Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645240 | XP_003606745.2 | 97.048 | 847 | 25 | 0 | 1 | 847 | 1 | 847 | 0.0 | 1719 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645240 | G7JCI1 | 97.048 | 847 | 25 | 0 | 1 | 847 | 1 | 847 | 0.0 | 1719 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094990 | Msa0645240 | 0.801254 | 9.822116e-49 | -8.615850e-47 |
| Msa0603870 | Msa0645240 | 0.805018 | 1.634173e-49 | -8.615850e-47 |
| Msa0645240 | Msa1340310 | 0.959051 | 5.109064e-117 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645240 | MtrunA17_Chr4g0032781 | 97.048 | 847 | 25 | 0 | 1 | 847 | 1 | 847 | 0.0 | 1719 |
| Msa0645240 | MtrunA17_Chr4g0032831 | 84.634 | 846 | 128 | 1 | 1 | 846 | 1 | 844 | 0.0 | 1500 |
| Msa0645240 | MtrunA17_Chr4g0032821 | 78.463 | 859 | 169 | 3 | 5 | 847 | 4 | 862 | 0.0 | 1407 |
| Msa0645240 | MtrunA17_Chr4g0032881 | 82.474 | 97 | 17 | 0 | 750 | 846 | 23 | 119 | 4.78e-50 | 171 |
| Msa0645240 | MtrunA17_Chr4g0032871 | 76.596 | 47 | 11 | 0 | 191 | 237 | 1 | 47 | 3.43e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645240 | AT5G12950.1 | 64.100 | 844 | 276 | 12 | 22 | 846 | 25 | 860 | 0.0 | 1089 |
| Msa0645240 | AT5G12960.1 | 61.066 | 863 | 309 | 11 | 3 | 847 | 12 | 865 | 0.0 | 1064 |
Find 225 sgRNAs with CRISPR-Local
Find 405 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATCCATTTGACACTTTC+TGG | 0.104833 | 4_3:+49981205 | Msa0645240:CDS |
| AGCTCATTTAATTGGAAATA+TGG | 0.135321 | 4_3:+49981483 | Msa0645240:CDS |
| GGAAATCGGATCATTCTTTA+TGG | 0.145770 | 4_3:+49980548 | Msa0645240:intron |
| TGTGTTTATGTTTATGTTTA+TGG | 0.156872 | 4_3:+49977808 | Msa0645240:CDS |
| ATCCTTAGTCCTTACATTAT+TGG | 0.158835 | 4_3:+49977321 | Msa0645240:five_prime_UTR |
| GTATAGGAAAATTAAGAATT+TGG | 0.186644 | 4_3:+49978048 | Msa0645240:CDS |
| CTGTTAACTTTACTCAATTA+AGG | 0.194807 | 4_3:+49977476 | Msa0645240:five_prime_UTR |
| GGCTTTGATGTCCCAATTTC+CGG | 0.200674 | 4_3:-49982329 | None:intergenic |
| ACATATCAAGCTCATTTAAT+TGG | 0.209264 | 4_3:+49981475 | Msa0645240:CDS |
| ATATGCTTCCTTTAGGTATT+GGG | 0.214681 | 4_3:+49981151 | Msa0645240:CDS |
| ATCATTCCAGGAAGATTAAT+TGG | 0.217671 | 4_3:-49982577 | None:intergenic |
| TTAGTTGAGATATAAATTTC+TGG | 0.225631 | 4_3:+49977606 | Msa0645240:five_prime_UTR |
| ATATCTCAACTAAATTAAAT+TGG | 0.240773 | 4_3:-49977596 | None:intergenic |
| TAAACTTTAAGAGATTAATT+TGG | 0.240869 | 4_3:-49977533 | None:intergenic |
| CCGGTCACACCACCGGAAAT+TGG | 0.260920 | 4_3:+49982317 | Msa0645240:CDS |
| TTGAAAATATTCAACCTGTT+TGG | 0.271856 | 4_3:+49979204 | Msa0645240:CDS |
| ACCTTTAGACTTATCCTAAA+AGG | 0.276916 | 4_3:+49982526 | Msa0645240:CDS |
| TGAAAATATTCAACCTGTTT+GGG | 0.277164 | 4_3:+49979205 | Msa0645240:CDS |
| CTCCCTTGGCGGGCCTTCTT+CGG | 0.282929 | 4_3:+49982645 | Msa0645240:CDS |
| GCTTGAACTGATGCATATTC+AGG | 0.284821 | 4_3:-49982268 | None:intergenic |
| TCGTTTCCGGGAAAGGATTA+AGG | 0.286337 | 4_3:+49982830 | Msa0645240:CDS |
| ACGTTATTTCTGCAGAAAAC+TGG | 0.288118 | 4_3:+49981722 | Msa0645240:intron |
| CAAGCAGCAAGTTTCGTTTC+CGG | 0.293184 | 4_3:+49982817 | Msa0645240:CDS |
| TAAGAGGTTGGTCTGGTTCT+TGG | 0.293356 | 4_3:-49982609 | None:intergenic |
| TGTCCTCTGAGTTCGGTATT+AGG | 0.297824 | 4_3:-49978271 | None:intergenic |
| TATATGCTTCCTTTAGGTAT+TGG | 0.298978 | 4_3:+49981150 | Msa0645240:CDS |
| ATGATTTATATGCTTCCTTT+AGG | 0.300957 | 4_3:+49981144 | Msa0645240:CDS |
| TCACAGGTGATCCACTTTAT+AGG | 0.306193 | 4_3:+49980237 | Msa0645240:CDS |
| CTAGAACCAATTAATCTTCC+TGG | 0.308600 | 4_3:+49982571 | Msa0645240:CDS |
| AAGCAGCAAGTTTCGTTTCC+GGG | 0.315271 | 4_3:+49982818 | Msa0645240:CDS |
| TACCTTGTGAATGGTGTAAT+AGG | 0.317036 | 4_3:-49979231 | None:intergenic |
| TGTTTATTTCAACATTCTAT+TGG | 0.317181 | 4_3:+49982976 | Msa0645240:three_prime_UTR |
| AGGTTGTCGGCTATTCTCTT+TGG | 0.319281 | 4_3:-49980797 | None:intergenic |
| ATAGGTTGATTTGGAGCTTC+AGG | 0.320627 | 4_3:+49978197 | Msa0645240:CDS |
| ATGATTGGGCTTTAATGTAT+AGG | 0.322038 | 4_3:+49978032 | Msa0645240:CDS |
| TAGAGCCATTATTTAACTTC+AGG | 0.327323 | 4_3:+49982905 | Msa0645240:CDS |
| ATGGCTCTAAAAGAAAATTC+TGG | 0.332053 | 4_3:-49982891 | None:intergenic |
| TATAGGAAAATTAAGAATTT+GGG | 0.335217 | 4_3:+49978049 | Msa0645240:CDS |
| CTGTGACTTCATACCGCATT+TGG | 0.335761 | 4_3:-49980220 | None:intergenic |
| AGCTAAAACTGGACATAGTT+GGG | 0.338057 | 4_3:+49981182 | Msa0645240:CDS |
| AACTAGGTTGCTATTGTAAC+TGG | 0.344167 | 4_3:-49982395 | None:intergenic |
| GCTCATTTAATTGGAAATAT+GGG | 0.348205 | 4_3:+49981484 | Msa0645240:CDS |
| ATCAGAACAGAAGCCATAAA+AGG | 0.349305 | 4_3:+49982129 | Msa0645240:CDS |
| TACGGACCTTATCTTCTTGC+CGG | 0.352390 | 4_3:+49982298 | Msa0645240:CDS |
| ATTTGGGATCCAACAACAAT+TGG | 0.357335 | 4_3:-49980203 | None:intergenic |
| TGTGGCACAGCAGACTAATT+TGG | 0.363169 | 4_3:+49978150 | Msa0645240:CDS |
| ATCTGCATAAGTGACTTCTT+TGG | 0.370767 | 4_3:-49981058 | None:intergenic |
| CAGGCTATCATTCTTTGTGC+TGG | 0.370963 | 4_3:-49979081 | None:intergenic |
| CACAGGTGATCCACTTTATA+GGG | 0.372586 | 4_3:+49980238 | Msa0645240:CDS |
| CTTGGGCAGCTTTGCTTCCA+AGG | 0.376140 | 4_3:+49977984 | Msa0645240:CDS |
| GGACATCAGTCCGTGAGTTC+TGG | 0.378116 | 4_3:+49980607 | Msa0645240:CDS |
| GTATTGCCTTAATCCTTTCC+CGG | 0.380643 | 4_3:-49982836 | None:intergenic |
| CTTCTTTGGTCCATCTGAAC+AGG | 0.382755 | 4_3:-49981044 | None:intergenic |
| CAATCACTGAATGAGGAAAC+TGG | 0.384947 | 4_3:+49979466 | Msa0645240:CDS |
| GCGACATCAGTGCCAGGTTC+AGG | 0.388376 | 4_3:-49982493 | None:intergenic |
| CGGTCACACCACCGGAAATT+GGG | 0.391542 | 4_3:+49982318 | Msa0645240:CDS |
| ACAGTTTATTTCAACATTCA+AGG | 0.392877 | 4_3:+49982940 | Msa0645240:CDS |
| TATAGAGAAGATATAATAGA+AGG | 0.393350 | 4_3:-49977451 | None:intergenic |
| CAGAAGAAAACCAACATGAT+TGG | 0.394758 | 4_3:+49978017 | Msa0645240:CDS |
| TGAACTTTCGTCTACCATCT+TGG | 0.395997 | 4_3:+49981759 | Msa0645240:CDS |
| ATTGTTGTAGATTCCTCCCT+TGG | 0.397510 | 4_3:+49982631 | Msa0645240:CDS |
| AAAATGTCGGCTCTTGTTGC+CGG | 0.398839 | 4_3:+49979110 | Msa0645240:CDS |
| TAGATGTTGATAGGTTGATT+TGG | 0.399133 | 4_3:+49978188 | Msa0645240:CDS |
| TGGTGACTTACAATCATTCC+AGG | 0.404014 | 4_3:-49982589 | None:intergenic |
| TGCAACAGCTTTGCTAGAAC+CGG | 0.404572 | 4_3:-49982350 | None:intergenic |
| TTTAGGATTGCTTGCCGTAC+AGG | 0.408367 | 4_3:+49979773 | Msa0645240:CDS |
| CTCTGTTGTTCCAAGGTTGT+CGG | 0.409031 | 4_3:-49980810 | None:intergenic |
| TTTAATTCAAGTTTGTTCTC+TGG | 0.409074 | 4_3:+49977652 | Msa0645240:five_prime_UTR |
| AGATATAATAGAAGGTAGAA+AGG | 0.409773 | 4_3:-49977443 | None:intergenic |
| ACAGATCTTGGCCGGCCTGT+TGG | 0.410146 | 4_3:+49979327 | Msa0645240:intron |
| AACAAAATGTCCTCTGAGTT+CGG | 0.411412 | 4_3:-49978278 | None:intergenic |
| ACACATATCCCAATTGTTGT+TGG | 0.423041 | 4_3:+49980194 | Msa0645240:CDS |
| TTGTAGATTCCTCCCTTGGC+GGG | 0.425790 | 4_3:+49982635 | Msa0645240:CDS |
| AGCGATATGAGCTCTGGTTC+AGG | 0.427962 | 4_3:+49982751 | Msa0645240:CDS |
| CTTCAGTCTCTGTTGTTCCA+AGG | 0.428325 | 4_3:-49980817 | None:intergenic |
| TCATCCCTGAAGTTAAATAA+TGG | 0.430175 | 4_3:-49982910 | None:intergenic |
| TAGTTGAGATATAAATTTCT+GGG | 0.430452 | 4_3:+49977607 | Msa0645240:five_prime_UTR |
| TTCTGGTGCTGCTACGGAAC+CGG | 0.430538 | 4_3:+49981222 | Msa0645240:CDS |
| GATAATGATTTCAGGTTTCA+CGG | 0.431125 | 4_3:+49981019 | Msa0645240:intron |
| CCTTTAGCCACAAAACTGAT+AGG | 0.432441 | 4_3:-49982862 | None:intergenic |
| TGTGACTTCATACCGCATTT+GGG | 0.435092 | 4_3:-49980219 | None:intergenic |
| AAGCTAAAACTGGACATAGT+TGG | 0.435141 | 4_3:+49981181 | Msa0645240:CDS |
| GTGTAATAGGGAGCCCAAAC+AGG | 0.437125 | 4_3:-49979218 | None:intergenic |
| ACTTTATCTTTGCCCGCTCC+AGG | 0.438187 | 4_3:+49981821 | Msa0645240:CDS |
| TTGGATCAATATACTGTAGC+TGG | 0.439839 | 4_3:+49979346 | Msa0645240:CDS |
| ACCTTGTGAATGGTGTAATA+GGG | 0.442206 | 4_3:-49979230 | None:intergenic |
| AATTGAATCATTCTCAAAGC+TGG | 0.442887 | 4_3:+49981395 | Msa0645240:CDS |
| GATATAATAGAAGGTAGAAA+GGG | 0.444373 | 4_3:-49977442 | None:intergenic |
| GGGGTTTCGAAAGCTAAAAC+TGG | 0.448832 | 4_3:+49981171 | Msa0645240:CDS |
| CTATTGTAACTGGATGGAAT+TGG | 0.451167 | 4_3:-49982385 | None:intergenic |
| GTAAATGTCACTCGTAGGTA+AGG | 0.451881 | 4_3:-49981552 | None:intergenic |
| CCAATTTCCGGTGGTGTGAC+CGG | 0.453525 | 4_3:-49982317 | None:intergenic |
| GACACTTTCTGGTGCTGCTA+CGG | 0.454466 | 4_3:+49981216 | Msa0645240:CDS |
| AAAAGCATGGCTTGTCGAAA+AGG | 0.460007 | 4_3:-49979752 | None:intergenic |
| CATCCTCCATACGGTGTACC+AGG | 0.461140 | 4_3:-49978241 | None:intergenic |
| GCTGACGGCCGACGCGGTTG+TGG | 0.462353 | 4_3:+49983436 | Msa0645240:three_prime_UTR |
| AGAAGAAAACCAACATGATT+GGG | 0.463290 | 4_3:+49978018 | Msa0645240:CDS |
| TGATGATGTTAGATGTTGAT+AGG | 0.465990 | 4_3:+49978179 | Msa0645240:CDS |
| CGGAAACGAAACTTGCTGCT+TGG | 0.466133 | 4_3:-49982816 | None:intergenic |
| CGTTATTTCTGCAGAAAACT+GGG | 0.466638 | 4_3:+49981723 | Msa0645240:intron |
| GCAAGTTTCGTTTCCGGGAA+AGG | 0.466962 | 4_3:+49982823 | Msa0645240:CDS |
| GAGGAATCTACAACAATAAG+AGG | 0.468907 | 4_3:-49982625 | None:intergenic |
| CACCGACCGATGAATCTGCT+TGG | 0.469681 | 4_3:+49977966 | Msa0645240:CDS |
| ATCCTATGTCTGGTGGTGGC+AGG | 0.474922 | 4_3:+49983485 | Msa0645240:three_prime_UTR |
| TTCTTGACAAGCGGATAGAC+CGG | 0.475274 | 4_3:-49979129 | None:intergenic |
| CGACTCAGTCACATACGTTT+CGG | 0.479974 | 4_3:+49977879 | Msa0645240:CDS |
| GTTGTAGATTCCTCCCTTGG+CGG | 0.481385 | 4_3:+49982634 | Msa0645240:CDS |
| TTTGGGATCCAACAACAATT+GGG | 0.482174 | 4_3:-49980202 | None:intergenic |
| AAATAACTCACCCTATAAAG+TGG | 0.483711 | 4_3:-49980248 | None:intergenic |
| AGAGCCATTATTTAACTTCA+GGG | 0.487469 | 4_3:+49982906 | Msa0645240:CDS |
| TCTTCTGATAAGATCTTCCT+TGG | 0.488745 | 4_3:-49978001 | None:intergenic |
| GGATTCAAAGCATCTATTGT+TGG | 0.489543 | 4_3:+49979725 | Msa0645240:CDS |
| GGTGATCGCTATCCTATGTC+TGG | 0.491309 | 4_3:+49983475 | Msa0645240:three_prime_UTR |
| GCTTCTGTTCTGATGATAAG+AGG | 0.491841 | 4_3:-49982120 | None:intergenic |
| AATTTGGAGGTTCTAATTGA+AGG | 0.492292 | 4_3:-49977517 | None:intergenic |
| TATGCTTCCTTTAGGTATTG+GGG | 0.493468 | 4_3:+49981152 | Msa0645240:CDS |
| TCTTGAGGATGTGAGGCTGC+TGG | 0.496193 | 4_3:+49978111 | Msa0645240:CDS |
| ATTGATATTTGTTACCTGTA+CGG | 0.496674 | 4_3:-49979787 | None:intergenic |
| ACTTTAAGAGATTAATTTGG+AGG | 0.498751 | 4_3:-49977530 | None:intergenic |
| GATATGTGACCAATAATGTA+AGG | 0.498974 | 4_3:-49977330 | None:intergenic |
| AGTTGTTCCAGCTGCTTCAT+CGG | 0.499026 | 4_3:+49981527 | Msa0645240:CDS |
| CTACAGTATATTGATCCAAC+AGG | 0.499586 | 4_3:-49979342 | None:intergenic |
| TGAGATATAAATTTCTGGGC+TGG | 0.502981 | 4_3:+49977611 | Msa0645240:five_prime_UTR |
| TTCAGAATTCAATATCGCCT+TGG | 0.504238 | 4_3:-49981798 | None:intergenic |
| CACAACTTATAATATGTTGA+AGG | 0.508895 | 4_3:+49980847 | Msa0645240:CDS |
| ACTGAGTACACCATTCGTTA+AGG | 0.509378 | 4_3:-49981094 | None:intergenic |
| CAGCACCAGAAAGTGTCAAA+TGG | 0.510223 | 4_3:-49981210 | None:intergenic |
| CTAGCAAAGCTGTTGCAGAC+TGG | 0.510603 | 4_3:+49982356 | Msa0645240:CDS |
| GACCAATAATGTAAGGACTA+AGG | 0.512209 | 4_3:-49977323 | None:intergenic |
| CAACTTTGACAGATCTTGGC+CGG | 0.513374 | 4_3:+49979319 | Msa0645240:intron |
| ACCGACCGATGAATCTGCTT+GGG | 0.516084 | 4_3:+49977967 | Msa0645240:CDS |
| GGTGGCCAGGGAGCTGCTGA+CGG | 0.519501 | 4_3:+49983421 | Msa0645240:intron |
| CTGGTACACCGTATGGAGGA+TGG | 0.521019 | 4_3:+49978242 | Msa0645240:CDS |
| AATCTACAACAATAAGAGGT+TGG | 0.521360 | 4_3:-49982621 | None:intergenic |
| AAACCGAAGAAGGCCCGCCA+AGG | 0.521999 | 4_3:-49982648 | None:intergenic |
| CTTGTGGTACCGGGTTTGGA+TGG | 0.523740 | 4_3:+49982673 | Msa0645240:CDS |
| ATTCAAAGAGGAACAGATCC+TGG | 0.523997 | 4_3:+49981117 | Msa0645240:CDS |
| TGATGATAAGAGGCAATTGA+AGG | 0.524062 | 4_3:-49982110 | None:intergenic |
| TTTCACGGCACCTGTTCAGA+TGG | 0.524957 | 4_3:+49981034 | Msa0645240:CDS |
| TAAGGGTCCGATGAAGCAGC+TGG | 0.525370 | 4_3:-49981534 | None:intergenic |
| CTGGTTCAGGAGTTAAGCTC+AGG | 0.527444 | 4_3:+49982764 | Msa0645240:CDS |
| ACAACAATAAGAGGTTGGTC+TGG | 0.530198 | 4_3:-49982616 | None:intergenic |
| GACTCACGCTGATGGTGCCA+AGG | 0.531665 | 4_3:+49981781 | Msa0645240:CDS |
| ATCACGCGACAGTGGAGTGC+CGG | 0.532836 | 4_3:+49982075 | Msa0645240:CDS |
| GTGTGACCGGCAAGAAGATA+AGG | 0.534253 | 4_3:-49982304 | None:intergenic |
| GTGTATAGCGATATGAGCTC+TGG | 0.536493 | 4_3:+49982745 | Msa0645240:CDS |
| CGCTATCCTATGTCTGGTGG+TGG | 0.536818 | 4_3:+49983481 | Msa0645240:three_prime_UTR |
| CTTCTTGCCGGTCACACCAC+CGG | 0.538122 | 4_3:+49982310 | Msa0645240:CDS |
| ATTGAATCATTCTCAAAGCT+GGG | 0.541879 | 4_3:+49981396 | Msa0645240:CDS |
| ACTTCTTTCAGAAATCCTAC+AGG | 0.542555 | 4_3:-49978085 | None:intergenic |
| AAGAGAATAGCCGACAACCT+TGG | 0.544736 | 4_3:+49980800 | Msa0645240:CDS |
| CCGACTCCTGGTACACCGTA+TGG | 0.545762 | 4_3:+49978235 | Msa0645240:CDS |
| TGAGTGCATCAGCTCTAATG+TGG | 0.550383 | 4_3:+49979057 | Msa0645240:CDS |
| TGGTACACCGTATGGAGGAT+GGG | 0.551695 | 4_3:+49978243 | Msa0645240:CDS |
| ACATTAAAGCCCAATCATGT+TGG | 0.552104 | 4_3:-49978027 | None:intergenic |
| GGTGTGTTTAAGCCACCTGT+AGG | 0.554706 | 4_3:+49978070 | Msa0645240:CDS |
| TTCGAAACCCCAATACCTAA+AGG | 0.555523 | 4_3:-49981159 | None:intergenic |
| TGGAGCTTCAGGAAGACGGC+TGG | 0.556390 | 4_3:+49978208 | Msa0645240:CDS |
| TCTGAAAGAAGTTCCTCTTG+AGG | 0.557134 | 4_3:+49978096 | Msa0645240:CDS |
| CCTCTGATGAAAGACGTGTC+TGG | 0.560973 | 4_3:-49977119 | None:intergenic |
| TTGAAGGGTCAGCTTGTCAC+CGG | 0.561700 | 4_3:-49982094 | None:intergenic |
| ACACTATCAATCACTGAATG+AGG | 0.561789 | 4_3:+49979459 | Msa0645240:CDS |
| GGTTCCTCCCATCCTCCATA+CGG | 0.561878 | 4_3:-49978250 | None:intergenic |
| ACGGCTGGTTTACCGACTCC+TGG | 0.562227 | 4_3:+49978223 | Msa0645240:CDS |
| TGAAGAGCGACATCAGTGCC+AGG | 0.564631 | 4_3:-49982499 | None:intergenic |
| CGAAGAAGGCCCGCCAAGGG+AGG | 0.565407 | 4_3:-49982644 | None:intergenic |
| AGCTGCCCAAGCAGATTCAT+CGG | 0.572308 | 4_3:-49977972 | None:intergenic |
| TACAGACTCAGACCTGGAGC+GGG | 0.576888 | 4_3:-49981833 | None:intergenic |
| TCTTCTCACAGCTATGCGAC+TGG | 0.577040 | 4_3:+49980582 | Msa0645240:CDS |
| GATTAATATCATCTCGCGAA+AGG | 0.580775 | 4_3:-49977269 | None:intergenic |
| GAGGATGTGAGGCTGCTGGA+AGG | 0.582732 | 4_3:+49978115 | Msa0645240:CDS |
| TAGCCACAAAACTGATAGGA+TGG | 0.582916 | 4_3:-49982858 | None:intergenic |
| TATGAGCGTGCCTTAACGAA+TGG | 0.583068 | 4_3:+49981084 | Msa0645240:CDS |
| GGAAATTGGGACATCAAAGC+CGG | 0.586825 | 4_3:+49982331 | Msa0645240:CDS |
| AGGTTGCTATTGTAACTGGA+TGG | 0.587968 | 4_3:-49982391 | None:intergenic |
| GCCCAAGCAGATTCATCGGT+CGG | 0.593496 | 4_3:-49977968 | None:intergenic |
| CCATCTTGGACTCACGCTGA+TGG | 0.593659 | 4_3:+49981773 | Msa0645240:CDS |
| GATTTGGAGCTTCAGGAAGA+CGG | 0.595474 | 4_3:+49978204 | Msa0645240:CDS |
| GAGTACCTCACTAGGTGAGA+AGG | 0.599416 | 4_3:-49981574 | None:intergenic |
| TCAGTTCAAGCAATTCTCTA+CGG | 0.603741 | 4_3:+49982280 | Msa0645240:CDS |
| CCATCAGCGTGAGTCCAAGA+TGG | 0.605522 | 4_3:-49981773 | None:intergenic |
| AGCAGCCTCACATCCTCAAG+AGG | 0.607268 | 4_3:-49978109 | None:intergenic |
| GCTAAAACTGGACATAGTTG+GGG | 0.607890 | 4_3:+49981183 | Msa0645240:CDS |
| TTACAAATTATATAGTGTAA+CGG | 0.608043 | 4_3:+49979507 | Msa0645240:CDS |
| ATACAGACTCAGACCTGGAG+CGG | 0.609148 | 4_3:-49981834 | None:intergenic |
| AAGTTCCTCTTGAGGATGTG+AGG | 0.609827 | 4_3:+49978104 | Msa0645240:CDS |
| TCTTTCAGAAATCCTACAGG+TGG | 0.610234 | 4_3:-49978082 | None:intergenic |
| TCTCACAGCTATGCGACTGG+AGG | 0.614490 | 4_3:+49980585 | Msa0645240:CDS |
| AGAAGGTAAATGTCACTCGT+AGG | 0.615292 | 4_3:-49981557 | None:intergenic |
| AACCGAAGAAGGCCCGCCAA+GGG | 0.616024 | 4_3:-49982647 | None:intergenic |
| GATGATAAGAGGCAATTGAA+GGG | 0.617420 | 4_3:-49982109 | None:intergenic |
| AGCATATAAATCATCACACC+AGG | 0.618298 | 4_3:-49981135 | None:intergenic |
| TGTGGTCAGCAGCTGTGTGG+TGG | 0.619656 | 4_3:+49983454 | Msa0645240:three_prime_UTR |
| GGAAGGTTCGATTCACGCTG+TGG | 0.620546 | 4_3:+49978132 | Msa0645240:CDS |
| TAAATGTCACTCGTAGGTAA+GGG | 0.624192 | 4_3:-49981551 | None:intergenic |
| CTCCTGCCACCACCAGACAT+AGG | 0.626096 | 4_3:-49983487 | None:intergenic |
| CATCTTAATACCAGAACTCA+CGG | 0.626122 | 4_3:-49980617 | None:intergenic |
| GGAGCTGCTGACGGCCGACG+CGG | 0.626758 | 4_3:+49983430 | Msa0645240:three_prime_UTR |
| ATTTACCTTCTCACCTAGTG+AGG | 0.630654 | 4_3:+49981569 | Msa0645240:CDS |
| AATGCAATGAGTACCTCACT+AGG | 0.632196 | 4_3:-49981582 | None:intergenic |
| CACAAAGAATGATAGCCTGA+AGG | 0.636801 | 4_3:+49979085 | Msa0645240:CDS |
| CCAGACACGTCTTTCATCAG+AGG | 0.639396 | 4_3:+49977119 | Msa0645240:five_prime_UTR |
| AGTATATTGATCCAACAGGC+CGG | 0.642469 | 4_3:-49979338 | None:intergenic |
| TTTGATGTCCCAATTTCCGG+TGG | 0.643405 | 4_3:-49982326 | None:intergenic |
| CAAATGCGGTATGAAGTCAC+AGG | 0.645340 | 4_3:+49980221 | Msa0645240:CDS |
| GAGTGCATCAGCTCTAATGT+GGG | 0.646670 | 4_3:+49979058 | Msa0645240:CDS |
| GATCGCTATCCTATGTCTGG+TGG | 0.647033 | 4_3:+49983478 | Msa0645240:three_prime_UTR |
| TCGATATAACATTCACCACT+CGG | 0.652176 | 4_3:-49979420 | None:intergenic |
| CTCACAGCTATGCGACTGGA+GGG | 0.653289 | 4_3:+49980586 | Msa0645240:CDS |
| TTGCATCAAAGAATGAGACA+TGG | 0.656551 | 4_3:+49977912 | Msa0645240:CDS |
| CCATACGGTGTACCAGGAGT+CGG | 0.658192 | 4_3:-49978235 | None:intergenic |
| TTGTTGTTGGATCCCAAATG+CGG | 0.660110 | 4_3:+49980207 | Msa0645240:CDS |
| GCTGCTGACCACAACCGCGT+CGG | 0.661869 | 4_3:-49983444 | None:intergenic |
| TACTGAATGATGTATAGACT+AGG | 0.668553 | 4_3:-49981453 | None:intergenic |
| ACTCCTGGTACACCGTATGG+AGG | 0.671069 | 4_3:+49978238 | Msa0645240:CDS |
| GAACTGATGCATATTCAGGT+CGG | 0.673754 | 4_3:-49982264 | None:intergenic |
| TAGCCTGAAGGAGAAAATGT+CGG | 0.674437 | 4_3:+49979097 | Msa0645240:CDS |
| GGTGTACTCAGTATTCAAAG+AGG | 0.683770 | 4_3:+49981105 | Msa0645240:CDS |
| TCCCTATTACACCATTCACA+AGG | 0.687838 | 4_3:+49979229 | Msa0645240:CDS |
| GAACCTAATACCGAACTCAG+AGG | 0.704808 | 4_3:+49978268 | Msa0645240:CDS |
| GGTTGTGGTCAGCAGCTGTG+TGG | 0.713684 | 4_3:+49983451 | Msa0645240:three_prime_UTR |
| CGAAACGTATGTGACTGAGT+CGG | 0.721173 | 4_3:-49977878 | None:intergenic |
| TACACCGTATGGAGGATGGG+AGG | 0.724621 | 4_3:+49978246 | Msa0645240:CDS |
| TTTATGGCACTTATGCTGCG+TGG | 0.732989 | 4_3:+49977824 | Msa0645240:CDS |
| TCACTGAATGAGGAAACTGG+AGG | 0.742577 | 4_3:+49979469 | Msa0645240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAAAAAAAAAAAAAAA+AGG | + | chr4_3:49983056-49983075 | Msa0645240:intron | 0.0% |
| !!! | ATATTTTTTTTCTTCTTAAA+AGG | + | chr4_3:49980680-49980699 | Msa0645240:intron | 10.0% |
| !!! | TAAACTTTAAGAGATTAATT+TGG | - | chr4_3:49977536-49977555 | None:intergenic | 15.0% |
| !! | ATATCTCAACTAAATTAAAT+TGG | - | chr4_3:49977599-49977618 | None:intergenic | 15.0% |
| !! | TATAGGAAAATTAAGAATTT+GGG | + | chr4_3:49978049-49978068 | Msa0645240:CDS | 15.0% |
| !!! | TTAAAAGTGTTGTAAATAAA+AGG | - | chr4_3:49978582-49978601 | None:intergenic | 15.0% |
| !! | TTACAAATTATATAGTGTAA+CGG | + | chr4_3:49979507-49979526 | Msa0645240:CDS | 15.0% |
| !! | TTTATAAAATCTATCAACTA+TGG | - | chr4_3:49979613-49979632 | None:intergenic | 15.0% |
| !! | GCTATTATAATTTATAAATG+CGG | - | chr4_3:49979913-49979932 | None:intergenic | 15.0% |
| !!! | TGAAATTTTTTTTTTCATGT+AGG | + | chr4_3:49980142-49980161 | Msa0645240:intron | 15.0% |
| !! | AAGAACAAATATTAGAAAAT+TGG | - | chr4_3:49980512-49980531 | None:intergenic | 15.0% |
| !! | GTATAAATTTATAATCTCAA+AGG | - | chr4_3:49981658-49981677 | None:intergenic | 15.0% |
| !! | TGAAATAAACAATATATGTA+AGG | + | chr4_3:49983001-49983020 | Msa0645240:intron | 15.0% |
| !!! | ATTTTGTACAGAATTTTTAT+TGG | - | chr4_3:49983225-49983244 | None:intergenic | 15.0% |
| !! | AAAAAATTAATATAGACTCA+TGG | - | chr4_3:49983297-49983316 | None:intergenic | 15.0% |
| !! | TATTTATTAATAATTGGAAG+TGG | + | chr4_3:49983397-49983416 | Msa0645240:intron | 15.0% |
| !! | TATAGAGAAGATATAATAGA+AGG | - | chr4_3:49977454-49977473 | None:intergenic | 20.0% |
| !! | TTAGTTGAGATATAAATTTC+TGG | + | chr4_3:49977606-49977625 | Msa0645240:five_prime_UTR | 20.0% |
| !! | TAGTTGAGATATAAATTTCT+GGG | + | chr4_3:49977607-49977626 | Msa0645240:five_prime_UTR | 20.0% |
| !!! | ATCTATGCTGTTTTATTTTT+TGG | + | chr4_3:49977688-49977707 | Msa0645240:intron | 20.0% |
| !! | TGTGTTTATGTTTATGTTTA+TGG | + | chr4_3:49977808-49977827 | Msa0645240:CDS | 20.0% |
| !! | GTATAGGAAAATTAAGAATT+TGG | + | chr4_3:49978048-49978067 | Msa0645240:CDS | 20.0% |
| !!! | AATGTTCTTTATTTGTATCA+AGG | + | chr4_3:49978332-49978351 | Msa0645240:intron | 20.0% |
| !!! | TTTAGTTTTCTTAGTTGAAA+GGG | + | chr4_3:49978357-49978376 | Msa0645240:intron | 20.0% |
| !! | CACATTGTCAAAAATAAAAA+AGG | - | chr4_3:49979025-49979044 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTGACAATGTGA+AGG | + | chr4_3:49979026-49979045 | Msa0645240:intron | 20.0% |
| !!! | TTTATTTTTGACAATGTGAA+GGG | + | chr4_3:49979027-49979046 | Msa0645240:intron | 20.0% |
| !! | ATCAAAATCACACAATAATA+AGG | - | chr4_3:49979295-49979314 | None:intergenic | 20.0% |
| !!! | AGAGGAAACTTATTTTATAA+AGG | - | chr4_3:49980060-49980079 | None:intergenic | 20.0% |
| !! | ACTAAATAATATTCAAGTAG+AGG | - | chr4_3:49980078-49980097 | None:intergenic | 20.0% |
| !!! | AAAGTTTACTTGCTATTTAT+TGG | + | chr4_3:49980320-49980339 | Msa0645240:intron | 20.0% |
| !! | AATGTCTGTAAGAATTAATA+GGG | - | chr4_3:49980413-49980432 | None:intergenic | 20.0% |
| !! | AGTTATAATTGTTTGTCATT+CGG | - | chr4_3:49980471-49980490 | None:intergenic | 20.0% |
| !!! | TAATATTTGTTCTTGTGTTT+TGG | + | chr4_3:49980518-49980537 | Msa0645240:intron | 20.0% |
| !! | AAGAAGAAAAAAAATATCCA+TGG | - | chr4_3:49980677-49980696 | None:intergenic | 20.0% |
| !!! | TTGCTTTATTTTTAGATACT+CGG | + | chr4_3:49980723-49980742 | Msa0645240:intron | 20.0% |
| !!! | ATATTTGTGTATTTTATAGC+AGG | + | chr4_3:49981987-49982006 | Msa0645240:intron | 20.0% |
| !! | TGTTTATTTCAACATTCTAT+TGG | + | chr4_3:49982976-49982995 | Msa0645240:three_prime_UTR | 20.0% |
| !! | TTTGATTATTTGAACTTTGT+AGG | - | chr4_3:49983031-49983050 | None:intergenic | 20.0% |
| !! | ATTGAAAATATGATAGGATT+TGG | - | chr4_3:49983254-49983273 | None:intergenic | 20.0% |
| !! | TCATCAATTGAAAATATGAT+AGG | - | chr4_3:49983260-49983279 | None:intergenic | 20.0% |
| ! | ATCTCTTTCGTCAAAAAAAA+AGG | - | chr4_3:49977294-49977313 | None:intergenic | 25.0% |
| ! | GATATAATAGAAGGTAGAAA+GGG | - | chr4_3:49977445-49977464 | None:intergenic | 25.0% |
| ! | AGATATAATAGAAGGTAGAA+AGG | - | chr4_3:49977446-49977465 | None:intergenic | 25.0% |
| ! | CTGTTAACTTTACTCAATTA+AGG | + | chr4_3:49977476-49977495 | Msa0645240:five_prime_UTR | 25.0% |
| !! | ACTTTAAGAGATTAATTTGG+AGG | - | chr4_3:49977533-49977552 | None:intergenic | 25.0% |
| !! | TTTAATTCAAGTTTGTTCTC+TGG | + | chr4_3:49977652-49977671 | Msa0645240:five_prime_UTR | 25.0% |
| ! | GCTTAATGACTTATAGATTA+AGG | + | chr4_3:49977721-49977740 | Msa0645240:intron | 25.0% |
| !! | TGAAATTTTCAGAAAGATGA+AGG | + | chr4_3:49977781-49977800 | Msa0645240:intron | 25.0% |
| !!! | CTTTAGTTTTCTTAGTTGAA+AGG | + | chr4_3:49978356-49978375 | Msa0645240:intron | 25.0% |
| ! | CTAATTACTACACATAAAAG+TGG | - | chr4_3:49978645-49978664 | None:intergenic | 25.0% |
| ! | AGGTAGCAAAACATAAAAAA+TGG | - | chr4_3:49978732-49978751 | None:intergenic | 25.0% |
| !! | AACTTTACTTAGTTTGAAGT+TGG | + | chr4_3:49978855-49978874 | Msa0645240:intron | 25.0% |
| ! | AGAGATATTTCAGAAGTTAT+GGG | - | chr4_3:49978881-49978900 | None:intergenic | 25.0% |
| ! | TTGAAAATATTCAACCTGTT+TGG | + | chr4_3:49979204-49979223 | Msa0645240:CDS | 25.0% |
| ! | TGAAAATATTCAACCTGTTT+GGG | + | chr4_3:49979205-49979224 | Msa0645240:CDS | 25.0% |
| !!! | GCATAATCAAAATCTAGTTT+TGG | - | chr4_3:49979260-49979279 | None:intergenic | 25.0% |
| ! | AAATTATATAGTGTAACGGT+AGG | + | chr4_3:49979511-49979530 | Msa0645240:intron | 25.0% |
| ! | TGTAAATTACAGCAATAACT+AGG | - | chr4_3:49979666-49979685 | None:intergenic | 25.0% |
| ! | ATCCTAAAGTAAATCTTTCA+TGG | + | chr4_3:49979686-49979705 | Msa0645240:intron | 25.0% |
| ! | TACCATGAAAGATTTACTTT+AGG | - | chr4_3:49979691-49979710 | None:intergenic | 25.0% |
| !! | ATTGATATTTGTTACCTGTA+CGG | - | chr4_3:49979790-49979809 | None:intergenic | 25.0% |
| ! | TAATTCAATGTAATCCACAT+TGG | + | chr4_3:49979826-49979845 | Msa0645240:intron | 25.0% |
| !!! | GGAAACTTATTTTATAAAGG+AGG | - | chr4_3:49980057-49980076 | None:intergenic | 25.0% |
| ! | ATTGTATTTGATGTTATGAC+TGG | + | chr4_3:49980104-49980123 | Msa0645240:intron | 25.0% |
| !!! | GTTTTAATCGTAATGTTTAG+TGG | + | chr4_3:49980356-49980375 | Msa0645240:intron | 25.0% |
| ! | ATGTCTGTAAGAATTAATAG+GGG | - | chr4_3:49980412-49980431 | None:intergenic | 25.0% |
| ! | GAATGTCTGTAAGAATTAAT+AGG | - | chr4_3:49980414-49980433 | None:intergenic | 25.0% |
| ! | AAATTGGAAATCATAGCATA+TGG | - | chr4_3:49980496-49980515 | None:intergenic | 25.0% |
| ! | CACAACTTATAATATGTTGA+AGG | + | chr4_3:49980847-49980866 | Msa0645240:CDS | 25.0% |
| ! | ATGATTTATATGCTTCCTTT+AGG | + | chr4_3:49981144-49981163 | Msa0645240:CDS | 25.0% |
| !! | ACTCGATGATTTTATTCAAT+AGG | - | chr4_3:49981318-49981337 | None:intergenic | 25.0% |
| !!! | AGATTCTATCTATTTTGAAG+AGG | + | chr4_3:49981419-49981438 | Msa0645240:CDS | 25.0% |
| ! | ACATATCAAGCTCATTTAAT+TGG | + | chr4_3:49981475-49981494 | Msa0645240:CDS | 25.0% |
| ! | AGCTCATTTAATTGGAAATA+TGG | + | chr4_3:49981483-49981502 | Msa0645240:CDS | 25.0% |
| ! | GCTCATTTAATTGGAAATAT+GGG | + | chr4_3:49981484-49981503 | Msa0645240:CDS | 25.0% |
| ! | TATCTTCTAATGATAGGTAT+TGG | + | chr4_3:49981631-49981650 | Msa0645240:intron | 25.0% |
| ! | TTGCAGAAGAAAAATATAGA+GGG | - | chr4_3:49981686-49981705 | None:intergenic | 25.0% |
| !! | ATTTTTGCATTGTAAGTGAT+TGG | - | chr4_3:49982471-49982490 | None:intergenic | 25.0% |
| ! | ACAGTTTATTTCAACATTCA+AGG | + | chr4_3:49982940-49982959 | Msa0645240:CDS | 25.0% |
| ! | TAAGTGCTCTAATCAAATTT+AGG | + | chr4_3:49983119-49983138 | Msa0645240:intron | 25.0% |
| ! | AAGTGCTCTAATCAAATTTA+GGG | + | chr4_3:49983120-49983139 | Msa0645240:intron | 25.0% |
| !!! | GATTTGAGTTTTGATTGTAA+TGG | + | chr4_3:49983166-49983185 | Msa0645240:intron | 25.0% |
| !! | TGTAAGTGAATTGTTTTCAT+TGG | - | chr4_3:49983193-49983212 | None:intergenic | 25.0% |
| ! | TTAATATAGACTCATGGATT+TGG | - | chr4_3:49983291-49983310 | None:intergenic | 25.0% |
| ! | TTATTAATAATTGGAAGTGG+TGG | + | chr4_3:49983400-49983419 | Msa0645240:intron | 25.0% |
| !!! | ACGTTTTTTATCAGAAGTGT+CGG | + | chr4_3:49977215-49977234 | Msa0645240:five_prime_UTR | 30.0% |
| ATCCTTAGTCCTTACATTAT+TGG | + | chr4_3:49977321-49977340 | Msa0645240:five_prime_UTR | 30.0% | |
| GATATGTGACCAATAATGTA+AGG | - | chr4_3:49977333-49977352 | None:intergenic | 30.0% | |
| ! | AATTTGGAGGTTCTAATTGA+AGG | - | chr4_3:49977520-49977539 | None:intergenic | 30.0% |
| AGAAGAAAACCAACATGATT+GGG | + | chr4_3:49978018-49978037 | Msa0645240:CDS | 30.0% | |
| ! | ATGATTGGGCTTTAATGTAT+AGG | + | chr4_3:49978032-49978051 | Msa0645240:CDS | 30.0% |
| ! | TGATGATGTTAGATGTTGAT+AGG | + | chr4_3:49978179-49978198 | Msa0645240:CDS | 30.0% |
| !! | TAGATGTTGATAGGTTGATT+TGG | + | chr4_3:49978188-49978207 | Msa0645240:CDS | 30.0% |
| AAAGAATCGCAGTAAAATAC+AGG | + | chr4_3:49978482-49978501 | Msa0645240:intron | 30.0% | |
| ATACAACACAACAATGATTG+AGG | - | chr4_3:49978508-49978527 | None:intergenic | 30.0% | |
| GAGAGATATTTCAGAAGTTA+TGG | - | chr4_3:49978882-49978901 | None:intergenic | 30.0% | |
| !!! | TCCAATTTTTTCTTGACAAG+CGG | - | chr4_3:49979141-49979160 | None:intergenic | 30.0% |
| TGTCAAGAAAAAATTGGAAC+AGG | + | chr4_3:49979143-49979162 | Msa0645240:CDS | 30.0% | |
| TCAAATCGATCAAAAAACTC+TGG | - | chr4_3:49979188-49979207 | None:intergenic | 30.0% | |
| !! | TTTTGGTTATACCTTGTGAA+TGG | - | chr4_3:49979243-49979262 | None:intergenic | 30.0% |
| ! | TTTGATTATGCATGTGCTTT+TGG | + | chr4_3:49979269-49979288 | Msa0645240:intron | 30.0% |
| TATTCAACTTTGACAGATCT+TGG | + | chr4_3:49979315-49979334 | Msa0645240:intron | 30.0% | |
| CAATGATGTTCTTTACTTGT+TGG | + | chr4_3:49979547-49979566 | Msa0645240:intron | 30.0% | |
| CATTCAAAGCTAGCATAATA+TGG | + | chr4_3:49979638-49979657 | Msa0645240:intron | 30.0% | |
| TTTCATGGTATACTATATGC+AGG | + | chr4_3:49979701-49979720 | Msa0645240:intron | 30.0% | |
| TTCATGGTATACTATATGCA+GGG | + | chr4_3:49979702-49979721 | Msa0645240:intron | 30.0% | |
| CATAAAGTTGAAGCAGAAAT+TGG | - | chr4_3:49979990-49980009 | None:intergenic | 30.0% | |
| AAATAACTCACCCTATAAAG+TGG | - | chr4_3:49980251-49980270 | None:intergenic | 30.0% | |
| ATGTTTAGTGGTATCATTTG+AGG | + | chr4_3:49980368-49980387 | Msa0645240:intron | 30.0% | |
| TGCACAAAAATTGAAGTGAA+GGG | - | chr4_3:49980769-49980788 | None:intergenic | 30.0% | |
| CTAATCGAATTAAGAGTGAT+TGG | - | chr4_3:49980878-49980897 | None:intergenic | 30.0% | |
| !! | TACACATTTTTAACTCTCCT+AGG | - | chr4_3:49980914-49980933 | None:intergenic | 30.0% |
| ! | CTAAGAATCATAACTGACTT+AGG | - | chr4_3:49980969-49980988 | None:intergenic | 30.0% |
| TGTTGCAAGATAATGATTTC+AGG | + | chr4_3:49981011-49981030 | Msa0645240:intron | 30.0% | |
| !! | GATAATGATTTCAGGTTTCA+CGG | + | chr4_3:49981019-49981038 | Msa0645240:intron | 30.0% |
| TATATGCTTCCTTTAGGTAT+TGG | + | chr4_3:49981150-49981169 | Msa0645240:CDS | 30.0% | |
| ATATGCTTCCTTTAGGTATT+GGG | + | chr4_3:49981151-49981170 | Msa0645240:CDS | 30.0% | |
| AACCTAAAACAAATACCTAC+CGG | - | chr4_3:49981244-49981263 | None:intergenic | 30.0% | |
| AGGTGTACATAATCTTGAAA+GGG | - | chr4_3:49981298-49981317 | None:intergenic | 30.0% | |
| TAGGTGTACATAATCTTGAA+AGG | - | chr4_3:49981299-49981318 | None:intergenic | 30.0% | |
| AATTGAATCATTCTCAAAGC+TGG | + | chr4_3:49981395-49981414 | Msa0645240:CDS | 30.0% | |
| ATTGAATCATTCTCAAAGCT+GGG | + | chr4_3:49981396-49981415 | Msa0645240:CDS | 30.0% | |
| !! | TCTATCTATTTTGAAGAGGA+AGG | + | chr4_3:49981423-49981442 | Msa0645240:CDS | 30.0% |
| !! | CTATCTATTTTGAAGAGGAA+GGG | + | chr4_3:49981424-49981443 | Msa0645240:CDS | 30.0% |
| TACTGAATGATGTATAGACT+AGG | - | chr4_3:49981456-49981475 | None:intergenic | 30.0% | |
| ! | GTACTCATTGCATTTTCTTT+TGG | + | chr4_3:49981591-49981610 | Msa0645240:intron | 30.0% |
| ACCACATATCTTCTAATGAT+AGG | + | chr4_3:49981625-49981644 | Msa0645240:intron | 30.0% | |
| ACCTATCATTAGAAGATATG+TGG | - | chr4_3:49981629-49981648 | None:intergenic | 30.0% | |
| GTTGCAGAAGAAAAATATAG+AGG | - | chr4_3:49981687-49981706 | None:intergenic | 30.0% | |
| TGCAGAAATAACGTTTAGAA+AGG | - | chr4_3:49981716-49981735 | None:intergenic | 30.0% | |
| TAATCGCCTAAAAACTAAGA+CGG | + | chr4_3:49981894-49981913 | Msa0645240:intron | 30.0% | |
| !! | TCTTTTCCGTCTTAGTTTTT+AGG | - | chr4_3:49981903-49981922 | None:intergenic | 30.0% |
| ! | TTAGTCCATTCCTTTAAGTT+AGG | + | chr4_3:49981931-49981950 | Msa0645240:intron | 30.0% |
| TTTGTCCTAACTTAAAGGAA+TGG | - | chr4_3:49981939-49981958 | None:intergenic | 30.0% | |
| !! | GTGTTTTTGTCCTAACTTAA+AGG | - | chr4_3:49981944-49981963 | None:intergenic | 30.0% |
| TATTTACTGTCTTGATCTCT+AGG | + | chr4_3:49982039-49982058 | Msa0645240:intron | 30.0% | |
| ATTTACTGTCTTGATCTCTA+GGG | + | chr4_3:49982040-49982059 | Msa0645240:intron | 30.0% | |
| ! | AGTCTTGTGAAAAAGAAACT+AGG | - | chr4_3:49982414-49982433 | None:intergenic | 30.0% |
| ACCTTTAGACTTATCCTAAA+AGG | + | chr4_3:49982526-49982545 | Msa0645240:CDS | 30.0% | |
| !!! | ACCTTTTAGGATAAGTCTAA+AGG | - | chr4_3:49982530-49982549 | None:intergenic | 30.0% |
| ATCATTCCAGGAAGATTAAT+TGG | - | chr4_3:49982580-49982599 | None:intergenic | 30.0% | |
| AATCTACAACAATAAGAGGT+TGG | - | chr4_3:49982624-49982643 | None:intergenic | 30.0% | |
| !! | ATGGCTCTAAAAGAAAATTC+TGG | - | chr4_3:49982894-49982913 | None:intergenic | 30.0% |
| ! | TAGAGCCATTATTTAACTTC+AGG | + | chr4_3:49982905-49982924 | Msa0645240:CDS | 30.0% |
| ! | AGAGCCATTATTTAACTTCA+GGG | + | chr4_3:49982906-49982925 | Msa0645240:CDS | 30.0% |
| TCATCCCTGAAGTTAAATAA+TGG | - | chr4_3:49982913-49982932 | None:intergenic | 30.0% | |
| GAACAAAAAAACAAGTCCAC+TGG | + | chr4_3:49977190-49977209 | Msa0645240:five_prime_UTR | 35.0% | |
| GATTAATATCATCTCGCGAA+AGG | - | chr4_3:49977272-49977291 | None:intergenic | 35.0% | |
| GACCAATAATGTAAGGACTA+AGG | - | chr4_3:49977326-49977345 | None:intergenic | 35.0% | |
| ! | TGAGATATAAATTTCTGGGC+TGG | + | chr4_3:49977611-49977630 | Msa0645240:five_prime_UTR | 35.0% |
| TTGCATCAAAGAATGAGACA+TGG | + | chr4_3:49977912-49977931 | Msa0645240:CDS | 35.0% | |
| TCTTCTGATAAGATCTTCCT+TGG | - | chr4_3:49978004-49978023 | None:intergenic | 35.0% | |
| CAGAAGAAAACCAACATGAT+TGG | + | chr4_3:49978017-49978036 | Msa0645240:CDS | 35.0% | |
| ACATTAAAGCCCAATCATGT+TGG | - | chr4_3:49978030-49978049 | None:intergenic | 35.0% | |
| ACTTCTTTCAGAAATCCTAC+AGG | - | chr4_3:49978088-49978107 | None:intergenic | 35.0% | |
| AACAAAATGTCCTCTGAGTT+CGG | - | chr4_3:49978281-49978300 | None:intergenic | 35.0% | |
| AAGGTTCACAACCATGATTT+GGG | - | chr4_3:49978563-49978582 | None:intergenic | 35.0% | |
| AAAGGTTCACAACCATGATT+TGG | - | chr4_3:49978564-49978583 | None:intergenic | 35.0% | |
| ! | AACCAATGTTCTCAAGCTTT+TGG | + | chr4_3:49978770-49978789 | Msa0645240:intron | 35.0% |
| TTCCAAAAGCTTGAGAACAT+TGG | - | chr4_3:49978775-49978794 | None:intergenic | 35.0% | |
| TCCGCTTGTCAAGAAAAAAT+TGG | + | chr4_3:49979137-49979156 | Msa0645240:CDS | 35.0% | |
| AATCGATCAAAAAACTCTGG+CGG | - | chr4_3:49979185-49979204 | None:intergenic | 35.0% | |
| ACCTTGTGAATGGTGTAATA+GGG | - | chr4_3:49979233-49979252 | None:intergenic | 35.0% | |
| TACCTTGTGAATGGTGTAAT+AGG | - | chr4_3:49979234-49979253 | None:intergenic | 35.0% | |
| CTACAGTATATTGATCCAAC+AGG | - | chr4_3:49979345-49979364 | None:intergenic | 35.0% | |
| TTGGATCAATATACTGTAGC+TGG | + | chr4_3:49979346-49979365 | Msa0645240:CDS | 35.0% | |
| !!! | TCAGCATTTTTAGAGCTTGA+GGG | - | chr4_3:49979375-49979394 | None:intergenic | 35.0% |
| !! | AAGCTCTAAAAATGCTGACA+TGG | + | chr4_3:49979377-49979396 | Msa0645240:CDS | 35.0% |
| TCTAAAAATGCTGACATGGA+TGG | + | chr4_3:49979381-49979400 | Msa0645240:CDS | 35.0% | |
| TCGATATAACATTCACCACT+CGG | - | chr4_3:49979423-49979442 | None:intergenic | 35.0% | |
| ACACTATCAATCACTGAATG+AGG | + | chr4_3:49979459-49979478 | Msa0645240:CDS | 35.0% | |
| TCATGGTATACTATATGCAG+GGG | + | chr4_3:49979703-49979722 | Msa0645240:intron | 35.0% | |
| ! | GGATTCAAAGCATCTATTGT+TGG | + | chr4_3:49979725-49979744 | Msa0645240:CDS | 35.0% |
| GAAAACAGTTTAAGCCAATG+TGG | - | chr4_3:49979843-49979862 | None:intergenic | 35.0% | |
| ! | TTTTCGCTGTCAATTTCAAG+AGG | + | chr4_3:49979858-49979877 | Msa0645240:intron | 35.0% |
| GACAAGCATATCATGTAAAG+AGG | + | chr4_3:49980009-49980028 | Msa0645240:intron | 35.0% | |
| ACACATATCCCAATTGTTGT+TGG | + | chr4_3:49980194-49980213 | Msa0645240:CDS | 35.0% | |
| ! | TTTGGGATCCAACAACAATT+GGG | - | chr4_3:49980205-49980224 | None:intergenic | 35.0% |
| ! | ATTTGGGATCCAACAACAAT+TGG | - | chr4_3:49980206-49980225 | None:intergenic | 35.0% |
| !!! | TTCTTGTGTTTTGGTGTGTT+AGG | + | chr4_3:49980527-49980546 | Msa0645240:intron | 35.0% |
| !! | GTTTTGGTGTGTTAGGAAAT+CGG | + | chr4_3:49980534-49980553 | Msa0645240:intron | 35.0% |
| GGAAATCGGATCATTCTTTA+TGG | + | chr4_3:49980548-49980567 | Msa0645240:intron | 35.0% | |
| CATCTTAATACCAGAACTCA+CGG | - | chr4_3:49980620-49980639 | None:intergenic | 35.0% | |
| AGTTTACATTCAAGCATCCA+TGG | + | chr4_3:49980657-49980676 | Msa0645240:intron | 35.0% | |
| CTGCACAAAAATTGAAGTGA+AGG | - | chr4_3:49980770-49980789 | None:intergenic | 35.0% | |
| ! | CTTCACTTCAATTTTTGTGC+AGG | + | chr4_3:49980768-49980787 | Msa0645240:intron | 35.0% |
| TTAGTTCGTCATGTAATCCT+AGG | + | chr4_3:49980894-49980913 | Msa0645240:intron | 35.0% | |
| ATCTGCATAAGTGACTTCTT+TGG | - | chr4_3:49981061-49981080 | None:intergenic | 35.0% | |
| AGCATATAAATCATCACACC+AGG | - | chr4_3:49981138-49981157 | None:intergenic | 35.0% | |
| ! | TATGCTTCCTTTAGGTATTG+GGG | + | chr4_3:49981152-49981171 | Msa0645240:CDS | 35.0% |
| AAGCTAAAACTGGACATAGT+TGG | + | chr4_3:49981181-49981200 | Msa0645240:CDS | 35.0% | |
| AGCTAAAACTGGACATAGTT+GGG | + | chr4_3:49981182-49981201 | Msa0645240:CDS | 35.0% | |
| GAAATCCATTTGACACTTTC+TGG | + | chr4_3:49981205-49981224 | Msa0645240:CDS | 35.0% | |
| !! | AACCGGTAGGTATTTGTTTT+AGG | + | chr4_3:49981239-49981258 | Msa0645240:intron | 35.0% |
| GGTGTACATAATCTTGAAAG+GGG | - | chr4_3:49981297-49981316 | None:intergenic | 35.0% | |
| CTGCAAACTACTTTGTCATT+AGG | + | chr4_3:49981372-49981391 | Msa0645240:intron | 35.0% | |
| TAAATGTCACTCGTAGGTAA+GGG | - | chr4_3:49981554-49981573 | None:intergenic | 35.0% | |
| !! | ACGTTATTTCTGCAGAAAAC+TGG | + | chr4_3:49981722-49981741 | Msa0645240:intron | 35.0% |
| !! | CGTTATTTCTGCAGAAAACT+GGG | + | chr4_3:49981723-49981742 | Msa0645240:intron | 35.0% |
| TTCAGAATTCAATATCGCCT+TGG | - | chr4_3:49981801-49981820 | None:intergenic | 35.0% | |
| TTTACTTCCCTTATCTCATG+CGG | + | chr4_3:49981856-49981875 | Msa0645240:intron | 35.0% | |
| GATGATAAGAGGCAATTGAA+GGG | - | chr4_3:49982112-49982131 | None:intergenic | 35.0% | |
| TGATGATAAGAGGCAATTGA+AGG | - | chr4_3:49982113-49982132 | None:intergenic | 35.0% | |
| ATCAGAACAGAAGCCATAAA+AGG | + | chr4_3:49982129-49982148 | Msa0645240:CDS | 35.0% | |
| ! | ACACAAGAAGCTACCTTTTA+TGG | - | chr4_3:49982145-49982164 | None:intergenic | 35.0% |
| CACAATAAGTAATGCAGGAA+GGG | - | chr4_3:49982201-49982220 | None:intergenic | 35.0% | |
| GTAAGCACAATAAGTAATGC+AGG | - | chr4_3:49982206-49982225 | None:intergenic | 35.0% | |
| TCAGTTCAAGCAATTCTCTA+CGG | + | chr4_3:49982280-49982299 | Msa0645240:CDS | 35.0% | |
| CTATTGTAACTGGATGGAAT+TGG | - | chr4_3:49982388-49982407 | None:intergenic | 35.0% | |
| ! | AACTAGGTTGCTATTGTAAC+TGG | - | chr4_3:49982398-49982417 | None:intergenic | 35.0% |
| ! | TTTTACTAGCAGCACCTTTT+AGG | - | chr4_3:49982543-49982562 | None:intergenic | 35.0% |
| CTAGAACCAATTAATCTTCC+TGG | + | chr4_3:49982571-49982590 | Msa0645240:CDS | 35.0% | |
| GAGGAATCTACAACAATAAG+AGG | - | chr4_3:49982628-49982647 | None:intergenic | 35.0% | |
| ! | ATACCATCCTATCAGTTTTG+TGG | + | chr4_3:49982855-49982874 | Msa0645240:CDS | 35.0% |
| TGCTCTAATCAAATTTAGGG+TGG | + | chr4_3:49983123-49983142 | Msa0645240:intron | 35.0% | |
| ! | TCAAATTTAGGGTGGCAAAA+TGG | + | chr4_3:49983131-49983150 | Msa0645240:intron | 35.0% |
| ! | CAAATTTAGGGTGGCAAAAT+GGG | + | chr4_3:49983132-49983151 | Msa0645240:intron | 35.0% |
| TTAATAATTGGAAGTGGTGG+TGG | + | chr4_3:49983403-49983422 | Msa0645240:intron | 35.0% | |
| CTGATAAAAAACGTGTCCAG+TGG | - | chr4_3:49977209-49977228 | None:intergenic | 40.0% | |
| TCTTTCAGAAATCCTACAGG+TGG | - | chr4_3:49978085-49978104 | None:intergenic | 40.0% | |
| TCTGAAAGAAGTTCCTCTTG+AGG | + | chr4_3:49978096-49978115 | Msa0645240:CDS | 40.0% | |
| !! | ATAGGTTGATTTGGAGCTTC+AGG | + | chr4_3:49978197-49978216 | Msa0645240:CDS | 40.0% |
| ! | GAACTCAGAGGACATTTTGT+TGG | + | chr4_3:49978280-49978299 | Msa0645240:CDS | 40.0% |
| CAATGTGATTGTAGCAACCA+GGG | + | chr4_3:49978404-49978423 | Msa0645240:intron | 40.0% | |
| !!! | GCAACCAGGGTTTTAAATAG+TGG | + | chr4_3:49978417-49978436 | Msa0645240:intron | 40.0% |
| ! | ACGACCACTATTTAAAACCC+TGG | - | chr4_3:49978424-49978443 | None:intergenic | 40.0% |
| !!! | AGGGTTTTAAATAGTGGTCG+TGG | + | chr4_3:49978423-49978442 | Msa0645240:intron | 40.0% |
| TTATGTCGAAGCCCAAATCA+TGG | + | chr4_3:49978549-49978568 | Msa0645240:intron | 40.0% | |
| !! | AGAACATTGGTTCCTGTTTG+GGG | - | chr4_3:49978762-49978781 | None:intergenic | 40.0% |
| !! | GAGAACATTGGTTCCTGTTT+GGG | - | chr4_3:49978763-49978782 | None:intergenic | 40.0% |
| !! | TGAGAACATTGGTTCCTGTT+TGG | - | chr4_3:49978764-49978783 | None:intergenic | 40.0% |
| AGAAGCTGAAAATTGCAGAC+AGG | - | chr4_3:49978971-49978990 | None:intergenic | 40.0% | |
| CACAAAGAATGATAGCCTGA+AGG | + | chr4_3:49979085-49979104 | Msa0645240:CDS | 40.0% | |
| TAGCCTGAAGGAGAAAATGT+CGG | + | chr4_3:49979097-49979116 | Msa0645240:CDS | 40.0% | |
| TCCCTATTACACCATTCACA+AGG | + | chr4_3:49979229-49979248 | Msa0645240:CDS | 40.0% | |
| AGTATATTGATCCAACAGGC+CGG | - | chr4_3:49979341-49979360 | None:intergenic | 40.0% | |
| !!! | GTCAGCATTTTTAGAGCTTG+AGG | - | chr4_3:49979376-49979395 | None:intergenic | 40.0% |
| CAATCACTGAATGAGGAAAC+TGG | + | chr4_3:49979466-49979485 | Msa0645240:CDS | 40.0% | |
| CATGGTATACTATATGCAGG+GGG | + | chr4_3:49979704-49979723 | Msa0645240:intron | 40.0% | |
| ! | AAAAGCATGGCTTGTCGAAA+AGG | - | chr4_3:49979755-49979774 | None:intergenic | 40.0% |
| !! | TTCGACAAGCCATGCTTTTT+AGG | + | chr4_3:49979756-49979775 | Msa0645240:CDS | 40.0% |
| GCAAGCAATCCTAAAAAGCA+TGG | - | chr4_3:49979768-49979787 | None:intergenic | 40.0% | |
| ! | TTGTTGTTGGATCCCAAATG+CGG | + | chr4_3:49980207-49980226 | Msa0645240:CDS | 40.0% |
| TGTGACTTCATACCGCATTT+GGG | - | chr4_3:49980222-49980241 | None:intergenic | 40.0% | |
| TCACAGGTGATCCACTTTAT+AGG | + | chr4_3:49980237-49980256 | Msa0645240:CDS | 40.0% | |
| CACAGGTGATCCACTTTATA+GGG | + | chr4_3:49980238-49980257 | Msa0645240:CDS | 40.0% | |
| ACTGAGTACACCATTCGTTA+AGG | - | chr4_3:49981097-49981116 | None:intergenic | 40.0% | |
| GGTGTACTCAGTATTCAAAG+AGG | + | chr4_3:49981105-49981124 | Msa0645240:CDS | 40.0% | |
| ATTCAAAGAGGAACAGATCC+TGG | + | chr4_3:49981117-49981136 | Msa0645240:CDS | 40.0% | |
| TTCGAAACCCCAATACCTAA+AGG | - | chr4_3:49981162-49981181 | None:intergenic | 40.0% | |
| GCTAAAACTGGACATAGTTG+GGG | + | chr4_3:49981183-49981202 | Msa0645240:CDS | 40.0% | |
| GTAAATGTCACTCGTAGGTA+AGG | - | chr4_3:49981555-49981574 | None:intergenic | 40.0% | |
| AGAAGGTAAATGTCACTCGT+AGG | - | chr4_3:49981560-49981579 | None:intergenic | 40.0% | |
| ATTTACCTTCTCACCTAGTG+AGG | + | chr4_3:49981569-49981588 | Msa0645240:CDS | 40.0% | |
| AATGCAATGAGTACCTCACT+AGG | - | chr4_3:49981585-49981604 | None:intergenic | 40.0% | |
| TGAACTTTCGTCTACCATCT+TGG | + | chr4_3:49981759-49981778 | Msa0645240:CDS | 40.0% | |
| AGTAAATACAGACTCAGACC+TGG | - | chr4_3:49981842-49981861 | None:intergenic | 40.0% | |
| AGCTTATCCGCATGAGATAA+GGG | - | chr4_3:49981866-49981885 | None:intergenic | 40.0% | |
| TAGCTTATCCGCATGAGATA+AGG | - | chr4_3:49981867-49981886 | None:intergenic | 40.0% | |
| GCTTCTGTTCTGATGATAAG+AGG | - | chr4_3:49982123-49982142 | None:intergenic | 40.0% | |
| GCACAATAAGTAATGCAGGA+AGG | - | chr4_3:49982202-49982221 | None:intergenic | 40.0% | |
| GAACTGATGCATATTCAGGT+CGG | - | chr4_3:49982267-49982286 | None:intergenic | 40.0% | |
| GCTTGAACTGATGCATATTC+AGG | - | chr4_3:49982271-49982290 | None:intergenic | 40.0% | |
| ! | AGGTTGCTATTGTAACTGGA+TGG | - | chr4_3:49982394-49982413 | None:intergenic | 40.0% |
| ATGCAAAAATCACCTGAACC+TGG | + | chr4_3:49982481-49982500 | Msa0645240:CDS | 40.0% | |
| TGGTGACTTACAATCATTCC+AGG | - | chr4_3:49982592-49982611 | None:intergenic | 40.0% | |
| ! | ACAACAATAAGAGGTTGGTC+TGG | - | chr4_3:49982619-49982638 | None:intergenic | 40.0% |
| ATTGTTGTAGATTCCTCCCT+TGG | + | chr4_3:49982631-49982650 | Msa0645240:CDS | 40.0% | |
| ACCACAAGAAAAACCGAAGA+AGG | - | chr4_3:49982661-49982680 | None:intergenic | 40.0% | |
| ! | TTCGGTTTTTCTTGTGGTAC+CGG | + | chr4_3:49982663-49982682 | Msa0645240:CDS | 40.0% |
| ! | TGATTTTGTCCATCCAAACC+CGG | - | chr4_3:49982685-49982704 | None:intergenic | 40.0% |
| GTATTGCCTTAATCCTTTCC+CGG | - | chr4_3:49982839-49982858 | None:intergenic | 40.0% | |
| TAGCCACAAAACTGATAGGA+TGG | - | chr4_3:49982861-49982880 | None:intergenic | 40.0% | |
| CCTTTAGCCACAAAACTGAT+AGG | - | chr4_3:49982865-49982884 | None:intergenic | 40.0% | |
| !! | CCTATCAGTTTTGTGGCTAA+AGG | + | chr4_3:49982862-49982881 | Msa0645240:CDS | 40.0% |
| !! | ATCAGTTTTGTGGCTAAAGG+AGG | + | chr4_3:49982865-49982884 | Msa0645240:CDS | 40.0% |
| TTTATGGCACTTATGCTGCG+TGG | + | chr4_3:49977824-49977843 | Msa0645240:CDS | 45.0% | |
| CGAAACGTATGTGACTGAGT+CGG | - | chr4_3:49977881-49977900 | None:intergenic | 45.0% | |
| CGACTCAGTCACATACGTTT+CGG | + | chr4_3:49977879-49977898 | Msa0645240:CDS | 45.0% | |
| AAGTTCCTCTTGAGGATGTG+AGG | + | chr4_3:49978104-49978123 | Msa0645240:CDS | 45.0% | |
| TGTGGCACAGCAGACTAATT+TGG | + | chr4_3:49978150-49978169 | Msa0645240:CDS | 45.0% | |
| ! | GATTTGGAGCTTCAGGAAGA+CGG | + | chr4_3:49978204-49978223 | Msa0645240:CDS | 45.0% |
| GAACCTAATACCGAACTCAG+AGG | + | chr4_3:49978268-49978287 | Msa0645240:CDS | 45.0% | |
| TGTCCTCTGAGTTCGGTATT+AGG | - | chr4_3:49978274-49978293 | None:intergenic | 45.0% | |
| GCAATGTGATTGTAGCAACC+AGG | + | chr4_3:49978403-49978422 | Msa0645240:intron | 45.0% | |
| CAATGTCAAAGATCGCAACG+TGG | - | chr4_3:49978461-49978480 | None:intergenic | 45.0% | |
| !! | GAACATTGGTTCCTGTTTGG+GGG | - | chr4_3:49978761-49978780 | None:intergenic | 45.0% |
| ! | TGAGTGCATCAGCTCTAATG+TGG | + | chr4_3:49979057-49979076 | Msa0645240:CDS | 45.0% |
| ! | GAGTGCATCAGCTCTAATGT+GGG | + | chr4_3:49979058-49979077 | Msa0645240:CDS | 45.0% |
| CAGGCTATCATTCTTTGTGC+TGG | - | chr4_3:49979084-49979103 | None:intergenic | 45.0% | |
| !! | AAAATGTCGGCTCTTGTTGC+CGG | + | chr4_3:49979110-49979129 | Msa0645240:CDS | 45.0% |
| TTCTTGACAAGCGGATAGAC+CGG | - | chr4_3:49979132-49979151 | None:intergenic | 45.0% | |
| CAACTTTGACAGATCTTGGC+CGG | + | chr4_3:49979319-49979338 | Msa0645240:intron | 45.0% | |
| !! | CGATTACTTTTACGACCGAG+TGG | + | chr4_3:49979405-49979424 | Msa0645240:CDS | 45.0% |
| TCACTGAATGAGGAAACTGG+AGG | + | chr4_3:49979469-49979488 | Msa0645240:CDS | 45.0% | |
| ! | TTTAGGATTGCTTGCCGTAC+AGG | + | chr4_3:49979773-49979792 | Msa0645240:CDS | 45.0% |
| CTGTGACTTCATACCGCATT+TGG | - | chr4_3:49980223-49980242 | None:intergenic | 45.0% | |
| CAAATGCGGTATGAAGTCAC+AGG | + | chr4_3:49980221-49980240 | Msa0645240:CDS | 45.0% | |
| ! | AGGTTGTCGGCTATTCTCTT+TGG | - | chr4_3:49980800-49980819 | None:intergenic | 45.0% |
| AAGAGAATAGCCGACAACCT+TGG | + | chr4_3:49980800-49980819 | Msa0645240:CDS | 45.0% | |
| CTCTGTTGTTCCAAGGTTGT+CGG | - | chr4_3:49980813-49980832 | None:intergenic | 45.0% | |
| CTTCAGTCTCTGTTGTTCCA+AGG | - | chr4_3:49980820-49980839 | None:intergenic | 45.0% | |
| CTTCTTTGGTCCATCTGAAC+AGG | - | chr4_3:49981047-49981066 | None:intergenic | 45.0% | |
| GGGGTTTCGAAAGCTAAAAC+TGG | + | chr4_3:49981171-49981190 | Msa0645240:CDS | 45.0% | |
| !! | CAGCACCAGAAAGTGTCAAA+TGG | - | chr4_3:49981213-49981232 | None:intergenic | 45.0% |
| AGTTGTTCCAGCTGCTTCAT+CGG | + | chr4_3:49981527-49981546 | Msa0645240:CDS | 45.0% | |
| ! | TTTTGTCAATCACGCGACAG+TGG | + | chr4_3:49982067-49982086 | Msa0645240:CDS | 45.0% |
| TACGGACCTTATCTTCTTGC+CGG | + | chr4_3:49982298-49982317 | Msa0645240:CDS | 45.0% | |
| TTTGATGTCCCAATTTCCGG+TGG | - | chr4_3:49982329-49982348 | None:intergenic | 45.0% | |
| ! | GGCTTTGATGTCCCAATTTC+CGG | - | chr4_3:49982332-49982351 | None:intergenic | 45.0% |
| GGAAATTGGGACATCAAAGC+CGG | + | chr4_3:49982331-49982350 | Msa0645240:CDS | 45.0% | |
| TGCAACAGCTTTGCTAGAAC+CGG | - | chr4_3:49982353-49982372 | None:intergenic | 45.0% | |
| !! | TAAGAGGTTGGTCTGGTTCT+TGG | - | chr4_3:49982612-49982631 | None:intergenic | 45.0% |
| ! | GCCTTCTTCGGTTTTTCTTG+TGG | + | chr4_3:49982657-49982676 | Msa0645240:CDS | 45.0% |
| ! | TCGGTTTTTCTTGTGGTACC+GGG | + | chr4_3:49982664-49982683 | Msa0645240:CDS | 45.0% |
| !! | TTTTCTTGTGGTACCGGGTT+TGG | + | chr4_3:49982669-49982688 | Msa0645240:CDS | 45.0% |
| GTGTATAGCGATATGAGCTC+TGG | + | chr4_3:49982745-49982764 | Msa0645240:CDS | 45.0% | |
| CAAGCAGCAAGTTTCGTTTC+CGG | + | chr4_3:49982817-49982836 | Msa0645240:CDS | 45.0% | |
| AAGCAGCAAGTTTCGTTTCC+GGG | + | chr4_3:49982818-49982837 | Msa0645240:CDS | 45.0% | |
| TCGTTTCCGGGAAAGGATTA+AGG | + | chr4_3:49982830-49982849 | Msa0645240:CDS | 45.0% | |
| !!! | AAAATTTCAAAAATAATTTT+GGG | - | chr4_3:49980131-49980150 | None:intergenic | 5.0% |
| !!! | AAAAATTTCAAAAATAATTT+TGG | - | chr4_3:49980132-49980151 | None:intergenic | 5.0% |
| !! | TTTACTTATTTATTAATAAT+TGG | + | chr4_3:49983391-49983410 | Msa0645240:intron | 5.0% |
| CCTCTGATGAAAGACGTGTC+TGG | - | chr4_3:49977122-49977141 | None:intergenic | 50.0% | |
| CCAGACACGTCTTTCATCAG+AGG | + | chr4_3:49977119-49977138 | Msa0645240:five_prime_UTR | 50.0% | |
| ACCGACCGATGAATCTGCTT+GGG | + | chr4_3:49977967-49977986 | Msa0645240:CDS | 50.0% | |
| AGCTGCCCAAGCAGATTCAT+CGG | - | chr4_3:49977975-49977994 | None:intergenic | 50.0% | |
| GGTGTGTTTAAGCCACCTGT+AGG | + | chr4_3:49978070-49978089 | Msa0645240:CDS | 50.0% | |
| TGGTACACCGTATGGAGGAT+GGG | + | chr4_3:49978243-49978262 | Msa0645240:CDS | 50.0% | |
| AGTGGTCGTGGTAACAGTTG+TGG | + | chr4_3:49978435-49978454 | Msa0645240:intron | 50.0% | |
| ! | ATTGGTTCCTGTTTGGGGGA+GGG | - | chr4_3:49978757-49978776 | None:intergenic | 50.0% |
| ! | GAGCCGACATTTTCTCCTTC+AGG | - | chr4_3:49979103-49979122 | None:intergenic | 50.0% |
| GTGTAATAGGGAGCCCAAAC+AGG | - | chr4_3:49979221-49979240 | None:intergenic | 50.0% | |
| TCTTCTCACAGCTATGCGAC+TGG | + | chr4_3:49980582-49980601 | Msa0645240:CDS | 50.0% | |
| TTTCACGGCACCTGTTCAGA+TGG | + | chr4_3:49981034-49981053 | Msa0645240:CDS | 50.0% | |
| !! | GACACTTTCTGGTGCTGCTA+CGG | + | chr4_3:49981216-49981235 | Msa0645240:CDS | 50.0% |
| GAGTACCTCACTAGGTGAGA+AGG | - | chr4_3:49981577-49981596 | None:intergenic | 50.0% | |
| ACTTTATCTTTGCCCGCTCC+AGG | + | chr4_3:49981821-49981840 | Msa0645240:CDS | 50.0% | |
| ATACAGACTCAGACCTGGAG+CGG | - | chr4_3:49981837-49981856 | None:intergenic | 50.0% | |
| TTGAAGGGTCAGCTTGTCAC+CGG | - | chr4_3:49982097-49982116 | None:intergenic | 50.0% | |
| GTGTGACCGGCAAGAAGATA+AGG | - | chr4_3:49982307-49982326 | None:intergenic | 50.0% | |
| CTAGCAAAGCTGTTGCAGAC+TGG | + | chr4_3:49982356-49982375 | Msa0645240:CDS | 50.0% | |
| GTTGTAGATTCCTCCCTTGG+CGG | + | chr4_3:49982634-49982653 | Msa0645240:CDS | 50.0% | |
| TTGTAGATTCCTCCCTTGGC+GGG | + | chr4_3:49982635-49982654 | Msa0645240:CDS | 50.0% | |
| ! | AGCGATATGAGCTCTGGTTC+AGG | + | chr4_3:49982751-49982770 | Msa0645240:CDS | 50.0% |
| CTGGTTCAGGAGTTAAGCTC+AGG | + | chr4_3:49982764-49982783 | Msa0645240:CDS | 50.0% | |
| !! | CGGAAACGAAACTTGCTGCT+TGG | - | chr4_3:49982819-49982838 | None:intergenic | 50.0% |
| GCAAGTTTCGTTTCCGGGAA+AGG | + | chr4_3:49982823-49982842 | Msa0645240:CDS | 50.0% | |
| GGGTGGCAAAATGGGATGAT+TGG | + | chr4_3:49983140-49983159 | Msa0645240:intron | 50.0% | |
| GGTGATCGCTATCCTATGTC+TGG | + | chr4_3:49983475-49983494 | Msa0645240:three_prime_UTR | 50.0% | |
| GATCGCTATCCTATGTCTGG+TGG | + | chr4_3:49983478-49983497 | Msa0645240:three_prime_UTR | 50.0% | |
| CACCGACCGATGAATCTGCT+TGG | + | chr4_3:49977966-49977985 | Msa0645240:CDS | 55.0% | |
| GCCCAAGCAGATTCATCGGT+CGG | - | chr4_3:49977971-49977990 | None:intergenic | 55.0% | |
| CTTGGGCAGCTTTGCTTCCA+AGG | + | chr4_3:49977984-49978003 | Msa0645240:CDS | 55.0% | |
| AGCAGCCTCACATCCTCAAG+AGG | - | chr4_3:49978112-49978131 | None:intergenic | 55.0% | |
| TCTTGAGGATGTGAGGCTGC+TGG | + | chr4_3:49978111-49978130 | Msa0645240:CDS | 55.0% | |
| GGAAGGTTCGATTCACGCTG+TGG | + | chr4_3:49978132-49978151 | Msa0645240:CDS | 55.0% | |
| CCATACGGTGTACCAGGAGT+CGG | - | chr4_3:49978238-49978257 | None:intergenic | 55.0% | |
| ACTCCTGGTACACCGTATGG+AGG | + | chr4_3:49978238-49978257 | Msa0645240:CDS | 55.0% | |
| CATCCTCCATACGGTGTACC+AGG | - | chr4_3:49978244-49978263 | None:intergenic | 55.0% | |
| CTGGTACACCGTATGGAGGA+TGG | + | chr4_3:49978242-49978261 | Msa0645240:CDS | 55.0% | |
| TACACCGTATGGAGGATGGG+AGG | + | chr4_3:49978246-49978265 | Msa0645240:CDS | 55.0% | |
| GGTTCCTCCCATCCTCCATA+CGG | - | chr4_3:49978253-49978272 | None:intergenic | 55.0% | |
| TTGGTTCCTGTTTGGGGGAG+GGG | - | chr4_3:49978756-49978775 | None:intergenic | 55.0% | |
| !! | CATTGGTTCCTGTTTGGGGG+AGG | - | chr4_3:49978758-49978777 | None:intergenic | 55.0% |
| TCTCACAGCTATGCGACTGG+AGG | + | chr4_3:49980585-49980604 | Msa0645240:CDS | 55.0% | |
| CTCACAGCTATGCGACTGGA+GGG | + | chr4_3:49980586-49980605 | Msa0645240:CDS | 55.0% | |
| GGACATCAGTCCGTGAGTTC+TGG | + | chr4_3:49980607-49980626 | Msa0645240:CDS | 55.0% | |
| !! | TTCTGGTGCTGCTACGGAAC+CGG | + | chr4_3:49981222-49981241 | Msa0645240:CDS | 55.0% |
| TAAGGGTCCGATGAAGCAGC+TGG | - | chr4_3:49981537-49981556 | None:intergenic | 55.0% | |
| CCATCAGCGTGAGTCCAAGA+TGG | - | chr4_3:49981776-49981795 | None:intergenic | 55.0% | |
| CCATCTTGGACTCACGCTGA+TGG | + | chr4_3:49981773-49981792 | Msa0645240:CDS | 55.0% | |
| TACAGACTCAGACCTGGAGC+GGG | - | chr4_3:49981836-49981855 | None:intergenic | 55.0% | |
| CCAATTTCCGGTGGTGTGAC+CGG | - | chr4_3:49982320-49982339 | None:intergenic | 55.0% | |
| CGGTCACACCACCGGAAATT+GGG | + | chr4_3:49982318-49982337 | Msa0645240:CDS | 55.0% | |
| TGAAGAGCGACATCAGTGCC+AGG | - | chr4_3:49982502-49982521 | None:intergenic | 55.0% | |
| ! | CTTGTGGTACCGGGTTTGGA+TGG | + | chr4_3:49982673-49982692 | Msa0645240:CDS | 55.0% |
| !! | AATTGGAAGTGGTGGTGGCC+AGG | + | chr4_3:49983408-49983427 | Msa0645240:intron | 55.0% |
| !! | ATTGGAAGTGGTGGTGGCCA+GGG | + | chr4_3:49983409-49983428 | Msa0645240:intron | 55.0% |
| CGCTATCCTATGTCTGGTGG+TGG | + | chr4_3:49983481-49983500 | Msa0645240:three_prime_UTR | 55.0% | |
| GAGGATGTGAGGCTGCTGGA+AGG | + | chr4_3:49978115-49978134 | Msa0645240:CDS | 60.0% | |
| TGGAGCTTCAGGAAGACGGC+TGG | + | chr4_3:49978208-49978227 | Msa0645240:CDS | 60.0% | |
| !! | ACGGCTGGTTTACCGACTCC+TGG | + | chr4_3:49978223-49978242 | Msa0645240:CDS | 60.0% |
| CCGACTCCTGGTACACCGTA+TGG | + | chr4_3:49978235-49978254 | Msa0645240:CDS | 60.0% | |
| TACCTACCCCTCCCCCAAAC+AGG | + | chr4_3:49978747-49978766 | Msa0645240:intron | 60.0% | |
| TTCCTGTTTGGGGGAGGGGT+AGG | - | chr4_3:49978752-49978771 | None:intergenic | 60.0% | |
| ACAGATCTTGGCCGGCCTGT+TGG | + | chr4_3:49979327-49979346 | Msa0645240:intron | 60.0% | |
| ! | GACTCACGCTGATGGTGCCA+AGG | + | chr4_3:49981781-49981800 | Msa0645240:CDS | 60.0% |
| ATCACGCGACAGTGGAGTGC+CGG | + | chr4_3:49982075-49982094 | Msa0645240:CDS | 60.0% | |
| CTTCTTGCCGGTCACACCAC+CGG | + | chr4_3:49982310-49982329 | Msa0645240:CDS | 60.0% | |
| CCGGTCACACCACCGGAAAT+TGG | + | chr4_3:49982317-49982336 | Msa0645240:CDS | 60.0% | |
| GCGACATCAGTGCCAGGTTC+AGG | - | chr4_3:49982496-49982515 | None:intergenic | 60.0% | |
| AACCGAAGAAGGCCCGCCAA+GGG | - | chr4_3:49982650-49982669 | None:intergenic | 60.0% | |
| AAACCGAAGAAGGCCCGCCA+AGG | - | chr4_3:49982651-49982670 | None:intergenic | 60.0% | |
| GGTTGTGGTCAGCAGCTGTG+TGG | + | chr4_3:49983451-49983470 | Msa0645240:three_prime_UTR | 60.0% | |
| TGTGGTCAGCAGCTGTGTGG+TGG | + | chr4_3:49983454-49983473 | Msa0645240:three_prime_UTR | 60.0% | |
| !! | GGTGCTGCTACGGAACCGGT+AGG | + | chr4_3:49981226-49981245 | Msa0645240:intron | 65.0% |
| ! | CTCCCTTGGCGGGCCTTCTT+CGG | + | chr4_3:49982645-49982664 | Msa0645240:CDS | 65.0% |
| GCTGCTGACCACAACCGCGT+CGG | - | chr4_3:49983447-49983466 | None:intergenic | 65.0% | |
| CGAAGAAGGCCCGCCAAGGG+AGG | - | chr4_3:49982647-49982666 | None:intergenic | 70.0% | |
| GGTGGCCAGGGAGCTGCTGA+CGG | + | chr4_3:49983421-49983440 | Msa0645240:intron | 70.0% | |
| GTCGGCCGTCAGCAGCTCCC+TGG | - | chr4_3:49983429-49983448 | None:intergenic | 75.0% | |
| GGAGCTGCTGACGGCCGACG+CGG | + | chr4_3:49983430-49983449 | Msa0645240:three_prime_UTR | 75.0% | |
| GCTGACGGCCGACGCGGTTG+TGG | + | chr4_3:49983436-49983455 | Msa0645240:three_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 49977093 | 49983506 | 49977093 | ID=Msa0645240;Name=Msa0645240 |
| chr4_3 | mRNA | 49977093 | 49983506 | 49977093 | ID=Msa0645240-mRNA-1;Parent=Msa0645240;Name=Msa0645240-mRNA-1;_AED=0.11;_eAED=0.11;_QI=553|1|1|1|0.78|0.66|15|128|847 |
| chr4_3 | exon | 49977093 | 49977279 | 49977093 | ID=Msa0645240-mRNA-1:exon:11902;Parent=Msa0645240-mRNA-1 |
| chr4_3 | exon | 49977312 | 49977673 | 49977312 | ID=Msa0645240-mRNA-1:exon:11903;Parent=Msa0645240-mRNA-1 |
| chr4_3 | exon | 49977793 | 49978301 | 49977793 | ID=Msa0645240-mRNA-1:exon:11904;Parent=Msa0645240-mRNA-1 |
| chr4_3 | exon | 49979048 | 49979250 | 49979048 | ID=Msa0645240-mRNA-1:exon:11905;Parent=Msa0645240-mRNA-1 |
| chr4_3 | exon | 49979331 | 49979528 | 49979331 | ID=Msa0645240-mRNA-1:exon:11906;Parent=Msa0645240-mRNA-1 |
| chr4_3 | exon | 49979723 | 49979794 | 49979723 | ID=Msa0645240-mRNA-1:exon:11907;Parent=Msa0645240-mRNA-1 |
| chr4_3 | exon | 49980164 | 49980259 | 49980164 | ID=Msa0645240-mRNA-1:exon:11908;Parent=Msa0645240-mRNA-1 |
| chr4_3 | exon | 49980549 | 49980628 | 49980549 | ID=Msa0645240-mRNA-1:exon:11909;Parent=Msa0645240-mRNA-1 |
| chr4_3 | exon | 49980790 | 49980868 | 49980790 | ID=Msa0645240-mRNA-1:exon:11910;Parent=Msa0645240-mRNA-1 |
| chr4_3 | exon | 49981033 | 49981243 | 49981033 | ID=Msa0645240-mRNA-1:exon:11911;Parent=Msa0645240-mRNA-1 |
| chr4_3 | exon | 49981394 | 49981590 | 49981394 | ID=Msa0645240-mRNA-1:exon:11912;Parent=Msa0645240-mRNA-1 |
| chr4_3 | exon | 49981737 | 49981842 | 49981737 | ID=Msa0645240-mRNA-1:exon:11913;Parent=Msa0645240-mRNA-1 |
| chr4_3 | exon | 49982061 | 49982150 | 49982061 | ID=Msa0645240-mRNA-1:exon:11914;Parent=Msa0645240-mRNA-1 |
| chr4_3 | exon | 49982260 | 49983017 | 49982260 | ID=Msa0645240-mRNA-1:exon:11915;Parent=Msa0645240-mRNA-1 |
| chr4_3 | exon | 49983430 | 49983506 | 49983430 | ID=Msa0645240-mRNA-1:exon:11916;Parent=Msa0645240-mRNA-1 |
| chr4_3 | five_prime_UTR | 49977093 | 49977279 | 49977093 | ID=Msa0645240-mRNA-1:five_prime_utr;Parent=Msa0645240-mRNA-1 |
| chr4_3 | five_prime_UTR | 49977312 | 49977673 | 49977312 | ID=Msa0645240-mRNA-1:five_prime_utr;Parent=Msa0645240-mRNA-1 |
| chr4_3 | five_prime_UTR | 49977793 | 49977796 | 49977793 | ID=Msa0645240-mRNA-1:five_prime_utr;Parent=Msa0645240-mRNA-1 |
| chr4_3 | CDS | 49977797 | 49978301 | 49977797 | ID=Msa0645240-mRNA-1:cds;Parent=Msa0645240-mRNA-1 |
| chr4_3 | CDS | 49979048 | 49979250 | 49979048 | ID=Msa0645240-mRNA-1:cds;Parent=Msa0645240-mRNA-1 |
| chr4_3 | CDS | 49979331 | 49979528 | 49979331 | ID=Msa0645240-mRNA-1:cds;Parent=Msa0645240-mRNA-1 |
| chr4_3 | CDS | 49979723 | 49979794 | 49979723 | ID=Msa0645240-mRNA-1:cds;Parent=Msa0645240-mRNA-1 |
| chr4_3 | CDS | 49980164 | 49980259 | 49980164 | ID=Msa0645240-mRNA-1:cds;Parent=Msa0645240-mRNA-1 |
| chr4_3 | CDS | 49980549 | 49980628 | 49980549 | ID=Msa0645240-mRNA-1:cds;Parent=Msa0645240-mRNA-1 |
| chr4_3 | CDS | 49980790 | 49980868 | 49980790 | ID=Msa0645240-mRNA-1:cds;Parent=Msa0645240-mRNA-1 |
| chr4_3 | CDS | 49981033 | 49981243 | 49981033 | ID=Msa0645240-mRNA-1:cds;Parent=Msa0645240-mRNA-1 |
| chr4_3 | CDS | 49981394 | 49981590 | 49981394 | ID=Msa0645240-mRNA-1:cds;Parent=Msa0645240-mRNA-1 |
| chr4_3 | CDS | 49981737 | 49981842 | 49981737 | ID=Msa0645240-mRNA-1:cds;Parent=Msa0645240-mRNA-1 |
| chr4_3 | CDS | 49982061 | 49982150 | 49982061 | ID=Msa0645240-mRNA-1:cds;Parent=Msa0645240-mRNA-1 |
| chr4_3 | CDS | 49982260 | 49982966 | 49982260 | ID=Msa0645240-mRNA-1:cds;Parent=Msa0645240-mRNA-1 |
| chr4_3 | three_prime_UTR | 49982967 | 49983017 | 49982967 | ID=Msa0645240-mRNA-1:three_prime_utr;Parent=Msa0645240-mRNA-1 |
| chr4_3 | three_prime_UTR | 49983430 | 49983506 | 49983430 | ID=Msa0645240-mRNA-1:three_prime_utr;Parent=Msa0645240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
