Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548350 | XP_013456116.1 | 97.987 | 447 | 9 | 0 | 1 | 447 | 1 | 447 | 0.0 | 910 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548350 | sp|Q94B55|XB31_ARATH | 67.834 | 457 | 133 | 5 | 1 | 446 | 1 | 454 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548350 | A0A072UKA7 | 97.987 | 447 | 9 | 0 | 1 | 447 | 1 | 447 | 0.0 | 910 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018920 | Msa0548350 | 0.806639 | 7.460265e-50 | -8.615850e-47 |
| Msa0156050 | Msa0548350 | 0.803035 | 4.224131e-49 | -8.615850e-47 |
| Msa0156090 | Msa0548350 | 0.808849 | 2.530570e-50 | -8.615850e-47 |
| Msa0432690 | Msa0548350 | 0.825341 | 4.941879e-54 | -8.615850e-47 |
| Msa0281540 | Msa0548350 | 0.802084 | 6.633959e-49 | -8.615850e-47 |
| Msa0320580 | Msa0548350 | 0.801107 | 1.052402e-48 | -8.615850e-47 |
| Msa0344110 | Msa0548350 | 0.807822 | 4.189833e-50 | -8.615850e-47 |
| Msa0500450 | Msa0548350 | 0.803621 | 3.194223e-49 | -8.615850e-47 |
| Msa0521320 | Msa0548350 | 0.816456 | 5.480158e-52 | -8.615850e-47 |
| Msa0548350 | Msa0603290 | 0.879818 | 9.136360e-70 | -8.615850e-47 |
| Msa0548350 | Msa0644310 | 0.905096 | 6.155292e-80 | -8.615850e-47 |
| Msa0548350 | Msa0653160 | 0.804376 | 2.225279e-49 | -8.615850e-47 |
| Msa0548350 | Msa0684110 | 0.861911 | 7.356157e-64 | -8.615850e-47 |
| Msa0548350 | Msa0820620 | 0.825886 | 3.669667e-54 | -8.615850e-47 |
| Msa0548350 | Msa1008850 | 0.822798 | 1.952983e-53 | -8.615850e-47 |
| Msa0548350 | Msa1138800 | 0.811405 | 7.118063e-51 | -8.615850e-47 |
| Msa0548350 | Msa1212920 | 0.802768 | 4.796817e-49 | -8.615850e-47 |
| Msa0548350 | Msa1218810 | 0.814564 | 1.444951e-51 | -8.615850e-47 |
| Msa0548350 | Msa1236150 | 0.810002 | 1.431155e-50 | -8.615850e-47 |
| Msa0548350 | Msa1299980 | 0.832856 | 7.443904e-56 | -8.615850e-47 |
| Msa0548350 | Msa1331650 | 0.821065 | 4.921410e-53 | -8.615850e-47 |
| Msa0548350 | Msa1341750 | 0.804778 | 1.834437e-49 | -8.615850e-47 |
| Msa0548350 | Msa1385570 | 0.803088 | 4.119562e-49 | -8.615850e-47 |
| Msa0548350 | Msa1389820 | 0.800123 | 1.670761e-48 | -8.615850e-47 |
| Msa0548350 | Msa1448960 | 0.803768 | 2.977927e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548350 | MtrunA17_Chr4g0031491 | 97.987 | 447 | 9 | 0 | 1 | 447 | 1 | 447 | 0.0 | 910 |
| Msa0548350 | MtrunA17_Chr2g0328031 | 74.944 | 447 | 106 | 5 | 1 | 445 | 1 | 443 | 0.0 | 693 |
| Msa0548350 | MtrunA17_Chr4g0010051 | 59.911 | 449 | 166 | 6 | 1 | 440 | 1 | 444 | 2.62e-180 | 511 |
| Msa0548350 | MtrunA17_Chr6g0472461 | 33.251 | 403 | 207 | 13 | 1 | 372 | 1 | 372 | 3.69e-45 | 164 |
| Msa0548350 | MtrunA17_Chr4g0073161 | 30.303 | 396 | 221 | 9 | 6 | 376 | 11 | 376 | 6.74e-38 | 144 |
| Msa0548350 | MtrunA17_Chr1g0203651 | 28.859 | 298 | 160 | 11 | 89 | 376 | 1 | 256 | 1.73e-20 | 92.8 |
| Msa0548350 | MtrunA17_Chr1g0212971 | 31.731 | 208 | 121 | 8 | 13 | 216 | 132 | 322 | 2.71e-16 | 81.3 |
| Msa0548350 | MtrunA17_Chr7g0263421 | 30.000 | 210 | 126 | 6 | 11 | 216 | 48 | 240 | 1.32e-15 | 79.0 |
| Msa0548350 | MtrunA17_Chr7g0276681 | 30.603 | 232 | 139 | 6 | 13 | 239 | 82 | 296 | 9.15e-15 | 76.3 |
| Msa0548350 | MtrunA17_Chr1g0211241 | 26.383 | 235 | 153 | 5 | 1 | 232 | 124 | 341 | 2.38e-14 | 75.5 |
| Msa0548350 | MtrunA17_Chr2g0327711 | 28.019 | 207 | 130 | 5 | 13 | 216 | 67 | 257 | 4.94e-14 | 74.3 |
| Msa0548350 | MtrunA17_Chr5g0418551 | 31.818 | 220 | 130 | 4 | 13 | 229 | 20 | 222 | 6.94e-14 | 71.2 |
| Msa0548350 | MtrunA17_Chr2g0293861 | 32.484 | 157 | 90 | 6 | 28 | 179 | 12 | 157 | 2.74e-13 | 68.9 |
| Msa0548350 | MtrunA17_Chr4g0030551 | 26.829 | 205 | 135 | 4 | 13 | 216 | 71 | 261 | 3.27e-12 | 68.6 |
| Msa0548350 | MtrunA17_Chr6g0461061 | 29.000 | 200 | 126 | 4 | 51 | 250 | 181 | 364 | 1.14e-11 | 66.6 |
| Msa0548350 | MtrunA17_Chr5g0439191 | 31.818 | 132 | 81 | 3 | 50 | 179 | 8 | 132 | 1.45e-11 | 63.2 |
| Msa0548350 | MtrunA17_Chr7g0274241 | 27.076 | 277 | 165 | 8 | 51 | 296 | 59 | 329 | 4.25e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548350 | AT2G28840.1 | 67.834 | 457 | 133 | 5 | 1 | 446 | 1 | 454 | 0.0 | 627 |
| Msa0548350 | AT2G28840.2 | 69.948 | 386 | 103 | 4 | 72 | 446 | 57 | 440 | 0.0 | 551 |
| Msa0548350 | AT5G07270.1 | 31.463 | 410 | 230 | 10 | 1 | 388 | 1 | 381 | 2.16e-42 | 157 |
| Msa0548350 | AT5G57740.1 | 29.442 | 394 | 222 | 10 | 6 | 372 | 11 | 375 | 6.22e-31 | 125 |
| Msa0548350 | AT5G02620.4 | 27.300 | 337 | 201 | 12 | 11 | 329 | 55 | 365 | 1.91e-19 | 91.3 |
| Msa0548350 | AT5G02620.1 | 27.300 | 337 | 201 | 12 | 11 | 329 | 55 | 365 | 1.91e-19 | 91.3 |
| Msa0548350 | AT5G02620.3 | 27.300 | 337 | 201 | 12 | 11 | 329 | 55 | 365 | 1.91e-19 | 91.3 |
| Msa0548350 | AT5G02620.5 | 30.583 | 206 | 122 | 5 | 11 | 212 | 55 | 243 | 8.47e-18 | 86.3 |
| Msa0548350 | AT5G02620.2 | 30.583 | 206 | 122 | 5 | 11 | 212 | 55 | 243 | 8.47e-18 | 86.3 |
| Msa0548350 | AT5G60070.1 | 26.488 | 336 | 208 | 12 | 13 | 330 | 74 | 388 | 1.54e-17 | 85.5 |
| Msa0548350 | AT5G60070.1 | 29.187 | 209 | 127 | 4 | 16 | 216 | 36 | 231 | 7.93e-13 | 70.9 |
| Msa0548350 | AT3G12360.1 | 31.674 | 221 | 127 | 10 | 13 | 226 | 130 | 333 | 1.68e-15 | 79.3 |
| Msa0548350 | AT3G12360.2 | 31.674 | 221 | 127 | 10 | 13 | 226 | 118 | 321 | 1.88e-15 | 79.0 |
| Msa0548350 | AT1G07710.2 | 30.144 | 209 | 129 | 5 | 11 | 217 | 65 | 258 | 7.10e-15 | 77.0 |
| Msa0548350 | AT1G07710.1 | 30.144 | 209 | 129 | 5 | 11 | 217 | 65 | 258 | 7.10e-15 | 77.0 |
| Msa0548350 | AT5G20350.1 | 26.613 | 248 | 159 | 6 | 7 | 248 | 22 | 252 | 2.19e-14 | 75.9 |
| Msa0548350 | AT3G04710.1 | 32.093 | 215 | 103 | 6 | 51 | 236 | 59 | 259 | 2.56e-14 | 75.1 |
| Msa0548350 | AT3G04710.3 | 28.625 | 269 | 138 | 8 | 51 | 290 | 283 | 526 | 3.84e-14 | 75.1 |
| Msa0548350 | AT3G04710.2 | 28.625 | 269 | 137 | 7 | 51 | 290 | 59 | 301 | 1.84e-13 | 72.4 |
| Msa0548350 | AT5G13530.2 | 25.592 | 211 | 133 | 5 | 16 | 216 | 472 | 668 | 1.88e-12 | 70.1 |
| Msa0548350 | AT5G13530.1 | 25.592 | 211 | 133 | 5 | 16 | 216 | 472 | 668 | 1.88e-12 | 70.1 |
| Msa0548350 | AT2G31820.1 | 26.749 | 243 | 162 | 6 | 13 | 253 | 190 | 418 | 2.68e-12 | 69.3 |
| Msa0548350 | AT3G24530.1 | 32.895 | 152 | 88 | 4 | 23 | 169 | 26 | 168 | 5.46e-12 | 68.2 |
Find 121 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTAGAGCAGGCATTAT+TGG | 0.246425 | 4_1:+42330940 | Msa0548350:CDS |
| GGAAAGGCATGGCCTATTAT+TGG | 0.282536 | 4_1:+42332481 | Msa0548350:three_prime_UTR |
| CTAGTCCCGTGGCTGCTTCT+TGG | 0.292776 | 4_1:+42329764 | Msa0548350:CDS |
| AAAATGAGCGGCCGTAGTTC+CGG | 0.300237 | 4_1:+42332101 | Msa0548350:CDS |
| TGTGCTTCAACTAGCAGATA+TGG | 0.305279 | 4_1:+42330016 | Msa0548350:CDS |
| CGTCTCCAACGTGATGCATC+TGG | 0.332475 | 4_1:+42330227 | Msa0548350:CDS |
| TGGTCATTCTTCTTGCCTTA+AGG | 0.368140 | 4_1:+42329720 | Msa0548350:CDS |
| AGGCATTATTGGACGCGAAC+AGG | 0.370869 | 4_1:+42330951 | Msa0548350:CDS |
| GATAACCATCAGTTTAGATA+TGG | 0.374202 | 4_1:-42331937 | None:intergenic |
| TGTGGAGATGGAAGAGAGTA+AGG | 0.374735 | 4_1:-42331004 | None:intergenic |
| AAATGAGCGGCCGTAGTTCC+GGG | 0.375798 | 4_1:+42332102 | Msa0548350:CDS |
| ATCACATGACAACCAATAAT+AGG | 0.376232 | 4_1:-42332493 | None:intergenic |
| CGAAATTTCCTTGATTTGCT+TGG | 0.378282 | 4_1:-42332017 | None:intergenic |
| TTGCATTATGCTGCTTACTA+TGG | 0.392266 | 4_1:+42329700 | Msa0548350:CDS |
| TACTTCAAAGCAACCACATA+TGG | 0.395193 | 4_1:-42330812 | None:intergenic |
| AACAGAATGTGCACACATTC+AGG | 0.420204 | 4_1:-42329974 | None:intergenic |
| CATCTGCACAGCCTCTTGTA+TGG | 0.420700 | 4_1:+42330870 | Msa0548350:CDS |
| TTGTCCAATGTAAATTCATT+CGG | 0.426931 | 4_1:+42332077 | Msa0548350:CDS |
| CCTCTTCATTTAGCAGCTAA+AGG | 0.427567 | 4_1:+42330158 | Msa0548350:CDS |
| CTGATTATCTTCAATGATGA+TGG | 0.429013 | 4_1:-42330893 | None:intergenic |
| GGGTAGCAGCAGCAGTTTCA+AGG | 0.445286 | 4_1:+42332052 | Msa0548350:CDS |
| AGAGAGAGAAGAAGGGAGGG+AGG | 0.447791 | 4_1:-42328777 | None:intergenic |
| AGGTGCTACACCATTGCATC+TGG | 0.451079 | 4_1:+42329934 | Msa0548350:CDS |
| TGATTGCTTCCGAAAATGAA+TGG | 0.451396 | 4_1:+42332126 | Msa0548350:CDS |
| ACATCTGGTGGCCACAGTCT+TGG | 0.456216 | 4_1:-42331821 | None:intergenic |
| TCTAATAAAACTTTAGCCTC+TGG | 0.458151 | 4_1:-42330926 | None:intergenic |
| TGCTATATTTGCAGATGTCC+TGG | 0.458321 | 4_1:+42330128 | Msa0548350:intron |
| ATCTAAACTGATGGTTATCA+AGG | 0.465152 | 4_1:+42331941 | Msa0548350:CDS |
| GTGTGCATTGTGCACACATC+TGG | 0.471356 | 4_1:-42331836 | None:intergenic |
| GATATGGCGCTTCGACAGAA+TGG | 0.471448 | 4_1:-42331921 | None:intergenic |
| AATGAGCAATAAAATAAGAA+AGG | 0.473754 | 4_1:+42332459 | Msa0548350:three_prime_UTR |
| GTTTCAAGCCAAGCAAATCA+AGG | 0.478084 | 4_1:+42332009 | Msa0548350:CDS |
| GTGCTTCAACTAGCAGATAT+GGG | 0.478560 | 4_1:+42330017 | Msa0548350:CDS |
| GAGAGAGAAGAAGGGAGGGA+GGG | 0.484354 | 4_1:-42328776 | None:intergenic |
| CTTCATATTGCTGCTGCCAA+TGG | 0.485862 | 4_1:+42329044 | Msa0548350:CDS |
| TATTGGACGCGAACAGGGAA+AGG | 0.487813 | 4_1:+42330957 | Msa0548350:CDS |
| TGCTGCCAATGGTCAGATCC+AGG | 0.493489 | 4_1:+42329055 | Msa0548350:CDS |
| TGCATTGCTGCCAACATAAG+TGG | 0.493653 | 4_1:-42329497 | None:intergenic |
| CAGCAGAAAGTATTGCCTTA+AGG | 0.496959 | 4_1:-42329735 | None:intergenic |
| GGTAGCAGCAGCAGTTTCAA+GGG | 0.499150 | 4_1:+42332053 | Msa0548350:CDS |
| GCTATATTTGCAGATGTCCT+GGG | 0.514636 | 4_1:+42330129 | Msa0548350:intron |
| CATCCGCGAATTATTAGCAT+GGG | 0.514704 | 4_1:+42330196 | Msa0548350:CDS |
| CTCTTTCGTGCTGTTCAACA+TGG | 0.515412 | 4_1:+42328939 | Msa0548350:CDS |
| TTGATTTGAAAACGTGGAGA+AGG | 0.515471 | 4_1:+42328871 | Msa0548350:five_prime_UTR |
| TGTGTTGAATCGACAAAAGC+AGG | 0.516759 | 4_1:+42329335 | Msa0548350:CDS |
| ATCTCCACACTCTGATCGAA+TGG | 0.518796 | 4_1:+42331018 | Msa0548350:CDS |
| ATGCAGGCGGATACCATATG+TGG | 0.519878 | 4_1:+42330799 | Msa0548350:intron |
| ATGAGCAATAAAATAAGAAA+GGG | 0.522122 | 4_1:+42332460 | Msa0548350:three_prime_UTR |
| GTCTCCAACGTGATGCATCT+GGG | 0.525701 | 4_1:+42330228 | Msa0548350:CDS |
| AATGGACAGATGGGTGGGGT+GGG | 0.525799 | 4_1:-42331903 | None:intergenic |
| AGCAGTTATTCAGACTAACT+TGG | 0.526064 | 4_1:-42328712 | None:intergenic |
| ATGCTGCATCTGCTTTGAGC+AGG | 0.528277 | 4_1:+42331782 | Msa0548350:CDS |
| GACAGAATGGACAGATGGGT+GGG | 0.529180 | 4_1:-42331908 | None:intergenic |
| TTTGAAAACGTGGAGAAGGA+TGG | 0.530704 | 4_1:+42328875 | Msa0548350:exon |
| AGGGAGGGACAGTGTCACAT+AGG | 0.531010 | 4_1:-42328761 | None:intergenic |
| CACCCCATGCTAATAATTCG+CGG | 0.532650 | 4_1:-42330199 | None:intergenic |
| ATTCGATCAGAGTGTGGAGA+TGG | 0.534607 | 4_1:-42331016 | None:intergenic |
| GAATGGACAGATGGGTGGGG+TGG | 0.536558 | 4_1:-42331904 | None:intergenic |
| GTAGTACGATTGAGAAGAGA+AGG | 0.541763 | 4_1:-42328999 | None:intergenic |
| GGCATTATTGGACGCGAACA+GGG | 0.542709 | 4_1:+42330952 | Msa0548350:CDS |
| AATTCAGACCCCACTTATGT+TGG | 0.543384 | 4_1:+42329487 | Msa0548350:intron |
| CTTATGTTGGCAGCAATGCA+TGG | 0.544992 | 4_1:+42329500 | Msa0548350:CDS |
| CAAAGTGGTCTTAGTTGTAG+AGG | 0.545298 | 4_1:+42328900 | Msa0548350:CDS |
| CCTTTAGCTGCTAAATGAAG+AGG | 0.547668 | 4_1:-42330158 | None:intergenic |
| GACTAACCAAGAAGCAGCCA+CGG | 0.550497 | 4_1:-42329770 | None:intergenic |
| GATTGCTTCCGAAAATGAAT+GGG | 0.551989 | 4_1:+42332127 | Msa0548350:CDS |
| GCATTGCTGCCAACATAAGT+GGG | 0.556318 | 4_1:-42329496 | None:intergenic |
| AAGCAATCATCCCGGAACTA+CGG | 0.559960 | 4_1:-42332112 | None:intergenic |
| CAATCAAATGATAATAAATG+TGG | 0.568505 | 4_1:+42328843 | Msa0548350:five_prime_UTR |
| TATTCAGACTAACTTGGCTG+TGG | 0.570278 | 4_1:-42328706 | None:intergenic |
| GTGAATATTAGAGACGGTAG+AGG | 0.570533 | 4_1:+42329914 | Msa0548350:CDS |
| GTGGAAAAGTTGCTTGAAGC+TGG | 0.573507 | 4_1:+42329536 | Msa0548350:CDS |
| TTGAAAACGTGGAGAAGGAT+GGG | 0.574196 | 4_1:+42328876 | Msa0548350:exon |
| CAATAAAATAAGAAAGGGAA+AGG | 0.577041 | 4_1:+42332465 | Msa0548350:three_prime_UTR |
| ATTGGACGCGAACAGGGAAA+GGG | 0.577168 | 4_1:+42330958 | Msa0548350:CDS |
| TTAATGTTTGATGTGTGTCA+TGG | 0.578777 | 4_1:+42329667 | Msa0548350:CDS |
| GCTTCGACAGAATGGACAGA+TGG | 0.579479 | 4_1:-42331913 | None:intergenic |
| ACAGAATGGACAGATGGGTG+GGG | 0.584465 | 4_1:-42331907 | None:intergenic |
| TTGAACCTGGATCTGACCAT+TGG | 0.585236 | 4_1:-42329060 | None:intergenic |
| GGTAGAAACTCACGAAGACA+TGG | 0.587372 | 4_1:+42331962 | Msa0548350:CDS |
| TGGCAGCAGCAATATGAAGA+GGG | 0.588977 | 4_1:-42329040 | None:intergenic |
| CGACAGAATGGACAGATGGG+TGG | 0.592181 | 4_1:-42331909 | None:intergenic |
| ATCTGGCAGCTCGTCAAAGA+CGG | 0.594811 | 4_1:+42329951 | Msa0548350:CDS |
| AGACTAACTTGGCTGTGGCA+TGG | 0.597086 | 4_1:-42328701 | None:intergenic |
| AAGCGCCATATCTAAACTGA+TGG | 0.601000 | 4_1:+42331932 | Msa0548350:CDS |
| TGACGAGCTGCCAGATGCAA+TGG | 0.602034 | 4_1:-42329944 | None:intergenic |
| GTGCACATTCTGTTGTGTAG+TGG | 0.607255 | 4_1:+42329983 | Msa0548350:CDS |
| AATGATGATGGCCATACAAG+AGG | 0.608678 | 4_1:-42330881 | None:intergenic |
| TGCTGCTCAATCTAGTCCCG+TGG | 0.608978 | 4_1:+42329753 | Msa0548350:CDS |
| GCAACTATGCTTGATAAGCA+AGG | 0.609839 | 4_1:+42332220 | Msa0548350:three_prime_UTR |
| GCATGGAAAGATTGAATGTG+TGG | 0.610223 | 4_1:+42329517 | Msa0548350:CDS |
| GCATCCGCGAATTATTAGCA+TGG | 0.610332 | 4_1:+42330195 | Msa0548350:CDS |
| CGAATTATTAGCATGGGGTG+CGG | 0.613204 | 4_1:+42330202 | Msa0548350:CDS |
| GGGATGCGAAGTTGAAGTGT+TGG | 0.613230 | 4_1:-42331883 | None:intergenic |
| CTTCATTTAGCAGCTAAAGG+AGG | 0.613756 | 4_1:+42330161 | Msa0548350:CDS |
| AAATGAAGAGGAGTACTCCC+AGG | 0.616255 | 4_1:-42330146 | None:intergenic |
| CTTCGACAGAATGGACAGAT+GGG | 0.616676 | 4_1:-42331912 | None:intergenic |
| TTGGCAGCAGCAATATGAAG+AGG | 0.619663 | 4_1:-42329041 | None:intergenic |
| ACTAACCAAGAAGCAGCCAC+GGG | 0.627620 | 4_1:-42329769 | None:intergenic |
| AACACTCTGCTGTCACAACA+AGG | 0.631175 | 4_1:+42331860 | Msa0548350:CDS |
| AAATAAGAAAGGGAAAGGCA+TGG | 0.635946 | 4_1:+42332470 | Msa0548350:three_prime_UTR |
| TGTAGAGGTAGTCATGAACA+TGG | 0.643863 | 4_1:+42328915 | Msa0548350:CDS |
| CGGTTTGTGAATATTAGAGA+CGG | 0.645981 | 4_1:+42329908 | Msa0548350:CDS |
| TCATCCATTCGATCAGAGTG+TGG | 0.646169 | 4_1:-42331022 | None:intergenic |
| TGCATTGTGCACACATCTGG+TGG | 0.649232 | 4_1:-42331833 | None:intergenic |
| AACAGGTGTCGACATCATTG+TGG | 0.652268 | 4_1:-42332161 | None:intergenic |
| TAGTACGATTGAGAAGAGAA+GGG | 0.656985 | 4_1:-42328998 | None:intergenic |
| TGGAGAAGGATGGGTCAAAG+TGG | 0.658025 | 4_1:+42328885 | Msa0548350:exon |
| AATCAGTGAACTTAATCCAG+AGG | 0.659408 | 4_1:+42330910 | Msa0548350:CDS |
| GGCAGCAGCAATATGAAGAG+GGG | 0.664522 | 4_1:-42329039 | None:intergenic |
| CACGAAGACATGGATCTAGA+CGG | 0.665249 | 4_1:+42331972 | Msa0548350:CDS |
| TTTGCTTGGCTTGAAACAAG+TGG | 0.668168 | 4_1:-42332003 | None:intergenic |
| TGTACCCAGATGCATCACGT+TGG | 0.686205 | 4_1:-42330232 | None:intergenic |
| ATCCGCGAATTATTAGCATG+GGG | 0.692205 | 4_1:+42330197 | Msa0548350:CDS |
| GTTGCTTTGAAGTACAAACA+TGG | 0.699828 | 4_1:+42330821 | Msa0548350:CDS |
| AAATTTCGTAACATGAACGA+GGG | 0.699839 | 4_1:+42332032 | Msa0548350:CDS |
| GAAATTTCGTAACATGAACG+AGG | 0.700659 | 4_1:+42332031 | Msa0548350:CDS |
| GAAACTTTGATTTGAAAACG+TGG | 0.708844 | 4_1:+42328865 | Msa0548350:five_prime_UTR |
| CATTGCTGCCAACATAAGTG+GGG | 0.709787 | 4_1:-42329495 | None:intergenic |
| AATGGATGACAACATCTCTG+AGG | 0.710530 | 4_1:+42331036 | Msa0548350:CDS |
| ATAATTGAAGTCCAAGACTG+TGG | 0.721086 | 4_1:+42331810 | Msa0548350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCTTTAATTGTATTTTTT+TGG | + | chr4_1:42329461-42329480 | Msa0548350:intron | 10.0% |
| !! | AATAATTATGAAAAATTATC+AGG | + | chr4_1:42329642-42329661 | Msa0548350:intron | 10.0% |
| !!! | GATTATATTTTTCAAATTAT+AGG | - | chr4_1:42330593-42330612 | None:intergenic | 10.0% |
| !! | TATAAATTTAATAAGTTTGT+AGG | - | chr4_1:42331151-42331170 | None:intergenic | 10.0% |
| !! | TCATAAAATTGAAATAAACA+TGG | - | chr4_1:42329586-42329605 | None:intergenic | 15.0% |
| !!! | GATTTTAAAACATTTAACAA+TGG | + | chr4_1:42329853-42329872 | Msa0548350:intron | 15.0% |
| !! | AAATATGTAAACCTATTATT+TGG | + | chr4_1:42330524-42330543 | Msa0548350:intron | 15.0% |
| !! | AAAAATATAATCACTTGTTT+CGG | + | chr4_1:42330601-42330620 | Msa0548350:intron | 15.0% |
| !! | AAACTTATTAAATTTATAGC+AGG | + | chr4_1:42331153-42331172 | Msa0548350:intron | 15.0% |
| !!! | CTAATTATTTGGATATTTTT+CGG | + | chr4_1:42331180-42331199 | Msa0548350:intron | 15.0% |
| !!! | AAGAATTTTCTCAAATTTAA+TGG | - | chr4_1:42332357-42332376 | None:intergenic | 15.0% |
| !! | CAATCAAATGATAATAAATG+TGG | + | chr4_1:42328843-42328862 | Msa0548350:five_prime_UTR | 20.0% |
| !! | AAAAATTTCAAAACCCAATT+GGG | - | chr4_1:42329228-42329247 | None:intergenic | 20.0% |
| !! | AAAAAATTTCAAAACCCAAT+TGG | - | chr4_1:42329229-42329248 | None:intergenic | 20.0% |
| !!! | TTTGGATTTTGATTTGAATT+TGG | + | chr4_1:42329374-42329393 | Msa0548350:intron | 20.0% |
| !!! | GATTTGAATTTGGATTTTAA+TGG | + | chr4_1:42329384-42329403 | Msa0548350:intron | 20.0% |
| !! | AAAATTGAAATAAACATGGA+GGG | - | chr4_1:42329582-42329601 | None:intergenic | 20.0% |
| !! | TAAAATTGAAATAAACATGG+AGG | - | chr4_1:42329583-42329602 | None:intergenic | 20.0% |
| !! | TCATTAATTTCTTTCCTAAT+TGG | + | chr4_1:42329806-42329825 | Msa0548350:intron | 20.0% |
| !! | AAGAATACAATTATATTGCA+GGG | + | chr4_1:42329877-42329896 | Msa0548350:intron | 20.0% |
| !!! | TGTTTGCTATTTTTCAATTT+AGG | + | chr4_1:42330646-42330665 | Msa0548350:intron | 20.0% |
| !! | TTTAACTGATCAAAATTAGA+AGG | - | chr4_1:42331247-42331266 | None:intergenic | 20.0% |
| !! | GGTAAAATGAAAGTAAAAAA+AGG | + | chr4_1:42332241-42332260 | Msa0548350:three_prime_UTR | 20.0% |
| !!! | TTCTTTTTTCTCATTAGTTA+AGG | + | chr4_1:42332372-42332391 | Msa0548350:three_prime_UTR | 20.0% |
| !!! | TACACAATACATTTTCTTTA+TGG | - | chr4_1:42332407-42332426 | None:intergenic | 20.0% |
| !! | AATGAGCAATAAAATAAGAA+AGG | + | chr4_1:42332459-42332478 | Msa0548350:three_prime_UTR | 20.0% |
| !! | ATGAGCAATAAAATAAGAAA+GGG | + | chr4_1:42332460-42332479 | Msa0548350:three_prime_UTR | 20.0% |
| ! | ACACGAAAAAAGAATGTAAA+GGG | - | chr4_1:42329092-42329111 | None:intergenic | 25.0% |
| ! | AACACGAAAAAAGAATGTAA+AGG | - | chr4_1:42329093-42329112 | None:intergenic | 25.0% |
| !! | AGACGTTTCGTAATAATTTT+TGG | - | chr4_1:42329171-42329190 | None:intergenic | 25.0% |
| ! | AAAATTTCAAAACCCAATTG+GGG | - | chr4_1:42329227-42329246 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGGGAATTTGC+AGG | + | chr4_1:42329275-42329294 | Msa0548350:intron | 25.0% |
| !! | GTTTTATCTAAGCTTTTAGA+TGG | + | chr4_1:42329297-42329316 | Msa0548350:CDS | 25.0% |
| !!! | GGTGATTTGTTAATGTTATT+TGG | + | chr4_1:42329356-42329375 | Msa0548350:intron | 25.0% |
| ! | AATTAATGACAAAACCGAAA+AGG | - | chr4_1:42329795-42329814 | None:intergenic | 25.0% |
| ! | CAAGAATACAATTATATTGC+AGG | + | chr4_1:42329876-42329895 | Msa0548350:intron | 25.0% |
| ! | AGAATACAATTATATTGCAG+GGG | + | chr4_1:42329878-42329897 | Msa0548350:intron | 25.0% |
| !!! | TGTTGAATCATTTTGTTTTG+TGG | + | chr4_1:42330095-42330114 | Msa0548350:intron | 25.0% |
| ! | TTGTATGATCTATCAATTGT+GGG | - | chr4_1:42330506-42330525 | None:intergenic | 25.0% |
| ! | TTTGTATGATCTATCAATTG+TGG | - | chr4_1:42330507-42330526 | None:intergenic | 25.0% |
| ! | TACAACTAATGCCAAATAAT+AGG | - | chr4_1:42330538-42330557 | None:intergenic | 25.0% |
| ! | AGTTGTAGTAGTAAAATGTA+AGG | + | chr4_1:42330551-42330570 | Msa0548350:intron | 25.0% |
| ! | GAATCATAACAATGTTTCTT+GGG | - | chr4_1:42330683-42330702 | None:intergenic | 25.0% |
| ! | TGAATCATAACAATGTTTCT+TGG | - | chr4_1:42330684-42330703 | None:intergenic | 25.0% |
| ! | ACTTGAAAGTTGAATAAAAC+AGG | - | chr4_1:42330739-42330758 | None:intergenic | 25.0% |
| ! | AAGTAGTAAATTCAAATGGT+TGG | - | chr4_1:42331087-42331106 | None:intergenic | 25.0% |
| ! | AGCAAAGTAGTAAATTCAAA+TGG | - | chr4_1:42331091-42331110 | None:intergenic | 25.0% |
| ! | GAATTTACTACTTTGCTTAT+AGG | + | chr4_1:42331094-42331113 | Msa0548350:intron | 25.0% |
| !! | AAAGAGATGATAGTTTTCTA+AGG | - | chr4_1:42331400-42331419 | None:intergenic | 25.0% |
| !!! | TCCATTATACATTCACTTTT+GGG | + | chr4_1:42331593-42331612 | Msa0548350:intron | 25.0% |
| ! | TTGTCCAATGTAAATTCATT+CGG | + | chr4_1:42332077-42332096 | Msa0548350:CDS | 25.0% |
| !! | TTTTCCGAATGAATTTACAT+TGG | - | chr4_1:42332084-42332103 | None:intergenic | 25.0% |
| ! | CAATAAAATAAGAAAGGGAA+AGG | + | chr4_1:42332465-42332484 | Msa0548350:three_prime_UTR | 25.0% |
| !! | GAAACTTTGATTTGAAAACG+TGG | + | chr4_1:42328865-42328884 | Msa0548350:five_prime_UTR | 30.0% |
| ! | AAAGAGTAGAAACAGTTTTC+AGG | - | chr4_1:42328968-42328987 | None:intergenic | 30.0% |
| TTATTACGAAACGTCTTAGA+TGG | + | chr4_1:42329175-42329194 | Msa0548350:intron | 30.0% | |
| TTAATGTTTGATGTGTGTCA+TGG | + | chr4_1:42329667-42329686 | Msa0548350:CDS | 30.0% | |
| ! | CTTTCCTAATTGGTTCATAT+CGG | + | chr4_1:42329816-42329835 | Msa0548350:intron | 30.0% |
| GAATACAATTATATTGCAGG+GGG | + | chr4_1:42329879-42329898 | Msa0548350:intron | 30.0% | |
| ACTGTATCATCTCAAGTTAA+CGG | - | chr4_1:42330375-42330394 | None:intergenic | 30.0% | |
| AAAATGTAAGGAAGTCTCTA+AGG | + | chr4_1:42330563-42330582 | Msa0548350:intron | 30.0% | |
| ATATAATCACTTGTTTCGGT+AGG | + | chr4_1:42330605-42330624 | Msa0548350:intron | 30.0% | |
| TAACAATGTTTCTTGGGATA+AGG | - | chr4_1:42330677-42330696 | None:intergenic | 30.0% | |
| ATAAAACACACACAGTTTGA+AGG | - | chr4_1:42330781-42330800 | None:intergenic | 30.0% | |
| CTGATTATCTTCAATGATGA+TGG | - | chr4_1:42330896-42330915 | None:intergenic | 30.0% | |
| TCTAATAAAACTTTAGCCTC+TGG | - | chr4_1:42330929-42330948 | None:intergenic | 30.0% | |
| TTTATTAGAGCAGGCATTAT+TGG | + | chr4_1:42330940-42330959 | Msa0548350:CDS | 30.0% | |
| AGGGAGAAAAACATATTGAA+AGG | + | chr4_1:42330977-42330996 | Msa0548350:CDS | 30.0% | |
| !! | ATGGTTGGTAAGAAATCAAA+GGG | - | chr4_1:42331072-42331091 | None:intergenic | 30.0% |
| !! | AATGGTTGGTAAGAAATCAA+AGG | - | chr4_1:42331073-42331092 | None:intergenic | 30.0% |
| TAGCAGGAAGTCTAATTATT+TGG | + | chr4_1:42331169-42331188 | Msa0548350:intron | 30.0% | |
| ! | GTCCATTATACATTCACTTT+TGG | + | chr4_1:42331592-42331611 | Msa0548350:intron | 30.0% |
| !! | CCATTATACATTCACTTTTG+GGG | + | chr4_1:42331594-42331613 | Msa0548350:intron | 30.0% |
| TACAGCAATGCAAATGTAAA+GGG | - | chr4_1:42331661-42331680 | None:intergenic | 30.0% | |
| TTACAGCAATGCAAATGTAA+AGG | - | chr4_1:42331662-42331681 | None:intergenic | 30.0% | |
| !! | TGAAGATTTTTATTTCTCGC+TGG | - | chr4_1:42331689-42331708 | None:intergenic | 30.0% |
| ! | CGAGATCTAATGTAATTTTC+AGG | + | chr4_1:42331743-42331762 | Msa0548350:intron | 30.0% |
| GATAACCATCAGTTTAGATA+TGG | - | chr4_1:42331940-42331959 | None:intergenic | 30.0% | |
| ATCTAAACTGATGGTTATCA+AGG | + | chr4_1:42331941-42331960 | Msa0548350:CDS | 30.0% | |
| AAATTTCGTAACATGAACGA+GGG | + | chr4_1:42332032-42332051 | Msa0548350:CDS | 30.0% | |
| AATTCATTCGGAAAAATGAG+CGG | + | chr4_1:42332089-42332108 | Msa0548350:CDS | 30.0% | |
| ! | ATCATCAACCCATTCATTTT+CGG | - | chr4_1:42332138-42332157 | None:intergenic | 30.0% |
| AGCAGTTATTCAGACTAACT+TGG | - | chr4_1:42328715-42328734 | None:intergenic | 35.0% | |
| ! | TTGATTTGAAAACGTGGAGA+AGG | + | chr4_1:42328871-42328890 | Msa0548350:five_prime_UTR | 35.0% |
| TAGTACGATTGAGAAGAGAA+GGG | - | chr4_1:42329001-42329020 | None:intergenic | 35.0% | |
| TAAAGGGAAAAGATTGAACC+TGG | - | chr4_1:42329076-42329095 | None:intergenic | 35.0% | |
| !!! | TTTTGTCGATTCAACACATC+TGG | - | chr4_1:42329333-42329352 | None:intergenic | 35.0% |
| TGGAAAGAATTGAATGTGTG+TGG | + | chr4_1:42329404-42329423 | Msa0548350:intron | 35.0% | |
| ! | TTGCATTATGCTGCTTACTA+TGG | + | chr4_1:42329700-42329719 | Msa0548350:CDS | 35.0% |
| ATCACCGATATGAACCAATT+AGG | - | chr4_1:42329823-42329842 | None:intergenic | 35.0% | |
| CGGTTTGTGAATATTAGAGA+CGG | + | chr4_1:42329908-42329927 | Msa0548350:CDS | 35.0% | |
| ATTGGTGAGATCTTATCAAG+TGG | - | chr4_1:42330284-42330303 | None:intergenic | 35.0% | |
| ATCTCACCAATGATGATCAA+TGG | + | chr4_1:42330293-42330312 | Msa0548350:intron | 35.0% | |
| CCAAATCCATTGATCATCAT+TGG | - | chr4_1:42330302-42330321 | None:intergenic | 35.0% | |
| ! | CCAATGATGATCAATGGATT+TGG | + | chr4_1:42330299-42330318 | Msa0548350:intron | 35.0% |
| TGGATTTGGATTTCCTATGA+AGG | + | chr4_1:42330313-42330332 | Msa0548350:intron | 35.0% | |
| AACTTGAGATTGAACTGTTG+AGG | + | chr4_1:42330441-42330460 | Msa0548350:intron | 35.0% | |
| GATCTATCAATTGTGGGATT+TGG | - | chr4_1:42330500-42330519 | None:intergenic | 35.0% | |
| ! | AAACAAGAGCACAATAGGAA+AGG | - | chr4_1:42330631-42330650 | None:intergenic | 35.0% |
| ! | ATAGCAAACAAGAGCACAAT+AGG | - | chr4_1:42330636-42330655 | None:intergenic | 35.0% |
| ! | AAACTGTGTGTGTTTTATGC+AGG | + | chr4_1:42330783-42330802 | Msa0548350:intron | 35.0% |
| TACTTCAAAGCAACCACATA+TGG | - | chr4_1:42330815-42330834 | None:intergenic | 35.0% | |
| !! | GTTGCTTTGAAGTACAAACA+TGG | + | chr4_1:42330821-42330840 | Msa0548350:CDS | 35.0% |
| AATCAGTGAACTTAATCCAG+AGG | + | chr4_1:42330910-42330929 | Msa0548350:CDS | 35.0% | |
| !!! | GGCTAAAGTTTTATTAGAGC+AGG | + | chr4_1:42330931-42330950 | Msa0548350:CDS | 35.0% |
| GGTGCAGTTGAATTGAATTA+TGG | + | chr4_1:42331115-42331134 | Msa0548350:intron | 35.0% | |
| GAGTTTATGCATAATTCGAC+AGG | - | chr4_1:42331270-42331289 | None:intergenic | 35.0% | |
| AACTCTGAGCTATTTGTCTT+TGG | + | chr4_1:42331285-42331304 | Msa0548350:intron | 35.0% | |
| TCTAAGCCTAAAAGGTAAGT+GGG | - | chr4_1:42331346-42331365 | None:intergenic | 35.0% | |
| ATCATCTCTTTACCATCTGT+AGG | + | chr4_1:42331409-42331428 | Msa0548350:intron | 35.0% | |
| CCCCAAAAGTGAATGTATAA+TGG | - | chr4_1:42331597-42331616 | None:intergenic | 35.0% | |
| ACATAGATTACAAGTCAGAG+AGG | - | chr4_1:42331635-42331654 | None:intergenic | 35.0% | |
| CTCGCAATAAGTATATAGTG+TGG | - | chr4_1:42331727-42331746 | None:intergenic | 35.0% | |
| !!! | TAATTTTCAGGTTAGCGAGA+CGG | + | chr4_1:42331755-42331774 | Msa0548350:intron | 35.0% |
| ATAATTGAAGTCCAAGACTG+TGG | + | chr4_1:42331810-42331829 | Msa0548350:CDS | 35.0% | |
| !! | CGAAATTTCCTTGATTTGCT+TGG | - | chr4_1:42332020-42332039 | None:intergenic | 35.0% |
| GAAATTTCGTAACATGAACG+AGG | + | chr4_1:42332031-42332050 | Msa0548350:CDS | 35.0% | |
| TGATTGCTTCCGAAAATGAA+TGG | + | chr4_1:42332126-42332145 | Msa0548350:CDS | 35.0% | |
| GATTGCTTCCGAAAATGAAT+GGG | + | chr4_1:42332127-42332146 | Msa0548350:CDS | 35.0% | |
| AAATAAGAAAGGGAAAGGCA+TGG | + | chr4_1:42332470-42332489 | Msa0548350:three_prime_UTR | 35.0% | |
| TATTCAGACTAACTTGGCTG+TGG | - | chr4_1:42328709-42328728 | None:intergenic | 40.0% | |
| TTTGAAAACGTGGAGAAGGA+TGG | + | chr4_1:42328875-42328894 | Msa0548350:exon | 40.0% | |
| TTGAAAACGTGGAGAAGGAT+GGG | + | chr4_1:42328876-42328895 | Msa0548350:exon | 40.0% | |
| ! | CAAAGTGGTCTTAGTTGTAG+AGG | + | chr4_1:42328900-42328919 | Msa0548350:CDS | 40.0% |
| TGTAGAGGTAGTCATGAACA+TGG | + | chr4_1:42328915-42328934 | Msa0548350:CDS | 40.0% | |
| GTAGTACGATTGAGAAGAGA+AGG | - | chr4_1:42329002-42329021 | None:intergenic | 40.0% | |
| ACTCCGAATTATCAGATGGA+CGG | - | chr4_1:42329122-42329141 | None:intergenic | 40.0% | |
| CTGAACTCCGAATTATCAGA+TGG | - | chr4_1:42329126-42329145 | None:intergenic | 40.0% | |
| AAAACCCAATTGGGGAACTT+GGG | - | chr4_1:42329219-42329238 | None:intergenic | 40.0% | |
| TGTGTTGAATCGACAAAAGC+AGG | + | chr4_1:42329335-42329354 | Msa0548350:CDS | 40.0% | |
| AATTCAGACCCCACTTATGT+TGG | + | chr4_1:42329487-42329506 | Msa0548350:intron | 40.0% | |
| GCATGGAAAGATTGAATGTG+TGG | + | chr4_1:42329517-42329536 | Msa0548350:CDS | 40.0% | |
| TGGTCATTCTTCTTGCCTTA+AGG | + | chr4_1:42329720-42329739 | Msa0548350:CDS | 40.0% | |
| !! | CAGCAGAAAGTATTGCCTTA+AGG | - | chr4_1:42329738-42329757 | None:intergenic | 40.0% |
| !! | GCTTCTTGGTTAGTCCTTTT+CGG | + | chr4_1:42329778-42329797 | Msa0548350:intron | 40.0% |
| GTGAATATTAGAGACGGTAG+AGG | + | chr4_1:42329914-42329933 | Msa0548350:CDS | 40.0% | |
| AACAGAATGTGCACACATTC+AGG | - | chr4_1:42329977-42329996 | None:intergenic | 40.0% | |
| TGTGCTTCAACTAGCAGATA+TGG | + | chr4_1:42330016-42330035 | Msa0548350:CDS | 40.0% | |
| GTGCTTCAACTAGCAGATAT+GGG | + | chr4_1:42330017-42330036 | Msa0548350:CDS | 40.0% | |
| AACGATGAGTCTGATAAGCT+TGG | + | chr4_1:42330060-42330079 | Msa0548350:intron | 40.0% | |
| TGCTATATTTGCAGATGTCC+TGG | + | chr4_1:42330128-42330147 | Msa0548350:intron | 40.0% | |
| GCTATATTTGCAGATGTCCT+GGG | + | chr4_1:42330129-42330148 | Msa0548350:intron | 40.0% | |
| CCTTTAGCTGCTAAATGAAG+AGG | - | chr4_1:42330161-42330180 | None:intergenic | 40.0% | |
| CCTCTTCATTTAGCAGCTAA+AGG | + | chr4_1:42330158-42330177 | Msa0548350:CDS | 40.0% | |
| CTTCATTTAGCAGCTAAAGG+AGG | + | chr4_1:42330161-42330180 | Msa0548350:CDS | 40.0% | |
| CATCCGCGAATTATTAGCAT+GGG | + | chr4_1:42330196-42330215 | Msa0548350:CDS | 40.0% | |
| ATCCGCGAATTATTAGCATG+GGG | + | chr4_1:42330197-42330216 | Msa0548350:CDS | 40.0% | |
| !! | AATGATGATGGCCATACAAG+AGG | - | chr4_1:42330884-42330903 | None:intergenic | 40.0% |
| AATGGATGACAACATCTCTG+AGG | + | chr4_1:42331036-42331055 | Msa0548350:CDS | 40.0% | |
| !! | GACAACATCTCTGAGGTAAT+TGG | + | chr4_1:42331043-42331062 | Msa0548350:intron | 40.0% |
| CTCTAAGCCTAAAAGGTAAG+TGG | - | chr4_1:42331347-42331366 | None:intergenic | 40.0% | |
| ! | TACCTTTTAGGCTTAGAGCT+CGG | + | chr4_1:42331349-42331368 | Msa0548350:intron | 40.0% |
| GGTAACTTCTAACCTACAGA+TGG | - | chr4_1:42331424-42331443 | None:intergenic | 40.0% | |
| ! | CATGATGATGATCGCTTGAT+GGG | - | chr4_1:42331461-42331480 | None:intergenic | 40.0% |
| ! | ACATGATGATGATCGCTTGA+TGG | - | chr4_1:42331462-42331481 | None:intergenic | 40.0% |
| CGATCATCATCATGTCAAAC+AGG | + | chr4_1:42331467-42331486 | Msa0548350:intron | 40.0% | |
| TAGATTACAAGTCAGAGAGG+CGG | - | chr4_1:42331632-42331651 | None:intergenic | 40.0% | |
| AAGCGCCATATCTAAACTGA+TGG | + | chr4_1:42331932-42331951 | Msa0548350:CDS | 40.0% | |
| ! | TTTGCTTGGCTTGAAACAAG+TGG | - | chr4_1:42332006-42332025 | None:intergenic | 40.0% |
| GTTTCAAGCCAAGCAAATCA+AGG | + | chr4_1:42332009-42332028 | Msa0548350:CDS | 40.0% | |
| ! | ATTTTCGGAAGCAATCATCC+CGG | - | chr4_1:42332123-42332142 | None:intergenic | 40.0% |
| CTCATCAGCAAAAACACAAC+AGG | - | chr4_1:42332181-42332200 | None:intergenic | 40.0% | |
| GCAACTATGCTTGATAAGCA+AGG | + | chr4_1:42332220-42332239 | Msa0548350:three_prime_UTR | 40.0% | |
| GAGAGAGAGAGAGAGAAGAA+GGG | - | chr4_1:42328787-42328806 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAGAAGA+AGG | - | chr4_1:42328788-42328807 | None:intergenic | 45.0% | |
| ! | CTCTTTCGTGCTGTTCAACA+TGG | + | chr4_1:42328939-42328958 | Msa0548350:CDS | 45.0% |
| TGGCAGCAGCAATATGAAGA+GGG | - | chr4_1:42329043-42329062 | None:intergenic | 45.0% | |
| TTGGCAGCAGCAATATGAAG+AGG | - | chr4_1:42329044-42329063 | None:intergenic | 45.0% | |
| CTTCATATTGCTGCTGCCAA+TGG | + | chr4_1:42329044-42329063 | Msa0548350:CDS | 45.0% | |
| TTGAACCTGGATCTGACCAT+TGG | - | chr4_1:42329063-42329082 | None:intergenic | 45.0% | |
| CCTCCGTCCATCTGATAATT+CGG | + | chr4_1:42329116-42329135 | Msa0548350:intron | 45.0% | |
| CAAAACCCAATTGGGGAACT+TGG | - | chr4_1:42329220-42329239 | None:intergenic | 45.0% | |
| CATTGCTGCCAACATAAGTG+GGG | - | chr4_1:42329498-42329517 | None:intergenic | 45.0% | |
| GCATTGCTGCCAACATAAGT+GGG | - | chr4_1:42329499-42329518 | None:intergenic | 45.0% | |
| TGCATTGCTGCCAACATAAG+TGG | - | chr4_1:42329500-42329519 | None:intergenic | 45.0% | |
| CTTATGTTGGCAGCAATGCA+TGG | + | chr4_1:42329500-42329519 | Msa0548350:CDS | 45.0% | |
| GTGGAAAAGTTGCTTGAAGC+TGG | + | chr4_1:42329536-42329555 | Msa0548350:CDS | 45.0% | |
| TATATTGCAGGGGGTTTGCA+CGG | + | chr4_1:42329888-42329907 | Msa0548350:intron | 45.0% | |
| GTGCACATTCTGTTGTGTAG+TGG | + | chr4_1:42329983-42330002 | Msa0548350:CDS | 45.0% | |
| !! | AAATGAAGAGGAGTACTCCC+AGG | - | chr4_1:42330149-42330168 | None:intergenic | 45.0% |
| GCATCCGCGAATTATTAGCA+TGG | + | chr4_1:42330195-42330214 | Msa0548350:CDS | 45.0% | |
| CACCCCATGCTAATAATTCG+CGG | - | chr4_1:42330202-42330221 | None:intergenic | 45.0% | |
| CGAATTATTAGCATGGGGTG+CGG | + | chr4_1:42330202-42330221 | Msa0548350:CDS | 45.0% | |
| !!! | CAGCGTGCTTTTTCCTTCAT+AGG | - | chr4_1:42330329-42330348 | None:intergenic | 45.0% |
| ! | CTGTGTGTGTTTTATGCAGG+CGG | + | chr4_1:42330786-42330805 | Msa0548350:intron | 45.0% |
| TGTGGAGATGGAAGAGAGTA+AGG | - | chr4_1:42331007-42331026 | None:intergenic | 45.0% | |
| ATTCGATCAGAGTGTGGAGA+TGG | - | chr4_1:42331019-42331038 | None:intergenic | 45.0% | |
| ATCTCCACACTCTGATCGAA+TGG | + | chr4_1:42331018-42331037 | Msa0548350:CDS | 45.0% | |
| TCATCCATTCGATCAGAGTG+TGG | - | chr4_1:42331025-42331044 | None:intergenic | 45.0% | |
| ! | GTCAAGCCCACTTACCTTTT+AGG | + | chr4_1:42331337-42331356 | Msa0548350:intron | 45.0% |
| ! | ACCTTTTAGGCTTAGAGCTC+GGG | + | chr4_1:42331350-42331369 | Msa0548350:intron | 45.0% |
| ! | TCTAAGGTAGCTCGTTGAGA+TGG | - | chr4_1:42331384-42331403 | None:intergenic | 45.0% |
| GAAGTTACCAATGCGTGTAG+CGG | + | chr4_1:42331435-42331454 | Msa0548350:intron | 45.0% | |
| AACACTCTGCTGTCACAACA+AGG | + | chr4_1:42331860-42331879 | Msa0548350:CDS | 45.0% | |
| CTTCGACAGAATGGACAGAT+GGG | - | chr4_1:42331915-42331934 | None:intergenic | 45.0% | |
| GGTAGAAACTCACGAAGACA+TGG | + | chr4_1:42331962-42331981 | Msa0548350:CDS | 45.0% | |
| CACGAAGACATGGATCTAGA+CGG | + | chr4_1:42331972-42331991 | Msa0548350:CDS | 45.0% | |
| AAGCAATCATCCCGGAACTA+CGG | - | chr4_1:42332115-42332134 | None:intergenic | 45.0% | |
| !! | AACAGGTGTCGACATCATTG+TGG | - | chr4_1:42332164-42332183 | None:intergenic | 45.0% |
| ! | GGAAAGGCATGGCCTATTAT+TGG | + | chr4_1:42332481-42332500 | Msa0548350:three_prime_UTR | 45.0% |
| !!! | AAAATTTGATTTTTTTTTTT+TGG | + | chr4_1:42329264-42329283 | Msa0548350:intron | 5.0% |
| !!! | AAATTTGATTTTTTTTTTTT+GGG | + | chr4_1:42329265-42329284 | Msa0548350:intron | 5.0% |
| AGACTAACTTGGCTGTGGCA+TGG | - | chr4_1:42328704-42328723 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAAGAAGGGA+GGG | - | chr4_1:42328783-42328802 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAAGAAGGG+AGG | - | chr4_1:42328784-42328803 | None:intergenic | 50.0% | |
| TGGAGAAGGATGGGTCAAAG+TGG | + | chr4_1:42328885-42328904 | Msa0548350:exon | 50.0% | |
| GGCAGCAGCAATATGAAGAG+GGG | - | chr4_1:42329042-42329061 | None:intergenic | 50.0% | |
| CCGAATTATCAGATGGACGG+AGG | - | chr4_1:42329119-42329138 | None:intergenic | 50.0% | |
| TTGGGGAACTTGGGCTCAAA+TGG | - | chr4_1:42329210-42329229 | None:intergenic | 50.0% | |
| TTGAGCCCAAGTTCCCCAAT+TGG | + | chr4_1:42329211-42329230 | Msa0548350:intron | 50.0% | |
| TGAGCCCAAGTTCCCCAATT+GGG | + | chr4_1:42329212-42329231 | Msa0548350:intron | 50.0% | |
| ACTAACCAAGAAGCAGCCAC+GGG | - | chr4_1:42329772-42329791 | None:intergenic | 50.0% | |
| GACTAACCAAGAAGCAGCCA+CGG | - | chr4_1:42329773-42329792 | None:intergenic | 50.0% | |
| ! | AGGTGCTACACCATTGCATC+TGG | + | chr4_1:42329934-42329953 | Msa0548350:CDS | 50.0% |
| ATCTGGCAGCTCGTCAAAGA+CGG | + | chr4_1:42329951-42329970 | Msa0548350:CDS | 50.0% | |
| GTCTCCAACGTGATGCATCT+GGG | + | chr4_1:42330228-42330247 | Msa0548350:CDS | 50.0% | |
| TGTACCCAGATGCATCACGT+TGG | - | chr4_1:42330235-42330254 | None:intergenic | 50.0% | |
| ATGCAGGCGGATACCATATG+TGG | + | chr4_1:42330799-42330818 | Msa0548350:intron | 50.0% | |
| CATCTGCACAGCCTCTTGTA+TGG | + | chr4_1:42330870-42330889 | Msa0548350:CDS | 50.0% | |
| AGGCATTATTGGACGCGAAC+AGG | + | chr4_1:42330951-42330970 | Msa0548350:CDS | 50.0% | |
| GGCATTATTGGACGCGAACA+GGG | + | chr4_1:42330952-42330971 | Msa0548350:CDS | 50.0% | |
| TATTGGACGCGAACAGGGAA+AGG | + | chr4_1:42330957-42330976 | Msa0548350:CDS | 50.0% | |
| ATTGGACGCGAACAGGGAAA+GGG | + | chr4_1:42330958-42330977 | Msa0548350:CDS | 50.0% | |
| GGCTTGACTAAGTCGTTACC+CGG | - | chr4_1:42331325-42331344 | None:intergenic | 50.0% | |
| ! | CCTTTTAGGCTTAGAGCTCG+GGG | + | chr4_1:42331351-42331370 | Msa0548350:intron | 50.0% |
| ! | ATGCTGCATCTGCTTTGAGC+AGG | + | chr4_1:42331782-42331801 | Msa0548350:CDS | 50.0% |
| TGCATTGTGCACACATCTGG+TGG | - | chr4_1:42331836-42331855 | None:intergenic | 50.0% | |
| GTGTGCATTGTGCACACATC+TGG | - | chr4_1:42331839-42331858 | None:intergenic | 50.0% | |
| GGGATGCGAAGTTGAAGTGT+TGG | - | chr4_1:42331886-42331905 | None:intergenic | 50.0% | |
| ACAGAATGGACAGATGGGTG+GGG | - | chr4_1:42331910-42331929 | None:intergenic | 50.0% | |
| GACAGAATGGACAGATGGGT+GGG | - | chr4_1:42331911-42331930 | None:intergenic | 50.0% | |
| GCTTCGACAGAATGGACAGA+TGG | - | chr4_1:42331916-42331935 | None:intergenic | 50.0% | |
| GATATGGCGCTTCGACAGAA+TGG | - | chr4_1:42331924-42331943 | None:intergenic | 50.0% | |
| GGTAGCAGCAGCAGTTTCAA+GGG | + | chr4_1:42332053-42332072 | Msa0548350:CDS | 50.0% | |
| AAAATGAGCGGCCGTAGTTC+CGG | + | chr4_1:42332101-42332120 | Msa0548350:CDS | 50.0% | |
| AGGGAGGGACAGTGTCACAT+AGG | - | chr4_1:42328764-42328783 | None:intergenic | 55.0% | |
| GAGAGAGAAGAAGGGAGGGA+GGG | - | chr4_1:42328779-42328798 | None:intergenic | 55.0% | |
| AGAGAGAGAAGAAGGGAGGG+AGG | - | chr4_1:42328780-42328799 | None:intergenic | 55.0% | |
| TGCTGCCAATGGTCAGATCC+AGG | + | chr4_1:42329055-42329074 | Msa0548350:CDS | 55.0% | |
| TGCTGCTCAATCTAGTCCCG+TGG | + | chr4_1:42329753-42329772 | Msa0548350:CDS | 55.0% | |
| TGACGAGCTGCCAGATGCAA+TGG | - | chr4_1:42329947-42329966 | None:intergenic | 55.0% | |
| CGTCTCCAACGTGATGCATC+TGG | + | chr4_1:42330227-42330246 | Msa0548350:CDS | 55.0% | |
| GACTAAGTCGTTACCCGGCT+GGG | - | chr4_1:42331320-42331339 | None:intergenic | 55.0% | |
| TGACTAAGTCGTTACCCGGC+TGG | - | chr4_1:42331321-42331340 | None:intergenic | 55.0% | |
| !! | CCCCGAGCTCTAAGCCTAAA+AGG | - | chr4_1:42331354-42331373 | None:intergenic | 55.0% |
| ACATCTGGTGGCCACAGTCT+TGG | - | chr4_1:42331824-42331843 | None:intergenic | 55.0% | |
| AATGGACAGATGGGTGGGGT+GGG | - | chr4_1:42331906-42331925 | None:intergenic | 55.0% | |
| CGACAGAATGGACAGATGGG+TGG | - | chr4_1:42331912-42331931 | None:intergenic | 55.0% | |
| GGGTAGCAGCAGCAGTTTCA+AGG | + | chr4_1:42332052-42332071 | Msa0548350:CDS | 55.0% | |
| AAATGAGCGGCCGTAGTTCC+GGG | + | chr4_1:42332102-42332121 | Msa0548350:CDS | 55.0% | |
| CTAGTCCCGTGGCTGCTTCT+TGG | + | chr4_1:42329764-42329783 | Msa0548350:CDS | 60.0% | |
| !! | TTTGGCTCTGCTGTCCCAGC+CGG | + | chr4_1:42331303-42331322 | Msa0548350:intron | 60.0% |
| ! | TGATGGGCCGCTACACGCAT+TGG | - | chr4_1:42331445-42331464 | None:intergenic | 60.0% |
| GAATGGACAGATGGGTGGGG+TGG | - | chr4_1:42331907-42331926 | None:intergenic | 60.0% | |
| !! | TTGGCTCTGCTGTCCCAGCC+GGG | + | chr4_1:42331304-42331323 | Msa0548350:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 42328684 | 42332509 | 42328684 | ID=Msa0548350;Name=Msa0548350 |
| chr4_1 | mRNA | 42328684 | 42332509 | 42328684 | ID=Msa0548350-mRNA-1;Parent=Msa0548350;Name=Msa0548350-mRNA-1;_AED=0.05;_eAED=0.05;_QI=190|1|1|1|0.87|0.77|9|340|447 |
| chr4_1 | exon | 42328684 | 42328791 | 42328684 | ID=Msa0548350-mRNA-1:exon:10901;Parent=Msa0548350-mRNA-1 |
| chr4_1 | exon | 42328812 | 42329076 | 42328812 | ID=Msa0548350-mRNA-1:exon:10902;Parent=Msa0548350-mRNA-1 |
| chr4_1 | exon | 42329297 | 42329356 | 42329297 | ID=Msa0548350-mRNA-1:exon:10903;Parent=Msa0548350-mRNA-1 |
| chr4_1 | exon | 42329494 | 42329565 | 42329494 | ID=Msa0548350-mRNA-1:exon:10904;Parent=Msa0548350-mRNA-1 |
| chr4_1 | exon | 42329664 | 42329785 | 42329664 | ID=Msa0548350-mRNA-1:exon:10905;Parent=Msa0548350-mRNA-1 |
| chr4_1 | exon | 42329898 | 42330038 | 42329898 | ID=Msa0548350-mRNA-1:exon:10906;Parent=Msa0548350-mRNA-1 |
| chr4_1 | exon | 42330142 | 42330249 | 42330142 | ID=Msa0548350-mRNA-1:exon:10907;Parent=Msa0548350-mRNA-1 |
| chr4_1 | exon | 42330805 | 42331057 | 42330805 | ID=Msa0548350-mRNA-1:exon:10908;Parent=Msa0548350-mRNA-1 |
| chr4_1 | exon | 42331765 | 42332509 | 42331765 | ID=Msa0548350-mRNA-1:exon:10909;Parent=Msa0548350-mRNA-1 |
| chr4_1 | five_prime_UTR | 42328684 | 42328791 | 42328684 | ID=Msa0548350-mRNA-1:five_prime_utr;Parent=Msa0548350-mRNA-1 |
| chr4_1 | five_prime_UTR | 42328812 | 42328893 | 42328812 | ID=Msa0548350-mRNA-1:five_prime_utr;Parent=Msa0548350-mRNA-1 |
| chr4_1 | CDS | 42328894 | 42329076 | 42328894 | ID=Msa0548350-mRNA-1:cds;Parent=Msa0548350-mRNA-1 |
| chr4_1 | CDS | 42329297 | 42329356 | 42329297 | ID=Msa0548350-mRNA-1:cds;Parent=Msa0548350-mRNA-1 |
| chr4_1 | CDS | 42329494 | 42329565 | 42329494 | ID=Msa0548350-mRNA-1:cds;Parent=Msa0548350-mRNA-1 |
| chr4_1 | CDS | 42329664 | 42329785 | 42329664 | ID=Msa0548350-mRNA-1:cds;Parent=Msa0548350-mRNA-1 |
| chr4_1 | CDS | 42329898 | 42330038 | 42329898 | ID=Msa0548350-mRNA-1:cds;Parent=Msa0548350-mRNA-1 |
| chr4_1 | CDS | 42330142 | 42330249 | 42330142 | ID=Msa0548350-mRNA-1:cds;Parent=Msa0548350-mRNA-1 |
| chr4_1 | CDS | 42330805 | 42331057 | 42330805 | ID=Msa0548350-mRNA-1:cds;Parent=Msa0548350-mRNA-1 |
| chr4_1 | CDS | 42331765 | 42332169 | 42331765 | ID=Msa0548350-mRNA-1:cds;Parent=Msa0548350-mRNA-1 |
| chr4_1 | three_prime_UTR | 42332170 | 42332509 | 42332170 | ID=Msa0548350-mRNA-1:three_prime_utr;Parent=Msa0548350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
