AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0661650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0661650 MtrunA17_Chr3g0144021 93.953 215 12 1 1 214 1 215 6.55e-153 422
Msa0661650 MtrunA17_Chr1g0212511 72.848 151 37 3 16 166 22 168 5.11e-74 224
Msa0661650 MtrunA17_Chr7g0222981 47.568 185 71 4 12 193 15 176 1.68e-47 154
Msa0661650 MtrunA17_Chr2g0283141 37.363 91 56 1 51 140 24 114 3.51e-15 73.6
Msa0661650 MtrunA17_Chr4g0043891 44.262 61 34 0 81 141 8 68 1.84e-13 67.4
Msa0661650 MtrunA17_Chr7g0223471 44.444 63 35 0 79 141 45 107 2.66e-13 67.8
Msa0661650 MtrunA17_Chr1g0153171 40.789 76 45 0 81 156 90 165 1.13e-12 65.1
Msa0661650 MtrunA17_Chr8g0392991 44.262 61 34 0 81 141 96 156 3.50e-12 64.7
Msa0661650 MtrunA17_Chr4g0031341 42.623 61 35 0 81 141 25 85 2.53e-11 61.2
Msa0661650 MtrunA17_Chr7g0238431 45.000 60 33 0 81 140 8 67 6.14e-11 59.7
Msa0661650 MtrunA17_Chr5g0436661 38.462 65 40 0 81 145 33 97 7.06e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0661650 AT4G35550.1 53.333 225 76 4 16 212 35 258 1.79e-69 213
Msa0661650 AT1G20700.1 49.738 191 83 4 12 200 24 203 1.94e-60 188
Msa0661650 AT1G20700.3 48.925 186 82 4 12 195 24 198 2.99e-57 180
Msa0661650 AT1G20700.2 49.275 138 59 2 63 200 15 141 4.31e-43 142
Msa0661650 AT1G20710.1 46.632 193 93 5 12 202 8 192 1.10e-42 142
Msa0661650 AT5G45980.1 46.774 62 33 0 79 140 53 114 1.65e-14 71.2
Msa0661650 AT2G33880.2 45.161 62 34 0 79 140 53 114 3.92e-14 70.9
Msa0661650 AT2G33880.1 45.161 62 34 0 79 140 53 114 4.47e-14 70.5
Msa0661650 AT1G46480.2 47.541 61 32 0 81 141 90 150 3.63e-13 65.9
Msa0661650 AT3G18010.1 40.845 71 42 0 81 151 76 146 6.65e-13 67.0
Msa0661650 AT1G46480.1 47.541 61 32 0 81 141 90 150 1.13e-12 65.5
Msa0661650 AT3G11260.1 36.458 96 56 2 81 173 24 117 1.43e-12 63.9
Msa0661650 AT5G05770.1 33.333 84 55 1 81 164 29 111 7.74e-12 60.8
Msa0661650 AT2G28610.1 46.667 60 32 0 81 140 8 67 8.57e-12 62.8
Msa0661650 AT5G59340.1 43.077 65 37 0 77 141 10 74 2.26e-11 62.0
Msa0661650 AT2G01500.1 35.577 104 57 2 67 160 37 140 7.52e-11 60.5

Find 54 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGAGACTAATGTTTATAAT+TGG 0.232522 4_3:-73134425 Msa0661650:CDS
TTGAACGAGCTCTTCTGTTC+TGG 0.269547 4_3:+73134400 None:intergenic
TGTTATAATACTATCTTATC+AGG 0.298547 4_3:-73133582 Msa0661650:three_prime_UTR
ATAGAATGTAATATCTTATC+AGG 0.334179 4_3:-73133541 Msa0661650:three_prime_UTR
TGATAAGATATTACATTCTA+TGG 0.339373 4_3:+73133543 None:intergenic
TATGTCTTTGATCTTCTGTT+TGG 0.364760 4_3:+73134479 None:intergenic
TACTTTCTTTGATAACTGAT+TGG 0.368334 4_3:-73133773 Msa0661650:exon
TTGGTTGATGACAGAATTCT+AGG 0.371445 4_3:-73133754 Msa0661650:three_prime_UTR
GCTATTACTGTGATTTGATC+AGG 0.372619 4_3:-73133611 Msa0661650:three_prime_UTR
TCAACTTCTGTGTCTGCCTC+TGG 0.402663 4_3:+73134336 None:intergenic
TATATATGCCACTTCATTTG+TGG 0.403737 4_3:+73133691 None:intergenic
GTCTTTGATCTTCTGTTTGG+TGG 0.403902 4_3:+73134482 None:intergenic
GTTTAGACTAAGTATACATT+TGG 0.408425 4_3:-73133473 Msa0661650:three_prime_UTR
CGTTGGAGTCCAACGCTGCC+TGG 0.416225 4_3:+73134557 None:intergenic
CTGGACACAAGATAACTTCC+AGG 0.432136 4_3:-73134575 Msa0661650:CDS
AATTCTAGGAGTGATCTATT+AGG 0.433239 4_3:-73133740 Msa0661650:three_prime_UTR
TGCAGGATTTGAGCACTTGT+TGG 0.434550 4_3:-73133828 Msa0661650:intron
CTCAACAAGCTGATCAGAAA+TGG 0.436221 4_3:+73135886 None:intergenic
TGAGAGTTTATCACCTCATC+GGG 0.446050 4_3:-73134262 Msa0661650:CDS
CCACTGATGATGGCTTGCTC+TGG 0.448763 4_3:-73134594 Msa0661650:CDS
GCAGGATTTGAGCACTTGTT+GGG 0.456755 4_3:-73133827 Msa0661650:intron
TCTTTGATCTTCTGTTTGGT+GGG 0.460764 4_3:+73134483 None:intergenic
TTGAGAGTTTATCACCTCAT+CGG 0.471970 4_3:-73134263 Msa0661650:CDS
AGTTATGACCGATGAACAAA+TGG 0.474281 4_3:-73135942 Msa0661650:CDS
ACCGTGTTGCCCTAGTTCAA+TGG 0.479896 4_3:+73134455 None:intergenic
TAAAAGTTCCATTTGTTCAT+CGG 0.487682 4_3:+73135934 None:intergenic
CATGAGAAGAGAGGAGGAGG+AGG 0.493735 4_3:-73135980 Msa0661650:CDS
AGGAAGAATGGCGGGATTAG+CGG 0.497878 4_3:-73136131 Msa0661650:five_prime_UTR
TACGCTCAAGTATTTGAAGC+TGG 0.512249 4_3:+73134529 None:intergenic
ATTTGAAGCTGGATAGGCGT+TGG 0.517894 4_3:+73134540 None:intergenic
TTAAGATTAATACCTATGTC+AGG 0.524253 4_3:+73134216 None:intergenic
GAGCATGAGAAGAGAGGAGG+AGG 0.524549 4_3:-73135983 Msa0661650:CDS
GTACTGTGATCCACTGATGA+TGG 0.540609 4_3:-73134604 Msa0661650:CDS
TCAAGTATTTGAAGCTGGAT+AGG 0.541162 4_3:+73134534 None:intergenic
AAGCAATCATCTGTTACTGC+AGG 0.542364 4_3:-73134372 Msa0661650:CDS
GAATGTTCAGGACTGAGACT+TGG 0.551998 4_3:-73134633 Msa0661650:intron
ACCTGCGAGGTCGTGTTGAG+TGG 0.570461 4_3:+73135847 None:intergenic
AAAGACATAACCATTGAACT+AGG 0.570662 4_3:-73134465 Msa0661650:CDS
ACCACTCAACACGACCTCGC+AGG 0.579613 4_3:-73135848 Msa0661650:intron
CCAATTATAAACATTAGTCT+CGG 0.584869 4_3:+73134425 None:intergenic
TTTATCACCTCATCGGGTCA+AGG 0.591799 4_3:-73134256 Msa0661650:CDS
AAGACATAACCATTGAACTA+GGG 0.603476 4_3:-73134464 Msa0661650:CDS
CCAGAGCAAGCCATCATCAG+TGG 0.606100 4_3:+73134594 None:intergenic
AGATAACTTCCAGGCAGCGT+TGG 0.612319 4_3:-73134566 Msa0661650:CDS
TATTACATTCTATGGTAACA+TGG 0.618469 4_3:+73133551 None:intergenic
TACATATCCTTGACCCGATG+AGG 0.618531 4_3:+73134249 None:intergenic
GAGGCAGAGCATGAGAAGAG+AGG 0.627339 4_3:-73135989 Msa0661650:CDS
AGGAAATCATGCAGAGCCAG+AGG 0.631315 4_3:-73134352 Msa0661650:CDS
GCAGAGCATGAGAAGAGAGG+AGG 0.631875 4_3:-73135986 Msa0661650:CDS
ACCATTGAACTAGGGCAACA+CGG 0.634091 4_3:-73134456 Msa0661650:CDS
TTGATGAACCACAAATGAAG+TGG 0.636166 4_3:-73133699 Msa0661650:three_prime_UTR
TACATTCAGAGTCCTGACAT+AGG 0.642781 4_3:-73134228 Msa0661650:intron
ATGGCGGGATTAGCGGAGAG+AGG 0.651628 4_3:-73136124 Msa0661650:five_prime_UTR
ATAGTAGTAGTTTACCTGCG+AGG 0.718032 4_3:+73135834 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATGAAAATAGTTTAA+CGG + chr4_3:73134399-73134418 None:intergenic 10.0%
!!! TTTAATTCTCTATTTTTTTA+AGG + chr4_3:73134840-73134859 None:intergenic 10.0%
!! CTGTAATATAACATTTATAT+AGG + chr4_3:73134059-73134078 None:intergenic 15.0%
!! CTATAAAAAAAAAACACTAA+AGG + chr4_3:73134761-73134780 None:intergenic 15.0%
!!! AAAACTAGTTTAATACAAAA+GGG + chr4_3:73135481-73135500 None:intergenic 15.0%
!!! AAAAACTAGTTTAATACAAA+AGG + chr4_3:73135482-73135501 None:intergenic 15.0%
!! TAAATTTATATGACATTAAG+TGG - chr4_3:73135782-73135801 Msa0661650:intron 15.0%
!! TATAAAGAAAAGAAAAAGAG+AGG - chr4_3:73133490-73133509 Msa0661650:three_prime_UTR 20.0%
!! AGAACTCAAAAAATTAAATG+TGG + chr4_3:73134261-73134280 None:intergenic 20.0%
!!! AAAACATTCATTTTTGTAAG+AGG - chr4_3:73134304-73134323 Msa0661650:CDS 20.0%
!!! GAACAGAAAAATTGATTTTT+TGG + chr4_3:73134626-73134645 None:intergenic 20.0%
!!! AATAATGTACGATGATTTTT+CGG + chr4_3:73134703-73134722 None:intergenic 20.0%
!! AAAAACACTAAAGGTTTAAT+TGG + chr4_3:73134752-73134771 None:intergenic 20.0%
!!! TTTTTATAGGTGAATATTAG+TGG - chr4_3:73134873-73134892 Msa0661650:intron 20.0%
!! ATTCAATTGTAAACAACAAA+TGG + chr4_3:73135676-73135695 None:intergenic 20.0%
!! TGTTATAATACTATCTTATC+AGG - chr4_3:73136059-73136078 Msa0661650:five_prime_UTR 20.0%
!! TGATAAGATATTACATTCTA+TGG + chr4_3:73136101-73136120 None:intergenic 20.0%
!! ATAGAATGTAATATCTTATC+AGG - chr4_3:73136100-73136119 Msa0661650:five_prime_UTR 20.0%
! AAGAAAAAGAAGAAGAGAAA+TGG - chr4_3:73133630-73133649 Msa0661650:three_prime_UTR 25.0%
! TAAAAGTTCCATTTGTTCAT+CGG + chr4_3:73133710-73133729 None:intergenic 25.0%
!! AGAAAGAGAATACATGATTT+TGG - chr4_3:73133992-73134011 Msa0661650:intron 25.0%
! ATATAGGCAAATTTGTCTAA+GGG + chr4_3:73134043-73134062 None:intergenic 25.0%
! TATATAGGCAAATTTGTCTA+AGG + chr4_3:73134044-73134063 None:intergenic 25.0%
! TGTTATATTGTTGATGTCAT+TGG - chr4_3:73134113-73134132 Msa0661650:intron 25.0%
! ACTAATGGAAACAACTTATT+TGG + chr4_3:73134489-73134508 None:intergenic 25.0%
!!! ACACTTTTTGGAATTACTAA+TGG + chr4_3:73134504-73134523 None:intergenic 25.0%
! CCTATAAAAAAAAACACTCA+AGG + chr4_3:73134863-73134882 None:intergenic 25.0%
!!! CCTTGAGTGTTTTTTTTTAT+AGG - chr4_3:73134860-73134879 Msa0661650:intron 25.0%
!! CCAATTATAAACATTAGTCT+CGG + chr4_3:73135219-73135238 None:intergenic 25.0%
! TTAAGATTAATACCTATGTC+AGG + chr4_3:73135428-73135447 None:intergenic 25.0%
! GTTGTTTACAATTGAATGAT+TGG - chr4_3:73135679-73135698 Msa0661650:intron 25.0%
! AATTACTTAGCTATAAAACC+TGG - chr4_3:73135727-73135746 Msa0661650:intron 25.0%
!! TACTTTCTTTGATAACTGAT+TGG - chr4_3:73135868-73135887 Msa0661650:CDS 25.0%
! TATTACATTCTATGGTAACA+TGG + chr4_3:73136093-73136112 None:intergenic 25.0%
!! CAATTTTCATCAAAATCTTG+TGG - chr4_3:73136126-73136145 Msa0661650:five_prime_UTR 25.0%
! GTTTAGACTAAGTATACATT+TGG - chr4_3:73136168-73136187 Msa0661650:five_prime_UTR 25.0%
AAAGAAAAAGAGAGGAAGAA+TGG - chr4_3:73133498-73133517 Msa0661650:three_prime_UTR 30.0%
TTTGGCAACAAGAAAAAGAA+AGG + chr4_3:73133571-73133590 None:intergenic 30.0%
TGTTGCCAAAAACAAAAGAT+AGG - chr4_3:73133581-73133600 Msa0661650:three_prime_UTR 30.0%
!!! CACTTCCTATCTTTTGTTTT+TGG + chr4_3:73133589-73133608 None:intergenic 30.0%
AAAAAGAAGAAGAGAAATGG+AGG - chr4_3:73133633-73133652 Msa0661650:three_prime_UTR 30.0%
GACATTGCATAATTTATGCA+GGG - chr4_3:73134204-73134223 Msa0661650:intron 30.0%
AAATTAAATGTGGAGAAGTG+AGG + chr4_3:73134251-73134270 None:intergenic 30.0%
! TAAACACTTGTGACACTTTT+TGG + chr4_3:73134516-73134535 None:intergenic 30.0%
TTCAAATAAGTCTGTCCAAA+CGG - chr4_3:73134550-73134569 Msa0661650:CDS 30.0%
!!! ATTGATTTTTTGGAATCGAG+AGG + chr4_3:73134616-73134635 None:intergenic 30.0%
GTCAATGTTATTGAATGTTC+AGG - chr4_3:73134996-73135015 Msa0661650:intron 30.0%
TATGTCTTTGATCTTCTGTT+TGG + chr4_3:73135165-73135184 None:intergenic 30.0%
AAAGACATAACCATTGAACT+AGG - chr4_3:73135176-73135195 Msa0661650:intron 30.0%
AAGACATAACCATTGAACTA+GGG - chr4_3:73135177-73135196 Msa0661650:intron 30.0%
CCGAGACTAATGTTTATAAT+TGG - chr4_3:73135216-73135235 Msa0661650:intron 30.0%
!! TCACATGTTTTGTTCTCTTT+TGG + chr4_3:73135335-73135354 None:intergenic 30.0%
TCTATGAATACTCACTAACT+AGG - chr4_3:73135450-73135469 Msa0661650:intron 30.0%
TTAATGCCTAAAACGAAGTA+TGG + chr4_3:73135765-73135784 None:intergenic 30.0%
!! ATTAAGTGGTTTGTTTATGC+AGG - chr4_3:73135796-73135815 Msa0661650:intron 30.0%
! AATTCTAGGAGTGATCTATT+AGG - chr4_3:73135901-73135920 Msa0661650:CDS 30.0%
! TTGTGGTTCATCAACATTTT+TGG + chr4_3:73135936-73135955 None:intergenic 30.0%
! TATATATGCCACTTCATTTG+TGG + chr4_3:73135953-73135972 None:intergenic 30.0%
AGTTATGACCGATGAACAAA+TGG - chr4_3:73133699-73133718 Msa0661650:three_prime_UTR 35.0%
GGACATTGCATAATTTATGC+AGG - chr4_3:73134203-73134222 Msa0661650:intron 35.0%
!!! TTTTTTGAGTTCTAGCCACT+AGG - chr4_3:73134268-73134287 Msa0661650:CDS 35.0%
!!! TTTTTTGTCTAGTAGCCTAG+TGG + chr4_3:73134286-73134305 None:intergenic 35.0%
CTTATTTCCATAAGCTCTCT+AGG + chr4_3:73134445-73134464 None:intergenic 35.0%
AGAGAGCTTATGGAAATAAG+CGG - chr4_3:73134445-73134464 Msa0661650:CDS 35.0%
AGTGTCACAAGTGTTTATGT+CGG - chr4_3:73134519-73134538 Msa0661650:CDS 35.0%
TCAAATAAGTCTGTCCAAAC+GGG - chr4_3:73134551-73134570 Msa0661650:CDS 35.0%
! AGTGAGTGCAGGATATATTT+TGG + chr4_3:73134578-73134597 None:intergenic 35.0%
CTAGTCCTAAATAAGTAGCT+CGG + chr4_3:73134955-73134974 None:intergenic 35.0%
! TCAAGTATTTGAAGCTGGAT+AGG + chr4_3:73135110-73135129 None:intergenic 35.0%
TCTTTGATCTTCTGTTTGGT+GGG + chr4_3:73135161-73135180 None:intergenic 35.0%
TTGAGAGTTTATCACCTCAT+CGG - chr4_3:73135378-73135397 Msa0661650:intron 35.0%
CACATGAAGAAATTCGTGTA+AGG - chr4_3:73135518-73135537 Msa0661650:intron 35.0%
ATTGTCAATCGTATCGAACA+TGG + chr4_3:73135547-73135566 None:intergenic 35.0%
ACAATTCTCTGTGTTCAGTT+AGG - chr4_3:73135562-73135581 Msa0661650:intron 35.0%
CAATTCTCTGTGTTCAGTTA+GGG - chr4_3:73135563-73135582 Msa0661650:intron 35.0%
AATTCTCTGTGTTCAGTTAG+GGG - chr4_3:73135564-73135583 Msa0661650:intron 35.0%
GTATGGCTGTTTATTTAACC+AGG + chr4_3:73135748-73135767 None:intergenic 35.0%
! AAACAGCCATACTTCGTTTT+AGG - chr4_3:73135756-73135775 Msa0661650:intron 35.0%
TTGGGAAAAATTGAAGTTGC+AGG - chr4_3:73135832-73135851 Msa0661650:intron 35.0%
!! TTGGTTGATGACAGAATTCT+AGG - chr4_3:73135887-73135906 Msa0661650:CDS 35.0%
!! GGTTCATCAACATTTTTGGA+TGG + chr4_3:73135932-73135951 None:intergenic 35.0%
TTGATGAACCACAAATGAAG+TGG - chr4_3:73135942-73135961 Msa0661650:CDS 35.0%
GCTATTACTGTGATTTGATC+AGG - chr4_3:73136030-73136049 Msa0661650:five_prime_UTR 35.0%
GAAAAAGAGAGGAAGAATGG+CGG - chr4_3:73133501-73133520 Msa0661650:three_prime_UTR 40.0%
AAAAAGAGAGGAAGAATGGC+GGG - chr4_3:73133502-73133521 Msa0661650:three_prime_UTR 40.0%
CTCAACAAGCTGATCAGAAA+TGG + chr4_3:73133758-73133777 None:intergenic 40.0%
ATAGTAGTAGTTTACCTGCG+AGG + chr4_3:73133810-73133829 None:intergenic 40.0%
TTGCATAATTTATGCAGGGC+TGG - chr4_3:73134208-73134227 Msa0661650:intron 40.0%
TGCATAATTTATGCAGGGCT+GGG - chr4_3:73134209-73134228 Msa0661650:intron 40.0%
TAGCTATCCTAGAGAGCTTA+TGG - chr4_3:73134435-73134454 Msa0661650:CDS 40.0%
!! GGATATATTTTGGACCCGTT+TGG + chr4_3:73134568-73134587 None:intergenic 40.0%
AAATTGGTTACAGTGAGTGC+AGG + chr4_3:73134589-73134608 None:intergenic 40.0%
GGAATCGAGAGGACAAAAAT+TGG + chr4_3:73134605-73134624 None:intergenic 40.0%
ACCAACCGAGCTACTTATTT+AGG - chr4_3:73134947-73134966 Msa0661650:intron 40.0%
TCCTAAATAAGTAGCTCGGT+TGG + chr4_3:73134951-73134970 None:intergenic 40.0%
GACAAGCGCTAAATCAATCA+AGG + chr4_3:73134979-73134998 None:intergenic 40.0%
! TACGCTCAAGTATTTGAAGC+TGG + chr4_3:73135115-73135134 None:intergenic 40.0%
! CTTGAGCGTATTTTCGATGA+AGG - chr4_3:73135125-73135144 Msa0661650:intron 40.0%
! CGTATTTTCGATGAAGGCAA+TGG - chr4_3:73135131-73135150 Msa0661650:intron 40.0%
GTCTTTGATCTTCTGTTTGG+TGG + chr4_3:73135162-73135181 None:intergenic 40.0%
AAGCAATCATCTGTTACTGC+AGG - chr4_3:73135269-73135288 Msa0661650:intron 40.0%
TGAGAGTTTATCACCTCATC+GGG - chr4_3:73135379-73135398 Msa0661650:intron 40.0%
TACATTCAGAGTCCTGACAT+AGG - chr4_3:73135413-73135432 Msa0661650:intron 40.0%
! TTTGTTGTCCCTAGCACAGT+TGG - chr4_3:73134177-73134196 Msa0661650:intron 45.0%
GAATGTTCAGGACTGAGACT+TGG - chr4_3:73135008-73135027 Msa0661650:intron 45.0%
GTACTGTGATCCACTGATGA+TGG - chr4_3:73135037-73135056 Msa0661650:intron 45.0%
CTGGACACAAGATAACTTCC+AGG - chr4_3:73135066-73135085 Msa0661650:intron 45.0%
! ATTTGAAGCTGGATAGGCGT+TGG + chr4_3:73135104-73135123 None:intergenic 45.0%
ACCATTGAACTAGGGCAACA+CGG - chr4_3:73135185-73135204 Msa0661650:intron 45.0%
TTGAACGAGCTCTTCTGTTC+TGG + chr4_3:73135244-73135263 None:intergenic 45.0%
TTTATCACCTCATCGGGTCA+AGG - chr4_3:73135385-73135404 Msa0661650:intron 45.0%
TACATATCCTTGACCCGATG+AGG + chr4_3:73135395-73135414 None:intergenic 45.0%
TGCAGGATTTGAGCACTTGT+TGG - chr4_3:73135813-73135832 Msa0661650:intron 45.0%
GCAGGATTTGAGCACTTGTT+GGG - chr4_3:73135814-73135833 Msa0661650:intron 45.0%
! AGGAAGAATGGCGGGATTAG+CGG - chr4_3:73133510-73133529 Msa0661650:three_prime_UTR 50.0%
! ATGTGGAGAAGTGAGGTGTC+CGG + chr4_3:73134244-73134263 None:intergenic 50.0%
!! CAAGGGACACTGAAGGTACT+AGG + chr4_3:73134923-73134942 None:intergenic 50.0%
CTAGTACCTTCAGTGTCCCT+TGG - chr4_3:73134921-73134940 Msa0661650:intron 50.0%
AGATAACTTCCAGGCAGCGT+TGG - chr4_3:73135075-73135094 Msa0661650:intron 50.0%
ACCGTGTTGCCCTAGTTCAA+TGG + chr4_3:73135189-73135208 None:intergenic 50.0%
AGGAAATCATGCAGAGCCAG+AGG - chr4_3:73135289-73135308 Msa0661650:intron 50.0%
TCAACTTCTGTGTCTGCCTC+TGG + chr4_3:73135308-73135327 None:intergenic 50.0%
GAGGCAGAGCATGAGAAGAG+AGG - chr4_3:73133652-73133671 Msa0661650:three_prime_UTR 55.0%
GCAGAGCATGAGAAGAGAGG+AGG - chr4_3:73133655-73133674 Msa0661650:three_prime_UTR 55.0%
GAGCATGAGAAGAGAGGAGG+AGG - chr4_3:73133658-73133677 Msa0661650:three_prime_UTR 55.0%
CATGAGAAGAGAGGAGGAGG+AGG - chr4_3:73133661-73133680 Msa0661650:three_prime_UTR 55.0%
TTGTCCCTAGCACAGTTGGC+AGG - chr4_3:73134181-73134200 Msa0661650:intron 55.0%
TGTCCCTAGCACAGTTGGCA+GGG - chr4_3:73134182-73134201 Msa0661650:intron 55.0%
TGTCCCTGCCAACTGTGCTA+GGG + chr4_3:73134188-73134207 None:intergenic 55.0%
ATGTCCCTGCCAACTGTGCT+AGG + chr4_3:73134189-73134208 None:intergenic 55.0%
! TGTGGAGAAGTGAGGTGTCC+GGG + chr4_3:73134243-73134262 None:intergenic 55.0%
!! TAGCTCGGTTGGTGAGCCAA+GGG + chr4_3:73134940-73134959 None:intergenic 55.0%
CCAGAGCAAGCCATCATCAG+TGG + chr4_3:73135050-73135069 None:intergenic 55.0%
!! CCACTGATGATGGCTTGCTC+TGG - chr4_3:73135047-73135066 Msa0661650:intron 55.0%
! ATGGCGGGATTAGCGGAGAG+AGG - chr4_3:73133517-73133536 Msa0661650:three_prime_UTR 60.0%
ACCACTCAACACGACCTCGC+AGG - chr4_3:73133793-73133812 Msa0661650:CDS 60.0%
ACCTGCGAGGTCGTGTTGAG+TGG + chr4_3:73133797-73133816 None:intergenic 60.0%
! GTGGAGAAGTGAGGTGTCCG+GGG + chr4_3:73134242-73134261 None:intergenic 60.0%
GGTGAGCCAAGGGACACTGA+AGG + chr4_3:73134930-73134949 None:intergenic 60.0%
!! GTAGCTCGGTTGGTGAGCCA+AGG + chr4_3:73134941-73134960 None:intergenic 60.0%
CAGGGCTGGGTTTCGAACCC+CGG - chr4_3:73134222-73134241 Msa0661650:intron 65.0%
CGTTGGAGTCCAACGCTGCC+TGG + chr4_3:73135087-73135106 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 73133472 73136191 73133472 ID=Msa0661650;Name=Msa0661650
chr4_3 mRNA 73133472 73136191 73133472 ID=Msa0661650-mRNA-1;Parent=Msa0661650;Name=Msa0661650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=177|1|1|1|0.5|0.33|3|312|214
chr4_3 exon 73133472 73133845 73133472 ID=Msa0661650-mRNA-1:exon:22039;Parent=Msa0661650-mRNA-1
chr4_3 exon 73134229 73134645 73134229 ID=Msa0661650-mRNA-1:exon:22038;Parent=Msa0661650-mRNA-1
chr4_3 exon 73135849 73136191 73135849 ID=Msa0661650-mRNA-1:exon:22037;Parent=Msa0661650-mRNA-1
chr4_3 five_prime_UTR 73136015 73136191 73136015 ID=Msa0661650-mRNA-1:five_prime_utr;Parent=Msa0661650-mRNA-1
chr4_3 CDS 73135849 73136014 73135849 ID=Msa0661650-mRNA-1:cds;Parent=Msa0661650-mRNA-1
chr4_3 CDS 73134229 73134645 73134229 ID=Msa0661650-mRNA-1:cds;Parent=Msa0661650-mRNA-1
chr4_3 CDS 73133784 73133845 73133784 ID=Msa0661650-mRNA-1:cds;Parent=Msa0661650-mRNA-1
chr4_3 three_prime_UTR 73133472 73133783 73133472 ID=Msa0661650-mRNA-1:three_prime_utr;Parent=Msa0661650-mRNA-1
Gene Sequence

>Msa0661650

ATGGAGGCAGAGCATGAGAAGAGAGGAGGAGGAGGACTTTATAGCGTGAAAGTTATGACCGATGAACAAATGGAACTTTTAAGACAACAGATATCTGTTTACATCACCATTTCTGATCAGCTTGTTGAGATGCATAAATCTGTTACCACTCAACACGACCTCGCAGGACTGAGACTTGGTAATTTGTACTGTGATCCACTGATGATGGCTTGCTCTGGACACAAGATAACTTCCAGGCAGCGTTGGACTCCAACGCCTATCCAGCTTCAAATACTTGAGCGTATTTTCGATGAAGGCAATGGCACTCCCACCAAACAGAAGATCAAAGACATAACCATTGAACTAGGGCAACACGGTCAAATATCCGAGACTAATGTTTATAATTGGTTCCAGAACAGAAGAGCTCGTTCAAAGCGCAAGCAATCATCTGTTACTGCAGGAAATCATGCAGAGCCAGAGGCAGACACAGAAGTTGAGTCTCCAAAAGAGAACAAAACATGTGAAGAAAGCGATCTAGTTCAGTTCTTTGAGAGTTTATCACCTCATCGGGTCAAGGATATGTACATTCAGAGTCCTGACATAGGATTTGAGCACTTGTTGGGAAAAATTGAAGTTGCAGGCTGCTATAATTCTTACTTTCTTTGA

Protein sequence

>Msa0661650

MEAEHEKRGGGGLYSVKVMTDEQMELLRQQISVYITISDQLVEMHKSVTTQHDLAGLRLGNLYCDPLMMACSGHKITSRQRWTPTPIQLQILERIFDEGNGTPTKQKIKDITIELGQHGQISETNVYNWFQNRRARSKRKQSSVTAGNHAEPEADTEVESPKENKTCEESDLVQFFESLSPHRVKDMYIQSPDIGFEHLLGKIEVAGCYNSYFL*