Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603290 | XP_013456116.1 | 97.987 | 447 | 9 | 0 | 1 | 447 | 1 | 447 | 0.0 | 909 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603290 | sp|Q94B55|XB31_ARATH | 67.834 | 457 | 133 | 5 | 1 | 446 | 1 | 454 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603290 | A0A072UKA7 | 97.987 | 447 | 9 | 0 | 1 | 447 | 1 | 447 | 0.0 | 909 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034530 | Msa0603290 | 0.802473 | 5.517508e-49 | -8.615850e-47 |
| Msa0603290 | Msa0644310 | 0.920807 | 8.014945e-88 | -8.615850e-47 |
| Msa0603290 | Msa0684110 | 0.884713 | 1.515637e-71 | -8.615850e-47 |
| Msa0603290 | Msa1395260 | 0.821419 | 4.078354e-53 | -8.615850e-47 |
| Msa0548350 | Msa0603290 | 0.879818 | 9.136360e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603290 | MtrunA17_Chr4g0031491 | 97.987 | 447 | 9 | 0 | 1 | 447 | 1 | 447 | 0.0 | 909 |
| Msa0603290 | MtrunA17_Chr2g0328031 | 74.944 | 447 | 106 | 5 | 1 | 445 | 1 | 443 | 0.0 | 692 |
| Msa0603290 | MtrunA17_Chr4g0010051 | 59.911 | 449 | 166 | 6 | 1 | 440 | 1 | 444 | 2.40e-180 | 511 |
| Msa0603290 | MtrunA17_Chr6g0472461 | 33.499 | 403 | 206 | 13 | 1 | 372 | 1 | 372 | 1.54e-45 | 165 |
| Msa0603290 | MtrunA17_Chr4g0073161 | 30.303 | 396 | 221 | 9 | 6 | 376 | 11 | 376 | 3.78e-38 | 145 |
| Msa0603290 | MtrunA17_Chr1g0203651 | 28.859 | 298 | 160 | 11 | 89 | 376 | 1 | 256 | 6.90e-21 | 94.0 |
| Msa0603290 | MtrunA17_Chr1g0212971 | 31.731 | 208 | 121 | 8 | 13 | 216 | 132 | 322 | 2.37e-16 | 81.6 |
| Msa0603290 | MtrunA17_Chr7g0263421 | 30.000 | 210 | 126 | 6 | 11 | 216 | 48 | 240 | 1.44e-15 | 79.0 |
| Msa0603290 | MtrunA17_Chr7g0276681 | 30.603 | 232 | 139 | 6 | 13 | 239 | 82 | 296 | 8.45e-15 | 76.6 |
| Msa0603290 | MtrunA17_Chr1g0211241 | 26.383 | 235 | 153 | 5 | 1 | 232 | 124 | 341 | 2.42e-14 | 75.1 |
| Msa0603290 | MtrunA17_Chr2g0327711 | 28.019 | 207 | 130 | 5 | 13 | 216 | 67 | 257 | 6.28e-14 | 73.9 |
| Msa0603290 | MtrunA17_Chr5g0418551 | 31.818 | 220 | 130 | 4 | 13 | 229 | 20 | 222 | 8.23e-14 | 71.2 |
| Msa0603290 | MtrunA17_Chr2g0293861 | 32.484 | 157 | 90 | 6 | 28 | 179 | 12 | 157 | 3.78e-13 | 68.6 |
| Msa0603290 | MtrunA17_Chr4g0030551 | 23.263 | 331 | 222 | 8 | 13 | 330 | 71 | 382 | 1.81e-12 | 69.3 |
| Msa0603290 | MtrunA17_Chr6g0461061 | 29.000 | 200 | 126 | 4 | 51 | 250 | 181 | 364 | 8.97e-12 | 67.0 |
| Msa0603290 | MtrunA17_Chr5g0439191 | 31.818 | 132 | 81 | 3 | 50 | 179 | 8 | 132 | 3.12e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603290 | AT2G28840.1 | 67.834 | 457 | 133 | 5 | 1 | 446 | 1 | 454 | 0.0 | 627 |
| Msa0603290 | AT2G28840.2 | 70.207 | 386 | 102 | 4 | 72 | 446 | 57 | 440 | 0.0 | 554 |
| Msa0603290 | AT5G07270.1 | 31.707 | 410 | 229 | 10 | 1 | 388 | 1 | 381 | 6.10e-43 | 158 |
| Msa0603290 | AT5G57740.1 | 29.442 | 394 | 222 | 10 | 6 | 372 | 11 | 375 | 6.59e-31 | 125 |
| Msa0603290 | AT5G02620.4 | 27.381 | 336 | 200 | 12 | 11 | 328 | 55 | 364 | 2.85e-19 | 90.9 |
| Msa0603290 | AT5G02620.1 | 27.381 | 336 | 200 | 12 | 11 | 328 | 55 | 364 | 2.85e-19 | 90.9 |
| Msa0603290 | AT5G02620.3 | 27.381 | 336 | 200 | 12 | 11 | 328 | 55 | 364 | 2.85e-19 | 90.9 |
| Msa0603290 | AT5G60070.1 | 26.786 | 336 | 207 | 12 | 13 | 330 | 74 | 388 | 3.07e-18 | 87.8 |
| Msa0603290 | AT5G60070.1 | 29.187 | 209 | 127 | 4 | 16 | 216 | 36 | 231 | 1.96e-12 | 69.7 |
| Msa0603290 | AT5G02620.5 | 30.583 | 206 | 122 | 5 | 11 | 212 | 55 | 243 | 1.04e-17 | 85.9 |
| Msa0603290 | AT5G02620.2 | 30.583 | 206 | 122 | 5 | 11 | 212 | 55 | 243 | 1.04e-17 | 85.9 |
| Msa0603290 | AT3G12360.1 | 31.674 | 221 | 127 | 10 | 13 | 226 | 130 | 333 | 1.72e-15 | 79.3 |
| Msa0603290 | AT3G12360.2 | 31.674 | 221 | 127 | 10 | 13 | 226 | 118 | 321 | 1.90e-15 | 79.0 |
| Msa0603290 | AT1G07710.2 | 26.409 | 337 | 207 | 12 | 11 | 330 | 65 | 377 | 6.92e-15 | 77.4 |
| Msa0603290 | AT1G07710.1 | 26.409 | 337 | 207 | 12 | 11 | 330 | 65 | 377 | 6.92e-15 | 77.4 |
| Msa0603290 | AT5G20350.1 | 26.613 | 248 | 159 | 6 | 7 | 248 | 22 | 252 | 1.95e-14 | 75.9 |
| Msa0603290 | AT3G04710.1 | 32.093 | 215 | 103 | 6 | 51 | 236 | 59 | 259 | 2.14e-14 | 75.5 |
| Msa0603290 | AT3G04710.3 | 32.093 | 215 | 103 | 6 | 51 | 236 | 283 | 483 | 3.80e-14 | 75.1 |
| Msa0603290 | AT3G04710.2 | 28.625 | 269 | 137 | 7 | 51 | 290 | 59 | 301 | 1.66e-13 | 72.8 |
| Msa0603290 | AT5G13530.1 | 25.592 | 211 | 133 | 5 | 16 | 216 | 472 | 668 | 1.51e-12 | 70.5 |
| Msa0603290 | AT5G13530.2 | 25.592 | 211 | 133 | 5 | 16 | 216 | 472 | 668 | 1.57e-12 | 70.5 |
| Msa0603290 | AT2G31820.1 | 26.749 | 243 | 162 | 6 | 13 | 253 | 190 | 418 | 3.43e-12 | 68.9 |
| Msa0603290 | AT3G24530.1 | 32.895 | 152 | 88 | 4 | 23 | 169 | 26 | 168 | 6.69e-12 | 67.8 |
Find 122 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTAGAGCAGGCCTTAT+TGG | 0.254482 | 4_2:+47658776 | Msa0603290:CDS |
| GGAAAGGCATGGCCTATTAT+TGG | 0.282536 | 4_2:+47660314 | Msa0603290:three_prime_UTR |
| CTAGTCCCGTGGCTGCTTCT+TGG | 0.292776 | 4_2:+47657602 | Msa0603290:CDS |
| AAAATGAGCGGCCGTAGTTC+CGG | 0.300237 | 4_2:+47659937 | Msa0603290:CDS |
| TGTGCTTCAACTAGCAGATA+TGG | 0.305279 | 4_2:+47657854 | Msa0603290:CDS |
| TTCCCTGTTCGCGTCCAATA+AGG | 0.329855 | 4_2:-47658790 | None:intergenic |
| CGTCTCCAACGTGATGCATC+TGG | 0.332475 | 4_2:+47658065 | Msa0603290:CDS |
| TGGTCATTCTTCTTGCCTTA+AGG | 0.368140 | 4_2:+47657558 | Msa0603290:CDS |
| AGGCCTTATTGGACGCGAAC+AGG | 0.370869 | 4_2:+47658787 | Msa0603290:CDS |
| GATAACCATCAGTTTAGATA+TGG | 0.374202 | 4_2:-47659773 | None:intergenic |
| TGTGGAGATGGAAGAGAGTA+AGG | 0.374735 | 4_2:-47658840 | None:intergenic |
| AAATGAGCGGCCGTAGTTCC+GGG | 0.375798 | 4_2:+47659938 | Msa0603290:CDS |
| ATCACATGACAACCAATAAT+AGG | 0.376232 | 4_2:-47660326 | None:intergenic |
| CGAAATTTCCTTGATTTGCT+TGG | 0.378282 | 4_2:-47659853 | None:intergenic |
| TTGCATTATGCTGCTTACTA+TGG | 0.392266 | 4_2:+47657538 | Msa0603290:CDS |
| TACTTCAAAGCAACCACATA+TGG | 0.395193 | 4_2:-47658648 | None:intergenic |
| AACAGAATGTGCACACATTC+AGG | 0.420204 | 4_2:-47657812 | None:intergenic |
| CATCTGCACAGCCTCTTGTA+TGG | 0.420700 | 4_2:+47658706 | Msa0603290:CDS |
| TTGTCCAATGTAAATTCATT+CGG | 0.426931 | 4_2:+47659913 | Msa0603290:CDS |
| CCTCTTCATTTAGCAGCTAA+AGG | 0.427567 | 4_2:+47657996 | Msa0603290:CDS |
| CTGATTATCTTCAATGATGA+TGG | 0.429013 | 4_2:-47658729 | None:intergenic |
| GGGTAGCAGCAGCAGTTTCA+AGG | 0.445286 | 4_2:+47659888 | Msa0603290:CDS |
| AGAGAGAGAAGAAGGGAGGG+AGG | 0.447791 | 4_2:-47656622 | None:intergenic |
| AGGTGCTACACCATTGCATC+TGG | 0.451079 | 4_2:+47657772 | Msa0603290:CDS |
| TGATTGCTTCCGAAAATGAA+TGG | 0.451396 | 4_2:+47659962 | Msa0603290:CDS |
| ACATCTGGTGGCCACAGTCT+TGG | 0.456216 | 4_2:-47659657 | None:intergenic |
| TCTAATAAAACTTTAGCCTC+TGG | 0.458151 | 4_2:-47658762 | None:intergenic |
| TGCTATATTTGCAGATGTCC+TGG | 0.458321 | 4_2:+47657966 | Msa0603290:intron |
| ATCTAAACTGATGGTTATCA+AGG | 0.465152 | 4_2:+47659777 | Msa0603290:CDS |
| GTGTGCATTGTGCACACATC+TGG | 0.471356 | 4_2:-47659672 | None:intergenic |
| GATATGGCGCTTCGACAGAA+TGG | 0.471448 | 4_2:-47659757 | None:intergenic |
| AATGAGCAATAAAATAAGAA+AGG | 0.473754 | 4_2:+47660292 | Msa0603290:three_prime_UTR |
| GTTTCAAGCCAAGCAAATCA+AGG | 0.478084 | 4_2:+47659845 | Msa0603290:CDS |
| GTGCTTCAACTAGCAGATAT+GGG | 0.478560 | 4_2:+47657855 | Msa0603290:CDS |
| GAGAGAGAAGAAGGGAGGGA+GGG | 0.484354 | 4_2:-47656621 | None:intergenic |
| CTTCATATTGCTGCTGCCAA+TGG | 0.485862 | 4_2:+47656888 | Msa0603290:CDS |
| TATTGGACGCGAACAGGGAA+AGG | 0.487813 | 4_2:+47658793 | Msa0603290:CDS |
| TGCTGCCAATGGTCAGATCC+AGG | 0.493489 | 4_2:+47656899 | Msa0603290:CDS |
| TGCATTGCTGCCAACATAAG+TGG | 0.493653 | 4_2:-47657339 | None:intergenic |
| CAGCAGAAAGTATTGCCTTA+AGG | 0.496959 | 4_2:-47657573 | None:intergenic |
| GGTAGCAGCAGCAGTTTCAA+GGG | 0.499150 | 4_2:+47659889 | Msa0603290:CDS |
| GCTATATTTGCAGATGTCCT+GGG | 0.514636 | 4_2:+47657967 | Msa0603290:intron |
| CATCCGCGAATTATTAGCAT+GGG | 0.514704 | 4_2:+47658034 | Msa0603290:CDS |
| CTCTTTCGTGCTGTTCAACA+TGG | 0.515412 | 4_2:+47656783 | Msa0603290:CDS |
| TTGATTTGAAAACGTGGAGA+AGG | 0.515471 | 4_2:+47656715 | Msa0603290:five_prime_UTR |
| TGTGTTGAATCGACAAAAGC+AGG | 0.516759 | 4_2:+47657189 | Msa0603290:CDS |
| ATCTCCACACTCTGATCGAA+TGG | 0.518796 | 4_2:+47658854 | Msa0603290:CDS |
| ATGCAGGCGGATACCATATG+TGG | 0.519878 | 4_2:+47658635 | Msa0603290:intron |
| ATGAGCAATAAAATAAGAAA+GGG | 0.522122 | 4_2:+47660293 | Msa0603290:three_prime_UTR |
| GTCTCCAACGTGATGCATCT+GGG | 0.525701 | 4_2:+47658066 | Msa0603290:CDS |
| AATGGACAGATGGGTGGGGT+GGG | 0.525799 | 4_2:-47659739 | None:intergenic |
| AGCAGTTATTCAGACTAACT+TGG | 0.526064 | 4_2:-47656557 | None:intergenic |
| ATGCTGCATCTGCTTTGAGC+AGG | 0.528277 | 4_2:+47659618 | Msa0603290:CDS |
| GACAGAATGGACAGATGGGT+GGG | 0.529180 | 4_2:-47659744 | None:intergenic |
| TTTGAAAACGTGGAGAAGGA+TGG | 0.530704 | 4_2:+47656719 | Msa0603290:exon |
| AGGGAGGGACAGTGTCACAT+AGG | 0.531010 | 4_2:-47656606 | None:intergenic |
| CACCCCATGCTAATAATTCG+CGG | 0.532650 | 4_2:-47658037 | None:intergenic |
| ATTCGATCAGAGTGTGGAGA+TGG | 0.534607 | 4_2:-47658852 | None:intergenic |
| GAATGGACAGATGGGTGGGG+TGG | 0.536558 | 4_2:-47659740 | None:intergenic |
| GTAGTACGATTGAGAAGAGA+AGG | 0.541763 | 4_2:-47656843 | None:intergenic |
| AATTCAGACCCCACTTATGT+TGG | 0.543384 | 4_2:+47657329 | Msa0603290:intron |
| CTTATGTTGGCAGCAATGCA+TGG | 0.544992 | 4_2:+47657342 | Msa0603290:CDS |
| CAAAGTGGTCTTAGTTGTAG+AGG | 0.545298 | 4_2:+47656744 | Msa0603290:CDS |
| CCTTTAGCTGCTAAATGAAG+AGG | 0.547668 | 4_2:-47657996 | None:intergenic |
| GACTAACCAAGAAGCAGCCA+CGG | 0.550497 | 4_2:-47657608 | None:intergenic |
| GATTGCTTCCGAAAATGAAT+GGG | 0.551989 | 4_2:+47659963 | Msa0603290:CDS |
| GCATTGCTGCCAACATAAGT+GGG | 0.556318 | 4_2:-47657338 | None:intergenic |
| AAGCAATCATCCCGGAACTA+CGG | 0.559960 | 4_2:-47659948 | None:intergenic |
| GGCCTTATTGGACGCGAACA+GGG | 0.567914 | 4_2:+47658788 | Msa0603290:CDS |
| TATTCAGACTAACTTGGCTG+TGG | 0.570278 | 4_2:-47656551 | None:intergenic |
| GTGAATATTAGAGACGGTAG+AGG | 0.570533 | 4_2:+47657752 | Msa0603290:CDS |
| GTGGAAAAGTTGCTTGAAGC+TGG | 0.573507 | 4_2:+47657378 | Msa0603290:CDS |
| TTGAAAACGTGGAGAAGGAT+GGG | 0.574196 | 4_2:+47656720 | Msa0603290:exon |
| CAATAAAATAAGAAAGGGAA+AGG | 0.577041 | 4_2:+47660298 | Msa0603290:three_prime_UTR |
| ATTGGACGCGAACAGGGAAA+GGG | 0.577168 | 4_2:+47658794 | Msa0603290:CDS |
| TTAATGTTTGATGTGTGTCA+TGG | 0.578777 | 4_2:+47657505 | Msa0603290:CDS |
| GCTTCGACAGAATGGACAGA+TGG | 0.579479 | 4_2:-47659749 | None:intergenic |
| ACAGAATGGACAGATGGGTG+GGG | 0.584465 | 4_2:-47659743 | None:intergenic |
| TTGAACCTGGATCTGACCAT+TGG | 0.585236 | 4_2:-47656904 | None:intergenic |
| GGTAGAAACTCACGAAGACA+TGG | 0.587372 | 4_2:+47659798 | Msa0603290:CDS |
| TGGCAGCAGCAATATGAAGA+GGG | 0.588977 | 4_2:-47656884 | None:intergenic |
| CAACTCAATGATAATAAATG+TGG | 0.589666 | 4_2:+47656687 | Msa0603290:five_prime_UTR |
| CGACAGAATGGACAGATGGG+TGG | 0.592181 | 4_2:-47659745 | None:intergenic |
| ATCTGGCAGCTCGTCAAAGA+CGG | 0.594811 | 4_2:+47657789 | Msa0603290:CDS |
| AGACTAACTTGGCTGTGGCA+TGG | 0.597086 | 4_2:-47656546 | None:intergenic |
| AAGCGCCATATCTAAACTGA+TGG | 0.601000 | 4_2:+47659768 | Msa0603290:CDS |
| TGACGAGCTGCCAGATGCAA+TGG | 0.602034 | 4_2:-47657782 | None:intergenic |
| GTGCACATTCTGTTGTGTAG+TGG | 0.607255 | 4_2:+47657821 | Msa0603290:CDS |
| AATGATGATGGCCATACAAG+AGG | 0.608678 | 4_2:-47658717 | None:intergenic |
| TGCTGCTCAATCTAGTCCCG+TGG | 0.608978 | 4_2:+47657591 | Msa0603290:CDS |
| GCAACTATGCTTGATAAGCA+AGG | 0.609839 | 4_2:+47660056 | Msa0603290:three_prime_UTR |
| GCATGGAAAGATTGAATGTG+TGG | 0.610223 | 4_2:+47657359 | Msa0603290:CDS |
| GCATCCGCGAATTATTAGCA+TGG | 0.610332 | 4_2:+47658033 | Msa0603290:CDS |
| CGAATTATTAGCATGGGGTG+CGG | 0.613204 | 4_2:+47658040 | Msa0603290:CDS |
| GGGATGCGAAGTTGAAGTGT+TGG | 0.613230 | 4_2:-47659719 | None:intergenic |
| CTTCATTTAGCAGCTAAAGG+AGG | 0.613756 | 4_2:+47657999 | Msa0603290:CDS |
| AAATGAAGAGGAGTACTCCC+AGG | 0.616255 | 4_2:-47657984 | None:intergenic |
| CTTCGACAGAATGGACAGAT+GGG | 0.616676 | 4_2:-47659748 | None:intergenic |
| TTGGCAGCAGCAATATGAAG+AGG | 0.619663 | 4_2:-47656885 | None:intergenic |
| AACAGGTGTCGACGTCATTG+TGG | 0.621894 | 4_2:-47659997 | None:intergenic |
| ACTAACCAAGAAGCAGCCAC+GGG | 0.627620 | 4_2:-47657607 | None:intergenic |
| AACACTCTGCTGTCACAACA+AGG | 0.631175 | 4_2:+47659696 | Msa0603290:CDS |
| AAATAAGAAAGGGAAAGGCA+TGG | 0.635946 | 4_2:+47660303 | Msa0603290:three_prime_UTR |
| TGTAGAGGTAGTCATGAACA+TGG | 0.643863 | 4_2:+47656759 | Msa0603290:CDS |
| CGGTTTGTGAATATTAGAGA+CGG | 0.645981 | 4_2:+47657746 | Msa0603290:CDS |
| TCATCCATTCGATCAGAGTG+TGG | 0.646169 | 4_2:-47658858 | None:intergenic |
| TGCATTGTGCACACATCTGG+TGG | 0.649232 | 4_2:-47659669 | None:intergenic |
| TAGTACGATTGAGAAGAGAA+GGG | 0.656985 | 4_2:-47656842 | None:intergenic |
| TGGAGAAGGATGGGTCAAAG+TGG | 0.658025 | 4_2:+47656729 | Msa0603290:exon |
| AATCAGTGAACTTAATCCAG+AGG | 0.659408 | 4_2:+47658746 | Msa0603290:CDS |
| GGCAGCAGCAATATGAAGAG+GGG | 0.664522 | 4_2:-47656883 | None:intergenic |
| CACGAAGACATGGATCTAGA+CGG | 0.665249 | 4_2:+47659808 | Msa0603290:CDS |
| TTTGCTTGGCTTGAAACAAG+TGG | 0.668168 | 4_2:-47659839 | None:intergenic |
| TGTACCCAGATGCATCACGT+TGG | 0.686205 | 4_2:-47658070 | None:intergenic |
| ATCCGCGAATTATTAGCATG+GGG | 0.692205 | 4_2:+47658035 | Msa0603290:CDS |
| GTTGCTTTGAAGTACAAACA+TGG | 0.699828 | 4_2:+47658657 | Msa0603290:CDS |
| AAATTTCGTAACATGAACGA+GGG | 0.699839 | 4_2:+47659868 | Msa0603290:CDS |
| GAAATTTCGTAACATGAACG+AGG | 0.700659 | 4_2:+47659867 | Msa0603290:CDS |
| GAAACTTTGATTTGAAAACG+TGG | 0.708844 | 4_2:+47656709 | Msa0603290:five_prime_UTR |
| CATTGCTGCCAACATAAGTG+GGG | 0.709787 | 4_2:-47657337 | None:intergenic |
| AATGGATGACAATATCTCTG+AGG | 0.711499 | 4_2:+47658872 | Msa0603290:CDS |
| ACAATTGAAGTCCAAGACTG+TGG | 0.711764 | 4_2:+47659646 | Msa0603290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTGAATTTTGATTTTAA+TGG | + | chr4_2:47657226-47657245 | Msa0603290:intron | 10.0% |
| !!! | TATCTTTAATTGTATTTTTT+TGG | + | chr4_2:47657303-47657322 | Msa0603290:intron | 10.0% |
| !! | AATAATTATGAAAAATTATC+AGG | + | chr4_2:47657480-47657499 | Msa0603290:intron | 10.0% |
| !!! | GATTATATTTTTCAAATTAT+AGG | - | chr4_2:47658431-47658450 | None:intergenic | 10.0% |
| !! | TATAAATTTAATAAGTTTGT+AGG | - | chr4_2:47658987-47659006 | None:intergenic | 10.0% |
| !! | TCATAAAATTGAAATAAACA+TGG | - | chr4_2:47657428-47657447 | None:intergenic | 15.0% |
| !!! | GATTTTAAAACATTTAACAA+TGG | + | chr4_2:47657691-47657710 | Msa0603290:intron | 15.0% |
| !! | AAATATGTAAACCTATTATT+TGG | + | chr4_2:47658362-47658381 | Msa0603290:intron | 15.0% |
| !! | AAAAATATAATCACTTGTTT+CGG | + | chr4_2:47658439-47658458 | Msa0603290:intron | 15.0% |
| !! | AAACTTATTAAATTTATAGC+AGG | + | chr4_2:47658989-47659008 | Msa0603290:intron | 15.0% |
| !!! | CTAATTATTTGGATATTTTT+CGG | + | chr4_2:47659016-47659035 | Msa0603290:intron | 15.0% |
| !!! | AAGAATTTTCTCAAATTTAA+TGG | - | chr4_2:47660193-47660212 | None:intergenic | 15.0% |
| !!! | AGACGTTTCATAATAATTTT+TGG | - | chr4_2:47657015-47657034 | None:intergenic | 20.0% |
| !! | AAAAATTCAAAACCCAATTA+GGG | - | chr4_2:47657071-47657090 | None:intergenic | 20.0% |
| !! | AAAAAATTCAAAACCCAATT+AGG | - | chr4_2:47657072-47657091 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGAGAATTTGC+AGG | + | chr4_2:47657129-47657148 | Msa0603290:intron | 20.0% |
| !! | AAAATTGAAATAAACATGGA+GGG | - | chr4_2:47657424-47657443 | None:intergenic | 20.0% |
| !! | TAAAATTGAAATAAACATGG+AGG | - | chr4_2:47657425-47657444 | None:intergenic | 20.0% |
| !! | TCATTAATTTCTTTCCTAAT+TGG | + | chr4_2:47657644-47657663 | Msa0603290:intron | 20.0% |
| !! | AAGAATACAATTATATTGCA+GGG | + | chr4_2:47657715-47657734 | Msa0603290:intron | 20.0% |
| !!! | TGTTTGCTATTTTTCAATTT+AGG | + | chr4_2:47658484-47658503 | Msa0603290:intron | 20.0% |
| !! | TTTAACTGATCAAAATTAGA+AGG | - | chr4_2:47659083-47659102 | None:intergenic | 20.0% |
| !! | GGTAAAATGAAAGTAAAAAA+AGG | + | chr4_2:47660077-47660096 | Msa0603290:three_prime_UTR | 20.0% |
| !!! | TTCTTTTTTCTCATTAGTTA+AGG | + | chr4_2:47660208-47660227 | Msa0603290:three_prime_UTR | 20.0% |
| !!! | TACACAATACATTTTCTTTA+TGG | - | chr4_2:47660243-47660262 | None:intergenic | 20.0% |
| !! | AATGAGCAATAAAATAAGAA+AGG | + | chr4_2:47660292-47660311 | Msa0603290:three_prime_UTR | 20.0% |
| !! | ATGAGCAATAAAATAAGAAA+GGG | + | chr4_2:47660293-47660312 | Msa0603290:three_prime_UTR | 20.0% |
| ! | CAACTCAATGATAATAAATG+TGG | + | chr4_2:47656687-47656706 | Msa0603290:five_prime_UTR | 25.0% |
| ! | ACACGAAAAAAGAATGTAAA+GGG | - | chr4_2:47656936-47656955 | None:intergenic | 25.0% |
| ! | AACACGAAAAAAGAATGTAA+AGG | - | chr4_2:47656937-47656956 | None:intergenic | 25.0% |
| ! | TTATTATGAAACGTCTTAGA+TGG | + | chr4_2:47657019-47657038 | Msa0603290:intron | 25.0% |
| ! | TATTATGAAACGTCTTAGAT+GGG | + | chr4_2:47657020-47657039 | Msa0603290:intron | 25.0% |
| !! | GTTTTACATAAGCTTTTAGA+TGG | + | chr4_2:47657151-47657170 | Msa0603290:CDS | 25.0% |
| ! | AATTAATGACAAAACCGAAA+AGG | - | chr4_2:47657633-47657652 | None:intergenic | 25.0% |
| ! | CAAGAATACAATTATATTGC+AGG | + | chr4_2:47657714-47657733 | Msa0603290:intron | 25.0% |
| ! | AGAATACAATTATATTGCAG+GGG | + | chr4_2:47657716-47657735 | Msa0603290:intron | 25.0% |
| !!! | TGTTGAATCATTTTGTTTTG+TGG | + | chr4_2:47657933-47657952 | Msa0603290:intron | 25.0% |
| ! | TTGTATGATCTATCAATTGT+GGG | - | chr4_2:47658344-47658363 | None:intergenic | 25.0% |
| ! | TTTGTATGATCTATCAATTG+TGG | - | chr4_2:47658345-47658364 | None:intergenic | 25.0% |
| ! | TACAACTAATGCCAAATAAT+AGG | - | chr4_2:47658376-47658395 | None:intergenic | 25.0% |
| ! | AGTTGTAGTAGTAAAATGTA+AGG | + | chr4_2:47658389-47658408 | Msa0603290:intron | 25.0% |
| ! | GAATCATAACAATGTTTCTT+GGG | - | chr4_2:47658521-47658540 | None:intergenic | 25.0% |
| ! | TGAATCATAACAATGTTTCT+TGG | - | chr4_2:47658522-47658541 | None:intergenic | 25.0% |
| ! | ACTTGAAAGTTGAATAAAAC+AGG | - | chr4_2:47658577-47658596 | None:intergenic | 25.0% |
| ! | AAGTAGTAAATTCAAATGGT+TGG | - | chr4_2:47658923-47658942 | None:intergenic | 25.0% |
| ! | AGCAAAGTAGTAAATTCAAA+TGG | - | chr4_2:47658927-47658946 | None:intergenic | 25.0% |
| ! | GAATTTACTACTTTGCTTAT+AGG | + | chr4_2:47658930-47658949 | Msa0603290:intron | 25.0% |
| !! | AAAGAGATGATAGTTTTCTA+AGG | - | chr4_2:47659236-47659255 | None:intergenic | 25.0% |
| !!! | TCCATTATACATTCACTTTT+GGG | + | chr4_2:47659429-47659448 | Msa0603290:intron | 25.0% |
| ! | TTGTCCAATGTAAATTCATT+CGG | + | chr4_2:47659913-47659932 | Msa0603290:CDS | 25.0% |
| !! | TTTTCCGAATGAATTTACAT+TGG | - | chr4_2:47659920-47659939 | None:intergenic | 25.0% |
| ! | CAATAAAATAAGAAAGGGAA+AGG | + | chr4_2:47660298-47660317 | Msa0603290:three_prime_UTR | 25.0% |
| !! | GAAACTTTGATTTGAAAACG+TGG | + | chr4_2:47656709-47656728 | Msa0603290:five_prime_UTR | 30.0% |
| ! | AAAGAGTAGAAACAGTTTTC+AGG | - | chr4_2:47656812-47656831 | None:intergenic | 30.0% |
| TTAATGTTTGATGTGTGTCA+TGG | + | chr4_2:47657505-47657524 | Msa0603290:CDS | 30.0% | |
| ! | CTTTCCTAATTGGTTCATAT+CGG | + | chr4_2:47657654-47657673 | Msa0603290:intron | 30.0% |
| GAATACAATTATATTGCAGG+GGG | + | chr4_2:47657717-47657736 | Msa0603290:intron | 30.0% | |
| ACTGTATCATCTCAAGTTAA+CGG | - | chr4_2:47658213-47658232 | None:intergenic | 30.0% | |
| AAAATGTAAGGAAGTCTCTA+AGG | + | chr4_2:47658401-47658420 | Msa0603290:intron | 30.0% | |
| ATATAATCACTTGTTTCGGT+AGG | + | chr4_2:47658443-47658462 | Msa0603290:intron | 30.0% | |
| TAACAATGTTTCTTGGGATA+AGG | - | chr4_2:47658515-47658534 | None:intergenic | 30.0% | |
| CTGATTATCTTCAATGATGA+TGG | - | chr4_2:47658732-47658751 | None:intergenic | 30.0% | |
| TCTAATAAAACTTTAGCCTC+TGG | - | chr4_2:47658765-47658784 | None:intergenic | 30.0% | |
| AGGGAGAAAAACATATTGAA+AGG | + | chr4_2:47658813-47658832 | Msa0603290:CDS | 30.0% | |
| !! | ATGGTTGGTAAGAAATCAAA+GGG | - | chr4_2:47658908-47658927 | None:intergenic | 30.0% |
| !! | AATGGTTGGTAAGAAATCAA+AGG | - | chr4_2:47658909-47658928 | None:intergenic | 30.0% |
| TAGCAGGAAGTCTAATTATT+TGG | + | chr4_2:47659005-47659024 | Msa0603290:intron | 30.0% | |
| ! | GTCCATTATACATTCACTTT+TGG | + | chr4_2:47659428-47659447 | Msa0603290:intron | 30.0% |
| !! | CCATTATACATTCACTTTTG+GGG | + | chr4_2:47659430-47659449 | Msa0603290:intron | 30.0% |
| TACAGCAATGCAAATGTAAA+GGG | - | chr4_2:47659497-47659516 | None:intergenic | 30.0% | |
| TTACAGCAATGCAAATGTAA+AGG | - | chr4_2:47659498-47659517 | None:intergenic | 30.0% | |
| !! | TGAAGATTTTTATTTCTCGC+TGG | - | chr4_2:47659525-47659544 | None:intergenic | 30.0% |
| ! | CGAGATCTAATGTAATTTTC+AGG | + | chr4_2:47659579-47659598 | Msa0603290:intron | 30.0% |
| GATAACCATCAGTTTAGATA+TGG | - | chr4_2:47659776-47659795 | None:intergenic | 30.0% | |
| ATCTAAACTGATGGTTATCA+AGG | + | chr4_2:47659777-47659796 | Msa0603290:CDS | 30.0% | |
| AAATTTCGTAACATGAACGA+GGG | + | chr4_2:47659868-47659887 | Msa0603290:CDS | 30.0% | |
| AATTCATTCGGAAAAATGAG+CGG | + | chr4_2:47659925-47659944 | Msa0603290:CDS | 30.0% | |
| ! | ATCATCAACCCATTCATTTT+CGG | - | chr4_2:47659974-47659993 | None:intergenic | 30.0% |
| AGCAGTTATTCAGACTAACT+TGG | - | chr4_2:47656560-47656579 | None:intergenic | 35.0% | |
| ! | TTGATTTGAAAACGTGGAGA+AGG | + | chr4_2:47656715-47656734 | Msa0603290:five_prime_UTR | 35.0% |
| TAGTACGATTGAGAAGAGAA+GGG | - | chr4_2:47656845-47656864 | None:intergenic | 35.0% | |
| TAAAGGGAAAAGATTGAACC+TGG | - | chr4_2:47656920-47656939 | None:intergenic | 35.0% | |
| TTGAACTCCGAATTATCAGA+TGG | - | chr4_2:47656970-47656989 | None:intergenic | 35.0% | |
| AAAACCCAATTAGGGAACTT+GGG | - | chr4_2:47657063-47657082 | None:intergenic | 35.0% | |
| !!! | TTTTGTCGATTCAACACATC+TGG | - | chr4_2:47657187-47657206 | None:intergenic | 35.0% |
| TGGAAAGAATTGAATGTGTG+TGG | + | chr4_2:47657246-47657265 | Msa0603290:intron | 35.0% | |
| ! | TTGCATTATGCTGCTTACTA+TGG | + | chr4_2:47657538-47657557 | Msa0603290:CDS | 35.0% |
| ATCACCGATATGAACCAATT+AGG | - | chr4_2:47657661-47657680 | None:intergenic | 35.0% | |
| CGGTTTGTGAATATTAGAGA+CGG | + | chr4_2:47657746-47657765 | Msa0603290:CDS | 35.0% | |
| ATTGGTGAGATCTTATCAAG+TGG | - | chr4_2:47658122-47658141 | None:intergenic | 35.0% | |
| ATCTCACCAATGATGATCAA+TGG | + | chr4_2:47658131-47658150 | Msa0603290:intron | 35.0% | |
| CCAAATCCATTGATCATCAT+TGG | - | chr4_2:47658140-47658159 | None:intergenic | 35.0% | |
| ! | CCAATGATGATCAATGGATT+TGG | + | chr4_2:47658137-47658156 | Msa0603290:intron | 35.0% |
| ! | CAATGGATTTGGATTTCCTA+TGG | + | chr4_2:47658148-47658167 | Msa0603290:intron | 35.0% |
| AACTTGAGATTGAACTGTTG+AGG | + | chr4_2:47658279-47658298 | Msa0603290:intron | 35.0% | |
| GATCTATCAATTGTGGGATT+TGG | - | chr4_2:47658338-47658357 | None:intergenic | 35.0% | |
| ! | AAACAAGAGCACAATAGGAA+AGG | - | chr4_2:47658469-47658488 | None:intergenic | 35.0% |
| ! | ATAGCAAACAAGAGCACAAT+AGG | - | chr4_2:47658474-47658493 | None:intergenic | 35.0% |
| GCATAAAACACACAGTTTGA+AGG | - | chr4_2:47658619-47658638 | None:intergenic | 35.0% | |
| ! | TCAAACTGTGTGTTTTATGC+AGG | + | chr4_2:47658619-47658638 | Msa0603290:intron | 35.0% |
| TACTTCAAAGCAACCACATA+TGG | - | chr4_2:47658651-47658670 | None:intergenic | 35.0% | |
| !! | GTTGCTTTGAAGTACAAACA+TGG | + | chr4_2:47658657-47658676 | Msa0603290:CDS | 35.0% |
| AATCAGTGAACTTAATCCAG+AGG | + | chr4_2:47658746-47658765 | Msa0603290:CDS | 35.0% | |
| !!! | GGCTAAAGTTTTATTAGAGC+AGG | + | chr4_2:47658767-47658786 | Msa0603290:CDS | 35.0% |
| ! | TTTATTAGAGCAGGCCTTAT+TGG | + | chr4_2:47658776-47658795 | Msa0603290:CDS | 35.0% |
| AATGGATGACAATATCTCTG+AGG | + | chr4_2:47658872-47658891 | Msa0603290:CDS | 35.0% | |
| !! | GACAATATCTCTGAGGTAAT+TGG | + | chr4_2:47658879-47658898 | Msa0603290:intron | 35.0% |
| GGTGCAGTTGAATTGAATTA+TGG | + | chr4_2:47658951-47658970 | Msa0603290:intron | 35.0% | |
| GAGTTTATGCATAATTCGAC+AGG | - | chr4_2:47659106-47659125 | None:intergenic | 35.0% | |
| AACTCTGAGCTATTTGTCTT+TGG | + | chr4_2:47659121-47659140 | Msa0603290:intron | 35.0% | |
| TCTAAGCCTAAAAGGTAAGT+GGG | - | chr4_2:47659182-47659201 | None:intergenic | 35.0% | |
| ATCATCTCTTTACCATCTGT+AGG | + | chr4_2:47659245-47659264 | Msa0603290:intron | 35.0% | |
| CCCCAAAAGTGAATGTATAA+TGG | - | chr4_2:47659433-47659452 | None:intergenic | 35.0% | |
| ACATAGATTACAAGTCAGAG+AGG | - | chr4_2:47659471-47659490 | None:intergenic | 35.0% | |
| CTCGCAATAAGTATATAGTG+TGG | - | chr4_2:47659563-47659582 | None:intergenic | 35.0% | |
| !!! | TAATTTTCAGGTTAGCGAGA+CGG | + | chr4_2:47659591-47659610 | Msa0603290:intron | 35.0% |
| !! | CGAAATTTCCTTGATTTGCT+TGG | - | chr4_2:47659856-47659875 | None:intergenic | 35.0% |
| GAAATTTCGTAACATGAACG+AGG | + | chr4_2:47659867-47659886 | Msa0603290:CDS | 35.0% | |
| TGATTGCTTCCGAAAATGAA+TGG | + | chr4_2:47659962-47659981 | Msa0603290:CDS | 35.0% | |
| GATTGCTTCCGAAAATGAAT+GGG | + | chr4_2:47659963-47659982 | Msa0603290:CDS | 35.0% | |
| AAATAAGAAAGGGAAAGGCA+TGG | + | chr4_2:47660303-47660322 | Msa0603290:three_prime_UTR | 35.0% | |
| TATTCAGACTAACTTGGCTG+TGG | - | chr4_2:47656554-47656573 | None:intergenic | 40.0% | |
| TTTGAAAACGTGGAGAAGGA+TGG | + | chr4_2:47656719-47656738 | Msa0603290:exon | 40.0% | |
| TTGAAAACGTGGAGAAGGAT+GGG | + | chr4_2:47656720-47656739 | Msa0603290:exon | 40.0% | |
| ! | CAAAGTGGTCTTAGTTGTAG+AGG | + | chr4_2:47656744-47656763 | Msa0603290:CDS | 40.0% |
| TGTAGAGGTAGTCATGAACA+TGG | + | chr4_2:47656759-47656778 | Msa0603290:CDS | 40.0% | |
| GTAGTACGATTGAGAAGAGA+AGG | - | chr4_2:47656846-47656865 | None:intergenic | 40.0% | |
| ACTCCGAATTATCAGATGGA+CGG | - | chr4_2:47656966-47656985 | None:intergenic | 40.0% | |
| CAAAACCCAATTAGGGAACT+TGG | - | chr4_2:47657064-47657083 | None:intergenic | 40.0% | |
| TGTGTTGAATCGACAAAAGC+AGG | + | chr4_2:47657189-47657208 | Msa0603290:CDS | 40.0% | |
| AATTCAGACCCCACTTATGT+TGG | + | chr4_2:47657329-47657348 | Msa0603290:intron | 40.0% | |
| GCATGGAAAGATTGAATGTG+TGG | + | chr4_2:47657359-47657378 | Msa0603290:CDS | 40.0% | |
| TGGTCATTCTTCTTGCCTTA+AGG | + | chr4_2:47657558-47657577 | Msa0603290:CDS | 40.0% | |
| !! | CAGCAGAAAGTATTGCCTTA+AGG | - | chr4_2:47657576-47657595 | None:intergenic | 40.0% |
| !! | GCTTCTTGGTTAGTCCTTTT+CGG | + | chr4_2:47657616-47657635 | Msa0603290:intron | 40.0% |
| GTGAATATTAGAGACGGTAG+AGG | + | chr4_2:47657752-47657771 | Msa0603290:CDS | 40.0% | |
| AACAGAATGTGCACACATTC+AGG | - | chr4_2:47657815-47657834 | None:intergenic | 40.0% | |
| TGTGCTTCAACTAGCAGATA+TGG | + | chr4_2:47657854-47657873 | Msa0603290:CDS | 40.0% | |
| GTGCTTCAACTAGCAGATAT+GGG | + | chr4_2:47657855-47657874 | Msa0603290:CDS | 40.0% | |
| AACGATGAGTCTGATAAGCT+TGG | + | chr4_2:47657898-47657917 | Msa0603290:intron | 40.0% | |
| TGCTATATTTGCAGATGTCC+TGG | + | chr4_2:47657966-47657985 | Msa0603290:intron | 40.0% | |
| GCTATATTTGCAGATGTCCT+GGG | + | chr4_2:47657967-47657986 | Msa0603290:intron | 40.0% | |
| CCTTTAGCTGCTAAATGAAG+AGG | - | chr4_2:47657999-47658018 | None:intergenic | 40.0% | |
| CCTCTTCATTTAGCAGCTAA+AGG | + | chr4_2:47657996-47658015 | Msa0603290:CDS | 40.0% | |
| CTTCATTTAGCAGCTAAAGG+AGG | + | chr4_2:47657999-47658018 | Msa0603290:CDS | 40.0% | |
| CATCCGCGAATTATTAGCAT+GGG | + | chr4_2:47658034-47658053 | Msa0603290:CDS | 40.0% | |
| ATCCGCGAATTATTAGCATG+GGG | + | chr4_2:47658035-47658054 | Msa0603290:CDS | 40.0% | |
| TGGATTTGGATTTCCTATGG+AGG | + | chr4_2:47658151-47658170 | Msa0603290:intron | 40.0% | |
| ! | AACTGTGTGTTTTATGCAGG+CGG | + | chr4_2:47658622-47658641 | Msa0603290:intron | 40.0% |
| !! | AATGATGATGGCCATACAAG+AGG | - | chr4_2:47658720-47658739 | None:intergenic | 40.0% |
| CTCTAAGCCTAAAAGGTAAG+TGG | - | chr4_2:47659183-47659202 | None:intergenic | 40.0% | |
| ! | TACCTTTTAGGCTTAGAGCT+CGG | + | chr4_2:47659185-47659204 | Msa0603290:intron | 40.0% |
| !!! | GTTTTCTAAGGTAGCTCGTT+GGG | - | chr4_2:47659224-47659243 | None:intergenic | 40.0% |
| !!! | AGTTTTCTAAGGTAGCTCGT+TGG | - | chr4_2:47659225-47659244 | None:intergenic | 40.0% |
| GGTAACTTCTAACCTACAGA+TGG | - | chr4_2:47659260-47659279 | None:intergenic | 40.0% | |
| ! | CATGATGATGATCGCTTGAT+GGG | - | chr4_2:47659297-47659316 | None:intergenic | 40.0% |
| ! | ACATGATGATGATCGCTTGA+TGG | - | chr4_2:47659298-47659317 | None:intergenic | 40.0% |
| CGATCATCATCATGTCAAAC+AGG | + | chr4_2:47659303-47659322 | Msa0603290:intron | 40.0% | |
| TAGATTACAAGTCAGAGAGG+CGG | - | chr4_2:47659468-47659487 | None:intergenic | 40.0% | |
| ACAATTGAAGTCCAAGACTG+TGG | + | chr4_2:47659646-47659665 | Msa0603290:CDS | 40.0% | |
| AAGCGCCATATCTAAACTGA+TGG | + | chr4_2:47659768-47659787 | Msa0603290:CDS | 40.0% | |
| ! | TTTGCTTGGCTTGAAACAAG+TGG | - | chr4_2:47659842-47659861 | None:intergenic | 40.0% |
| GTTTCAAGCCAAGCAAATCA+AGG | + | chr4_2:47659845-47659864 | Msa0603290:CDS | 40.0% | |
| ! | ATTTTCGGAAGCAATCATCC+CGG | - | chr4_2:47659959-47659978 | None:intergenic | 40.0% |
| CTCATCAGCAAAAACACAAC+AGG | - | chr4_2:47660017-47660036 | None:intergenic | 40.0% | |
| GCAACTATGCTTGATAAGCA+AGG | + | chr4_2:47660056-47660075 | Msa0603290:three_prime_UTR | 40.0% | |
| GAGAGAGAGAGAGAGAAGAA+GGG | - | chr4_2:47656632-47656651 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAGAAGA+AGG | - | chr4_2:47656633-47656652 | None:intergenic | 45.0% | |
| ! | CTCTTTCGTGCTGTTCAACA+TGG | + | chr4_2:47656783-47656802 | Msa0603290:CDS | 45.0% |
| TGGCAGCAGCAATATGAAGA+GGG | - | chr4_2:47656887-47656906 | None:intergenic | 45.0% | |
| TTGGCAGCAGCAATATGAAG+AGG | - | chr4_2:47656888-47656907 | None:intergenic | 45.0% | |
| CTTCATATTGCTGCTGCCAA+TGG | + | chr4_2:47656888-47656907 | Msa0603290:CDS | 45.0% | |
| TTGAACCTGGATCTGACCAT+TGG | - | chr4_2:47656907-47656926 | None:intergenic | 45.0% | |
| CCTCCGTCCATCTGATAATT+CGG | + | chr4_2:47656960-47656979 | Msa0603290:intron | 45.0% | |
| TTAGGGAACTTGGGCTCAAA+TGG | - | chr4_2:47657054-47657073 | None:intergenic | 45.0% | |
| TTGAGCCCAAGTTCCCTAAT+TGG | + | chr4_2:47657055-47657074 | Msa0603290:intron | 45.0% | |
| TGAGCCCAAGTTCCCTAATT+GGG | + | chr4_2:47657056-47657075 | Msa0603290:intron | 45.0% | |
| CATTGCTGCCAACATAAGTG+GGG | - | chr4_2:47657340-47657359 | None:intergenic | 45.0% | |
| GCATTGCTGCCAACATAAGT+GGG | - | chr4_2:47657341-47657360 | None:intergenic | 45.0% | |
| TGCATTGCTGCCAACATAAG+TGG | - | chr4_2:47657342-47657361 | None:intergenic | 45.0% | |
| CTTATGTTGGCAGCAATGCA+TGG | + | chr4_2:47657342-47657361 | Msa0603290:CDS | 45.0% | |
| GTGGAAAAGTTGCTTGAAGC+TGG | + | chr4_2:47657378-47657397 | Msa0603290:CDS | 45.0% | |
| TATATTGCAGGGGGTTTGCA+CGG | + | chr4_2:47657726-47657745 | Msa0603290:intron | 45.0% | |
| GTGCACATTCTGTTGTGTAG+TGG | + | chr4_2:47657821-47657840 | Msa0603290:CDS | 45.0% | |
| !! | AAATGAAGAGGAGTACTCCC+AGG | - | chr4_2:47657987-47658006 | None:intergenic | 45.0% |
| GCATCCGCGAATTATTAGCA+TGG | + | chr4_2:47658033-47658052 | Msa0603290:CDS | 45.0% | |
| CACCCCATGCTAATAATTCG+CGG | - | chr4_2:47658040-47658059 | None:intergenic | 45.0% | |
| CGAATTATTAGCATGGGGTG+CGG | + | chr4_2:47658040-47658059 | Msa0603290:CDS | 45.0% | |
| TGTGGAGATGGAAGAGAGTA+AGG | - | chr4_2:47658843-47658862 | None:intergenic | 45.0% | |
| ATTCGATCAGAGTGTGGAGA+TGG | - | chr4_2:47658855-47658874 | None:intergenic | 45.0% | |
| ATCTCCACACTCTGATCGAA+TGG | + | chr4_2:47658854-47658873 | Msa0603290:CDS | 45.0% | |
| TCATCCATTCGATCAGAGTG+TGG | - | chr4_2:47658861-47658880 | None:intergenic | 45.0% | |
| ! | GTCAAGCCCACTTACCTTTT+AGG | + | chr4_2:47659173-47659192 | Msa0603290:intron | 45.0% |
| ! | ACCTTTTAGGCTTAGAGCTC+GGG | + | chr4_2:47659186-47659205 | Msa0603290:intron | 45.0% |
| GAAGTTACCAATGCGTGTAG+CGG | + | chr4_2:47659271-47659290 | Msa0603290:intron | 45.0% | |
| AACACTCTGCTGTCACAACA+AGG | + | chr4_2:47659696-47659715 | Msa0603290:CDS | 45.0% | |
| CTTCGACAGAATGGACAGAT+GGG | - | chr4_2:47659751-47659770 | None:intergenic | 45.0% | |
| GGTAGAAACTCACGAAGACA+TGG | + | chr4_2:47659798-47659817 | Msa0603290:CDS | 45.0% | |
| CACGAAGACATGGATCTAGA+CGG | + | chr4_2:47659808-47659827 | Msa0603290:CDS | 45.0% | |
| AAGCAATCATCCCGGAACTA+CGG | - | chr4_2:47659951-47659970 | None:intergenic | 45.0% | |
| ! | GGAAAGGCATGGCCTATTAT+TGG | + | chr4_2:47660314-47660333 | Msa0603290:three_prime_UTR | 45.0% |
| AGACTAACTTGGCTGTGGCA+TGG | - | chr4_2:47656549-47656568 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAAGAAGGGA+GGG | - | chr4_2:47656628-47656647 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAAGAAGGG+AGG | - | chr4_2:47656629-47656648 | None:intergenic | 50.0% | |
| TGGAGAAGGATGGGTCAAAG+TGG | + | chr4_2:47656729-47656748 | Msa0603290:exon | 50.0% | |
| GGCAGCAGCAATATGAAGAG+GGG | - | chr4_2:47656886-47656905 | None:intergenic | 50.0% | |
| CCGAATTATCAGATGGACGG+AGG | - | chr4_2:47656963-47656982 | None:intergenic | 50.0% | |
| ACTAACCAAGAAGCAGCCAC+GGG | - | chr4_2:47657610-47657629 | None:intergenic | 50.0% | |
| GACTAACCAAGAAGCAGCCA+CGG | - | chr4_2:47657611-47657630 | None:intergenic | 50.0% | |
| ! | AGGTGCTACACCATTGCATC+TGG | + | chr4_2:47657772-47657791 | Msa0603290:CDS | 50.0% |
| ATCTGGCAGCTCGTCAAAGA+CGG | + | chr4_2:47657789-47657808 | Msa0603290:CDS | 50.0% | |
| GTCTCCAACGTGATGCATCT+GGG | + | chr4_2:47658066-47658085 | Msa0603290:CDS | 50.0% | |
| TGTACCCAGATGCATCACGT+TGG | - | chr4_2:47658073-47658092 | None:intergenic | 50.0% | |
| !!! | CAGCGTGCTTTTTCCTCCAT+AGG | - | chr4_2:47658167-47658186 | None:intergenic | 50.0% |
| ATGCAGGCGGATACCATATG+TGG | + | chr4_2:47658635-47658654 | Msa0603290:intron | 50.0% | |
| CATCTGCACAGCCTCTTGTA+TGG | + | chr4_2:47658706-47658725 | Msa0603290:CDS | 50.0% | |
| TTCCCTGTTCGCGTCCAATA+AGG | - | chr4_2:47658793-47658812 | None:intergenic | 50.0% | |
| TATTGGACGCGAACAGGGAA+AGG | + | chr4_2:47658793-47658812 | Msa0603290:CDS | 50.0% | |
| ATTGGACGCGAACAGGGAAA+GGG | + | chr4_2:47658794-47658813 | Msa0603290:CDS | 50.0% | |
| GACTAAGTCGTTACCTGGCT+GGG | - | chr4_2:47659156-47659175 | None:intergenic | 50.0% | |
| TGACTAAGTCGTTACCTGGC+TGG | - | chr4_2:47659157-47659176 | None:intergenic | 50.0% | |
| GGCTTGACTAAGTCGTTACC+TGG | - | chr4_2:47659161-47659180 | None:intergenic | 50.0% | |
| ! | CCTTTTAGGCTTAGAGCTCG+GGG | + | chr4_2:47659187-47659206 | Msa0603290:intron | 50.0% |
| ! | TCTAAGGTAGCTCGTTGGGA+TGG | - | chr4_2:47659220-47659239 | None:intergenic | 50.0% |
| ! | ATGCTGCATCTGCTTTGAGC+AGG | + | chr4_2:47659618-47659637 | Msa0603290:CDS | 50.0% |
| TGCATTGTGCACACATCTGG+TGG | - | chr4_2:47659672-47659691 | None:intergenic | 50.0% | |
| GTGTGCATTGTGCACACATC+TGG | - | chr4_2:47659675-47659694 | None:intergenic | 50.0% | |
| GGGATGCGAAGTTGAAGTGT+TGG | - | chr4_2:47659722-47659741 | None:intergenic | 50.0% | |
| ACAGAATGGACAGATGGGTG+GGG | - | chr4_2:47659746-47659765 | None:intergenic | 50.0% | |
| GACAGAATGGACAGATGGGT+GGG | - | chr4_2:47659747-47659766 | None:intergenic | 50.0% | |
| GCTTCGACAGAATGGACAGA+TGG | - | chr4_2:47659752-47659771 | None:intergenic | 50.0% | |
| GATATGGCGCTTCGACAGAA+TGG | - | chr4_2:47659760-47659779 | None:intergenic | 50.0% | |
| GGTAGCAGCAGCAGTTTCAA+GGG | + | chr4_2:47659889-47659908 | Msa0603290:CDS | 50.0% | |
| AAAATGAGCGGCCGTAGTTC+CGG | + | chr4_2:47659937-47659956 | Msa0603290:CDS | 50.0% | |
| !! | AACAGGTGTCGACGTCATTG+TGG | - | chr4_2:47660000-47660019 | None:intergenic | 50.0% |
| AGGGAGGGACAGTGTCACAT+AGG | - | chr4_2:47656609-47656628 | None:intergenic | 55.0% | |
| GAGAGAGAAGAAGGGAGGGA+GGG | - | chr4_2:47656624-47656643 | None:intergenic | 55.0% | |
| AGAGAGAGAAGAAGGGAGGG+AGG | - | chr4_2:47656625-47656644 | None:intergenic | 55.0% | |
| TGCTGCCAATGGTCAGATCC+AGG | + | chr4_2:47656899-47656918 | Msa0603290:CDS | 55.0% | |
| TGCTGCTCAATCTAGTCCCG+TGG | + | chr4_2:47657591-47657610 | Msa0603290:CDS | 55.0% | |
| TGACGAGCTGCCAGATGCAA+TGG | - | chr4_2:47657785-47657804 | None:intergenic | 55.0% | |
| CGTCTCCAACGTGATGCATC+TGG | + | chr4_2:47658065-47658084 | Msa0603290:CDS | 55.0% | |
| !! | AGGCCTTATTGGACGCGAAC+AGG | + | chr4_2:47658787-47658806 | Msa0603290:CDS | 55.0% |
| !! | GGCCTTATTGGACGCGAACA+GGG | + | chr4_2:47658788-47658807 | Msa0603290:CDS | 55.0% |
| !! | CCCCGAGCTCTAAGCCTAAA+AGG | - | chr4_2:47659190-47659209 | None:intergenic | 55.0% |
| ACATCTGGTGGCCACAGTCT+TGG | - | chr4_2:47659660-47659679 | None:intergenic | 55.0% | |
| AATGGACAGATGGGTGGGGT+GGG | - | chr4_2:47659742-47659761 | None:intergenic | 55.0% | |
| CGACAGAATGGACAGATGGG+TGG | - | chr4_2:47659748-47659767 | None:intergenic | 55.0% | |
| GGGTAGCAGCAGCAGTTTCA+AGG | + | chr4_2:47659888-47659907 | Msa0603290:CDS | 55.0% | |
| AAATGAGCGGCCGTAGTTCC+GGG | + | chr4_2:47659938-47659957 | Msa0603290:CDS | 55.0% | |
| CTAGTCCCGTGGCTGCTTCT+TGG | + | chr4_2:47657602-47657621 | Msa0603290:CDS | 60.0% | |
| ! | TGATGGGCCGCTACACGCAT+TGG | - | chr4_2:47659281-47659300 | None:intergenic | 60.0% |
| GAATGGACAGATGGGTGGGG+TGG | - | chr4_2:47659743-47659762 | None:intergenic | 60.0% | |
| !! | TTGGCTCTGCTGTCCCAGCC+AGG | + | chr4_2:47659140-47659159 | Msa0603290:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 47656530 | 47660342 | 47656530 | ID=Msa0603290;Name=Msa0603290 |
| chr4_2 | mRNA | 47656530 | 47660342 | 47656530 | ID=Msa0603290-mRNA-1;Parent=Msa0603290;Name=Msa0603290-mRNA-1;_AED=0.05;_eAED=0.05;_QI=184|1|1|1|0.75|0.66|9|337|447 |
| chr4_2 | exon | 47656530 | 47656656 | 47656530 | ID=Msa0603290-mRNA-1:exon:10895;Parent=Msa0603290-mRNA-1 |
| chr4_2 | exon | 47656681 | 47656920 | 47656681 | ID=Msa0603290-mRNA-1:exon:10896;Parent=Msa0603290-mRNA-1 |
| chr4_2 | exon | 47657151 | 47657210 | 47657151 | ID=Msa0603290-mRNA-1:exon:10897;Parent=Msa0603290-mRNA-1 |
| chr4_2 | exon | 47657336 | 47657407 | 47657336 | ID=Msa0603290-mRNA-1:exon:10898;Parent=Msa0603290-mRNA-1 |
| chr4_2 | exon | 47657502 | 47657623 | 47657502 | ID=Msa0603290-mRNA-1:exon:10899;Parent=Msa0603290-mRNA-1 |
| chr4_2 | exon | 47657736 | 47657876 | 47657736 | ID=Msa0603290-mRNA-1:exon:10900;Parent=Msa0603290-mRNA-1 |
| chr4_2 | exon | 47657980 | 47658087 | 47657980 | ID=Msa0603290-mRNA-1:exon:10901;Parent=Msa0603290-mRNA-1 |
| chr4_2 | exon | 47658641 | 47658893 | 47658641 | ID=Msa0603290-mRNA-1:exon:10902;Parent=Msa0603290-mRNA-1 |
| chr4_2 | exon | 47659601 | 47660342 | 47659601 | ID=Msa0603290-mRNA-1:exon:10903;Parent=Msa0603290-mRNA-1 |
| chr4_2 | five_prime_UTR | 47656530 | 47656656 | 47656530 | ID=Msa0603290-mRNA-1:five_prime_utr;Parent=Msa0603290-mRNA-1 |
| chr4_2 | five_prime_UTR | 47656681 | 47656737 | 47656681 | ID=Msa0603290-mRNA-1:five_prime_utr;Parent=Msa0603290-mRNA-1 |
| chr4_2 | CDS | 47656738 | 47656920 | 47656738 | ID=Msa0603290-mRNA-1:cds;Parent=Msa0603290-mRNA-1 |
| chr4_2 | CDS | 47657151 | 47657210 | 47657151 | ID=Msa0603290-mRNA-1:cds;Parent=Msa0603290-mRNA-1 |
| chr4_2 | CDS | 47657336 | 47657407 | 47657336 | ID=Msa0603290-mRNA-1:cds;Parent=Msa0603290-mRNA-1 |
| chr4_2 | CDS | 47657502 | 47657623 | 47657502 | ID=Msa0603290-mRNA-1:cds;Parent=Msa0603290-mRNA-1 |
| chr4_2 | CDS | 47657736 | 47657876 | 47657736 | ID=Msa0603290-mRNA-1:cds;Parent=Msa0603290-mRNA-1 |
| chr4_2 | CDS | 47657980 | 47658087 | 47657980 | ID=Msa0603290-mRNA-1:cds;Parent=Msa0603290-mRNA-1 |
| chr4_2 | CDS | 47658641 | 47658893 | 47658641 | ID=Msa0603290-mRNA-1:cds;Parent=Msa0603290-mRNA-1 |
| chr4_2 | CDS | 47659601 | 47660005 | 47659601 | ID=Msa0603290-mRNA-1:cds;Parent=Msa0603290-mRNA-1 |
| chr4_2 | three_prime_UTR | 47660006 | 47660342 | 47660006 | ID=Msa0603290-mRNA-1:three_prime_utr;Parent=Msa0603290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
