Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684110 | XP_013456116.1 | 97.763 | 447 | 10 | 0 | 1 | 447 | 1 | 447 | 0.0 | 907 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684110 | sp|Q94B55|XB31_ARATH | 67.834 | 457 | 133 | 5 | 1 | 446 | 1 | 454 | 0.0 | 624 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684110 | A0A072UKA7 | 97.763 | 447 | 10 | 0 | 1 | 447 | 1 | 447 | 0.0 | 907 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0603290 | Msa0684110 | 0.884713 | 1.515637e-71 | -8.615850e-47 |
| Msa0644310 | Msa0684110 | 0.874345 | 7.261019e-68 | -8.615850e-47 |
| Msa0684110 | Msa1236150 | 0.813648 | 2.301058e-51 | -8.615850e-47 |
| Msa0548350 | Msa0684110 | 0.861911 | 7.356157e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684110 | MtrunA17_Chr4g0031491 | 97.763 | 447 | 10 | 0 | 1 | 447 | 1 | 447 | 0.0 | 907 |
| Msa0684110 | MtrunA17_Chr2g0328031 | 75.391 | 447 | 104 | 5 | 1 | 445 | 1 | 443 | 0.0 | 696 |
| Msa0684110 | MtrunA17_Chr4g0010051 | 60.586 | 444 | 161 | 6 | 1 | 435 | 1 | 439 | 9.59e-180 | 509 |
| Msa0684110 | MtrunA17_Chr6g0472461 | 33.499 | 403 | 206 | 13 | 1 | 372 | 1 | 372 | 9.84e-46 | 166 |
| Msa0684110 | MtrunA17_Chr4g0073161 | 30.303 | 396 | 221 | 9 | 6 | 376 | 11 | 376 | 1.36e-37 | 143 |
| Msa0684110 | MtrunA17_Chr1g0203651 | 28.859 | 298 | 160 | 11 | 89 | 376 | 1 | 256 | 5.46e-21 | 94.4 |
| Msa0684110 | MtrunA17_Chr1g0212971 | 31.731 | 208 | 121 | 8 | 13 | 216 | 132 | 322 | 2.76e-16 | 81.3 |
| Msa0684110 | MtrunA17_Chr7g0263421 | 30.000 | 210 | 126 | 6 | 11 | 216 | 48 | 240 | 1.21e-15 | 79.0 |
| Msa0684110 | MtrunA17_Chr7g0276681 | 30.603 | 232 | 139 | 6 | 13 | 239 | 82 | 296 | 8.60e-15 | 76.6 |
| Msa0684110 | MtrunA17_Chr1g0211241 | 26.383 | 235 | 153 | 5 | 1 | 232 | 124 | 341 | 2.58e-14 | 75.1 |
| Msa0684110 | MtrunA17_Chr2g0327711 | 28.019 | 207 | 130 | 5 | 13 | 216 | 67 | 257 | 5.59e-14 | 73.9 |
| Msa0684110 | MtrunA17_Chr5g0418551 | 31.818 | 220 | 130 | 4 | 13 | 229 | 20 | 222 | 7.28e-14 | 71.2 |
| Msa0684110 | MtrunA17_Chr2g0293861 | 32.075 | 159 | 92 | 6 | 26 | 179 | 10 | 157 | 3.13e-13 | 68.6 |
| Msa0684110 | MtrunA17_Chr4g0030551 | 23.263 | 331 | 222 | 8 | 13 | 330 | 71 | 382 | 1.67e-12 | 69.3 |
| Msa0684110 | MtrunA17_Chr6g0461061 | 29.000 | 200 | 126 | 4 | 51 | 250 | 181 | 364 | 1.01e-11 | 67.0 |
| Msa0684110 | MtrunA17_Chr5g0439191 | 31.818 | 132 | 81 | 3 | 50 | 179 | 8 | 132 | 1.57e-11 | 63.2 |
| Msa0684110 | MtrunA17_Chr7g0274241 | 27.076 | 277 | 165 | 8 | 51 | 296 | 59 | 329 | 4.48e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684110 | AT2G28840.1 | 67.834 | 457 | 133 | 5 | 1 | 446 | 1 | 454 | 0.0 | 624 |
| Msa0684110 | AT2G28840.2 | 69.948 | 386 | 103 | 4 | 72 | 446 | 57 | 440 | 0.0 | 550 |
| Msa0684110 | AT5G07270.1 | 31.707 | 410 | 229 | 10 | 1 | 388 | 1 | 381 | 3.26e-43 | 159 |
| Msa0684110 | AT5G57740.1 | 29.695 | 394 | 221 | 10 | 6 | 372 | 11 | 375 | 1.19e-31 | 127 |
| Msa0684110 | AT5G02620.4 | 27.381 | 336 | 200 | 12 | 11 | 328 | 55 | 364 | 2.46e-19 | 90.9 |
| Msa0684110 | AT5G02620.1 | 27.381 | 336 | 200 | 12 | 11 | 328 | 55 | 364 | 2.46e-19 | 90.9 |
| Msa0684110 | AT5G02620.3 | 27.381 | 336 | 200 | 12 | 11 | 328 | 55 | 364 | 2.46e-19 | 90.9 |
| Msa0684110 | AT5G60070.1 | 26.786 | 336 | 207 | 12 | 13 | 330 | 74 | 388 | 3.33e-18 | 87.4 |
| Msa0684110 | AT5G60070.1 | 29.187 | 209 | 127 | 4 | 16 | 216 | 36 | 231 | 7.33e-13 | 70.9 |
| Msa0684110 | AT5G02620.5 | 30.583 | 206 | 122 | 5 | 11 | 212 | 55 | 243 | 9.44e-18 | 86.3 |
| Msa0684110 | AT5G02620.2 | 30.583 | 206 | 122 | 5 | 11 | 212 | 55 | 243 | 9.44e-18 | 86.3 |
| Msa0684110 | AT3G12360.1 | 31.674 | 221 | 127 | 10 | 13 | 226 | 130 | 333 | 1.69e-15 | 79.3 |
| Msa0684110 | AT3G12360.2 | 31.674 | 221 | 127 | 10 | 13 | 226 | 118 | 321 | 1.83e-15 | 79.0 |
| Msa0684110 | AT1G07710.2 | 26.409 | 337 | 207 | 12 | 11 | 330 | 65 | 377 | 7.17e-15 | 77.0 |
| Msa0684110 | AT1G07710.1 | 26.409 | 337 | 207 | 12 | 11 | 330 | 65 | 377 | 7.17e-15 | 77.0 |
| Msa0684110 | AT5G20350.1 | 26.613 | 248 | 159 | 6 | 7 | 248 | 22 | 252 | 2.09e-14 | 75.9 |
| Msa0684110 | AT3G04710.1 | 32.093 | 215 | 103 | 6 | 51 | 236 | 59 | 259 | 2.82e-14 | 75.1 |
| Msa0684110 | AT3G04710.3 | 28.625 | 269 | 138 | 8 | 51 | 290 | 283 | 526 | 4.15e-14 | 75.1 |
| Msa0684110 | AT3G04710.2 | 28.625 | 269 | 137 | 7 | 51 | 290 | 59 | 301 | 2.02e-13 | 72.4 |
| Msa0684110 | AT5G13530.2 | 25.592 | 211 | 133 | 5 | 16 | 216 | 472 | 668 | 1.80e-12 | 70.5 |
| Msa0684110 | AT5G13530.1 | 25.592 | 211 | 133 | 5 | 16 | 216 | 472 | 668 | 1.80e-12 | 70.5 |
| Msa0684110 | AT2G31820.1 | 26.749 | 243 | 162 | 6 | 13 | 253 | 190 | 418 | 3.17e-12 | 68.9 |
| Msa0684110 | AT3G24530.1 | 32.895 | 152 | 88 | 4 | 23 | 169 | 26 | 168 | 5.56e-12 | 68.2 |
Find 129 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTAGAGCAGGCCTTAT+TGG | 0.254482 | 4_4:+47361554 | Msa0684110:CDS |
| ATCATCAACCCATTCATTTC+CGG | 0.263302 | 4_4:-47362750 | None:intergenic |
| GGAAAGGCATGGCCTATTAT+TGG | 0.282536 | 4_4:+47363093 | Msa0684110:three_prime_UTR |
| CTAGTCCCGTGGCTGCTTCT+TGG | 0.292776 | 4_4:+47360378 | Msa0684110:CDS |
| AAAATGAGCGGCCGTAGTTC+CGG | 0.300237 | 4_4:+47362716 | Msa0684110:CDS |
| TGTGCTTCAACTAGCAGATA+TGG | 0.305279 | 4_4:+47360630 | Msa0684110:CDS |
| TTCCCTGTTCGCGTCCAATA+AGG | 0.329855 | 4_4:-47361568 | None:intergenic |
| CGTCTCCAACGTGATGCATC+TGG | 0.332475 | 4_4:+47360841 | Msa0684110:CDS |
| TGGTCATTCTTCTTGCCTTA+AGG | 0.368140 | 4_4:+47360334 | Msa0684110:CDS |
| AGGCCTTATTGGACGCGAAC+AGG | 0.370869 | 4_4:+47361565 | Msa0684110:CDS |
| GATAACCATCAGTTTAGATA+TGG | 0.374202 | 4_4:-47362552 | None:intergenic |
| TGTGGAGATGGAAGAGAGTA+AGG | 0.374735 | 4_4:-47361618 | None:intergenic |
| AAATGAGCGGCCGTAGTTCC+GGG | 0.375798 | 4_4:+47362717 | Msa0684110:CDS |
| ATCACATGACAACCAATAAT+AGG | 0.376232 | 4_4:-47363105 | None:intergenic |
| CGAAATTTCCTTGATTTGCT+TGG | 0.378282 | 4_4:-47362632 | None:intergenic |
| TTGCATTATGCTGCTTACTA+TGG | 0.392266 | 4_4:+47360314 | Msa0684110:CDS |
| TACTTCAAAGCAACCACATA+TGG | 0.395193 | 4_4:-47361426 | None:intergenic |
| AGAGAGAAAGAAAGAAAAGA+AGG | 0.410555 | 4_4:-47359401 | None:intergenic |
| AACAGAATGTGCACACATTC+AGG | 0.420204 | 4_4:-47360588 | None:intergenic |
| CATCTGCACAGCCTCTTGTA+TGG | 0.420700 | 4_4:+47361484 | Msa0684110:CDS |
| TTGTCCAATGTAAATTCATT+CGG | 0.426931 | 4_4:+47362692 | Msa0684110:CDS |
| CCTCTTCATTTAGCAGCTAA+AGG | 0.427567 | 4_4:+47360772 | Msa0684110:CDS |
| CTGATTATCTTCAATGATGA+TGG | 0.429013 | 4_4:-47361507 | None:intergenic |
| GGGTAGCAGCAGCAGTTTCA+AGG | 0.445286 | 4_4:+47362667 | Msa0684110:CDS |
| AGGTGCTACACCATTGCATC+TGG | 0.451079 | 4_4:+47360548 | Msa0684110:CDS |
| AGAAAGAAAAGAAGGGAGGG+AGG | 0.454161 | 4_4:-47359393 | None:intergenic |
| ACATCTGGTGGCCACAGTCT+TGG | 0.456216 | 4_4:-47362436 | None:intergenic |
| TCTAATAAAACTTTAGCCTC+TGG | 0.458151 | 4_4:-47361540 | None:intergenic |
| TGCTATATTTGCAGATGTCC+TGG | 0.458321 | 4_4:+47360742 | Msa0684110:intron |
| ATCTAAACTGATGGTTATCA+AGG | 0.465152 | 4_4:+47362556 | Msa0684110:CDS |
| GAAAGAAAAGAAGGGAGGGA+GGG | 0.466139 | 4_4:-47359392 | None:intergenic |
| GAAAGAAAGAAAAGAAGGGA+GGG | 0.469848 | 4_4:-47359396 | None:intergenic |
| GTGTGCATTGTGCACACATC+TGG | 0.471356 | 4_4:-47362451 | None:intergenic |
| GATATGGCGCTTCGACAGAA+TGG | 0.471448 | 4_4:-47362536 | None:intergenic |
| AATGAGCAATAAAATAAGAA+AGG | 0.473754 | 4_4:+47363071 | Msa0684110:three_prime_UTR |
| GTTTCAAGCCAAGCAAATCA+AGG | 0.478084 | 4_4:+47362624 | Msa0684110:CDS |
| GTGCTTCAACTAGCAGATAT+GGG | 0.478560 | 4_4:+47360631 | Msa0684110:CDS |
| AGTTCCGGGATGATTGCTTC+CGG | 0.478906 | 4_4:+47362731 | Msa0684110:CDS |
| GAGAGAAAGAAAGAAAAGAA+GGG | 0.484034 | 4_4:-47359400 | None:intergenic |
| CTTCATATTGCTGCTGCCAA+TGG | 0.485862 | 4_4:+47359637 | Msa0684110:CDS |
| TATTGGACGCGAACAGGGAA+AGG | 0.487813 | 4_4:+47361571 | Msa0684110:CDS |
| TGCTGCCAATGGTCAGATCC+AGG | 0.493489 | 4_4:+47359648 | Msa0684110:CDS |
| TGCATTGCTGCCAACATAAG+TGG | 0.493653 | 4_4:-47360115 | None:intergenic |
| CAGCAGAAAGTATTGCCTTA+AGG | 0.496959 | 4_4:-47360349 | None:intergenic |
| GGTAGCAGCAGCAGTTTCAA+GGG | 0.499150 | 4_4:+47362668 | Msa0684110:CDS |
| TGATTGCTTCCGGAAATGAA+TGG | 0.504157 | 4_4:+47362741 | Msa0684110:CDS |
| GCTATATTTGCAGATGTCCT+GGG | 0.514636 | 4_4:+47360743 | Msa0684110:intron |
| CATCCGCGAATTGTTAGCAT+GGG | 0.514980 | 4_4:+47360810 | Msa0684110:CDS |
| TTGATTTGAAGACGTGGAGA+AGG | 0.515021 | 4_4:+47359464 | Msa0684110:five_prime_UTR |
| CTCTTTCGTGCTGTTCAACA+TGG | 0.515412 | 4_4:+47359532 | Msa0684110:CDS |
| CACCCCATGCTAACAATTCG+CGG | 0.516056 | 4_4:-47360813 | None:intergenic |
| TGTGTTGAATCGACAAAAGC+AGG | 0.516759 | 4_4:+47359953 | Msa0684110:CDS |
| ATCTCCACACTCTGATCGAA+TGG | 0.518796 | 4_4:+47361632 | Msa0684110:CDS |
| ATGCAGGCGGATACCATATG+TGG | 0.519878 | 4_4:+47361413 | Msa0684110:intron |
| ATGAGCAATAAAATAAGAAA+GGG | 0.522122 | 4_4:+47363072 | Msa0684110:three_prime_UTR |
| TTTGAAGACGTGGAGAAGGA+TGG | 0.523370 | 4_4:+47359468 | Msa0684110:exon |
| GTCTCCAACGTGATGCATCT+GGG | 0.525701 | 4_4:+47360842 | Msa0684110:CDS |
| AATGGACAGATGGGTGGGGT+GGG | 0.525799 | 4_4:-47362518 | None:intergenic |
| ATGCTGCATCTGCTTTGAGC+AGG | 0.528277 | 4_4:+47362397 | Msa0684110:CDS |
| GACAGAATGGACAGATGGGT+GGG | 0.529180 | 4_4:-47362523 | None:intergenic |
| AGGGAGGGACAGTGTCACAT+AGG | 0.531010 | 4_4:-47359377 | None:intergenic |
| AGAAAGAAAGAAAAGAAGGG+AGG | 0.533734 | 4_4:-47359397 | None:intergenic |
| ATTCGATCAGAGTGTGGAGA+TGG | 0.534607 | 4_4:-47361630 | None:intergenic |
| GAATGGACAGATGGGTGGGG+TGG | 0.536558 | 4_4:-47362519 | None:intergenic |
| AAGCAATCATCCCGGAACTA+CGG | 0.537754 | 4_4:-47362727 | None:intergenic |
| AGCAGTTATTCAGACAAACT+TGG | 0.540639 | 4_4:-47359328 | None:intergenic |
| GTAGTACGATTGAGAAGAGA+AGG | 0.541763 | 4_4:-47359592 | None:intergenic |
| GATTGCTTCCGGAAATGAAT+GGG | 0.542972 | 4_4:+47362742 | Msa0684110:CDS |
| AATTCAGACCCCACTTATGT+TGG | 0.543384 | 4_4:+47360105 | Msa0684110:intron |
| CTTATGTTGGCAGCAATGCA+TGG | 0.544992 | 4_4:+47360118 | Msa0684110:CDS |
| CAAAGTGGTCTTAGTTGTAG+AGG | 0.545298 | 4_4:+47359493 | Msa0684110:CDS |
| CCTTTAGCTGCTAAATGAAG+AGG | 0.547668 | 4_4:-47360772 | None:intergenic |
| GACTAACCAAGAAGCAGCCA+CGG | 0.550497 | 4_4:-47360384 | None:intergenic |
| GCATTGCTGCCAACATAAGT+GGG | 0.556318 | 4_4:-47360114 | None:intergenic |
| TTGAAGACGTGGAGAAGGAT+GGG | 0.564566 | 4_4:+47359469 | Msa0684110:exon |
| GGCCTTATTGGACGCGAACA+GGG | 0.567914 | 4_4:+47361566 | Msa0684110:CDS |
| GTGAATATTAGAGACGGTAG+AGG | 0.570533 | 4_4:+47360528 | Msa0684110:CDS |
| GTGGAAAAGTTGCTTGAAGC+TGG | 0.573507 | 4_4:+47360154 | Msa0684110:CDS |
| CAATAAAATAAGAAAGGGAA+AGG | 0.577041 | 4_4:+47363077 | Msa0684110:three_prime_UTR |
| ATTGGACGCGAACAGGGAAA+GGG | 0.577168 | 4_4:+47361572 | Msa0684110:CDS |
| TTAATGTTTGATGTGTGTCA+TGG | 0.578777 | 4_4:+47360281 | Msa0684110:CDS |
| GCTTCGACAGAATGGACAGA+TGG | 0.579479 | 4_4:-47362528 | None:intergenic |
| ACAGAATGGACAGATGGGTG+GGG | 0.584465 | 4_4:-47362522 | None:intergenic |
| TATTCAGACAAACTTGGCTG+TGG | 0.584852 | 4_4:-47359322 | None:intergenic |
| TTGAACCTGGATCTGACCAT+TGG | 0.585236 | 4_4:-47359653 | None:intergenic |
| GGTAGAAACTCACGAAGACA+TGG | 0.587372 | 4_4:+47362577 | Msa0684110:CDS |
| TGGCAGCAGCAATATGAAGA+GGG | 0.588977 | 4_4:-47359633 | None:intergenic |
| GCATCCGCGAATTGTTAGCA+TGG | 0.589664 | 4_4:+47360809 | Msa0684110:CDS |
| CGACAGAATGGACAGATGGG+TGG | 0.592181 | 4_4:-47362524 | None:intergenic |
| CAACTCAATGATAATAAATG+TGG | 0.592331 | 4_4:+47359436 | Msa0684110:five_prime_UTR |
| AGACAAACTTGGCTGTGGCA+TGG | 0.594520 | 4_4:-47359317 | None:intergenic |
| ATCTGGCAGCTCGTCAAAGA+CGG | 0.594811 | 4_4:+47360565 | Msa0684110:CDS |
| CGAATTGTTAGCATGGGGTG+CGG | 0.595407 | 4_4:+47360816 | Msa0684110:CDS |
| AAGCGCCATATCTAAACTGA+TGG | 0.601000 | 4_4:+47362547 | Msa0684110:CDS |
| TGACGAGCTGCCAGATGCAA+TGG | 0.602034 | 4_4:-47360558 | None:intergenic |
| GTGCACATTCTGTTGTGTAG+TGG | 0.607255 | 4_4:+47360597 | Msa0684110:CDS |
| AATGATGATGGCCATACAAG+AGG | 0.608678 | 4_4:-47361495 | None:intergenic |
| TGCTGCTCAATCTAGTCCCG+TGG | 0.608978 | 4_4:+47360367 | Msa0684110:CDS |
| GCAACTATGCTTGATAAGCA+AGG | 0.609839 | 4_4:+47362835 | Msa0684110:three_prime_UTR |
| GCATGGAAAGATTGAATGTG+TGG | 0.610223 | 4_4:+47360135 | Msa0684110:CDS |
| GGGATGCGAAGTTGAAGTGT+TGG | 0.613230 | 4_4:-47362498 | None:intergenic |
| CTTCATTTAGCAGCTAAAGG+AGG | 0.613756 | 4_4:+47360775 | Msa0684110:CDS |
| AAATGAAGAGGAGTACTCCC+AGG | 0.616255 | 4_4:-47360760 | None:intergenic |
| CTTCGACAGAATGGACAGAT+GGG | 0.616676 | 4_4:-47362527 | None:intergenic |
| TTGGCAGCAGCAATATGAAG+AGG | 0.619663 | 4_4:-47359634 | None:intergenic |
| ACTAACCAAGAAGCAGCCAC+GGG | 0.627620 | 4_4:-47360383 | None:intergenic |
| AACACTCTGCTGTCACAACA+AGG | 0.631175 | 4_4:+47362475 | Msa0684110:CDS |
| ATTTCCGGAAGCAATCATCC+CGG | 0.634599 | 4_4:-47362735 | None:intergenic |
| AAATAAGAAAGGGAAAGGCA+TGG | 0.635946 | 4_4:+47363082 | Msa0684110:three_prime_UTR |
| TGTAGAGGTAGTCATGAACA+TGG | 0.643863 | 4_4:+47359508 | Msa0684110:CDS |
| CGGTTTGTGAATATTAGAGA+CGG | 0.645981 | 4_4:+47360522 | Msa0684110:CDS |
| TCATCCATTCGATCAGAGTG+TGG | 0.646169 | 4_4:-47361636 | None:intergenic |
| TGCATTGTGCACACATCTGG+TGG | 0.649232 | 4_4:-47362448 | None:intergenic |
| AACAGGTGTCGACATCATTG+TGG | 0.652268 | 4_4:-47362776 | None:intergenic |
| TAGTACGATTGAGAAGAGAA+GGG | 0.656985 | 4_4:-47359591 | None:intergenic |
| TGGAGAAGGATGGGTCAAAG+TGG | 0.658025 | 4_4:+47359478 | Msa0684110:exon |
| AATCAGTGAACTTAATCCAG+AGG | 0.659408 | 4_4:+47361524 | Msa0684110:CDS |
| ATCCGCGAATTGTTAGCATG+GGG | 0.662876 | 4_4:+47360811 | Msa0684110:CDS |
| GGCAGCAGCAATATGAAGAG+GGG | 0.664522 | 4_4:-47359632 | None:intergenic |
| CACGAAGACATGGATCTAGA+CGG | 0.665659 | 4_4:+47362587 | Msa0684110:CDS |
| TTTGCTTGGCTTGAAACAAG+TGG | 0.668168 | 4_4:-47362618 | None:intergenic |
| TGTACCCAGATGCATCACGT+TGG | 0.686205 | 4_4:-47360846 | None:intergenic |
| GTTGCTTTGAAGTACAAACA+TGG | 0.699828 | 4_4:+47361435 | Msa0684110:CDS |
| AAATTTCGTAACATGAACGA+GGG | 0.699839 | 4_4:+47362647 | Msa0684110:CDS |
| GAAATTTCGTAACATGAACG+AGG | 0.700659 | 4_4:+47362646 | Msa0684110:CDS |
| CATTGCTGCCAACATAAGTG+GGG | 0.709787 | 4_4:-47360113 | None:intergenic |
| AATGGATGACAATATCTCTG+AGG | 0.711499 | 4_4:+47361650 | Msa0684110:CDS |
| ACAATTGAAGTCCAAGACTG+TGG | 0.711764 | 4_4:+47362425 | Msa0684110:CDS |
| GAAACTTTGATTTGAAGACG+TGG | 0.719236 | 4_4:+47359458 | Msa0684110:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCTTTAATTGTATTTTTT+TGG | + | chr4_4:47360079-47360098 | Msa0684110:intron | 10.0% |
| !! | AATAATTATGAAAAATTATC+AGG | + | chr4_4:47360256-47360275 | Msa0684110:intron | 10.0% |
| !!! | GATTATATTTTTCAAATTAT+AGG | - | chr4_4:47361207-47361226 | None:intergenic | 10.0% |
| !! | TATAAATTTAATAAGTTTGT+AGG | - | chr4_4:47361765-47361784 | None:intergenic | 10.0% |
| !!! | TTTGAATTTTGATTTGAATT+TGG | + | chr4_4:47359992-47360011 | Msa0684110:intron | 15.0% |
| !! | TCATAAAATTGAAATAAACA+TGG | - | chr4_4:47360204-47360223 | None:intergenic | 15.0% |
| !!! | GATTTTAAAACATTTAACAA+TGG | + | chr4_4:47360467-47360486 | Msa0684110:intron | 15.0% |
| !! | AAATATGTAAACCTATTATT+TGG | + | chr4_4:47361138-47361157 | Msa0684110:intron | 15.0% |
| !!! | AAAAATATAATCACTTGTTT+TGG | + | chr4_4:47361215-47361234 | Msa0684110:intron | 15.0% |
| !! | AAACTTATTAAATTTATAGC+AGG | + | chr4_4:47361767-47361786 | Msa0684110:intron | 15.0% |
| !!! | CTAATTATTTGGATATTTTT+CGG | + | chr4_4:47361794-47361813 | Msa0684110:intron | 15.0% |
| !!! | AAGAATTTTCTCAAATTTAA+TGG | - | chr4_4:47362972-47362991 | None:intergenic | 15.0% |
| !! | TTAAAATGAAAAACCCAATT+GGG | - | chr4_4:47359821-47359840 | None:intergenic | 20.0% |
| !! | ATTAAAATGAAAAACCCAAT+TGG | - | chr4_4:47359822-47359841 | None:intergenic | 20.0% |
| !!! | GGTTTTTCATTTTAATTTCT+GGG | + | chr4_4:47359826-47359845 | Msa0684110:intron | 20.0% |
| !!! | GATTTGAATTTGGATTTTAA+TGG | + | chr4_4:47360002-47360021 | Msa0684110:intron | 20.0% |
| !! | AAAATTGAAATAAACATGGA+GGG | - | chr4_4:47360200-47360219 | None:intergenic | 20.0% |
| !! | TAAAATTGAAATAAACATGG+AGG | - | chr4_4:47360201-47360220 | None:intergenic | 20.0% |
| !! | TCATTAATTTCTTTCCTAAT+TGG | + | chr4_4:47360420-47360439 | Msa0684110:intron | 20.0% |
| !! | AAGAATACAATTATATTGCA+GGG | + | chr4_4:47360491-47360510 | Msa0684110:intron | 20.0% |
| !!! | TGATTGCTATTTTTCAATTT+AGG | + | chr4_4:47361260-47361279 | Msa0684110:intron | 20.0% |
| !! | TTTAACTGATCAAAATTAGA+AGG | - | chr4_4:47361861-47361880 | None:intergenic | 20.0% |
| !! | GGTAAAATGAAAGTAAAAAA+AGG | + | chr4_4:47362856-47362875 | Msa0684110:three_prime_UTR | 20.0% |
| !!! | TTCTTTTTTCTCATTAGTTA+AGG | + | chr4_4:47362987-47363006 | Msa0684110:three_prime_UTR | 20.0% |
| !!! | TACACAATACATTTTCTTTA+TGG | - | chr4_4:47363022-47363041 | None:intergenic | 20.0% |
| !! | AATGAGCAATAAAATAAGAA+AGG | + | chr4_4:47363071-47363090 | Msa0684110:three_prime_UTR | 20.0% |
| !! | ATGAGCAATAAAATAAGAAA+GGG | + | chr4_4:47363072-47363091 | Msa0684110:three_prime_UTR | 20.0% |
| ! | CAACTCAATGATAATAAATG+TGG | + | chr4_4:47359436-47359455 | Msa0684110:five_prime_UTR | 25.0% |
| ! | ACACGAAAAAAGAATGTAAA+GGG | - | chr4_4:47359685-47359704 | None:intergenic | 25.0% |
| ! | AACACGAAAAAAGAATGTAA+AGG | - | chr4_4:47359686-47359705 | None:intergenic | 25.0% |
| ! | TTATTATGAAACGTCTTAGA+TGG | + | chr4_4:47359768-47359787 | Msa0684110:intron | 25.0% |
| ! | TAAAATGAAAAACCCAATTG+GGG | - | chr4_4:47359820-47359839 | None:intergenic | 25.0% |
| !!! | GGGTTTTTCATTTTAATTTC+TGG | + | chr4_4:47359825-47359844 | Msa0684110:intron | 25.0% |
| !!! | TTTTTTTTTTGGGAATTTGC+AGG | + | chr4_4:47359893-47359912 | Msa0684110:intron | 25.0% |
| !! | GTTTTATCTAAGCTTTTAGA+TGG | + | chr4_4:47359915-47359934 | Msa0684110:CDS | 25.0% |
| ! | AATTAATGACAAAACCGAAA+AGG | - | chr4_4:47360409-47360428 | None:intergenic | 25.0% |
| ! | CAAGAATACAATTATATTGC+AGG | + | chr4_4:47360490-47360509 | Msa0684110:intron | 25.0% |
| ! | AGAATACAATTATATTGCAG+GGG | + | chr4_4:47360492-47360511 | Msa0684110:intron | 25.0% |
| !!! | TGTTGAATCATTTTGTTTTG+TGG | + | chr4_4:47360709-47360728 | Msa0684110:intron | 25.0% |
| ! | TTGTATGATCTATCAATTGT+GGG | - | chr4_4:47361120-47361139 | None:intergenic | 25.0% |
| ! | TTTGTATGATCTATCAATTG+TGG | - | chr4_4:47361121-47361140 | None:intergenic | 25.0% |
| ! | TACAACTAATGCCAAATAAT+AGG | - | chr4_4:47361152-47361171 | None:intergenic | 25.0% |
| ! | AGTTGTAGTAGTAAAATGTA+AGG | + | chr4_4:47361165-47361184 | Msa0684110:intron | 25.0% |
| !!! | ATATAATCACTTGTTTTGGT+AGG | + | chr4_4:47361219-47361238 | Msa0684110:intron | 25.0% |
| ! | GAATCATAACAATGTTTCTT+GGG | - | chr4_4:47361297-47361316 | None:intergenic | 25.0% |
| ! | TGAATCATAACAATGTTTCT+TGG | - | chr4_4:47361298-47361317 | None:intergenic | 25.0% |
| ! | ACTTGAAAGTTGAATAAAAC+AGG | - | chr4_4:47361353-47361372 | None:intergenic | 25.0% |
| ! | AAGTAGTAAATTCAAATGGT+TGG | - | chr4_4:47361701-47361720 | None:intergenic | 25.0% |
| ! | AGCAAAGTAGTAAATTCAAA+TGG | - | chr4_4:47361705-47361724 | None:intergenic | 25.0% |
| ! | GAATTTACTACTTTGCTTAT+AGG | + | chr4_4:47361708-47361727 | Msa0684110:intron | 25.0% |
| !! | AAGAGATGATAGTTTTCTAA+AGG | - | chr4_4:47362014-47362033 | None:intergenic | 25.0% |
| !!! | TCCATTATACATTCACTTTT+GGG | + | chr4_4:47362208-47362227 | Msa0684110:intron | 25.0% |
| ! | TTGTCCAATGTAAATTCATT+CGG | + | chr4_4:47362692-47362711 | Msa0684110:CDS | 25.0% |
| !! | TTTTCCGAATGAATTTACAT+TGG | - | chr4_4:47362699-47362718 | None:intergenic | 25.0% |
| ! | CAATAAAATAAGAAAGGGAA+AGG | + | chr4_4:47363077-47363096 | Msa0684110:three_prime_UTR | 25.0% |
| GAGAGAAAGAAAGAAAAGAA+GGG | - | chr4_4:47359403-47359422 | None:intergenic | 30.0% | |
| AGAGAGAAAGAAAGAAAAGA+AGG | - | chr4_4:47359404-47359423 | None:intergenic | 30.0% | |
| ! | AAAGAGTAGAAACAGTTTTC+AGG | - | chr4_4:47359561-47359580 | None:intergenic | 30.0% |
| TTAATGTTTGATGTGTGTCA+TGG | + | chr4_4:47360281-47360300 | Msa0684110:CDS | 30.0% | |
| ! | CTTTCCTAATTGGTTCATAT+CGG | + | chr4_4:47360430-47360449 | Msa0684110:intron | 30.0% |
| GAATACAATTATATTGCAGG+GGG | + | chr4_4:47360493-47360512 | Msa0684110:intron | 30.0% | |
| ACTGTATCATCTCAAGTTAA+CGG | - | chr4_4:47360989-47361008 | None:intergenic | 30.0% | |
| AAAATGTAAGGAAGTCTCTA+AGG | + | chr4_4:47361177-47361196 | Msa0684110:intron | 30.0% | |
| TAACAATGTTTCTTGGGATA+AGG | - | chr4_4:47361291-47361310 | None:intergenic | 30.0% | |
| ATAAAACACACACAGTTTGA+AGG | - | chr4_4:47361395-47361414 | None:intergenic | 30.0% | |
| CTGATTATCTTCAATGATGA+TGG | - | chr4_4:47361510-47361529 | None:intergenic | 30.0% | |
| TCTAATAAAACTTTAGCCTC+TGG | - | chr4_4:47361543-47361562 | None:intergenic | 30.0% | |
| AGGGAGAAAAACATATTGAA+AGG | + | chr4_4:47361591-47361610 | Msa0684110:CDS | 30.0% | |
| !! | ATGGTTGGTAAGAAATCAAA+GGG | - | chr4_4:47361686-47361705 | None:intergenic | 30.0% |
| !! | AATGGTTGGTAAGAAATCAA+AGG | - | chr4_4:47361687-47361706 | None:intergenic | 30.0% |
| TAGCAGGAAGTCTAATTATT+TGG | + | chr4_4:47361783-47361802 | Msa0684110:intron | 30.0% | |
| ! | GTCCATTATACATTCACTTT+TGG | + | chr4_4:47362207-47362226 | Msa0684110:intron | 30.0% |
| !! | CCATTATACATTCACTTTTG+GGG | + | chr4_4:47362209-47362228 | Msa0684110:intron | 30.0% |
| TACAGCAATGCAAATGTAAA+GGG | - | chr4_4:47362276-47362295 | None:intergenic | 30.0% | |
| TTACAGCAATGCAAATGTAA+AGG | - | chr4_4:47362277-47362296 | None:intergenic | 30.0% | |
| !! | TGAAGATTTTTATTTCTCGC+TGG | - | chr4_4:47362304-47362323 | None:intergenic | 30.0% |
| ! | CGAGATCTAATGTAATTTTC+AGG | + | chr4_4:47362358-47362377 | Msa0684110:intron | 30.0% |
| GATAACCATCAGTTTAGATA+TGG | - | chr4_4:47362555-47362574 | None:intergenic | 30.0% | |
| ATCTAAACTGATGGTTATCA+AGG | + | chr4_4:47362556-47362575 | Msa0684110:CDS | 30.0% | |
| AAATTTCGTAACATGAACGA+GGG | + | chr4_4:47362647-47362666 | Msa0684110:CDS | 30.0% | |
| AATTCATTCGGAAAAATGAG+CGG | + | chr4_4:47362704-47362723 | Msa0684110:CDS | 30.0% | |
| AGCAGTTATTCAGACAAACT+TGG | - | chr4_4:47359331-47359350 | None:intergenic | 35.0% | |
| GAAAGAAAGAAAAGAAGGGA+GGG | - | chr4_4:47359399-47359418 | None:intergenic | 35.0% | |
| AGAAAGAAAGAAAAGAAGGG+AGG | - | chr4_4:47359400-47359419 | None:intergenic | 35.0% | |
| !! | GAAACTTTGATTTGAAGACG+TGG | + | chr4_4:47359458-47359477 | Msa0684110:five_prime_UTR | 35.0% |
| TAGTACGATTGAGAAGAGAA+GGG | - | chr4_4:47359594-47359613 | None:intergenic | 35.0% | |
| TAAAGGGAAAAGATTGAACC+TGG | - | chr4_4:47359669-47359688 | None:intergenic | 35.0% | |
| TCTCCGTTCATCTGATAATT+CGG | + | chr4_4:47359709-47359728 | Msa0684110:intron | 35.0% | |
| ACTCCGAATTATCAGATGAA+CGG | - | chr4_4:47359715-47359734 | None:intergenic | 35.0% | |
| !!! | TTTTGTCGATTCAACACATC+TGG | - | chr4_4:47359951-47359970 | None:intergenic | 35.0% |
| TGGAAAGAATTGAATGTGTG+TGG | + | chr4_4:47360022-47360041 | Msa0684110:intron | 35.0% | |
| ! | TTGCATTATGCTGCTTACTA+TGG | + | chr4_4:47360314-47360333 | Msa0684110:CDS | 35.0% |
| ATCACCGATATGAACCAATT+AGG | - | chr4_4:47360437-47360456 | None:intergenic | 35.0% | |
| CGGTTTGTGAATATTAGAGA+CGG | + | chr4_4:47360522-47360541 | Msa0684110:CDS | 35.0% | |
| ATTGGTGAGATCTTATCAAG+TGG | - | chr4_4:47360898-47360917 | None:intergenic | 35.0% | |
| ATCTCACCAATGATGATCAA+TGG | + | chr4_4:47360907-47360926 | Msa0684110:intron | 35.0% | |
| CCAAATCCATTGATCATCAT+TGG | - | chr4_4:47360916-47360935 | None:intergenic | 35.0% | |
| ! | CCAATGATGATCAATGGATT+TGG | + | chr4_4:47360913-47360932 | Msa0684110:intron | 35.0% |
| ! | CAATGGATTTGGATTTCCTA+TGG | + | chr4_4:47360924-47360943 | Msa0684110:intron | 35.0% |
| AACTTGAGATTGAACTGTTG+AGG | + | chr4_4:47361055-47361074 | Msa0684110:intron | 35.0% | |
| GATCTATCAATTGTGGGATT+TGG | - | chr4_4:47361114-47361133 | None:intergenic | 35.0% | |
| ! | AATCAAGAGCACAATAGGAA+AGG | - | chr4_4:47361245-47361264 | None:intergenic | 35.0% |
| ! | ATAGCAATCAAGAGCACAAT+AGG | - | chr4_4:47361250-47361269 | None:intergenic | 35.0% |
| ! | AAACTGTGTGTGTTTTATGC+AGG | + | chr4_4:47361397-47361416 | Msa0684110:intron | 35.0% |
| TACTTCAAAGCAACCACATA+TGG | - | chr4_4:47361429-47361448 | None:intergenic | 35.0% | |
| !! | GTTGCTTTGAAGTACAAACA+TGG | + | chr4_4:47361435-47361454 | Msa0684110:CDS | 35.0% |
| AATCAGTGAACTTAATCCAG+AGG | + | chr4_4:47361524-47361543 | Msa0684110:CDS | 35.0% | |
| !!! | GGCTAAAGTTTTATTAGAGC+AGG | + | chr4_4:47361545-47361564 | Msa0684110:CDS | 35.0% |
| ! | TTTATTAGAGCAGGCCTTAT+TGG | + | chr4_4:47361554-47361573 | Msa0684110:CDS | 35.0% |
| AATGGATGACAATATCTCTG+AGG | + | chr4_4:47361650-47361669 | Msa0684110:CDS | 35.0% | |
| !! | GACAATATCTCTGAGGTAAT+TGG | + | chr4_4:47361657-47361676 | Msa0684110:intron | 35.0% |
| GGTGCAGTTGAATTGAATTA+TGG | + | chr4_4:47361729-47361748 | Msa0684110:intron | 35.0% | |
| GAGTTTATGCATAATTCGAC+AGG | - | chr4_4:47361884-47361903 | None:intergenic | 35.0% | |
| AACTCTGAGCTATTTGTCTT+TGG | + | chr4_4:47361899-47361918 | Msa0684110:intron | 35.0% | |
| TCTAAGCCTAAAAGGTAAGT+GGG | - | chr4_4:47361960-47361979 | None:intergenic | 35.0% | |
| !! | TTTTCTAAAGGTAGCTCGTT+GGG | - | chr4_4:47362002-47362021 | None:intergenic | 35.0% |
| ATCATCTCTTTACCATCTGT+AGG | + | chr4_4:47362024-47362043 | Msa0684110:intron | 35.0% | |
| CCCCAAAAGTGAATGTATAA+TGG | - | chr4_4:47362212-47362231 | None:intergenic | 35.0% | |
| ACATAGATTACAAGTCAGAG+AGG | - | chr4_4:47362250-47362269 | None:intergenic | 35.0% | |
| CTCGCAATAAGTATATAGTG+TGG | - | chr4_4:47362342-47362361 | None:intergenic | 35.0% | |
| !!! | TAATTTTCAGGTTAGCGAGA+CGG | + | chr4_4:47362370-47362389 | Msa0684110:intron | 35.0% |
| !! | CGAAATTTCCTTGATTTGCT+TGG | - | chr4_4:47362635-47362654 | None:intergenic | 35.0% |
| GAAATTTCGTAACATGAACG+AGG | + | chr4_4:47362646-47362665 | Msa0684110:CDS | 35.0% | |
| ATCATCAACCCATTCATTTC+CGG | - | chr4_4:47362753-47362772 | None:intergenic | 35.0% | |
| AAATAAGAAAGGGAAAGGCA+TGG | + | chr4_4:47363082-47363101 | Msa0684110:three_prime_UTR | 35.0% | |
| TATTCAGACAAACTTGGCTG+TGG | - | chr4_4:47359325-47359344 | None:intergenic | 40.0% | |
| ! | TTGATTTGAAGACGTGGAGA+AGG | + | chr4_4:47359464-47359483 | Msa0684110:five_prime_UTR | 40.0% |
| ! | CAAAGTGGTCTTAGTTGTAG+AGG | + | chr4_4:47359493-47359512 | Msa0684110:CDS | 40.0% |
| TGTAGAGGTAGTCATGAACA+TGG | + | chr4_4:47359508-47359527 | Msa0684110:CDS | 40.0% | |
| GTAGTACGATTGAGAAGAGA+AGG | - | chr4_4:47359595-47359614 | None:intergenic | 40.0% | |
| AAAACCCAATTGGGGAACTT+GGG | - | chr4_4:47359812-47359831 | None:intergenic | 40.0% | |
| AAAAACCCAATTGGGGAACT+TGG | - | chr4_4:47359813-47359832 | None:intergenic | 40.0% | |
| TGTGTTGAATCGACAAAAGC+AGG | + | chr4_4:47359953-47359972 | Msa0684110:CDS | 40.0% | |
| AATTCAGACCCCACTTATGT+TGG | + | chr4_4:47360105-47360124 | Msa0684110:intron | 40.0% | |
| GCATGGAAAGATTGAATGTG+TGG | + | chr4_4:47360135-47360154 | Msa0684110:CDS | 40.0% | |
| TGGTCATTCTTCTTGCCTTA+AGG | + | chr4_4:47360334-47360353 | Msa0684110:CDS | 40.0% | |
| !! | CAGCAGAAAGTATTGCCTTA+AGG | - | chr4_4:47360352-47360371 | None:intergenic | 40.0% |
| !! | GCTTCTTGGTTAGTCCTTTT+CGG | + | chr4_4:47360392-47360411 | Msa0684110:intron | 40.0% |
| GTGAATATTAGAGACGGTAG+AGG | + | chr4_4:47360528-47360547 | Msa0684110:CDS | 40.0% | |
| AACAGAATGTGCACACATTC+AGG | - | chr4_4:47360591-47360610 | None:intergenic | 40.0% | |
| TGTGCTTCAACTAGCAGATA+TGG | + | chr4_4:47360630-47360649 | Msa0684110:CDS | 40.0% | |
| GTGCTTCAACTAGCAGATAT+GGG | + | chr4_4:47360631-47360650 | Msa0684110:CDS | 40.0% | |
| AACGATGAGTCTGATAAGCT+TGG | + | chr4_4:47360674-47360693 | Msa0684110:intron | 40.0% | |
| TGCTATATTTGCAGATGTCC+TGG | + | chr4_4:47360742-47360761 | Msa0684110:intron | 40.0% | |
| GCTATATTTGCAGATGTCCT+GGG | + | chr4_4:47360743-47360762 | Msa0684110:intron | 40.0% | |
| CCTTTAGCTGCTAAATGAAG+AGG | - | chr4_4:47360775-47360794 | None:intergenic | 40.0% | |
| CCTCTTCATTTAGCAGCTAA+AGG | + | chr4_4:47360772-47360791 | Msa0684110:CDS | 40.0% | |
| CTTCATTTAGCAGCTAAAGG+AGG | + | chr4_4:47360775-47360794 | Msa0684110:CDS | 40.0% | |
| TGGATTTGGATTTCCTATGG+AGG | + | chr4_4:47360927-47360946 | Msa0684110:intron | 40.0% | |
| !! | AATGATGATGGCCATACAAG+AGG | - | chr4_4:47361498-47361517 | None:intergenic | 40.0% |
| CTCTAAGCCTAAAAGGTAAG+TGG | - | chr4_4:47361961-47361980 | None:intergenic | 40.0% | |
| ! | TACCTTTTAGGCTTAGAGCT+CGG | + | chr4_4:47361963-47361982 | Msa0684110:intron | 40.0% |
| !! | GTTTTCTAAAGGTAGCTCGT+TGG | - | chr4_4:47362003-47362022 | None:intergenic | 40.0% |
| GGTAACTTCTAACCTACAGA+TGG | - | chr4_4:47362039-47362058 | None:intergenic | 40.0% | |
| ! | CATGATGATGATCGCTTGAT+GGG | - | chr4_4:47362076-47362095 | None:intergenic | 40.0% |
| ! | ACATGATGATGATCGCTTGA+TGG | - | chr4_4:47362077-47362096 | None:intergenic | 40.0% |
| CGATCATCATCATGTCAAAC+AGG | + | chr4_4:47362082-47362101 | Msa0684110:intron | 40.0% | |
| TAGATTACAAGTCAGAGAGG+CGG | - | chr4_4:47362247-47362266 | None:intergenic | 40.0% | |
| ACAATTGAAGTCCAAGACTG+TGG | + | chr4_4:47362425-47362444 | Msa0684110:CDS | 40.0% | |
| AAGCGCCATATCTAAACTGA+TGG | + | chr4_4:47362547-47362566 | Msa0684110:CDS | 40.0% | |
| ! | TTTGCTTGGCTTGAAACAAG+TGG | - | chr4_4:47362621-47362640 | None:intergenic | 40.0% |
| GTTTCAAGCCAAGCAAATCA+AGG | + | chr4_4:47362624-47362643 | Msa0684110:CDS | 40.0% | |
| TGATTGCTTCCGGAAATGAA+TGG | + | chr4_4:47362741-47362760 | Msa0684110:CDS | 40.0% | |
| GATTGCTTCCGGAAATGAAT+GGG | + | chr4_4:47362742-47362761 | Msa0684110:CDS | 40.0% | |
| CTCATCAGCAAAAACACAAC+AGG | - | chr4_4:47362796-47362815 | None:intergenic | 40.0% | |
| GCAACTATGCTTGATAAGCA+AGG | + | chr4_4:47362835-47362854 | Msa0684110:three_prime_UTR | 40.0% | |
| GAAAGAAAAGAAGGGAGGGA+GGG | - | chr4_4:47359395-47359414 | None:intergenic | 45.0% | |
| AGAAAGAAAAGAAGGGAGGG+AGG | - | chr4_4:47359396-47359415 | None:intergenic | 45.0% | |
| TTTGAAGACGTGGAGAAGGA+TGG | + | chr4_4:47359468-47359487 | Msa0684110:exon | 45.0% | |
| TTGAAGACGTGGAGAAGGAT+GGG | + | chr4_4:47359469-47359488 | Msa0684110:exon | 45.0% | |
| ! | CTCTTTCGTGCTGTTCAACA+TGG | + | chr4_4:47359532-47359551 | Msa0684110:CDS | 45.0% |
| TGGCAGCAGCAATATGAAGA+GGG | - | chr4_4:47359636-47359655 | None:intergenic | 45.0% | |
| TTGGCAGCAGCAATATGAAG+AGG | - | chr4_4:47359637-47359656 | None:intergenic | 45.0% | |
| CTTCATATTGCTGCTGCCAA+TGG | + | chr4_4:47359637-47359656 | Msa0684110:CDS | 45.0% | |
| TTGAACCTGGATCTGACCAT+TGG | - | chr4_4:47359656-47359675 | None:intergenic | 45.0% | |
| CATTGCTGCCAACATAAGTG+GGG | - | chr4_4:47360116-47360135 | None:intergenic | 45.0% | |
| GCATTGCTGCCAACATAAGT+GGG | - | chr4_4:47360117-47360136 | None:intergenic | 45.0% | |
| TGCATTGCTGCCAACATAAG+TGG | - | chr4_4:47360118-47360137 | None:intergenic | 45.0% | |
| CTTATGTTGGCAGCAATGCA+TGG | + | chr4_4:47360118-47360137 | Msa0684110:CDS | 45.0% | |
| GTGGAAAAGTTGCTTGAAGC+TGG | + | chr4_4:47360154-47360173 | Msa0684110:CDS | 45.0% | |
| TATATTGCAGGGGGTTTGCA+CGG | + | chr4_4:47360502-47360521 | Msa0684110:intron | 45.0% | |
| GTGCACATTCTGTTGTGTAG+TGG | + | chr4_4:47360597-47360616 | Msa0684110:CDS | 45.0% | |
| !! | AAATGAAGAGGAGTACTCCC+AGG | - | chr4_4:47360763-47360782 | None:intergenic | 45.0% |
| CATCCGCGAATTGTTAGCAT+GGG | + | chr4_4:47360810-47360829 | Msa0684110:CDS | 45.0% | |
| ATCCGCGAATTGTTAGCATG+GGG | + | chr4_4:47360811-47360830 | Msa0684110:CDS | 45.0% | |
| ! | CTGTGTGTGTTTTATGCAGG+CGG | + | chr4_4:47361400-47361419 | Msa0684110:intron | 45.0% |
| TGTGGAGATGGAAGAGAGTA+AGG | - | chr4_4:47361621-47361640 | None:intergenic | 45.0% | |
| ATTCGATCAGAGTGTGGAGA+TGG | - | chr4_4:47361633-47361652 | None:intergenic | 45.0% | |
| ATCTCCACACTCTGATCGAA+TGG | + | chr4_4:47361632-47361651 | Msa0684110:CDS | 45.0% | |
| TCATCCATTCGATCAGAGTG+TGG | - | chr4_4:47361639-47361658 | None:intergenic | 45.0% | |
| ! | GTCAAGCCCACTTACCTTTT+AGG | + | chr4_4:47361951-47361970 | Msa0684110:intron | 45.0% |
| ! | ACCTTTTAGGCTTAGAGCTC+GGG | + | chr4_4:47361964-47361983 | Msa0684110:intron | 45.0% |
| GAAGTTACCAATGCGTGTAG+CGG | + | chr4_4:47362050-47362069 | Msa0684110:intron | 45.0% | |
| AACACTCTGCTGTCACAACA+AGG | + | chr4_4:47362475-47362494 | Msa0684110:CDS | 45.0% | |
| CTTCGACAGAATGGACAGAT+GGG | - | chr4_4:47362530-47362549 | None:intergenic | 45.0% | |
| GGTAGAAACTCACGAAGACA+TGG | + | chr4_4:47362577-47362596 | Msa0684110:CDS | 45.0% | |
| CACGAAGACATGGATCTAGA+CGG | + | chr4_4:47362587-47362606 | Msa0684110:CDS | 45.0% | |
| AAGCAATCATCCCGGAACTA+CGG | - | chr4_4:47362730-47362749 | None:intergenic | 45.0% | |
| ATTTCCGGAAGCAATCATCC+CGG | - | chr4_4:47362738-47362757 | None:intergenic | 45.0% | |
| !! | AACAGGTGTCGACATCATTG+TGG | - | chr4_4:47362779-47362798 | None:intergenic | 45.0% |
| ! | GGAAAGGCATGGCCTATTAT+TGG | + | chr4_4:47363093-47363112 | Msa0684110:three_prime_UTR | 45.0% |
| !!! | AAAAAAAAACATTTTTTTTT+CGG | - | chr4_4:47359853-47359872 | None:intergenic | 5.0% |
| !!! | AATTTGATTTTTTTTTTTTT+TGG | + | chr4_4:47359882-47359901 | Msa0684110:intron | 5.0% |
| !!! | ATTTGATTTTTTTTTTTTTT+GGG | + | chr4_4:47359883-47359902 | Msa0684110:intron | 5.0% |
| AGACAAACTTGGCTGTGGCA+TGG | - | chr4_4:47359320-47359339 | None:intergenic | 50.0% | |
| TGGAGAAGGATGGGTCAAAG+TGG | + | chr4_4:47359478-47359497 | Msa0684110:exon | 50.0% | |
| GGCAGCAGCAATATGAAGAG+GGG | - | chr4_4:47359635-47359654 | None:intergenic | 50.0% | |
| TTGGGGAACTTGGGCTCAAA+TGG | - | chr4_4:47359803-47359822 | None:intergenic | 50.0% | |
| TTGAGCCCAAGTTCCCCAAT+TGG | + | chr4_4:47359804-47359823 | Msa0684110:intron | 50.0% | |
| TGAGCCCAAGTTCCCCAATT+GGG | + | chr4_4:47359805-47359824 | Msa0684110:intron | 50.0% | |
| ACTAACCAAGAAGCAGCCAC+GGG | - | chr4_4:47360386-47360405 | None:intergenic | 50.0% | |
| GACTAACCAAGAAGCAGCCA+CGG | - | chr4_4:47360387-47360406 | None:intergenic | 50.0% | |
| ! | AGGTGCTACACCATTGCATC+TGG | + | chr4_4:47360548-47360567 | Msa0684110:CDS | 50.0% |
| ATCTGGCAGCTCGTCAAAGA+CGG | + | chr4_4:47360565-47360584 | Msa0684110:CDS | 50.0% | |
| GCATCCGCGAATTGTTAGCA+TGG | + | chr4_4:47360809-47360828 | Msa0684110:CDS | 50.0% | |
| CACCCCATGCTAACAATTCG+CGG | - | chr4_4:47360816-47360835 | None:intergenic | 50.0% | |
| CGAATTGTTAGCATGGGGTG+CGG | + | chr4_4:47360816-47360835 | Msa0684110:CDS | 50.0% | |
| GTCTCCAACGTGATGCATCT+GGG | + | chr4_4:47360842-47360861 | Msa0684110:CDS | 50.0% | |
| TGTACCCAGATGCATCACGT+TGG | - | chr4_4:47360849-47360868 | None:intergenic | 50.0% | |
| !!! | CAGCGTGCTTTTTCCTCCAT+AGG | - | chr4_4:47360943-47360962 | None:intergenic | 50.0% |
| ATGCAGGCGGATACCATATG+TGG | + | chr4_4:47361413-47361432 | Msa0684110:intron | 50.0% | |
| CATCTGCACAGCCTCTTGTA+TGG | + | chr4_4:47361484-47361503 | Msa0684110:CDS | 50.0% | |
| TTCCCTGTTCGCGTCCAATA+AGG | - | chr4_4:47361571-47361590 | None:intergenic | 50.0% | |
| TATTGGACGCGAACAGGGAA+AGG | + | chr4_4:47361571-47361590 | Msa0684110:CDS | 50.0% | |
| ATTGGACGCGAACAGGGAAA+GGG | + | chr4_4:47361572-47361591 | Msa0684110:CDS | 50.0% | |
| GGCTTGACTAAGTCGTTACC+CGG | - | chr4_4:47361939-47361958 | None:intergenic | 50.0% | |
| ! | CCTTTTAGGCTTAGAGCTCG+GGG | + | chr4_4:47361965-47361984 | Msa0684110:intron | 50.0% |
| CTAAAGGTAGCTCGTTGGGA+TGG | - | chr4_4:47361998-47362017 | None:intergenic | 50.0% | |
| ! | ATGCTGCATCTGCTTTGAGC+AGG | + | chr4_4:47362397-47362416 | Msa0684110:CDS | 50.0% |
| TGCATTGTGCACACATCTGG+TGG | - | chr4_4:47362451-47362470 | None:intergenic | 50.0% | |
| GTGTGCATTGTGCACACATC+TGG | - | chr4_4:47362454-47362473 | None:intergenic | 50.0% | |
| GGGATGCGAAGTTGAAGTGT+TGG | - | chr4_4:47362501-47362520 | None:intergenic | 50.0% | |
| ACAGAATGGACAGATGGGTG+GGG | - | chr4_4:47362525-47362544 | None:intergenic | 50.0% | |
| GACAGAATGGACAGATGGGT+GGG | - | chr4_4:47362526-47362545 | None:intergenic | 50.0% | |
| GCTTCGACAGAATGGACAGA+TGG | - | chr4_4:47362531-47362550 | None:intergenic | 50.0% | |
| GATATGGCGCTTCGACAGAA+TGG | - | chr4_4:47362539-47362558 | None:intergenic | 50.0% | |
| GGTAGCAGCAGCAGTTTCAA+GGG | + | chr4_4:47362668-47362687 | Msa0684110:CDS | 50.0% | |
| AAAATGAGCGGCCGTAGTTC+CGG | + | chr4_4:47362716-47362735 | Msa0684110:CDS | 50.0% | |
| AGTTCCGGGATGATTGCTTC+CGG | + | chr4_4:47362731-47362750 | Msa0684110:CDS | 50.0% | |
| AGGGAGGGACAGTGTCACAT+AGG | - | chr4_4:47359380-47359399 | None:intergenic | 55.0% | |
| TGCTGCCAATGGTCAGATCC+AGG | + | chr4_4:47359648-47359667 | Msa0684110:CDS | 55.0% | |
| TGCTGCTCAATCTAGTCCCG+TGG | + | chr4_4:47360367-47360386 | Msa0684110:CDS | 55.0% | |
| TGACGAGCTGCCAGATGCAA+TGG | - | chr4_4:47360561-47360580 | None:intergenic | 55.0% | |
| CGTCTCCAACGTGATGCATC+TGG | + | chr4_4:47360841-47360860 | Msa0684110:CDS | 55.0% | |
| !! | AGGCCTTATTGGACGCGAAC+AGG | + | chr4_4:47361565-47361584 | Msa0684110:CDS | 55.0% |
| !! | GGCCTTATTGGACGCGAACA+GGG | + | chr4_4:47361566-47361585 | Msa0684110:CDS | 55.0% |
| GACTAAGTCGTTACCCGGCT+GGG | - | chr4_4:47361934-47361953 | None:intergenic | 55.0% | |
| TGACTAAGTCGTTACCCGGC+TGG | - | chr4_4:47361935-47361954 | None:intergenic | 55.0% | |
| !! | CCCCGAGCTCTAAGCCTAAA+AGG | - | chr4_4:47361968-47361987 | None:intergenic | 55.0% |
| ACATCTGGTGGCCACAGTCT+TGG | - | chr4_4:47362439-47362458 | None:intergenic | 55.0% | |
| AATGGACAGATGGGTGGGGT+GGG | - | chr4_4:47362521-47362540 | None:intergenic | 55.0% | |
| CGACAGAATGGACAGATGGG+TGG | - | chr4_4:47362527-47362546 | None:intergenic | 55.0% | |
| GGGTAGCAGCAGCAGTTTCA+AGG | + | chr4_4:47362667-47362686 | Msa0684110:CDS | 55.0% | |
| AAATGAGCGGCCGTAGTTCC+GGG | + | chr4_4:47362717-47362736 | Msa0684110:CDS | 55.0% | |
| CTAGTCCCGTGGCTGCTTCT+TGG | + | chr4_4:47360378-47360397 | Msa0684110:CDS | 60.0% | |
| !! | TTTGGCTCTGCTGTCCCAGC+CGG | + | chr4_4:47361917-47361936 | Msa0684110:intron | 60.0% |
| ! | TGATGGGCCGCTACACGCAT+TGG | - | chr4_4:47362060-47362079 | None:intergenic | 60.0% |
| GAATGGACAGATGGGTGGGG+TGG | - | chr4_4:47362522-47362541 | None:intergenic | 60.0% | |
| !! | TTGGCTCTGCTGTCCCAGCC+GGG | + | chr4_4:47361918-47361937 | Msa0684110:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 47359290 | 47363121 | 47359290 | ID=Msa0684110;Name=Msa0684110 |
| chr4_4 | mRNA | 47359290 | 47363121 | 47359290 | ID=Msa0684110-mRNA-1;Parent=Msa0684110;Name=Msa0684110-mRNA-1;_AED=0.05;_eAED=0.05;_QI=197|1|1|1|1|1|8|337|447 |
| chr4_4 | exon | 47359290 | 47359669 | 47359290 | ID=Msa0684110-mRNA-1:exon:11644;Parent=Msa0684110-mRNA-1 |
| chr4_4 | exon | 47359915 | 47359974 | 47359915 | ID=Msa0684110-mRNA-1:exon:11645;Parent=Msa0684110-mRNA-1 |
| chr4_4 | exon | 47360112 | 47360183 | 47360112 | ID=Msa0684110-mRNA-1:exon:11646;Parent=Msa0684110-mRNA-1 |
| chr4_4 | exon | 47360278 | 47360399 | 47360278 | ID=Msa0684110-mRNA-1:exon:11647;Parent=Msa0684110-mRNA-1 |
| chr4_4 | exon | 47360512 | 47360652 | 47360512 | ID=Msa0684110-mRNA-1:exon:11648;Parent=Msa0684110-mRNA-1 |
| chr4_4 | exon | 47360756 | 47360863 | 47360756 | ID=Msa0684110-mRNA-1:exon:11649;Parent=Msa0684110-mRNA-1 |
| chr4_4 | exon | 47361419 | 47361671 | 47361419 | ID=Msa0684110-mRNA-1:exon:11650;Parent=Msa0684110-mRNA-1 |
| chr4_4 | exon | 47362380 | 47363121 | 47362380 | ID=Msa0684110-mRNA-1:exon:11651;Parent=Msa0684110-mRNA-1 |
| chr4_4 | five_prime_UTR | 47359290 | 47359486 | 47359290 | ID=Msa0684110-mRNA-1:five_prime_utr;Parent=Msa0684110-mRNA-1 |
| chr4_4 | CDS | 47359487 | 47359669 | 47359487 | ID=Msa0684110-mRNA-1:cds;Parent=Msa0684110-mRNA-1 |
| chr4_4 | CDS | 47359915 | 47359974 | 47359915 | ID=Msa0684110-mRNA-1:cds;Parent=Msa0684110-mRNA-1 |
| chr4_4 | CDS | 47360112 | 47360183 | 47360112 | ID=Msa0684110-mRNA-1:cds;Parent=Msa0684110-mRNA-1 |
| chr4_4 | CDS | 47360278 | 47360399 | 47360278 | ID=Msa0684110-mRNA-1:cds;Parent=Msa0684110-mRNA-1 |
| chr4_4 | CDS | 47360512 | 47360652 | 47360512 | ID=Msa0684110-mRNA-1:cds;Parent=Msa0684110-mRNA-1 |
| chr4_4 | CDS | 47360756 | 47360863 | 47360756 | ID=Msa0684110-mRNA-1:cds;Parent=Msa0684110-mRNA-1 |
| chr4_4 | CDS | 47361419 | 47361671 | 47361419 | ID=Msa0684110-mRNA-1:cds;Parent=Msa0684110-mRNA-1 |
| chr4_4 | CDS | 47362380 | 47362784 | 47362380 | ID=Msa0684110-mRNA-1:cds;Parent=Msa0684110-mRNA-1 |
| chr4_4 | three_prime_UTR | 47362785 | 47363121 | 47362785 | ID=Msa0684110-mRNA-1:three_prime_utr;Parent=Msa0684110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
