AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1100050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1100050 MtrunA17_Chr7g0216481 91.045 134 9 1 1 131 1 134 2.07e-80 232
Msa1100050 MtrunA17_Chr5g0415771 55.385 130 54 1 1 130 1 126 7.78e-41 132
Msa1100050 MtrunA17_Chr5g0415761 53.077 130 58 1 1 130 1 127 1.32e-39 129
Msa1100050 MtrunA17_Chr5g0415741 54.701 117 53 0 14 130 9 125 7.12e-39 127
Msa1100050 MtrunA17_Chr1g0155721 48.214 112 58 0 19 130 2 113 1.61e-38 126
Msa1100050 MtrunA17_Chr3g0142051 46.847 111 59 0 19 129 2 112 1.21e-35 119
Msa1100050 MtrunA17_Chr5g0404831 46.018 113 61 0 19 131 4 116 1.06e-34 116
Msa1100050 MtrunA17_Chr8g0393201 42.574 101 58 0 29 129 233 333 9.66e-27 101
Msa1100050 MtrunA17_Chr7g0245141 38.095 105 65 0 22 126 23 127 2.10e-25 93.6
Msa1100050 MtrunA17_Chr8g0334481 35.238 105 68 0 22 126 25 129 1.59e-24 91.3
Msa1100050 MtrunA17_Chr2g0280411 37.143 105 66 0 23 127 9 113 4.33e-24 89.7
Msa1100050 MtrunA17_Chr4g0042051 36.697 109 69 0 18 126 5 113 8.39e-24 89.0
Msa1100050 MtrunA17_Chr2g0319291 35.398 113 73 0 14 126 1 113 2.28e-23 87.8
Msa1100050 MtrunA17_Chr1g0201781 35.955 89 55 2 41 127 74 162 1.21e-18 77.0
Msa1100050 MtrunA17_Chr1g0211871 38.298 94 53 3 35 127 77 166 1.24e-17 74.7
Msa1100050 MtrunA17_Chr3g0125821 36.082 97 55 4 38 129 78 172 1.28e-17 74.3
Msa1100050 MtrunA17_Chr2g0317731 36.145 83 51 2 48 128 89 171 1.49e-16 71.6
Msa1100050 MtrunA17_Chr7g0264661 28.972 107 74 1 23 129 23 127 1.22e-15 68.2
Msa1100050 MtrunA17_Chr8g0360031 34.343 99 60 4 32 128 79 174 1.55e-15 68.9
Msa1100050 MtrunA17_Chr7g0249461 39.744 78 46 1 46 122 99 176 1.79e-15 69.3
Msa1100050 MtrunA17_Chr4g0052481 31.707 82 54 1 49 128 85 166 4.43e-15 67.8
Msa1100050 MtrunA17_Chr4g0044731 36.842 76 47 1 48 122 84 159 3.39e-14 65.5
Msa1100050 MtrunA17_Chr4g0047431 35.000 80 52 0 49 128 25 104 2.25e-12 62.8
Msa1100050 MtrunA17_Chr1g0173181 32.468 77 51 1 43 118 425 501 2.43e-11 59.7
Msa1100050 MtrunA17_Chr3g0142031 56.098 41 18 0 79 119 5 45 3.47e-11 54.7
Msa1100050 MtrunA17_Chr2g0317701 34.667 75 47 2 44 116 61 135 5.92e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1100050 AT5G39950.1 58.647 133 53 1 1 131 1 133 6.15e-56 171
Msa1100050 AT1G45145.1 52.475 101 48 0 29 129 11 111 9.72e-36 119
Msa1100050 AT3G51030.1 46.018 113 61 0 19 131 2 114 3.39e-34 115
Msa1100050 AT1G59730.1 42.748 131 71 2 1 130 1 128 7.45e-34 115
Msa1100050 AT1G19730.1 46.429 112 59 1 19 129 2 113 2.45e-33 113
Msa1100050 AT1G69880.1 51.546 97 47 0 33 129 47 143 3.28e-33 114
Msa1100050 AT5G42980.1 47.059 102 54 0 29 130 11 112 2.57e-31 108
Msa1100050 AT3G17880.2 40.000 105 63 0 25 129 265 369 1.13e-25 99.8
Msa1100050 AT3G17880.1 40.000 105 63 0 25 129 272 376 1.40e-25 99.4
Msa1100050 AT3G56420.1 38.298 94 58 0 33 126 50 143 2.73e-24 91.7
Msa1100050 AT3G56420.2 38.298 94 58 0 33 126 50 143 2.73e-24 91.7
Msa1100050 AT3G56420.3 38.298 94 58 0 33 126 50 143 2.73e-24 91.7
Msa1100050 AT3G08710.2 43.011 93 53 0 34 126 34 126 3.06e-24 90.9
Msa1100050 AT3G08710.3 43.011 93 53 0 34 126 34 126 3.06e-24 90.9
Msa1100050 AT3G08710.1 43.011 93 53 0 34 126 34 126 3.06e-24 90.9
Msa1100050 AT2G40790.2 38.298 94 58 0 33 126 50 143 1.36e-21 84.7
Msa1100050 AT2G40790.1 38.298 94 58 0 33 126 50 143 1.36e-21 84.7
Msa1100050 AT1G11530.1 38.144 97 60 0 30 126 9 105 2.55e-21 82.8
Msa1100050 AT1G43560.1 36.697 109 66 3 12 117 41 149 9.47e-20 80.1
Msa1100050 AT1G76760.1 39.744 78 46 1 41 117 77 154 7.76e-19 77.8
Msa1100050 AT1G50320.1 44.286 70 38 1 43 111 85 154 4.99e-17 73.6
Msa1100050 AT3G02730.1 36.782 87 54 1 46 131 88 174 5.95e-17 73.2
Msa1100050 AT3G15360.1 32.673 101 63 4 30 128 92 189 2.47e-16 72.0
Msa1100050 AT1G03680.1 36.145 83 51 2 48 128 95 177 7.06e-16 70.5
Msa1100050 AT3G53220.1 26.549 113 81 1 17 129 15 125 1.73e-15 68.2
Msa1100050 AT4G03520.1 34.940 83 52 2 48 128 101 183 2.29e-15 69.3
Msa1100050 AT1G31020.1 30.000 110 75 1 21 128 47 156 4.02e-15 68.2
Msa1100050 AT2G35010.2 34.146 82 52 1 49 128 110 191 5.24e-15 68.6
Msa1100050 AT2G35010.1 34.146 82 52 1 49 128 110 191 5.24e-15 68.6
Msa1100050 AT5G16400.1 32.184 87 58 1 46 131 98 184 1.54e-14 67.0
Msa1100050 AT4G04950.1 33.645 107 67 1 22 128 2 104 4.21e-14 68.2
Msa1100050 AT4G32580.1 31.868 91 62 0 38 128 14 104 4.73e-14 65.1
Msa1100050 AT1G52990.1 32.632 95 63 1 36 129 218 312 1.65e-13 65.9
Msa1100050 AT4G26160.1 32.292 96 61 2 38 129 105 200 2.24e-12 62.0
Msa1100050 AT2G41680.1 28.889 90 62 2 43 130 440 529 1.12e-11 61.2

Find 47 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGCAAAATTGATGTATT+TGG 0.184205 7_3:-29492088 Msa1100050:three_prime_UTR
GGATGTGGCACAAGAGTTTA+AGG 0.257673 7_3:-29492396 Msa1100050:CDS
ATGTAGAAAGTTAAGTTATA+TGG 0.292169 7_3:+29491935 None:intergenic
TGAAACCCTCTGTCCTGTTT+TGG 0.295085 7_3:-29491991 Msa1100050:three_prime_UTR
GTTGTATAATTTGAATTTGT+TGG 0.301363 7_3:-29492178 Msa1100050:three_prime_UTR
GTTTCCAACAATTGATTCAT+AGG 0.346322 7_3:-29491912 Msa1100050:three_prime_UTR
AATCGATGTTGATGAATTAT+CGG 0.348841 7_3:-29493033 Msa1100050:intron
TGCTGTTGACTTTACTTGCT+TGG 0.350980 7_3:+29493398 None:intergenic
ACCAATATGATGTTGTTCAT+TGG 0.363484 7_3:-29492147 Msa1100050:three_prime_UTR
ATTGTCAATTGCAACTGTTT+TGG 0.366693 7_3:-29492025 Msa1100050:three_prime_UTR
TTGACCTATGAATCAATTGT+TGG 0.382534 7_3:+29491908 None:intergenic
TCCAATGAACAACATCATAT+TGG 0.401700 7_3:+29492146 None:intergenic
AAAGAGGTTGATAAGGTTGT+TGG 0.418770 7_3:-29492335 Msa1100050:CDS
TTAGCCATAGCTTGAAGAAT+CGG 0.442276 7_3:+29493083 None:intergenic
TACGGGGCCACCGCCGACTA+AGG 0.453115 7_3:+29493356 None:intergenic
CGTTTGTGTTGTTGAAGAAT+GGG 0.453169 7_3:-29492358 Msa1100050:CDS
TTGTATAATTTGAATTTGTT+GGG 0.455935 7_3:-29492177 Msa1100050:three_prime_UTR
ACGTTTGTGTTGTTGAAGAA+TGG 0.456074 7_3:-29492359 Msa1100050:CDS
TAAGGTTGTTGGAGCAAAGA+AGG 0.462298 7_3:-29492324 Msa1100050:CDS
TGATTGATTTCTCTGCTACA+TGG 0.471205 7_3:-29493130 Msa1100050:CDS
CAAGTAAAGTCAACAGCAAT+GGG 0.473511 7_3:-29493393 Msa1100050:exon
TGACAAGAAGACTCCAAAAC+AGG 0.482997 7_3:+29491978 None:intergenic
TGATGATTCTGATGACTGTA+CGG 0.487264 7_3:+29493338 None:intergenic
TTCTCCTCCTTAGTCGGCGG+TGG 0.490865 7_3:-29493363 Msa1100050:CDS
GAATGGGAAAGAGGTTGATA+AGG 0.491854 7_3:-29492342 Msa1100050:CDS
GATGATTCTGATGACTGTAC+GGG 0.500909 7_3:+29493339 None:intergenic
TTATAAAGATACATGTCATA+AGG 0.517803 7_3:-29493429 None:intergenic
GATTTCTCTGCTACATGGTG+TGG 0.519111 7_3:-29493125 Msa1100050:CDS
GGCACAAGAGTTTAAGGTGC+AGG 0.519916 7_3:-29492390 Msa1100050:CDS
TCTTCTTGTCACTTGTTTCG+CGG 0.526837 7_3:-29491966 Msa1100050:three_prime_UTR
GTGTGGACCTTGTAAAATGA+TGG 0.541235 7_3:-29493108 Msa1100050:CDS
GCAAGTAAAGTCAACAGCAA+TGG 0.545391 7_3:-29493394 Msa1100050:exon
CCTTCCACTCATCTGCTCGC+TGG 0.549073 7_3:-29493296 Msa1100050:CDS
GTTGTTGAAGAATGGGAAAG+AGG 0.553595 7_3:-29492351 Msa1100050:CDS
AGATGAGTGGAAGGTCTTGA+CGG 0.570930 7_3:+29493305 None:intergenic
GGAACCGATTCTTCAAGCTA+TGG 0.574314 7_3:-29493087 Msa1100050:CDS
GTTGCCAGCGAGCAGATGAG+TGG 0.605035 7_3:+29493292 None:intergenic
TTCTTCAACAACACAAACGT+TGG 0.610426 7_3:+29492362 None:intergenic
AGACTCCAAAACAGGACAGA+GGG 0.617670 7_3:+29491986 None:intergenic
GGGGCCACCGCCGACTAAGG+AGG 0.625459 7_3:+29493359 None:intergenic
CCAGCGAGCAGATGAGTGGA+AGG 0.627549 7_3:+29493296 None:intergenic
ATGATACTGTGAATGTGATG+TGG 0.634907 7_3:-29492049 Msa1100050:three_prime_UTR
TGAGTATAATCTTATCACCA+TGG 0.657251 7_3:-29492214 Msa1100050:three_prime_UTR
ACTTTGAGCAGATATGATGT+GGG 0.676948 7_3:+29491875 None:intergenic
CAACTTTATCATCATCACCA+TGG 0.681834 7_3:+29492197 None:intergenic
AAGACTCCAAAACAGGACAG+AGG 0.709414 7_3:+29491985 None:intergenic
ATGATTCTGATGACTGTACG+GGG 0.715538 7_3:+29493340 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATGTTATTTGTTAAAA+TGG - chr7_3:29492456-29492475 Msa1100050:intron 10.0%
!!! TAACTAAAAAAATACATTTT+TGG - chr7_3:29492522-29492541 Msa1100050:intron 10.0%
!!! TCATTTTTACAAATTATTAT+CGG - chr7_3:29492813-29492832 Msa1100050:intron 10.0%
!!! AATTATGTTATTTGTTAAAA+TGG - chr7_3:29492456-29492475 Msa1100050:intron 10.0%
!!! TAACTAAAAAAATACATTTT+TGG - chr7_3:29492522-29492541 Msa1100050:intron 10.0%
!!! TCATTTTTACAAATTATTAT+CGG - chr7_3:29492813-29492832 Msa1100050:intron 10.0%
!!! ATTGTATGTTATTTTTTTGA+GGG - chr7_3:29492429-29492448 Msa1100050:intron 15.0%
!!! AATTATACAAAAAGCATTTA+AGG - chr7_3:29492588-29492607 Msa1100050:intron 15.0%
!!! ATAATGTTTTAATTTTTGTG+TGG - chr7_3:29492877-29492896 Msa1100050:intron 15.0%
!!! TTGTATAATTTGAATTTGTT+GGG - chr7_3:29493138-29493157 Msa1100050:intron 15.0%
!!! ATTGTATGTTATTTTTTTGA+GGG - chr7_3:29492429-29492448 Msa1100050:intron 15.0%
!!! AATTATACAAAAAGCATTTA+AGG - chr7_3:29492588-29492607 Msa1100050:intron 15.0%
!!! ATAATGTTTTAATTTTTGTG+TGG - chr7_3:29492877-29492896 Msa1100050:intron 15.0%
!!! TTGTATAATTTGAATTTGTT+GGG - chr7_3:29493138-29493157 Msa1100050:intron 15.0%
!! CCAAAAAATAGAAAAATGAA+TGG + chr7_3:29492121-29492140 None:intergenic 20.0%
!!! CCATTCATTTTTCTATTTTT+TGG - chr7_3:29492118-29492137 Msa1100050:three_prime_UTR 20.0%
!!! CATTGTATGTTATTTTTTTG+AGG - chr7_3:29492428-29492447 Msa1100050:intron 20.0%
!!! ATGTTATTTGTTAAAATGGA+TGG - chr7_3:29492460-29492479 Msa1100050:intron 20.0%
!!! TTAATTTTTGTGTGGTTTTT+TGG - chr7_3:29492885-29492904 Msa1100050:intron 20.0%
!! GTTGTATAATTTGAATTTGT+TGG - chr7_3:29493137-29493156 Msa1100050:CDS 20.0%
!! ATGTAGAAAGTTAAGTTATA+TGG + chr7_3:29493383-29493402 None:intergenic 20.0%
!! CCAAAAAATAGAAAAATGAA+TGG + chr7_3:29492121-29492140 None:intergenic 20.0%
!!! CCATTCATTTTTCTATTTTT+TGG - chr7_3:29492118-29492137 Msa1100050:three_prime_UTR 20.0%
!!! CATTGTATGTTATTTTTTTG+AGG - chr7_3:29492428-29492447 Msa1100050:intron 20.0%
!!! ATGTTATTTGTTAAAATGGA+TGG - chr7_3:29492460-29492479 Msa1100050:intron 20.0%
!!! TTAATTTTTGTGTGGTTTTT+TGG - chr7_3:29492885-29492904 Msa1100050:intron 20.0%
!! GTTGTATAATTTGAATTTGT+TGG - chr7_3:29493137-29493156 Msa1100050:CDS 20.0%
!! ATGTAGAAAGTTAAGTTATA+TGG + chr7_3:29493383-29493402 None:intergenic 20.0%
! ATTGAGATCTAAAGAGATAT+GGG + chr7_3:29492090-29492109 None:intergenic 25.0%
! TATTGAGATCTAAAGAGATA+TGG + chr7_3:29492091-29492110 None:intergenic 25.0%
!!! TTTTGATTTTCTGTTTGTGA+AGG - chr7_3:29492159-29492178 Msa1100050:three_prime_UTR 25.0%
!! AATCGATGTTGATGAATTAT+CGG - chr7_3:29492282-29492301 Msa1100050:exon 25.0%
! ACAGTATAGTTGATCAAATT+GGG + chr7_3:29492321-29492340 None:intergenic 25.0%
! AACAGTATAGTTGATCAAAT+TGG + chr7_3:29492322-29492341 None:intergenic 25.0%
!! ACCATATTTTACTTACTTGA+CGG + chr7_3:29492673-29492692 None:intergenic 25.0%
! AGAAGCAAAATTGATGTATT+TGG - chr7_3:29493227-29493246 Msa1100050:intron 25.0%
! ATTGAGATCTAAAGAGATAT+GGG + chr7_3:29492090-29492109 None:intergenic 25.0%
! TATTGAGATCTAAAGAGATA+TGG + chr7_3:29492091-29492110 None:intergenic 25.0%
!!! TTTTGATTTTCTGTTTGTGA+AGG - chr7_3:29492159-29492178 Msa1100050:three_prime_UTR 25.0%
!! AATCGATGTTGATGAATTAT+CGG - chr7_3:29492282-29492301 Msa1100050:exon 25.0%
! ACAGTATAGTTGATCAAATT+GGG + chr7_3:29492321-29492340 None:intergenic 25.0%
! AACAGTATAGTTGATCAAAT+TGG + chr7_3:29492322-29492341 None:intergenic 25.0%
!! ACCATATTTTACTTACTTGA+CGG + chr7_3:29492673-29492692 None:intergenic 25.0%
! AGAAGCAAAATTGATGTATT+TGG - chr7_3:29493227-29493246 Msa1100050:intron 25.0%
! TTCTTTAGATGTTTTTCGTG+TGG - chr7_3:29492495-29492514 Msa1100050:intron 30.0%
ACCGTCAAGTAAGTAAAATA+TGG - chr7_3:29492669-29492688 Msa1100050:intron 30.0%
! TGGTCAAAAATTGATTCACT+CGG - chr7_3:29492689-29492708 Msa1100050:intron 30.0%
!! ATTTTTGTGTGGTTTTTTGG+TGG - chr7_3:29492888-29492907 Msa1100050:intron 30.0%
!! TTTTTGTGTGGTTTTTTGGT+GGG - chr7_3:29492889-29492908 Msa1100050:intron 30.0%
GAAGGATGAACTTAAAAACA+AGG - chr7_3:29493009-29493028 Msa1100050:intron 30.0%
TGAGTATAATCTTATCACCA+TGG - chr7_3:29493101-29493120 Msa1100050:CDS 30.0%
ACCAATATGATGTTGTTCAT+TGG - chr7_3:29493168-29493187 Msa1100050:intron 30.0%
TCCAATGAACAACATCATAT+TGG + chr7_3:29493172-29493191 None:intergenic 30.0%
! ATTGTCAATTGCAACTGTTT+TGG - chr7_3:29493290-29493309 Msa1100050:CDS 30.0%
! GTTTCCAACAATTGATTCAT+AGG - chr7_3:29493403-29493422 Msa1100050:five_prime_UTR 30.0%
TTGACCTATGAATCAATTGT+TGG + chr7_3:29493410-29493429 None:intergenic 30.0%
! TTCTTTAGATGTTTTTCGTG+TGG - chr7_3:29492495-29492514 Msa1100050:intron 30.0%
ACCGTCAAGTAAGTAAAATA+TGG - chr7_3:29492669-29492688 Msa1100050:intron 30.0%
! TGGTCAAAAATTGATTCACT+CGG - chr7_3:29492689-29492708 Msa1100050:intron 30.0%
!! ATTTTTGTGTGGTTTTTTGG+TGG - chr7_3:29492888-29492907 Msa1100050:intron 30.0%
!! TTTTTGTGTGGTTTTTTGGT+GGG - chr7_3:29492889-29492908 Msa1100050:intron 30.0%
GAAGGATGAACTTAAAAACA+AGG - chr7_3:29493009-29493028 Msa1100050:intron 30.0%
TGAGTATAATCTTATCACCA+TGG - chr7_3:29493101-29493120 Msa1100050:CDS 30.0%
ACCAATATGATGTTGTTCAT+TGG - chr7_3:29493168-29493187 Msa1100050:intron 30.0%
TCCAATGAACAACATCATAT+TGG + chr7_3:29493172-29493191 None:intergenic 30.0%
! ATTGTCAATTGCAACTGTTT+TGG - chr7_3:29493290-29493309 Msa1100050:CDS 30.0%
! GTTTCCAACAATTGATTCAT+AGG - chr7_3:29493403-29493422 Msa1100050:five_prime_UTR 30.0%
TTGACCTATGAATCAATTGT+TGG + chr7_3:29493410-29493429 None:intergenic 30.0%
CAAGTAAAGTCAACAGCAAT+GGG - chr7_3:29491922-29491941 Msa1100050:three_prime_UTR 35.0%
!! TCATTTTTCTCCTCCTTAGT+CGG - chr7_3:29491946-29491965 Msa1100050:three_prime_UTR 35.0%
TGATGATTCTGATGACTGTA+CGG + chr7_3:29491980-29491999 None:intergenic 35.0%
! TGATTTTCTGTTTGTGAAGG+TGG - chr7_3:29492162-29492181 Msa1100050:three_prime_UTR 35.0%
! TGATTGATTTCTCTGCTACA+TGG - chr7_3:29492185-29492204 Msa1100050:three_prime_UTR 35.0%
!! ATCGGTTCCATCATTTTACA+AGG + chr7_3:29492217-29492236 None:intergenic 35.0%
TTAGCCATAGCTTGAAGAAT+CGG + chr7_3:29492235-29492254 None:intergenic 35.0%
!!! AATTTTTAGCACCGACACTT+CGG - chr7_3:29492356-29492375 Msa1100050:CDS 35.0%
!!! GGTTTTTTGGTGGGAATTAT+AGG - chr7_3:29492898-29492917 Msa1100050:intron 35.0%
TTCTTCAACAACACAAACGT+TGG + chr7_3:29492956-29492975 None:intergenic 35.0%
! ACGTTTGTGTTGTTGAAGAA+TGG - chr7_3:29492956-29492975 Msa1100050:intron 35.0%
! CGTTTGTGTTGTTGAAGAAT+GGG - chr7_3:29492957-29492976 Msa1100050:intron 35.0%
!! AAAGAGGTTGATAAGGTTGT+TGG - chr7_3:29492980-29492999 Msa1100050:intron 35.0%
CAACTTTATCATCATCACCA+TGG + chr7_3:29493121-29493140 None:intergenic 35.0%
ATGATACTGTGAATGTGATG+TGG - chr7_3:29493266-29493285 Msa1100050:CDS 35.0%
CAAGTAAAGTCAACAGCAAT+GGG - chr7_3:29491922-29491941 Msa1100050:three_prime_UTR 35.0%
!! TCATTTTTCTCCTCCTTAGT+CGG - chr7_3:29491946-29491965 Msa1100050:three_prime_UTR 35.0%
TGATGATTCTGATGACTGTA+CGG + chr7_3:29491980-29491999 None:intergenic 35.0%
! TGATTTTCTGTTTGTGAAGG+TGG - chr7_3:29492162-29492181 Msa1100050:three_prime_UTR 35.0%
! TGATTGATTTCTCTGCTACA+TGG - chr7_3:29492185-29492204 Msa1100050:three_prime_UTR 35.0%
!! ATCGGTTCCATCATTTTACA+AGG + chr7_3:29492217-29492236 None:intergenic 35.0%
TTAGCCATAGCTTGAAGAAT+CGG + chr7_3:29492235-29492254 None:intergenic 35.0%
!!! AATTTTTAGCACCGACACTT+CGG - chr7_3:29492356-29492375 Msa1100050:CDS 35.0%
!!! GGTTTTTTGGTGGGAATTAT+AGG - chr7_3:29492898-29492917 Msa1100050:intron 35.0%
TTCTTCAACAACACAAACGT+TGG + chr7_3:29492956-29492975 None:intergenic 35.0%
! ACGTTTGTGTTGTTGAAGAA+TGG - chr7_3:29492956-29492975 Msa1100050:intron 35.0%
! CGTTTGTGTTGTTGAAGAAT+GGG - chr7_3:29492957-29492976 Msa1100050:intron 35.0%
!! AAAGAGGTTGATAAGGTTGT+TGG - chr7_3:29492980-29492999 Msa1100050:intron 35.0%
CAACTTTATCATCATCACCA+TGG + chr7_3:29493121-29493140 None:intergenic 35.0%
ATGATACTGTGAATGTGATG+TGG - chr7_3:29493266-29493285 Msa1100050:CDS 35.0%
!! TGCTGTTGACTTTACTTGCT+TGG + chr7_3:29491920-29491939 None:intergenic 40.0%
GCAAGTAAAGTCAACAGCAA+TGG - chr7_3:29491921-29491940 Msa1100050:three_prime_UTR 40.0%
ATGATTCTGATGACTGTACG+GGG + chr7_3:29491978-29491997 None:intergenic 40.0%
GATGATTCTGATGACTGTAC+GGG + chr7_3:29491979-29491998 None:intergenic 40.0%
GTGTGGACCTTGTAAAATGA+TGG - chr7_3:29492207-29492226 Msa1100050:three_prime_UTR 40.0%
TTGGTGGGAATTATAGGATG+TGG - chr7_3:29492904-29492923 Msa1100050:intron 40.0%
GTTGTTGAAGAATGGGAAAG+AGG - chr7_3:29492964-29492983 Msa1100050:intron 40.0%
!! GAATGGGAAAGAGGTTGATA+AGG - chr7_3:29492973-29492992 Msa1100050:intron 40.0%
TAAGGTTGTTGGAGCAAAGA+AGG - chr7_3:29492991-29493010 Msa1100050:intron 40.0%
!!! GCAACTGTTTTGGAGTGTTT+AGG - chr7_3:29493300-29493319 Msa1100050:CDS 40.0%
TGACAAGAAGACTCCAAAAC+AGG + chr7_3:29493340-29493359 None:intergenic 40.0%
! TCTTCTTGTCACTTGTTTCG+CGG - chr7_3:29493349-29493368 Msa1100050:CDS 40.0%
!! TGCTGTTGACTTTACTTGCT+TGG + chr7_3:29491920-29491939 None:intergenic 40.0%
GCAAGTAAAGTCAACAGCAA+TGG - chr7_3:29491921-29491940 Msa1100050:three_prime_UTR 40.0%
ATGATTCTGATGACTGTACG+GGG + chr7_3:29491978-29491997 None:intergenic 40.0%
GATGATTCTGATGACTGTAC+GGG + chr7_3:29491979-29491998 None:intergenic 40.0%
GTGTGGACCTTGTAAAATGA+TGG - chr7_3:29492207-29492226 Msa1100050:three_prime_UTR 40.0%
TTGGTGGGAATTATAGGATG+TGG - chr7_3:29492904-29492923 Msa1100050:intron 40.0%
GTTGTTGAAGAATGGGAAAG+AGG - chr7_3:29492964-29492983 Msa1100050:intron 40.0%
!! GAATGGGAAAGAGGTTGATA+AGG - chr7_3:29492973-29492992 Msa1100050:intron 40.0%
TAAGGTTGTTGGAGCAAAGA+AGG - chr7_3:29492991-29493010 Msa1100050:intron 40.0%
!!! GCAACTGTTTTGGAGTGTTT+AGG - chr7_3:29493300-29493319 Msa1100050:CDS 40.0%
TGACAAGAAGACTCCAAAAC+AGG + chr7_3:29493340-29493359 None:intergenic 40.0%
! TCTTCTTGTCACTTGTTTCG+CGG - chr7_3:29493349-29493368 Msa1100050:CDS 40.0%
! TTTTTCTCCTCCTTAGTCGG+CGG - chr7_3:29491949-29491968 Msa1100050:three_prime_UTR 45.0%
AGATGAGTGGAAGGTCTTGA+CGG + chr7_3:29492013-29492032 None:intergenic 45.0%
! GATATGGGTTTTACGAGACG+AGG + chr7_3:29492075-29492094 None:intergenic 45.0%
GATTTCTCTGCTACATGGTG+TGG - chr7_3:29492190-29492209 Msa1100050:three_prime_UTR 45.0%
! GGAACCGATTCTTCAAGCTA+TGG - chr7_3:29492228-29492247 Msa1100050:three_prime_UTR 45.0%
AAACCCTCTATCCGAAGTGT+CGG + chr7_3:29492370-29492389 None:intergenic 45.0%
GGATGTGGCACAAGAGTTTA+AGG - chr7_3:29492919-29492938 Msa1100050:intron 45.0%
! TGAAACCCTCTGTCCTGTTT+TGG - chr7_3:29493324-29493343 Msa1100050:CDS 45.0%
AGACTCCAAAACAGGACAGA+GGG + chr7_3:29493332-29493351 None:intergenic 45.0%
AAGACTCCAAAACAGGACAG+AGG + chr7_3:29493333-29493352 None:intergenic 45.0%
! TTTTTCTCCTCCTTAGTCGG+CGG - chr7_3:29491949-29491968 Msa1100050:three_prime_UTR 45.0%
AGATGAGTGGAAGGTCTTGA+CGG + chr7_3:29492013-29492032 None:intergenic 45.0%
! GATATGGGTTTTACGAGACG+AGG + chr7_3:29492075-29492094 None:intergenic 45.0%
GATTTCTCTGCTACATGGTG+TGG - chr7_3:29492190-29492209 Msa1100050:three_prime_UTR 45.0%
! GGAACCGATTCTTCAAGCTA+TGG - chr7_3:29492228-29492247 Msa1100050:three_prime_UTR 45.0%
AAACCCTCTATCCGAAGTGT+CGG + chr7_3:29492370-29492389 None:intergenic 45.0%
GGATGTGGCACAAGAGTTTA+AGG - chr7_3:29492919-29492938 Msa1100050:intron 45.0%
! TGAAACCCTCTGTCCTGTTT+TGG - chr7_3:29493324-29493343 Msa1100050:CDS 45.0%
AGACTCCAAAACAGGACAGA+GGG + chr7_3:29493332-29493351 None:intergenic 45.0%
AAGACTCCAAAACAGGACAG+AGG + chr7_3:29493333-29493352 None:intergenic 45.0%
! GGCACAAGAGTTTAAGGTGC+AGG - chr7_3:29492925-29492944 Msa1100050:intron 50.0%
! GGCACAAGAGTTTAAGGTGC+AGG - chr7_3:29492925-29492944 Msa1100050:intron 50.0%
!! AGCACCGACACTTCGGATAG+AGG - chr7_3:29492363-29492382 Msa1100050:CDS 55.0%
! GCACCGACACTTCGGATAGA+GGG - chr7_3:29492364-29492383 Msa1100050:CDS 55.0%
!! AGCACCGACACTTCGGATAG+AGG - chr7_3:29492363-29492382 Msa1100050:CDS 55.0%
! GCACCGACACTTCGGATAGA+GGG - chr7_3:29492364-29492383 Msa1100050:CDS 55.0%
TTCTCCTCCTTAGTCGGCGG+TGG - chr7_3:29491952-29491971 Msa1100050:three_prime_UTR 60.0%
CCAGCGAGCAGATGAGTGGA+AGG + chr7_3:29492022-29492041 None:intergenic 60.0%
CCTTCCACTCATCTGCTCGC+TGG - chr7_3:29492019-29492038 Msa1100050:three_prime_UTR 60.0%
GTTGCCAGCGAGCAGATGAG+TGG + chr7_3:29492026-29492045 None:intergenic 60.0%
TTCTCCTCCTTAGTCGGCGG+TGG - chr7_3:29491952-29491971 Msa1100050:three_prime_UTR 60.0%
CCAGCGAGCAGATGAGTGGA+AGG + chr7_3:29492022-29492041 None:intergenic 60.0%
CCTTCCACTCATCTGCTCGC+TGG - chr7_3:29492019-29492038 Msa1100050:three_prime_UTR 60.0%
GTTGCCAGCGAGCAGATGAG+TGG + chr7_3:29492026-29492045 None:intergenic 60.0%
! TACGGGGCCACCGCCGACTA+AGG + chr7_3:29491962-29491981 None:intergenic 70.0%
! TACGGGGCCACCGCCGACTA+AGG + chr7_3:29491962-29491981 None:intergenic 70.0%
! GGGGCCACCGCCGACTAAGG+AGG + chr7_3:29491959-29491978 None:intergenic 75.0%
! GGGGCCACCGCCGACTAAGG+AGG + chr7_3:29491959-29491978 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 29491890 29493447 29491890 ID=Msa1100050;Name=Msa1100050
chr7_3 mRNA 29491890 29493447 29491890 ID=Msa1100050-mRNA-1;Parent=Msa1100050;Name=Msa1100050-mRNA-1;_AED=0.01;_eAED=0.01;_QI=50|1|1|1|1|1|3|396|131
chr7_3 exon 29491890 29492417 29491890 ID=Msa1100050-mRNA-1:exon:6275;Parent=Msa1100050-mRNA-1
chr7_3 exon 29493034 29493156 29493034 ID=Msa1100050-mRNA-1:exon:6274;Parent=Msa1100050-mRNA-1
chr7_3 exon 29493257 29493447 29493257 ID=Msa1100050-mRNA-1:exon:6273;Parent=Msa1100050-mRNA-1
chr7_3 five_prime_UTR 29493398 29493447 29493398 ID=Msa1100050-mRNA-1:five_prime_utr;Parent=Msa1100050-mRNA-1
chr7_3 CDS 29493257 29493397 29493257 ID=Msa1100050-mRNA-1:cds;Parent=Msa1100050-mRNA-1
chr7_3 CDS 29493034 29493156 29493034 ID=Msa1100050-mRNA-1:cds;Parent=Msa1100050-mRNA-1
chr7_3 CDS 29492286 29492417 29492286 ID=Msa1100050-mRNA-1:cds;Parent=Msa1100050-mRNA-1
chr7_3 three_prime_UTR 29491890 29492285 29491890 ID=Msa1100050-mRNA-1:three_prime_utr;Parent=Msa1100050-mRNA-1
Gene Sequence

>Msa1100050

ATGGGATCATTTTTCTCCTCCTTAGTCGGCGGTGGCCCCGTACAGTCATCAGAATCATCAGAGAGTTCTTCCGTCAAGACCTTCCACTCATCTGCTCGCTGGCAACTTCACTTCAACGAACTCAAAGATTCTCCTCGTCTCGTGGTGATTGATTTCTCTGCTACATGGTGTGGACCTTGTAAAATGATGGAACCGATTCTTCAAGCTATGGCTAATGAATTCACTGATGTTGAATTCATCAAAATCGATGTTGATGAATTATCGGATGTGGCACAAGAGTTTAAGGTGCAGGCTATGCCAACGTTTGTGTTGTTGAAGAATGGGAAAGAGGTTGATAAGGTTGTTGGAGCAAAGAAGGATGAACTTAAAAACAAGGTTCAAAAGCACAAAGCTTAG

Protein sequence

>Msa1100050

MGSFFSSLVGGGPVQSSESSESSSVKTFHSSARWQLHFNELKDSPRLVVIDFSATWCGPCKMMEPILQAMANEFTDVEFIKIDVDELSDVAQEFKVQAMPTFVLLKNGKEVDKVVGAKKDELKNKVQKHKA*