 48092939 | 48092550 | ID=Msa0644310-mRNA-1:exon:11394;Parent=Msa0644310-mRNA-1 |
| chr4_3 | exon | 48093164 | 48093223 | 48093164 | ID=Msa0644310-mRNA-1:exon:11395;Parent=Msa0644310-mRNA-1 |
| chr4_3 | exon | 48093349 | 48093420 | 48093349 | ID=Msa0644310-mRNA-1:exon:11396;Parent=Msa0644310-mRNA-1 |
| chr4_3 | exon | 48093515 | 48093636 | 48093515 | ID=Msa0644310-mRNA-1:exon:11397;Parent=Msa0644310-mRNA-1 |
| chr4_3 | exon | 48093749 | 48093889 | 48093749 | ID=Msa0644310-mRNA-1:exon:11398;Parent=Msa0644310-mRNA-1 |
| chr4_3 | exon | 48093993 | 48094100 | 48093993 | ID=Msa0644310-mRNA-1:exon:11399;Parent=Msa0644310-mRNA-1 |
| chr4_3 | exon | 48094654 | 48094906 | 48094654 | ID=Msa0644310-mRNA-1:exon:11400;Parent=Msa0644310-mRNA-1 |
| chr4_3 | exon | 48095614 | 48096355 | 48095614 | ID=Msa0644310-mRNA-1:exon:11401;Parent=Msa0644310-mRNA-1 |
| chr4_3 | five_prime_UTR | 48092550 | 48092756 | 48092550 | ID=Msa0644310-mRNA-1:five_prime_utr;Parent=Msa0644310-mRNA-1 |
| chr4_3 | CDS | 48092757 | 48092939 | 48092757 | ID=Msa0644310-mRNA-1:cds;Parent=Msa0644310-mRNA-1 |
| chr4_3 | CDS | 48093164 | 48093223 | 48093164 | ID=Msa0644310-mRNA-1:cds;Parent=Msa0644310-mRNA-1 |
| chr4_3 | CDS | 48093349 | 48093420 | 48093349 | ID=Msa0644310-mRNA-1:cds;Parent=Msa0644310-mRNA-1 |
| chr4_3 | CDS | 48093515 | 48093636 | 48093515 | ID=Msa0644310-mRNA-1:cds;Parent=Msa0644310-mRNA-1 |
| chr4_3 | CDS | 48093749 | 48093889 | 48093749 | ID=Msa0644310-mRNA-1:cds;Parent=Msa0644310-mRNA-1 |
| chr4_3 | CDS | 48093993 | 48094100 | 48093993 | ID=Msa0644310-mRNA-1:cds;Parent=Msa0644310-mRNA-1 |
| chr4_3 | CDS | 48094654 | 48094906 | 48094654 | ID=Msa0644310-mRNA-1:cds;Parent=Msa0644310-mRNA-1 |
| chr4_3 | CDS | 48095614 | 48096018 | 48095614 | ID=Msa0644310-mRNA-1:cds;Parent=Msa0644310-mRNA-1 |
| chr4_3 | three_prime_UTR | 48096019 | 48096355 | 48096019 | ID=Msa0644310-mRNA-1:three_prime_utr;Parent=Msa0644310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
