Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0603870 | XP_003606745.2 | 96.930 | 847 | 26 | 0 | 1 | 847 | 1 | 847 | 0.0 | 1716 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0603870 | G7JCI1 | 96.930 | 847 | 26 | 0 | 1 | 847 | 1 | 847 | 0.0 | 1716 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0603870 | Msa0645240 | 0.805018 | 1.634173e-49 | -8.615850e-47 |
Msa0603870 | Msa0754020 | 0.802735 | 4.871687e-49 | -8.615850e-47 |
Msa0603870 | Msa0801630 | 0.804347 | 2.256686e-49 | -8.615850e-47 |
Msa0603870 | Msa0807100 | 0.800563 | 1.359280e-48 | -8.615850e-47 |
Msa0603870 | Msa0833030 | 0.803555 | 3.297235e-49 | -8.615850e-47 |
Msa0603870 | Msa0942610 | 0.820682 | 6.027968e-53 | -8.615850e-47 |
Msa0603870 | Msa1143810 | 0.803932 | 2.753609e-49 | -8.615850e-47 |
Msa0603870 | Msa1293040 | 0.801177 | 1.018235e-48 | -8.615850e-47 |
Msa0603870 | Msa1296270 | 0.801816 | 7.533234e-49 | -8.615850e-47 |
Msa0603870 | Msa1340310 | 0.829132 | 6.107617e-55 | -8.615850e-47 |
Msa0603870 | Msa1342110 | 0.828044 | 1.118886e-54 | -8.615850e-47 |
Msa0603870 | Msa1408860 | 0.802376 | 5.777819e-49 | -8.615850e-47 |
Msa0603870 | Msa1422160 | 0.828936 | 6.815217e-55 | -8.615850e-47 |
Msa0603870 | Msa1449270 | 0.818571 | 1.828599e-52 | -8.615850e-47 |
Msa0603870 | Msa1453180 | 0.804721 | 1.885372e-49 | -8.615850e-47 |
Msa0457600 | Msa0603870 | 0.804720 | 1.886902e-49 | -8.615850e-47 |
Msa0497140 | Msa0603870 | 0.802794 | 4.736883e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0603870 | MtrunA17_Chr4g0032781 | 96.930 | 847 | 26 | 0 | 1 | 847 | 1 | 847 | 0.0 | 1716 |
Msa0603870 | MtrunA17_Chr4g0032831 | 85.106 | 846 | 124 | 1 | 1 | 846 | 1 | 844 | 0.0 | 1509 |
Msa0603870 | MtrunA17_Chr4g0032821 | 78.795 | 863 | 165 | 4 | 1 | 847 | 2 | 862 | 0.0 | 1415 |
Msa0603870 | MtrunA17_Chr4g0032881 | 81.443 | 97 | 18 | 0 | 750 | 846 | 23 | 119 | 1.45e-49 | 170 |
Msa0603870 | MtrunA17_Chr4g0032871 | 76.596 | 47 | 11 | 0 | 191 | 237 | 1 | 47 | 2.74e-19 | 82.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0603870 | AT5G12950.1 | 64.218 | 844 | 275 | 12 | 22 | 846 | 25 | 860 | 0.0 | 1092 |
Msa0603870 | AT5G12960.1 | 61.298 | 863 | 308 | 10 | 3 | 847 | 11 | 865 | 0.0 | 1067 |
Find 236 sgRNAs with CRISPR-Local
Find 416 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAATCCATTTGACACTTTC+TGG | 0.104833 | 4_2:+48794124 | Msa0603870:CDS |
GGAAATCGGATCATTCTTTA+TGG | 0.145770 | 4_2:+48793468 | Msa0603870:intron |
GTATAGGAAAATTAAGAATT+TGG | 0.186644 | 4_2:+48790954 | Msa0603870:CDS |
CTGTTAACTTTACTCAATTA+AGG | 0.194807 | 4_2:+48790390 | Msa0603870:five_prime_UTR |
GGCTTTGATGTCCCAATTTC+CGG | 0.200674 | 4_2:-48795247 | None:intergenic |
ACATATCAAGCTCATTTAAT+TGG | 0.209264 | 4_2:+48794394 | Msa0603870:CDS |
ATATGCTTCCTTTAGGTATT+GGG | 0.214681 | 4_2:+48794070 | Msa0603870:CDS |
ATCATTCCAGGAAGATTAAT+TGG | 0.217671 | 4_2:-48795495 | None:intergenic |
AGCTCATTTAATTGGAAATC+TGG | 0.222087 | 4_2:+48794402 | Msa0603870:CDS |
TTAGTTGAGATATAAATTTC+TGG | 0.225631 | 4_2:+48790513 | Msa0603870:five_prime_UTR |
ATATCTCAACTAAATTAAAT+TGG | 0.240773 | 4_2:-48790503 | None:intergenic |
TAAACTTTAAGAGATTAATT+TGG | 0.240869 | 4_2:-48790447 | None:intergenic |
CCGGTCACACCACCGGAAAT+TGG | 0.260920 | 4_2:+48795235 | Msa0603870:CDS |
TTGAAAATATTCAACCTGTT+TGG | 0.271856 | 4_2:+48792116 | Msa0603870:CDS |
ACCTTTAGACTTATCCTAAA+AGG | 0.276916 | 4_2:+48795444 | Msa0603870:CDS |
TGAAAATATTCAACCTGTTT+GGG | 0.277164 | 4_2:+48792117 | Msa0603870:CDS |
TAGAGCCATTATTCAACTTC+AGG | 0.281241 | 4_2:+48795823 | Msa0603870:CDS |
GCTTGAACTGATGCATATTC+AGG | 0.284821 | 4_2:-48795186 | None:intergenic |
TCGTTTCCGGGAAAGGATTA+AGG | 0.286337 | 4_2:+48795748 | Msa0603870:CDS |
ACGTTATTTCTGCAGAAAAC+TGG | 0.288118 | 4_2:+48794638 | Msa0603870:intron |
GCGTGGTTGTGTTACTATTA+AGG | 0.293026 | 4_2:+48790747 | Msa0603870:CDS |
CAAGCAGCAAGTTTCGTTTC+CGG | 0.293184 | 4_2:+48795735 | Msa0603870:CDS |
TAAGAGGTTGGTCTGGTTCT+TGG | 0.293356 | 4_2:-48795527 | None:intergenic |
TGTCCTCTGAGTTCGGTATT+AGG | 0.297824 | 4_2:-48791177 | None:intergenic |
TATATGCTTCCTTTAGGTAT+TGG | 0.298978 | 4_2:+48794069 | Msa0603870:CDS |
ATGATTTATATGCTTCCTTT+AGG | 0.300957 | 4_2:+48794063 | Msa0603870:CDS |
ATGTGTGACGTGTTTGTATC+AGG | 0.302817 | 4_2:-48790103 | None:intergenic |
TCACAGGTGATCCACTTTAT+AGG | 0.306193 | 4_2:+48793155 | Msa0603870:CDS |
CTAGAACCAATTAATCTTCC+TGG | 0.308600 | 4_2:+48795489 | Msa0603870:CDS |
TGTTTATTTCAACATTCTAT+TGG | 0.309966 | 4_2:+48795894 | Msa0603870:three_prime_UTR |
AAGCAGCAAGTTTCGTTTCC+GGG | 0.315271 | 4_2:+48795736 | Msa0603870:CDS |
TACCTTGTGAATGGTGTAAT+AGG | 0.317036 | 4_2:-48792143 | None:intergenic |
AGGTTGTCGGCTATTCTCTT+TGG | 0.319281 | 4_2:-48793716 | None:intergenic |
ATAGGTTGATTTGGAGCTTC+AGG | 0.320627 | 4_2:+48791103 | Msa0603870:CDS |
ATGATTGGGCTTTAATGTAT+AGG | 0.322038 | 4_2:+48790938 | Msa0603870:CDS |
ATTGTTGTAGATTCCTCCCT+TGG | 0.329005 | 4_2:+48795549 | Msa0603870:CDS |
TATAGGAAAATTAAGAATTT+GGG | 0.335217 | 4_2:+48790955 | Msa0603870:CDS |
CTGTGACTTCATACCGCATT+TGG | 0.335761 | 4_2:-48793138 | None:intergenic |
AGCTAAAACTGGACATAGTT+GGG | 0.338057 | 4_2:+48794101 | Msa0603870:CDS |
AACTAGGTTGCTATTGTAAC+TGG | 0.344167 | 4_2:-48795313 | None:intergenic |
ATGGCTCTAGAAGAAAATTC+TGG | 0.347474 | 4_2:-48795809 | None:intergenic |
ATCAGAACAGAAGCCATAAA+AGG | 0.349305 | 4_2:+48795045 | Msa0603870:CDS |
TACGGACCTTATCTTCTTGC+CGG | 0.352390 | 4_2:+48795216 | Msa0603870:CDS |
ATTTGGGATCCAACAACAAT+TGG | 0.357335 | 4_2:-48793121 | None:intergenic |
TCAAGCACAGAAGACTAATT+TGG | 0.361258 | 4_2:+48791056 | Msa0603870:CDS |
ACAAGAAAACAAAGATGATT+TGG | 0.370442 | 4_2:-48790278 | None:intergenic |
ATCTGCATAAGTGACTTCTT+TGG | 0.370767 | 4_2:-48793977 | None:intergenic |
CAGGCTATCATTCTTTGTGC+TGG | 0.370963 | 4_2:-48791993 | None:intergenic |
TTGTTGTAGATTCCTCCCTT+GGG | 0.372103 | 4_2:+48795550 | Msa0603870:CDS |
CACAGGTGATCCACTTTATA+GGG | 0.372586 | 4_2:+48793156 | Msa0603870:CDS |
CTTGGGCAGCTTTGCTTCCA+AGG | 0.376140 | 4_2:+48790890 | Msa0603870:CDS |
GGACATCGGTCCGTGAGTTC+TGG | 0.377326 | 4_2:+48793527 | Msa0603870:CDS |
GTATTGCCTTAATCCTTTCC+CGG | 0.380643 | 4_2:-48795754 | None:intergenic |
CGACTCAGTCGCATACGTTT+CGG | 0.382727 | 4_2:+48790785 | Msa0603870:CDS |
CTTCTTTGGTCCATCTGAAC+AGG | 0.382755 | 4_2:-48793963 | None:intergenic |
CAATCACTGAATGAGGAAAC+TGG | 0.384947 | 4_2:+48792378 | Msa0603870:CDS |
GCGACATCAGTGCCAGGTTC+AGG | 0.388376 | 4_2:-48795411 | None:intergenic |
CTGCTGGCGGCCCGCAGTTG+TGG | 0.388561 | 4_2:+48796382 | Msa0603870:three_prime_UTR |
CGGTCACACCACCGGAAATT+GGG | 0.391542 | 4_2:+48795236 | Msa0603870:CDS |
ACAGTTTATTTCAACATTCA+AGG | 0.392877 | 4_2:+48795858 | Msa0603870:CDS |
TATAGAGAAGATATAATAGA+AGG | 0.393350 | 4_2:-48790365 | None:intergenic |
CAGAAGAAAACCAACATGAT+TGG | 0.394758 | 4_2:+48790923 | Msa0603870:CDS |
AAACCCTCAAGCTCTCAAAA+TGG | 0.394868 | 4_2:+48792281 | Msa0603870:CDS |
GCTCACTCAGACAGTTGTTC+CGG | 0.394905 | 4_2:+48794434 | Msa0603870:CDS |
TGAACTTTCGTCTACCATCT+TGG | 0.395997 | 4_2:+48794675 | Msa0603870:CDS |
AAAATGTCGGCTCTTGTTGC+CGG | 0.398839 | 4_2:+48792022 | Msa0603870:CDS |
TAGATGTTGATAGGTTGATT+TGG | 0.399133 | 4_2:+48791094 | Msa0603870:CDS |
TGGTGACTTACAATCATTCC+AGG | 0.404014 | 4_2:-48795507 | None:intergenic |
TGCAACAGCTTTGCTAGAAC+CGG | 0.404572 | 4_2:-48795268 | None:intergenic |
TTTAGGATTGCTTGCCGTAC+AGG | 0.408367 | 4_2:+48792690 | Msa0603870:CDS |
CTCTGTTGTTCCAAGGTTGT+CGG | 0.409031 | 4_2:-48793729 | None:intergenic |
TTTAATTCAAGTTTGTTCTC+TGG | 0.409074 | 4_2:+48790558 | Msa0603870:five_prime_UTR |
AGATATAATAGAAGGTAGAA+AGG | 0.409773 | 4_2:-48790357 | None:intergenic |
ACAGATCTTGGCCGGCCTGT+TGG | 0.410146 | 4_2:+48792239 | Msa0603870:intron |
AACAAAATGTCCTCTGAGTT+CGG | 0.411412 | 4_2:-48791184 | None:intergenic |
CCTTTAGCCACAAAGCTGAT+AGG | 0.414243 | 4_2:-48795780 | None:intergenic |
TGTTGATGTTAGATGTTGAT+AGG | 0.416075 | 4_2:+48791085 | Msa0603870:CDS |
ACACATATCCCAATTGTTGT+TGG | 0.423041 | 4_2:+48793112 | Msa0603870:CDS |
AGCGATATGAGCTCTGGTTC+AGG | 0.427962 | 4_2:+48795669 | Msa0603870:CDS |
CTTCAGTCTCTGTTGTTCCA+AGG | 0.428325 | 4_2:-48793736 | None:intergenic |
TAGTTGAGATATAAATTTCT+GGG | 0.430452 | 4_2:+48790514 | Msa0603870:five_prime_UTR |
TTCTGGTGCTGCTACGGAAC+CGG | 0.430538 | 4_2:+48794141 | Msa0603870:CDS |
GATAATGATTTCAGGTTTCA+CGG | 0.431125 | 4_2:+48793938 | Msa0603870:intron |
GCTCATTTAATTGGAAATCT+GGG | 0.434941 | 4_2:+48794403 | Msa0603870:CDS |
TGTGACTTCATACCGCATTT+GGG | 0.435092 | 4_2:-48793137 | None:intergenic |
AAGCTAAAACTGGACATAGT+TGG | 0.435141 | 4_2:+48794100 | Msa0603870:CDS |
GGTGGTGGTCAGGGAGCTGC+TGG | 0.436160 | 4_2:+48796366 | Msa0603870:intron |
GTGTAATAGGGAGCCCAAAC+AGG | 0.437125 | 4_2:-48792130 | None:intergenic |
ACTTTATCTTTGCCCGCTCC+AGG | 0.438187 | 4_2:+48794737 | Msa0603870:CDS |
TTGGATCAATATACTGTAGC+TGG | 0.439839 | 4_2:+48792258 | Msa0603870:CDS |
TGCAAGTCTGATTCTGAAGC+TGG | 0.441014 | 4_2:+48795705 | Msa0603870:CDS |
ACCTTGTGAATGGTGTAATA+GGG | 0.442206 | 4_2:-48792142 | None:intergenic |
AATTGAATCATTCTCAAAGC+TGG | 0.442887 | 4_2:+48794314 | Msa0603870:CDS |
GATATAATAGAAGGTAGAAA+GGG | 0.444373 | 4_2:-48790356 | None:intergenic |
GGGGTTTCGAAAGCTAAAAC+TGG | 0.448832 | 4_2:+48794090 | Msa0603870:CDS |
CTATTGTAACTGGATGGAAT+TGG | 0.451167 | 4_2:-48795303 | None:intergenic |
GTAAATGTCACTCGTAGGTA+AGG | 0.451881 | 4_2:-48794471 | None:intergenic |
CCAATTTCCGGTGGTGTGAC+CGG | 0.453525 | 4_2:-48795235 | None:intergenic |
GACACTTTCTGGTGCTGCTA+CGG | 0.454466 | 4_2:+48794135 | Msa0603870:CDS |
GGGGATGTGAGGTTGCTTGA+AGG | 0.459919 | 4_2:+48791021 | Msa0603870:CDS |
AAAAGCATGGCTTGTCGAAA+AGG | 0.460007 | 4_2:-48792669 | None:intergenic |
CATCCTCCATACGGTGTACC+AGG | 0.461140 | 4_2:-48791147 | None:intergenic |
AGAAGAAAACCAACATGATT+GGG | 0.463290 | 4_2:+48790924 | Msa0603870:CDS |
TCATCCCTGAAGTTGAATAA+TGG | 0.464760 | 4_2:-48795828 | None:intergenic |
CGGAAACGAAACTTGCTGCT+TGG | 0.466133 | 4_2:-48795734 | None:intergenic |
CGTTATTTCTGCAGAAAACT+GGG | 0.466638 | 4_2:+48794639 | Msa0603870:intron |
GCAAGTTTCGTTTCCGGGAA+AGG | 0.466962 | 4_2:+48795741 | Msa0603870:CDS |
GAGGAATCTACAACAATAAG+AGG | 0.468907 | 4_2:-48795543 | None:intergenic |
CACCGACCGATGAATCTGCT+TGG | 0.469681 | 4_2:+48790872 | Msa0603870:CDS |
AGTTGTTCCGGCTGCTTCAT+CGG | 0.473362 | 4_2:+48794446 | Msa0603870:CDS |
ATCCTATGTCTGGTGGTGGC+AGG | 0.474922 | 4_2:+48796431 | Msa0603870:three_prime_UTR |
TTCTTGACAAGCGGATAGAC+CGG | 0.475274 | 4_2:-48792041 | None:intergenic |
GACAAATAATGTAAGGACTA+AGG | 0.480765 | 4_2:-48790237 | None:intergenic |
CCTATCAGCTTTGTGGCTAA+AGG | 0.481539 | 4_2:+48795780 | Msa0603870:CDS |
TTTGGGATCCAACAACAATT+GGG | 0.482174 | 4_2:-48793120 | None:intergenic |
AAATAACTCACCCTATAAAG+TGG | 0.483711 | 4_2:-48793166 | None:intergenic |
TCTTCTGATAAGATCTTCCT+TGG | 0.488745 | 4_2:-48790907 | None:intergenic |
GGATTCAAAGCATCTATTGT+TGG | 0.489543 | 4_2:+48792642 | Msa0603870:CDS |
AGAGCCATTATTCAACTTCA+GGG | 0.490418 | 4_2:+48795824 | Msa0603870:CDS |
GGTGATCGCTATCCTATGTC+TGG | 0.491309 | 4_2:+48796421 | Msa0603870:three_prime_UTR |
GCTTCTGTTCTGATGATAAG+AGG | 0.491841 | 4_2:-48795036 | None:intergenic |
GATATGTGACAAATAATGTA+AGG | 0.492154 | 4_2:-48790244 | None:intergenic |
AATTTGGAGGTTCTAATTGA+AGG | 0.492292 | 4_2:-48790431 | None:intergenic |
TATGCTTCCTTTAGGTATTG+GGG | 0.493468 | 4_2:+48794071 | Msa0603870:CDS |
ACTTTAAGAGATTAATTTGG+AGG | 0.498751 | 4_2:-48790444 | None:intergenic |
ATACCATCCTATCAGCTTTG+TGG | 0.498984 | 4_2:+48795773 | Msa0603870:CDS |
CTACAGTATATTGATCCAAC+AGG | 0.499586 | 4_2:-48792254 | None:intergenic |
TGAGATATAAATTTCTGGGC+TGG | 0.502981 | 4_2:+48790518 | Msa0603870:five_prime_UTR |
TTCAGAATTCAATATCGCCT+TGG | 0.504238 | 4_2:-48794714 | None:intergenic |
CACAACTTATAATATGTTGA+AGG | 0.508895 | 4_2:+48793766 | Msa0603870:CDS |
ACTGAGTACACCATTCGTTA+AGG | 0.509378 | 4_2:-48794013 | None:intergenic |
CAGCACCAGAAAGTGTCAAA+TGG | 0.510223 | 4_2:-48794129 | None:intergenic |
CTAGCAAAGCTGTTGCAGAC+TGG | 0.510603 | 4_2:+48795274 | Msa0603870:CDS |
CAACTTTGACAGATCTTGGC+CGG | 0.513374 | 4_2:+48792231 | Msa0603870:intron |
TAGTCTTCTGTGCTTGAGCA+TGG | 0.515586 | 4_2:-48791050 | None:intergenic |
ACCGACCGATGAATCTGCTT+GGG | 0.516084 | 4_2:+48790873 | Msa0603870:CDS |
CTGGTACACCGTATGGAGGA+TGG | 0.521019 | 4_2:+48791148 | Msa0603870:CDS |
AATCTACAACAATAAGAGGT+TGG | 0.521360 | 4_2:-48795539 | None:intergenic |
CAGCTGCTGACCACAACTGC+GGG | 0.523365 | 4_2:-48796392 | None:intergenic |
CTTGTGGTACCGGGTTTGGA+TGG | 0.523740 | 4_2:+48795591 | Msa0603870:CDS |
ATTCAAAGAGGAACAGATCC+TGG | 0.523997 | 4_2:+48794036 | Msa0603870:CDS |
TGATGATAAGAGGCAATTGA+AGG | 0.524062 | 4_2:-48795026 | None:intergenic |
TTTCACGGCACCTGTTCAGA+TGG | 0.524957 | 4_2:+48793953 | Msa0603870:CDS |
TTCTCAAAGAAGTTCCACTT+GGG | 0.526593 | 4_2:+48791001 | Msa0603870:CDS |
CTGGTTCAGGAGTTAAGCTC+AGG | 0.527444 | 4_2:+48795682 | Msa0603870:CDS |
ACAACAATAAGAGGTTGGTC+TGG | 0.530198 | 4_2:-48795534 | None:intergenic |
GACTCACGCTGATGGTGCCA+AGG | 0.531665 | 4_2:+48794697 | Msa0603870:CDS |
ATCACGCGACAGTGGAGTGC+CGG | 0.532836 | 4_2:+48794991 | Msa0603870:CDS |
GTGTGACCGGCAAGAAGATA+AGG | 0.534253 | 4_2:-48795222 | None:intergenic |
GGTGGTCAGGGAGCTGCTGG+CGG | 0.535422 | 4_2:+48796369 | Msa0603870:intron |
GTGTATAGCGATATGAGCTC+TGG | 0.536493 | 4_2:+48795663 | Msa0603870:CDS |
CGCTATCCTATGTCTGGTGG+TGG | 0.536818 | 4_2:+48796427 | Msa0603870:three_prime_UTR |
CTTCTTGCCGGTCACACCAC+CGG | 0.538122 | 4_2:+48795228 | Msa0603870:CDS |
GGTGTGTTTAAGCCACCTGT+TGG | 0.539489 | 4_2:+48790976 | Msa0603870:CDS |
TGTTGTAGATTCCTCCCTTG+GGG | 0.539670 | 4_2:+48795551 | Msa0603870:CDS |
ATTGAATCATTCTCAAAGCT+GGG | 0.541879 | 4_2:+48794315 | Msa0603870:CDS |
ATTGATATGTGTTACCTGTA+CGG | 0.542818 | 4_2:-48792704 | None:intergenic |
TTGTAGATTCCTCCCTTGGG+GGG | 0.543115 | 4_2:+48795553 | Msa0603870:CDS |
AAGAGAATAGCCGACAACCT+TGG | 0.544736 | 4_2:+48793719 | Msa0603870:CDS |
CCGACTCCTGGTACACCGTA+TGG | 0.545762 | 4_2:+48791141 | Msa0603870:CDS |
TGAGTGCATCAGCTCTAATG+TGG | 0.550383 | 4_2:+48791969 | Msa0603870:CDS |
TGGTACACCGTATGGAGGAT+GGG | 0.551695 | 4_2:+48791149 | Msa0603870:CDS |
ACATTAAAGCCCAATCATGT+TGG | 0.552104 | 4_2:-48790933 | None:intergenic |
ACTTCTTTGAGAAATCCAAC+AGG | 0.553641 | 4_2:-48790991 | None:intergenic |
GTTGTAGATTCCTCCCTTGG+GGG | 0.554766 | 4_2:+48795552 | Msa0603870:CDS |
TTCGAAACCCCAATACCTAA+AGG | 0.555523 | 4_2:-48794078 | None:intergenic |
TGGAGCTTCAGGAAGACGGC+TGG | 0.556390 | 4_2:+48791114 | Msa0603870:CDS |
GATTAATATCATCTCGTGAA+AGG | 0.556843 | 4_2:-48790215 | None:intergenic |
CCTCTGATGAAAGACGTGTC+TGG | 0.560973 | 4_2:-48790065 | None:intergenic |
TTGAAGGGTCAGCTTGTCAC+CGG | 0.561700 | 4_2:-48795010 | None:intergenic |
ACACTATCAATCACTGAATG+AGG | 0.561789 | 4_2:+48792371 | Msa0603870:CDS |
GGTTCCTCCCATCCTCCATA+CGG | 0.561878 | 4_2:-48791156 | None:intergenic |
ACGGCTGGTTTACCGACTCC+TGG | 0.562227 | 4_2:+48791129 | Msa0603870:CDS |
TGAAGAGCGACATCAGTGCC+AGG | 0.564631 | 4_2:-48795417 | None:intergenic |
TAAGGGTCCGATGAAGCAGC+CGG | 0.570315 | 4_2:-48794453 | None:intergenic |
AGCTGCCCAAGCAGATTCAT+CGG | 0.572308 | 4_2:-48790878 | None:intergenic |
TTTCTCAAAGAAGTTCCACT+TGG | 0.576399 | 4_2:+48791000 | Msa0603870:CDS |
TACAGACTCAGACCTGGAGC+GGG | 0.576888 | 4_2:-48794749 | None:intergenic |
TCTTCTCACAGCTATGCGAC+TGG | 0.577040 | 4_2:+48793502 | Msa0603870:CDS |
AAGTTCCACTTGGGGATGTG+AGG | 0.581746 | 4_2:+48791010 | Msa0603870:CDS |
TATGAGCGTGCCTTAACGAA+TGG | 0.583068 | 4_2:+48794003 | Msa0603870:CDS |
GGAAATTGGGACATCAAAGC+CGG | 0.586825 | 4_2:+48795249 | Msa0603870:CDS |
AGGTTGCTATTGTAACTGGA+TGG | 0.587968 | 4_2:-48795309 | None:intergenic |
GCCCAAGCAGATTCATCGGT+CGG | 0.593496 | 4_2:-48790874 | None:intergenic |
CCATCTTGGACTCACGCTGA+TGG | 0.593659 | 4_2:+48794689 | Msa0603870:CDS |
GATTTGGAGCTTCAGGAAGA+CGG | 0.595474 | 4_2:+48791110 | Msa0603870:CDS |
GAGTACCTCACTAGGTGAGA+AGG | 0.599416 | 4_2:-48794493 | None:intergenic |
TGTGGTCAGCAGCTGTGTGG+TGG | 0.600871 | 4_2:+48796400 | Msa0603870:three_prime_UTR |
TGTGTGACGTGTTTGTATCA+GGG | 0.602492 | 4_2:-48790102 | None:intergenic |
ATCAGCTTTGTGGCTAAAGG+AGG | 0.602889 | 4_2:+48795783 | Msa0603870:CDS |
AAGCTCTCAAAATGGTGACA+TGG | 0.603418 | 4_2:+48792289 | Msa0603870:CDS |
TCAGTTCAAGCAATTCTCTA+CGG | 0.603741 | 4_2:+48795198 | Msa0603870:CDS |
TAGCCACAAAGCTGATAGGA+TGG | 0.604345 | 4_2:-48795776 | None:intergenic |
CCATCAGCGTGAGTCCAAGA+TGG | 0.605522 | 4_2:-48794689 | None:intergenic |
GCTAAAACTGGACATAGTTG+GGG | 0.607890 | 4_2:+48794102 | Msa0603870:CDS |
TTACAAATTATATAGTGTAA+CGG | 0.608043 | 4_2:+48792419 | Msa0603870:CDS |
ATACAGACTCAGACCTGGAG+CGG | 0.609148 | 4_2:-48794750 | None:intergenic |
TCTCAAAGAAGTTCCACTTG+GGG | 0.609452 | 4_2:+48791002 | Msa0603870:CDS |
TCTCAAAATGGTGACATGGA+TGG | 0.613135 | 4_2:+48792293 | Msa0603870:CDS |
TCTCACAGCTATGCGACTGG+AGG | 0.614490 | 4_2:+48793505 | Msa0603870:CDS |
AGAAGGTAAATGTCACTCGT+AGG | 0.615292 | 4_2:-48794476 | None:intergenic |
CATCTTAATACCAGAACTCA+CGG | 0.617204 | 4_2:-48793537 | None:intergenic |
GATGATAAGAGGCAATTGAA+GGG | 0.617420 | 4_2:-48795025 | None:intergenic |
AGCATATAAATCATCACACC+AGG | 0.618298 | 4_2:-48794054 | None:intergenic |
ACAGCTGCTGACCACAACTG+CGG | 0.619949 | 4_2:-48796393 | None:intergenic |
TCTTTGAGAAATCCAACAGG+TGG | 0.620033 | 4_2:-48790988 | None:intergenic |
TAAATGTCACTCGTAGGTAA+GGG | 0.624192 | 4_2:-48794470 | None:intergenic |
CTCCTGCCACCACCAGACAT+AGG | 0.626096 | 4_2:-48796433 | None:intergenic |
ATTTACCTTCTCACCTAGTG+AGG | 0.630654 | 4_2:+48794488 | Msa0603870:CDS |
AATGCAATGAGTACCTCACT+AGG | 0.632196 | 4_2:-48794501 | None:intergenic |
CACAAAGAATGATAGCCTGA+AGG | 0.636801 | 4_2:+48791997 | Msa0603870:CDS |
CCAGACACGTCTTTCATCAG+AGG | 0.639396 | 4_2:+48790065 | Msa0603870:five_prime_UTR |
AGTATATTGATCCAACAGGC+CGG | 0.642469 | 4_2:-48792250 | None:intergenic |
TTTGATGTCCCAATTTCCGG+TGG | 0.643405 | 4_2:-48795244 | None:intergenic |
CAAATGCGGTATGAAGTCAC+AGG | 0.645340 | 4_2:+48793139 | Msa0603870:CDS |
GAGTGCATCAGCTCTAATGT+GGG | 0.646670 | 4_2:+48791970 | Msa0603870:CDS |
GATCGCTATCCTATGTCTGG+TGG | 0.647033 | 4_2:+48796424 | Msa0603870:three_prime_UTR |
CTATGCGACTGGAGGGACAT+CGG | 0.651300 | 4_2:+48793513 | Msa0603870:CDS |
TCGATATAACATTCACCACT+CGG | 0.652176 | 4_2:-48792332 | None:intergenic |
CTCACAGCTATGCGACTGGA+GGG | 0.653289 | 4_2:+48793506 | Msa0603870:CDS |
TTGCATCAAAGAATGAGACA+TGG | 0.656551 | 4_2:+48790818 | Msa0603870:CDS |
CCATACGGTGTACCAGGAGT+CGG | 0.658192 | 4_2:-48791141 | None:intergenic |
TTGTTGTTGGATCCCAAATG+CGG | 0.660110 | 4_2:+48793125 | Msa0603870:CDS |
CGAAACGTATGCGACTGAGT+CGG | 0.661456 | 4_2:-48790784 | None:intergenic |
AGCAACCTCACATCCCCAAG+TGG | 0.662619 | 4_2:-48791015 | None:intergenic |
TACTGAATGATGTATAGACT+AGG | 0.668553 | 4_2:-48794372 | None:intergenic |
ACTCCTGGTACACCGTATGG+AGG | 0.671069 | 4_2:+48791144 | Msa0603870:CDS |
GAACTGATGCATATTCAGGT+CGG | 0.673754 | 4_2:-48795182 | None:intergenic |
TAGCCTGAAGGAGAAAATGT+CGG | 0.674437 | 4_2:+48792009 | Msa0603870:CDS |
GGTGTACTCAGTATTCAAAG+AGG | 0.683770 | 4_2:+48794024 | Msa0603870:CDS |
TCCCTATTACACCATTCACA+AGG | 0.687838 | 4_2:+48792141 | Msa0603870:CDS |
AGTTGTGGTCAGCAGCTGTG+TGG | 0.701518 | 4_2:+48796397 | Msa0603870:three_prime_UTR |
GAACCTAATACCGAACTCAG+AGG | 0.704808 | 4_2:+48791174 | Msa0603870:CDS |
TACACCGTATGGAGGATGGG+AGG | 0.724621 | 4_2:+48791152 | Msa0603870:CDS |
GTTATGACACTTATGCTGCG+TGG | 0.726006 | 4_2:+48790730 | Msa0603870:CDS |
TCACTGAATGAGGAAACTGG+AGG | 0.742577 | 4_2:+48792381 | Msa0603870:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GAAAATTTCAAAAATAATTT+TGG | - | chr4_2:48793049-48793068 | None:intergenic | 10.0% |
!!! | TAAACTTTAAGAGATTAATT+TGG | - | chr4_2:48790450-48790469 | None:intergenic | 15.0% |
!! | ATATCTCAACTAAATTAAAT+TGG | - | chr4_2:48790506-48790525 | None:intergenic | 15.0% |
!! | TATAGGAAAATTAAGAATTT+GGG | + | chr4_2:48790955-48790974 | Msa0603870:CDS | 15.0% |
!!! | TTAAAAGTGTTGTAAATAAA+AGG | - | chr4_2:48791488-48791507 | None:intergenic | 15.0% |
!! | TTACAAATTATATAGTGTAA+CGG | + | chr4_2:48792419-48792438 | Msa0603870:CDS | 15.0% |
!!! | CTGTTAATTTTTATACTAAA+AGG | - | chr4_2:48792493-48792512 | None:intergenic | 15.0% |
!! | GCTATTATAATTTATAAATG+CGG | - | chr4_2:48792830-48792849 | None:intergenic | 15.0% |
!! | AAGAACAAATATTAGAAAAT+TGG | - | chr4_2:48793432-48793451 | None:intergenic | 15.0% |
!!! | GATATTTTTTTCTTCTTAAA+AGG | + | chr4_2:48793599-48793618 | Msa0603870:intron | 15.0% |
!! | GTATAAATTTATAATCTCAA+AGG | - | chr4_2:48794577-48794596 | None:intergenic | 15.0% |
!!! | ATTTTGTACAGAATTTTTAT+TGG | - | chr4_2:48796138-48796157 | None:intergenic | 15.0% |
!! | AAAAAATTAATATAGACTCA+TGG | - | chr4_2:48796211-48796230 | None:intergenic | 15.0% |
!! | TATTTATTAATAATTGGAAG+TGG | + | chr4_2:48796345-48796364 | Msa0603870:intron | 15.0% |
!! | TATAGAGAAGATATAATAGA+AGG | - | chr4_2:48790368-48790387 | None:intergenic | 20.0% |
!! | TTAGTTGAGATATAAATTTC+TGG | + | chr4_2:48790513-48790532 | Msa0603870:five_prime_UTR | 20.0% |
!! | TAGTTGAGATATAAATTTCT+GGG | + | chr4_2:48790514-48790533 | Msa0603870:five_prime_UTR | 20.0% |
!!! | ATCTATGCTGTTTTATTTTT+TGG | + | chr4_2:48790594-48790613 | Msa0603870:intron | 20.0% |
!! | GTATAGGAAAATTAAGAATT+TGG | + | chr4_2:48790954-48790973 | Msa0603870:CDS | 20.0% |
!!! | TTTAGTTTTCTTAGTTGAAA+GGG | + | chr4_2:48791263-48791282 | Msa0603870:intron | 20.0% |
!! | CACATTGTCAAAAATAAAAA+AGG | - | chr4_2:48791937-48791956 | None:intergenic | 20.0% |
!!! | TTTTATTTTTGACAATGTGA+AGG | + | chr4_2:48791938-48791957 | Msa0603870:intron | 20.0% |
!!! | TTTATTTTTGACAATGTGAA+GGG | + | chr4_2:48791939-48791958 | Msa0603870:intron | 20.0% |
!! | AGTATAAAAATTAACAGACA+TGG | + | chr4_2:48792496-48792515 | Msa0603870:intron | 20.0% |
!! | CTTATAAAATCCATCAAATA+TGG | - | chr4_2:48792530-48792549 | None:intergenic | 20.0% |
!! | ACTAAATAATATTCAAGTAG+AGG | - | chr4_2:48792995-48793014 | None:intergenic | 20.0% |
!!! | GAAATTTTCTTTTTTCATGT+AGG | + | chr4_2:48793060-48793079 | Msa0603870:intron | 20.0% |
!!! | AAAGTTTACTTGCTATTTAT+TGG | + | chr4_2:48793238-48793257 | Msa0603870:intron | 20.0% |
!! | AATGTCTGTAAGAATTAATA+GGG | - | chr4_2:48793331-48793350 | None:intergenic | 20.0% |
!!! | TTATAATTGTTTCTGTCATT+CGG | - | chr4_2:48793389-48793408 | None:intergenic | 20.0% |
!!! | TAATATTTGTTCTTGTGTTT+TGG | + | chr4_2:48793438-48793457 | Msa0603870:intron | 20.0% |
!! | TAAGAAGAAAAAAATATCCA+TGG | - | chr4_2:48793597-48793616 | None:intergenic | 20.0% |
!!! | TTGCTTTATTTTTAGATACT+CGG | + | chr4_2:48793642-48793661 | Msa0603870:intron | 20.0% |
!! | TGTTTATTTCAACATTCTAT+TGG | + | chr4_2:48795894-48795913 | Msa0603870:three_prime_UTR | 20.0% |
!! | TTTGATTATTTGAACTTTGT+AGG | - | chr4_2:48795949-48795968 | None:intergenic | 20.0% |
!! | ATTGAAAATATGATAGGATT+TGG | - | chr4_2:48796167-48796186 | None:intergenic | 20.0% |
! | GATATGTGACAAATAATGTA+AGG | - | chr4_2:48790247-48790266 | None:intergenic | 25.0% |
! | ACAAGAAAACAAAGATGATT+TGG | - | chr4_2:48790281-48790300 | None:intergenic | 25.0% |
! | GATATAATAGAAGGTAGAAA+GGG | - | chr4_2:48790359-48790378 | None:intergenic | 25.0% |
! | AGATATAATAGAAGGTAGAA+AGG | - | chr4_2:48790360-48790379 | None:intergenic | 25.0% |
! | CTGTTAACTTTACTCAATTA+AGG | + | chr4_2:48790390-48790409 | Msa0603870:five_prime_UTR | 25.0% |
!! | ACTTTAAGAGATTAATTTGG+AGG | - | chr4_2:48790447-48790466 | None:intergenic | 25.0% |
!! | TTTAATTCAAGTTTGTTCTC+TGG | + | chr4_2:48790558-48790577 | Msa0603870:five_prime_UTR | 25.0% |
! | GCTTAATGACTTATAGATTA+AGG | + | chr4_2:48790627-48790646 | Msa0603870:intron | 25.0% |
!! | TGAAATTTTCAGAAAGATGA+AGG | + | chr4_2:48790687-48790706 | Msa0603870:intron | 25.0% |
!! | GGTTTTTGTGTTTATGTTTA+TGG | + | chr4_2:48790708-48790727 | Msa0603870:CDS | 25.0% |
!! | AATGTTCTTTATTTGTACCA+AGG | + | chr4_2:48791238-48791257 | Msa0603870:intron | 25.0% |
!!! | CTTTAGTTTTCTTAGTTGAA+AGG | + | chr4_2:48791262-48791281 | Msa0603870:intron | 25.0% |
! | CTAATTACTACACATAAAAG+TGG | - | chr4_2:48791551-48791570 | None:intergenic | 25.0% |
! | AGGTAGCAAAACATAAAAAA+TGG | - | chr4_2:48791637-48791656 | None:intergenic | 25.0% |
!! | AACTTTACTTAGTTTGAAGT+TGG | + | chr4_2:48791767-48791786 | Msa0603870:intron | 25.0% |
! | AGAGATATTTCAGAAGTTAT+GGG | - | chr4_2:48791793-48791812 | None:intergenic | 25.0% |
! | TTGAAAATATTCAACCTGTT+TGG | + | chr4_2:48792116-48792135 | Msa0603870:CDS | 25.0% |
! | TGAAAATATTCAACCTGTTT+GGG | + | chr4_2:48792117-48792136 | Msa0603870:CDS | 25.0% |
!!! | GCATAATCAAAATCTAGTTT+TGG | - | chr4_2:48792172-48792191 | None:intergenic | 25.0% |
! | AAATTATATAGTGTAACGGT+AGG | + | chr4_2:48792423-48792442 | Msa0603870:intron | 25.0% |
! | TAATTCAATGTAATCCACAT+TGG | + | chr4_2:48792743-48792762 | Msa0603870:intron | 25.0% |
!!! | GACACTTATTTTATAAAGGA+GGG | - | chr4_2:48792973-48792992 | None:intergenic | 25.0% |
!!! | AGAGGACACTTATTTTATAA+AGG | - | chr4_2:48792977-48792996 | None:intergenic | 25.0% |
! | ATTGTATTTGATGTTATGAC+TGG | + | chr4_2:48793021-48793040 | Msa0603870:intron | 25.0% |
!!! | GTTTTAATCGTAATGTTTAG+TGG | + | chr4_2:48793274-48793293 | Msa0603870:intron | 25.0% |
! | ATGTCTGTAAGAATTAATAG+GGG | - | chr4_2:48793330-48793349 | None:intergenic | 25.0% |
! | GAATGTCTGTAAGAATTAAT+AGG | - | chr4_2:48793332-48793351 | None:intergenic | 25.0% |
! | AAATTGGAAATCATAGCATA+TGG | - | chr4_2:48793416-48793435 | None:intergenic | 25.0% |
! | CACAACTTATAATATGTTGA+AGG | + | chr4_2:48793766-48793785 | Msa0603870:CDS | 25.0% |
! | ATGATTTATATGCTTCCTTT+AGG | + | chr4_2:48794063-48794082 | Msa0603870:CDS | 25.0% |
!! | ACTCGATGATTTTATTCAAT+AGG | - | chr4_2:48794237-48794256 | None:intergenic | 25.0% |
!!! | AGATTCTATCTATTTTGAAG+AGG | + | chr4_2:48794338-48794357 | Msa0603870:CDS | 25.0% |
! | ACATATCAAGCTCATTTAAT+TGG | + | chr4_2:48794394-48794413 | Msa0603870:CDS | 25.0% |
! | TATCTTCTAATGATAGGTAT+TGG | + | chr4_2:48794550-48794569 | Msa0603870:intron | 25.0% |
! | TTGCAGAAGAAAAATATAGA+GGG | - | chr4_2:48794602-48794621 | None:intergenic | 25.0% |
! | TATTTACTGTCTTGATTTCT+AGG | + | chr4_2:48794955-48794974 | Msa0603870:intron | 25.0% |
! | ATTTACTGTCTTGATTTCTA+GGG | + | chr4_2:48794956-48794975 | Msa0603870:intron | 25.0% |
!! | ATTTTTGCATTGTAAGTGAT+TGG | - | chr4_2:48795389-48795408 | None:intergenic | 25.0% |
! | ACAGTTTATTTCAACATTCA+AGG | + | chr4_2:48795858-48795877 | Msa0603870:CDS | 25.0% |
! | AAGTGCTCTAATCAAATTTA+GGG | + | chr4_2:48796033-48796052 | Msa0603870:intron | 25.0% |
!!! | TGTAAGTGAATTGTTTTGAT+TGG | - | chr4_2:48796106-48796125 | None:intergenic | 25.0% |
! | CCATCAATTGAAAATATGAT+AGG | - | chr4_2:48796173-48796192 | None:intergenic | 25.0% |
!! | CCTATCATATTTTCAATTGA+TGG | + | chr4_2:48796170-48796189 | Msa0603870:intron | 25.0% |
! | TTAATATAGACTCATGGATT+TGG | - | chr4_2:48796205-48796224 | None:intergenic | 25.0% |
! | TTATTAATAATTGGAAGTGG+TGG | + | chr4_2:48796348-48796367 | Msa0603870:intron | 25.0% |
GATTAATATCATCTCGTGAA+AGG | - | chr4_2:48790218-48790237 | None:intergenic | 30.0% | |
GACAAATAATGTAAGGACTA+AGG | - | chr4_2:48790240-48790259 | None:intergenic | 30.0% | |
! | AATTTGGAGGTTCTAATTGA+AGG | - | chr4_2:48790434-48790453 | None:intergenic | 30.0% |
AGAAGAAAACCAACATGATT+GGG | + | chr4_2:48790924-48790943 | Msa0603870:CDS | 30.0% | |
! | ATGATTGGGCTTTAATGTAT+AGG | + | chr4_2:48790938-48790957 | Msa0603870:CDS | 30.0% |
TGTTGATGTTAGATGTTGAT+AGG | + | chr4_2:48791085-48791104 | Msa0603870:CDS | 30.0% | |
!! | TAGATGTTGATAGGTTGATT+TGG | + | chr4_2:48791094-48791113 | Msa0603870:CDS | 30.0% |
ACTAAGAAAACTAAAGACCT+TGG | - | chr4_2:48791258-48791277 | None:intergenic | 30.0% | |
AAAGAATCGCAGTAAAATAC+AGG | + | chr4_2:48791388-48791407 | Msa0603870:intron | 30.0% | |
ATACAACACAACAATGATTG+AGG | - | chr4_2:48791414-48791433 | None:intergenic | 30.0% | |
GAGAGATATTTCAGAAGTTA+TGG | - | chr4_2:48791794-48791813 | None:intergenic | 30.0% | |
!!! | TCCAATTTTTTCTTGACAAG+CGG | - | chr4_2:48792053-48792072 | None:intergenic | 30.0% |
TGTCAAGAAAAAATTGGAAC+AGG | + | chr4_2:48792055-48792074 | Msa0603870:CDS | 30.0% | |
TCAAATCGATCAAAAAACTC+TGG | - | chr4_2:48792100-48792119 | None:intergenic | 30.0% | |
!! | TTTTGGTTATACCTTGTGAA+TGG | - | chr4_2:48792155-48792174 | None:intergenic | 30.0% |
! | TTTGATTATGCATGTGCTTT+TGG | + | chr4_2:48792181-48792200 | Msa0603870:intron | 30.0% |
ATTGAGATCACACAGTAATA+AGG | - | chr4_2:48792207-48792226 | None:intergenic | 30.0% | |
TATTCAACTTTGACAGATCT+TGG | + | chr4_2:48792227-48792246 | Msa0603870:intron | 30.0% | |
TCATGAATGATGTTATTCAC+CGG | + | chr4_2:48792455-48792474 | Msa0603870:intron | 30.0% | |
TAAAAGGAAACATATCCAAC+CGG | - | chr4_2:48792477-48792496 | None:intergenic | 30.0% | |
GGATTCTAATCCATATTTGA+TGG | + | chr4_2:48792517-48792536 | Msa0603870:intron | 30.0% | |
CATTCAAAGCTAGCATATTA+TGG | + | chr4_2:48792555-48792574 | Msa0603870:intron | 30.0% | |
TGTAAATTACAGCGATAACT+AGG | - | chr4_2:48792583-48792602 | None:intergenic | 30.0% | |
ACCAAGACAGATTTACATTA+GGG | - | chr4_2:48792607-48792626 | None:intergenic | 30.0% | |
TACCAAGACAGATTTACATT+AGG | - | chr4_2:48792608-48792627 | None:intergenic | 30.0% | |
ATTGATATGTGTTACCTGTA+CGG | - | chr4_2:48792707-48792726 | None:intergenic | 30.0% | |
CATAAAGTTGAAGCAGAAAT+TGG | - | chr4_2:48792907-48792926 | None:intergenic | 30.0% | |
!!! | GGACACTTATTTTATAAAGG+AGG | - | chr4_2:48792974-48792993 | None:intergenic | 30.0% |
AAATAACTCACCCTATAAAG+TGG | - | chr4_2:48793169-48793188 | None:intergenic | 30.0% | |
ATGTTTAGTGGTATCATTTG+AGG | + | chr4_2:48793286-48793305 | Msa0603870:intron | 30.0% | |
TGCACAAAAATTGAAGTGAA+GGG | - | chr4_2:48793688-48793707 | None:intergenic | 30.0% | |
CTAATCGAATTAAGAGTGAT+TGG | - | chr4_2:48793797-48793816 | None:intergenic | 30.0% | |
!! | TACACATTTTTAACTCTCCT+AGG | - | chr4_2:48793833-48793852 | None:intergenic | 30.0% |
! | CTAAGAATCATAACTGACTT+AGG | - | chr4_2:48793888-48793907 | None:intergenic | 30.0% |
TGTTGCAAGATAATGATTTC+AGG | + | chr4_2:48793930-48793949 | Msa0603870:intron | 30.0% | |
!! | GATAATGATTTCAGGTTTCA+CGG | + | chr4_2:48793938-48793957 | Msa0603870:intron | 30.0% |
TATATGCTTCCTTTAGGTAT+TGG | + | chr4_2:48794069-48794088 | Msa0603870:CDS | 30.0% | |
ATATGCTTCCTTTAGGTATT+GGG | + | chr4_2:48794070-48794089 | Msa0603870:CDS | 30.0% | |
AACCTAAAACAAATACCTAC+CGG | - | chr4_2:48794163-48794182 | None:intergenic | 30.0% | |
TAGGTGTACATAATCTTGAA+AGG | - | chr4_2:48794218-48794237 | None:intergenic | 30.0% | |
AATTGAATCATTCTCAAAGC+TGG | + | chr4_2:48794314-48794333 | Msa0603870:CDS | 30.0% | |
ATTGAATCATTCTCAAAGCT+GGG | + | chr4_2:48794315-48794334 | Msa0603870:CDS | 30.0% | |
!! | TCTATCTATTTTGAAGAGGA+AGG | + | chr4_2:48794342-48794361 | Msa0603870:CDS | 30.0% |
!! | CTATCTATTTTGAAGAGGAA+GGG | + | chr4_2:48794343-48794362 | Msa0603870:CDS | 30.0% |
TACTGAATGATGTATAGACT+AGG | - | chr4_2:48794375-48794394 | None:intergenic | 30.0% | |
AGCTCATTTAATTGGAAATC+TGG | + | chr4_2:48794402-48794421 | Msa0603870:CDS | 30.0% | |
GCTCATTTAATTGGAAATCT+GGG | + | chr4_2:48794403-48794422 | Msa0603870:CDS | 30.0% | |
! | GTACTCATTGCATTTTCTTT+TGG | + | chr4_2:48794510-48794529 | Msa0603870:intron | 30.0% |
ACCACATATCTTCTAATGAT+AGG | + | chr4_2:48794544-48794563 | Msa0603870:intron | 30.0% | |
ACCTATCATTAGAAGATATG+TGG | - | chr4_2:48794548-48794567 | None:intergenic | 30.0% | |
GTTGCAGAAGAAAAATATAG+AGG | - | chr4_2:48794603-48794622 | None:intergenic | 30.0% | |
TGCAGAAATAACGTTTAGAA+AGG | - | chr4_2:48794632-48794651 | None:intergenic | 30.0% | |
TAATCGCCTAAAAACTAAGA+CGG | + | chr4_2:48794810-48794829 | Msa0603870:intron | 30.0% | |
!! | TCTTTTCCGTCTTAGTTTTT+AGG | - | chr4_2:48794819-48794838 | None:intergenic | 30.0% |
! | TTAGTCCATTCCTTTAAGTT+AGG | + | chr4_2:48794847-48794866 | Msa0603870:intron | 30.0% |
TTTGTCCTAACTTAAAGGAA+TGG | - | chr4_2:48794855-48794874 | None:intergenic | 30.0% | |
!! | GTGTTTTTGTCCTAACTTAA+AGG | - | chr4_2:48794860-48794879 | None:intergenic | 30.0% |
! | AGTCTTGTGAAAAAGAAACT+AGG | - | chr4_2:48795332-48795351 | None:intergenic | 30.0% |
ACCTTTAGACTTATCCTAAA+AGG | + | chr4_2:48795444-48795463 | Msa0603870:CDS | 30.0% | |
!!! | ACCTTTTAGGATAAGTCTAA+AGG | - | chr4_2:48795448-48795467 | None:intergenic | 30.0% |
ATCATTCCAGGAAGATTAAT+TGG | - | chr4_2:48795498-48795517 | None:intergenic | 30.0% | |
AATCTACAACAATAAGAGGT+TGG | - | chr4_2:48795542-48795561 | None:intergenic | 30.0% | |
GATTATTTGAACTTTGTAGG+TGG | - | chr4_2:48795946-48795965 | None:intergenic | 30.0% | |
! | CTAAATTTGATTAGAGCACT+TGG | - | chr4_2:48796034-48796053 | None:intergenic | 30.0% |
CAAGTGCTCTAATCAAATTT+AGG | + | chr4_2:48796032-48796051 | Msa0603870:intron | 30.0% | |
GAACAAAAAAACAAGTCCAC+CGG | + | chr4_2:48790136-48790155 | Msa0603870:five_prime_UTR | 35.0% | |
CTTCTGATAAAAAACGTGTC+CGG | - | chr4_2:48790158-48790177 | None:intergenic | 35.0% | |
! | TGAGATATAAATTTCTGGGC+TGG | + | chr4_2:48790518-48790537 | Msa0603870:five_prime_UTR | 35.0% |
TTGCATCAAAGAATGAGACA+TGG | + | chr4_2:48790818-48790837 | Msa0603870:CDS | 35.0% | |
TCTTCTGATAAGATCTTCCT+TGG | - | chr4_2:48790910-48790929 | None:intergenic | 35.0% | |
CAGAAGAAAACCAACATGAT+TGG | + | chr4_2:48790923-48790942 | Msa0603870:CDS | 35.0% | |
ACATTAAAGCCCAATCATGT+TGG | - | chr4_2:48790936-48790955 | None:intergenic | 35.0% | |
! | ACTTCTTTGAGAAATCCAAC+AGG | - | chr4_2:48790994-48791013 | None:intergenic | 35.0% |
TTTCTCAAAGAAGTTCCACT+TGG | + | chr4_2:48791000-48791019 | Msa0603870:CDS | 35.0% | |
TTCTCAAAGAAGTTCCACTT+GGG | + | chr4_2:48791001-48791020 | Msa0603870:CDS | 35.0% | |
TCAAGCACAGAAGACTAATT+TGG | + | chr4_2:48791056-48791075 | Msa0603870:CDS | 35.0% | |
AACAAAATGTCCTCTGAGTT+CGG | - | chr4_2:48791187-48791206 | None:intergenic | 35.0% | |
! | AACCAATGTTCTCAAGCTTT+TGG | + | chr4_2:48791675-48791694 | Msa0603870:intron | 35.0% |
TTCCAAAAGCTTGAGAACAT+TGG | - | chr4_2:48791680-48791699 | None:intergenic | 35.0% | |
TCCGCTTGTCAAGAAAAAAT+TGG | + | chr4_2:48792049-48792068 | Msa0603870:CDS | 35.0% | |
AATCGATCAAAAAACTCTGG+CGG | - | chr4_2:48792097-48792116 | None:intergenic | 35.0% | |
ACCTTGTGAATGGTGTAATA+GGG | - | chr4_2:48792145-48792164 | None:intergenic | 35.0% | |
TACCTTGTGAATGGTGTAAT+AGG | - | chr4_2:48792146-48792165 | None:intergenic | 35.0% | |
CTACAGTATATTGATCCAAC+AGG | - | chr4_2:48792257-48792276 | None:intergenic | 35.0% | |
TTGGATCAATATACTGTAGC+TGG | + | chr4_2:48792258-48792277 | Msa0603870:CDS | 35.0% | |
TCGATATAACATTCACCACT+CGG | - | chr4_2:48792335-48792354 | None:intergenic | 35.0% | |
ACACTATCAATCACTGAATG+AGG | + | chr4_2:48792371-48792390 | Msa0603870:CDS | 35.0% | |
ACCCTAATGTAAATCTGTCT+TGG | + | chr4_2:48792603-48792622 | Msa0603870:intron | 35.0% | |
! | GGATTCAAAGCATCTATTGT+TGG | + | chr4_2:48792642-48792661 | Msa0603870:CDS | 35.0% |
GAAAACAGTTTAAGCCAATG+TGG | - | chr4_2:48792760-48792779 | None:intergenic | 35.0% | |
GACAAGCATATCATGTAAAG+AGG | + | chr4_2:48792926-48792945 | Msa0603870:intron | 35.0% | |
ACACATATCCCAATTGTTGT+TGG | + | chr4_2:48793112-48793131 | Msa0603870:CDS | 35.0% | |
! | TTTGGGATCCAACAACAATT+GGG | - | chr4_2:48793123-48793142 | None:intergenic | 35.0% |
! | ATTTGGGATCCAACAACAAT+TGG | - | chr4_2:48793124-48793143 | None:intergenic | 35.0% |
!!! | TTCTTGTGTTTTGGTGTGTT+AGG | + | chr4_2:48793447-48793466 | Msa0603870:intron | 35.0% |
!! | GTTTTGGTGTGTTAGGAAAT+CGG | + | chr4_2:48793454-48793473 | Msa0603870:intron | 35.0% |
GGAAATCGGATCATTCTTTA+TGG | + | chr4_2:48793468-48793487 | Msa0603870:intron | 35.0% | |
CATCTTAATACCAGAACTCA+CGG | - | chr4_2:48793540-48793559 | None:intergenic | 35.0% | |
AGTTTACATTCAAGCATCCA+TGG | + | chr4_2:48793577-48793596 | Msa0603870:intron | 35.0% | |
CTGCACAAAAATTGAAGTGA+AGG | - | chr4_2:48793689-48793708 | None:intergenic | 35.0% | |
! | CTTCACTTCAATTTTTGTGC+AGG | + | chr4_2:48793687-48793706 | Msa0603870:intron | 35.0% |
TTAGTTCGTCATGTAATCCT+AGG | + | chr4_2:48793813-48793832 | Msa0603870:intron | 35.0% | |
ATCTGCATAAGTGACTTCTT+TGG | - | chr4_2:48793980-48793999 | None:intergenic | 35.0% | |
AGCATATAAATCATCACACC+AGG | - | chr4_2:48794057-48794076 | None:intergenic | 35.0% | |
! | TATGCTTCCTTTAGGTATTG+GGG | + | chr4_2:48794071-48794090 | Msa0603870:CDS | 35.0% |
AAGCTAAAACTGGACATAGT+TGG | + | chr4_2:48794100-48794119 | Msa0603870:CDS | 35.0% | |
AGCTAAAACTGGACATAGTT+GGG | + | chr4_2:48794101-48794120 | Msa0603870:CDS | 35.0% | |
GAAATCCATTTGACACTTTC+TGG | + | chr4_2:48794124-48794143 | Msa0603870:CDS | 35.0% | |
!! | AACCGGTAGGTATTTGTTTT+AGG | + | chr4_2:48794158-48794177 | Msa0603870:intron | 35.0% |
CTGCAAACTACTTTGTCATT+AGG | + | chr4_2:48794291-48794310 | Msa0603870:intron | 35.0% | |
TAAATGTCACTCGTAGGTAA+GGG | - | chr4_2:48794473-48794492 | None:intergenic | 35.0% | |
!! | ACGTTATTTCTGCAGAAAAC+TGG | + | chr4_2:48794638-48794657 | Msa0603870:intron | 35.0% |
!! | CGTTATTTCTGCAGAAAACT+GGG | + | chr4_2:48794639-48794658 | Msa0603870:intron | 35.0% |
TTCAGAATTCAATATCGCCT+TGG | - | chr4_2:48794717-48794736 | None:intergenic | 35.0% | |
TTTACTTCCCTTATCTCATG+CGG | + | chr4_2:48794772-48794791 | Msa0603870:intron | 35.0% | |
GATGATAAGAGGCAATTGAA+GGG | - | chr4_2:48795028-48795047 | None:intergenic | 35.0% | |
TGATGATAAGAGGCAATTGA+AGG | - | chr4_2:48795029-48795048 | None:intergenic | 35.0% | |
ATCAGAACAGAAGCCATAAA+AGG | + | chr4_2:48795045-48795064 | Msa0603870:CDS | 35.0% | |
! | ACACAAGAAGCTACCTTTTA+TGG | - | chr4_2:48795061-48795080 | None:intergenic | 35.0% |
CACAATAAGTAATGCAGGAA+GGG | - | chr4_2:48795117-48795136 | None:intergenic | 35.0% | |
GTAAGCACAATAAGTAATGC+AGG | - | chr4_2:48795122-48795141 | None:intergenic | 35.0% | |
TCAGTTCAAGCAATTCTCTA+CGG | + | chr4_2:48795198-48795217 | Msa0603870:CDS | 35.0% | |
CTATTGTAACTGGATGGAAT+TGG | - | chr4_2:48795306-48795325 | None:intergenic | 35.0% | |
! | AACTAGGTTGCTATTGTAAC+TGG | - | chr4_2:48795316-48795335 | None:intergenic | 35.0% |
! | TTTTACTAGCAGCACCTTTT+AGG | - | chr4_2:48795461-48795480 | None:intergenic | 35.0% |
CTAGAACCAATTAATCTTCC+TGG | + | chr4_2:48795489-48795508 | Msa0603870:CDS | 35.0% | |
GAGGAATCTACAACAATAAG+AGG | - | chr4_2:48795546-48795565 | None:intergenic | 35.0% | |
ACCACAAGAAAAACTGAAGA+AGG | - | chr4_2:48795579-48795598 | None:intergenic | 35.0% | |
! | TTCAGTTTTTCTTGTGGTAC+CGG | + | chr4_2:48795581-48795600 | Msa0603870:CDS | 35.0% |
!! | ATGGCTCTAGAAGAAAATTC+TGG | - | chr4_2:48795812-48795831 | None:intergenic | 35.0% |
TAGAGCCATTATTCAACTTC+AGG | + | chr4_2:48795823-48795842 | Msa0603870:CDS | 35.0% | |
AGAGCCATTATTCAACTTCA+GGG | + | chr4_2:48795824-48795843 | Msa0603870:CDS | 35.0% | |
TCATCCCTGAAGTTGAATAA+TGG | - | chr4_2:48795831-48795850 | None:intergenic | 35.0% | |
TGCTCTAATCAAATTTAGGG+TGG | + | chr4_2:48796036-48796055 | Msa0603870:intron | 35.0% | |
! | TCAAATTTAGGGTGGCAAAA+TGG | + | chr4_2:48796044-48796063 | Msa0603870:intron | 35.0% |
! | CAAATTTAGGGTGGCAAAAT+GGG | + | chr4_2:48796045-48796064 | Msa0603870:intron | 35.0% |
TTAATAATTGGAAGTGGTGG+TGG | + | chr4_2:48796351-48796370 | Msa0603870:intron | 35.0% | |
TGTGTGACGTGTTTGTATCA+GGG | - | chr4_2:48790105-48790124 | None:intergenic | 40.0% | |
ATGTGTGACGTGTTTGTATC+AGG | - | chr4_2:48790106-48790125 | None:intergenic | 40.0% | |
! | GCGTGGTTGTGTTACTATTA+AGG | + | chr4_2:48790747-48790766 | Msa0603870:CDS | 40.0% |
! | TCTTTGAGAAATCCAACAGG+TGG | - | chr4_2:48790991-48791010 | None:intergenic | 40.0% |
TCTCAAAGAAGTTCCACTTG+GGG | + | chr4_2:48791002-48791021 | Msa0603870:CDS | 40.0% | |
!! | ATAGGTTGATTTGGAGCTTC+AGG | + | chr4_2:48791103-48791122 | Msa0603870:CDS | 40.0% |
! | GAACTCAGAGGACATTTTGT+TGG | + | chr4_2:48791186-48791205 | Msa0603870:CDS | 40.0% |
CAATGTGATTGTAGCAACCA+GGG | + | chr4_2:48791310-48791329 | Msa0603870:intron | 40.0% | |
!!! | GCAACCAGGGTTTTAAATAG+TGG | + | chr4_2:48791323-48791342 | Msa0603870:intron | 40.0% |
! | ACGACCACTATTTAAAACCC+TGG | - | chr4_2:48791330-48791349 | None:intergenic | 40.0% |
!!! | AGGGTTTTAAATAGTGGTCG+TGG | + | chr4_2:48791329-48791348 | Msa0603870:intron | 40.0% |
TTATGTCGAAGCCCAAATCA+TGG | + | chr4_2:48791455-48791474 | Msa0603870:intron | 40.0% | |
AAGGTTCGCAACCATGATTT+GGG | - | chr4_2:48791469-48791488 | None:intergenic | 40.0% | |
AAAGGTTCGCAACCATGATT+TGG | - | chr4_2:48791470-48791489 | None:intergenic | 40.0% | |
!! | AGAACATTGGTTCCTGTTTG+GGG | - | chr4_2:48791667-48791686 | None:intergenic | 40.0% |
!! | GAGAACATTGGTTCCTGTTT+GGG | - | chr4_2:48791668-48791687 | None:intergenic | 40.0% |
!! | TGAGAACATTGGTTCCTGTT+TGG | - | chr4_2:48791669-48791688 | None:intergenic | 40.0% |
AGAAGCTGAAAATTGCAGAC+AGG | - | chr4_2:48791883-48791902 | None:intergenic | 40.0% | |
CACAAAGAATGATAGCCTGA+AGG | + | chr4_2:48791997-48792016 | Msa0603870:CDS | 40.0% | |
TAGCCTGAAGGAGAAAATGT+CGG | + | chr4_2:48792009-48792028 | Msa0603870:CDS | 40.0% | |
TCCCTATTACACCATTCACA+AGG | + | chr4_2:48792141-48792160 | Msa0603870:CDS | 40.0% | |
AGTATATTGATCCAACAGGC+CGG | - | chr4_2:48792253-48792272 | None:intergenic | 40.0% | |
AAACCCTCAAGCTCTCAAAA+TGG | + | chr4_2:48792281-48792300 | Msa0603870:CDS | 40.0% | |
!! | TCACCATTTTGAGAGCTTGA+GGG | - | chr4_2:48792287-48792306 | None:intergenic | 40.0% |
AAGCTCTCAAAATGGTGACA+TGG | + | chr4_2:48792289-48792308 | Msa0603870:CDS | 40.0% | |
TCTCAAAATGGTGACATGGA+TGG | + | chr4_2:48792293-48792312 | Msa0603870:CDS | 40.0% | |
CAATCACTGAATGAGGAAAC+TGG | + | chr4_2:48792378-48792397 | Msa0603870:CDS | 40.0% | |
GAATGATGTTATTCACCGGT+TGG | + | chr4_2:48792459-48792478 | Msa0603870:intron | 40.0% | |
TGTCTTGGTATGCTATATGC+AGG | + | chr4_2:48792618-48792637 | Msa0603870:intron | 40.0% | |
GTCTTGGTATGCTATATGCA+GGG | + | chr4_2:48792619-48792638 | Msa0603870:intron | 40.0% | |
TCTTGGTATGCTATATGCAG+GGG | + | chr4_2:48792620-48792639 | Msa0603870:intron | 40.0% | |
! | AAAAGCATGGCTTGTCGAAA+AGG | - | chr4_2:48792672-48792691 | None:intergenic | 40.0% |
!! | TTCGACAAGCCATGCTTTTT+AGG | + | chr4_2:48792673-48792692 | Msa0603870:CDS | 40.0% |
GCAAGCAATCCTAAAAAGCA+TGG | - | chr4_2:48792685-48792704 | None:intergenic | 40.0% | |
! | TTGTTGTTGGATCCCAAATG+CGG | + | chr4_2:48793125-48793144 | Msa0603870:CDS | 40.0% |
TGTGACTTCATACCGCATTT+GGG | - | chr4_2:48793140-48793159 | None:intergenic | 40.0% | |
TCACAGGTGATCCACTTTAT+AGG | + | chr4_2:48793155-48793174 | Msa0603870:CDS | 40.0% | |
CACAGGTGATCCACTTTATA+GGG | + | chr4_2:48793156-48793175 | Msa0603870:CDS | 40.0% | |
ACTGAGTACACCATTCGTTA+AGG | - | chr4_2:48794016-48794035 | None:intergenic | 40.0% | |
TTCGAAACCCCAATACCTAA+AGG | - | chr4_2:48794081-48794100 | None:intergenic | 40.0% | |
GCTAAAACTGGACATAGTTG+GGG | + | chr4_2:48794102-48794121 | Msa0603870:CDS | 40.0% | |
GTAAATGTCACTCGTAGGTA+AGG | - | chr4_2:48794474-48794493 | None:intergenic | 40.0% | |
AGAAGGTAAATGTCACTCGT+AGG | - | chr4_2:48794479-48794498 | None:intergenic | 40.0% | |
ATTTACCTTCTCACCTAGTG+AGG | + | chr4_2:48794488-48794507 | Msa0603870:CDS | 40.0% | |
AATGCAATGAGTACCTCACT+AGG | - | chr4_2:48794504-48794523 | None:intergenic | 40.0% | |
TGAACTTTCGTCTACCATCT+TGG | + | chr4_2:48794675-48794694 | Msa0603870:CDS | 40.0% | |
AGTAAATACAGACTCAGACC+TGG | - | chr4_2:48794758-48794777 | None:intergenic | 40.0% | |
AGCTTATCCGCATGAGATAA+GGG | - | chr4_2:48794782-48794801 | None:intergenic | 40.0% | |
TAGCTTATCCGCATGAGATA+AGG | - | chr4_2:48794783-48794802 | None:intergenic | 40.0% | |
GCTTCTGTTCTGATGATAAG+AGG | - | chr4_2:48795039-48795058 | None:intergenic | 40.0% | |
GCACAATAAGTAATGCAGGA+AGG | - | chr4_2:48795118-48795137 | None:intergenic | 40.0% | |
GAACTGATGCATATTCAGGT+CGG | - | chr4_2:48795185-48795204 | None:intergenic | 40.0% | |
GCTTGAACTGATGCATATTC+AGG | - | chr4_2:48795189-48795208 | None:intergenic | 40.0% | |
! | AGGTTGCTATTGTAACTGGA+TGG | - | chr4_2:48795312-48795331 | None:intergenic | 40.0% |
ATGCAAAAATCACCTGAACC+TGG | + | chr4_2:48795399-48795418 | Msa0603870:CDS | 40.0% | |
TGGTGACTTACAATCATTCC+AGG | - | chr4_2:48795510-48795529 | None:intergenic | 40.0% | |
! | ACAACAATAAGAGGTTGGTC+TGG | - | chr4_2:48795537-48795556 | None:intergenic | 40.0% |
ATTGTTGTAGATTCCTCCCT+TGG | + | chr4_2:48795549-48795568 | Msa0603870:CDS | 40.0% | |
TTGTTGTAGATTCCTCCCTT+GGG | + | chr4_2:48795550-48795569 | Msa0603870:CDS | 40.0% | |
! | GCCTTCTTCAGTTTTTCTTG+TGG | + | chr4_2:48795575-48795594 | Msa0603870:CDS | 40.0% |
! | TCAGTTTTTCTTGTGGTACC+GGG | + | chr4_2:48795582-48795601 | Msa0603870:CDS | 40.0% |
! | TGATTTTGTCCATCCAAACC+CGG | - | chr4_2:48795603-48795622 | None:intergenic | 40.0% |
GTATTGCCTTAATCCTTTCC+CGG | - | chr4_2:48795757-48795776 | None:intergenic | 40.0% | |
ATACCATCCTATCAGCTTTG+TGG | + | chr4_2:48795773-48795792 | Msa0603870:CDS | 40.0% | |
CTGATAAAAAACGTGTCCGG+TGG | - | chr4_2:48790155-48790174 | None:intergenic | 45.0% | |
GTTATGACACTTATGCTGCG+TGG | + | chr4_2:48790730-48790749 | Msa0603870:CDS | 45.0% | |
TAGTCTTCTGTGCTTGAGCA+TGG | - | chr4_2:48791053-48791072 | None:intergenic | 45.0% | |
! | GATTTGGAGCTTCAGGAAGA+CGG | + | chr4_2:48791110-48791129 | Msa0603870:CDS | 45.0% |
GAACCTAATACCGAACTCAG+AGG | + | chr4_2:48791174-48791193 | Msa0603870:CDS | 45.0% | |
TGTCCTCTGAGTTCGGTATT+AGG | - | chr4_2:48791180-48791199 | None:intergenic | 45.0% | |
GCAATGTGATTGTAGCAACC+AGG | + | chr4_2:48791309-48791328 | Msa0603870:intron | 45.0% | |
CAATGTCAAAGATCGCAACG+TGG | - | chr4_2:48791367-48791386 | None:intergenic | 45.0% | |
!! | GAACATTGGTTCCTGTTTGG+GGG | - | chr4_2:48791666-48791685 | None:intergenic | 45.0% |
! | TGAGTGCATCAGCTCTAATG+TGG | + | chr4_2:48791969-48791988 | Msa0603870:CDS | 45.0% |
! | GAGTGCATCAGCTCTAATGT+GGG | + | chr4_2:48791970-48791989 | Msa0603870:CDS | 45.0% |
CAGGCTATCATTCTTTGTGC+TGG | - | chr4_2:48791996-48792015 | None:intergenic | 45.0% | |
!! | AAAATGTCGGCTCTTGTTGC+CGG | + | chr4_2:48792022-48792041 | Msa0603870:CDS | 45.0% |
TTCTTGACAAGCGGATAGAC+CGG | - | chr4_2:48792044-48792063 | None:intergenic | 45.0% | |
CAACTTTGACAGATCTTGGC+CGG | + | chr4_2:48792231-48792250 | Msa0603870:intron | 45.0% | |
!! | GTCACCATTTTGAGAGCTTG+AGG | - | chr4_2:48792288-48792307 | None:intergenic | 45.0% |
!! | CGATTACTTTTACGACCGAG+TGG | + | chr4_2:48792317-48792336 | Msa0603870:CDS | 45.0% |
TCACTGAATGAGGAAACTGG+AGG | + | chr4_2:48792381-48792400 | Msa0603870:CDS | 45.0% | |
CTTGGTATGCTATATGCAGG+GGG | + | chr4_2:48792621-48792640 | Msa0603870:intron | 45.0% | |
! | TTTAGGATTGCTTGCCGTAC+AGG | + | chr4_2:48792690-48792709 | Msa0603870:CDS | 45.0% |
CTGTGACTTCATACCGCATT+TGG | - | chr4_2:48793141-48793160 | None:intergenic | 45.0% | |
CAAATGCGGTATGAAGTCAC+AGG | + | chr4_2:48793139-48793158 | Msa0603870:CDS | 45.0% | |
! | AGGTTGTCGGCTATTCTCTT+TGG | - | chr4_2:48793719-48793738 | None:intergenic | 45.0% |
AAGAGAATAGCCGACAACCT+TGG | + | chr4_2:48793719-48793738 | Msa0603870:CDS | 45.0% | |
CTCTGTTGTTCCAAGGTTGT+CGG | - | chr4_2:48793732-48793751 | None:intergenic | 45.0% | |
CTTCAGTCTCTGTTGTTCCA+AGG | - | chr4_2:48793739-48793758 | None:intergenic | 45.0% | |
CTTCTTTGGTCCATCTGAAC+AGG | - | chr4_2:48793966-48793985 | None:intergenic | 45.0% | |
TATGAGCGTGCCTTAACGAA+TGG | + | chr4_2:48794003-48794022 | Msa0603870:CDS | 45.0% | |
GGGGTTTCGAAAGCTAAAAC+TGG | + | chr4_2:48794090-48794109 | Msa0603870:CDS | 45.0% | |
!! | CAGCACCAGAAAGTGTCAAA+TGG | - | chr4_2:48794132-48794151 | None:intergenic | 45.0% |
! | TTTTGTCAATCACGCGACAG+TGG | + | chr4_2:48794983-48795002 | Msa0603870:CDS | 45.0% |
TACGGACCTTATCTTCTTGC+CGG | + | chr4_2:48795216-48795235 | Msa0603870:CDS | 45.0% | |
TTTGATGTCCCAATTTCCGG+TGG | - | chr4_2:48795247-48795266 | None:intergenic | 45.0% | |
! | GGCTTTGATGTCCCAATTTC+CGG | - | chr4_2:48795250-48795269 | None:intergenic | 45.0% |
GGAAATTGGGACATCAAAGC+CGG | + | chr4_2:48795249-48795268 | Msa0603870:CDS | 45.0% | |
TGCAACAGCTTTGCTAGAAC+CGG | - | chr4_2:48795271-48795290 | None:intergenic | 45.0% | |
!! | TAAGAGGTTGGTCTGGTTCT+TGG | - | chr4_2:48795530-48795549 | None:intergenic | 45.0% |
TGTTGTAGATTCCTCCCTTG+GGG | + | chr4_2:48795551-48795570 | Msa0603870:CDS | 45.0% | |
!! | TTTTCTTGTGGTACCGGGTT+TGG | + | chr4_2:48795587-48795606 | Msa0603870:CDS | 45.0% |
GTGTATAGCGATATGAGCTC+TGG | + | chr4_2:48795663-48795682 | Msa0603870:CDS | 45.0% | |
!! | TGCAAGTCTGATTCTGAAGC+TGG | + | chr4_2:48795705-48795724 | Msa0603870:CDS | 45.0% |
CAAGCAGCAAGTTTCGTTTC+CGG | + | chr4_2:48795735-48795754 | Msa0603870:CDS | 45.0% | |
AAGCAGCAAGTTTCGTTTCC+GGG | + | chr4_2:48795736-48795755 | Msa0603870:CDS | 45.0% | |
TCGTTTCCGGGAAAGGATTA+AGG | + | chr4_2:48795748-48795767 | Msa0603870:CDS | 45.0% | |
TAGCCACAAAGCTGATAGGA+TGG | - | chr4_2:48795779-48795798 | None:intergenic | 45.0% | |
CCTTTAGCCACAAAGCTGAT+AGG | - | chr4_2:48795783-48795802 | None:intergenic | 45.0% | |
! | CCTATCAGCTTTGTGGCTAA+AGG | + | chr4_2:48795780-48795799 | Msa0603870:CDS | 45.0% |
! | ATCAGCTTTGTGGCTAAAGG+AGG | + | chr4_2:48795783-48795802 | Msa0603870:CDS | 45.0% |
!!! | AAAATTTCAAAAATAATTTT+GGG | - | chr4_2:48793048-48793067 | None:intergenic | 5.0% |
!! | TTTACTTATTTATTAATAAT+TGG | + | chr4_2:48796339-48796358 | Msa0603870:intron | 5.0% |
CCTCTGATGAAAGACGTGTC+TGG | - | chr4_2:48790068-48790087 | None:intergenic | 50.0% | |
CCAGACACGTCTTTCATCAG+AGG | + | chr4_2:48790065-48790084 | Msa0603870:five_prime_UTR | 50.0% | |
CGAAACGTATGCGACTGAGT+CGG | - | chr4_2:48790787-48790806 | None:intergenic | 50.0% | |
CGACTCAGTCGCATACGTTT+CGG | + | chr4_2:48790785-48790804 | Msa0603870:CDS | 50.0% | |
ACCGACCGATGAATCTGCTT+GGG | + | chr4_2:48790873-48790892 | Msa0603870:CDS | 50.0% | |
AGCTGCCCAAGCAGATTCAT+CGG | - | chr4_2:48790881-48790900 | None:intergenic | 50.0% | |
GGTGTGTTTAAGCCACCTGT+TGG | + | chr4_2:48790976-48790995 | Msa0603870:CDS | 50.0% | |
AAGTTCCACTTGGGGATGTG+AGG | + | chr4_2:48791010-48791029 | Msa0603870:CDS | 50.0% | |
TGGTACACCGTATGGAGGAT+GGG | + | chr4_2:48791149-48791168 | Msa0603870:CDS | 50.0% | |
AGTGGTCGTGGTAACAGTTG+TGG | + | chr4_2:48791341-48791360 | Msa0603870:intron | 50.0% | |
! | ATTGGTTCCTGTTTGGGGGA+GGG | - | chr4_2:48791662-48791681 | None:intergenic | 50.0% |
! | GAGCCGACATTTTCTCCTTC+AGG | - | chr4_2:48792015-48792034 | None:intergenic | 50.0% |
GTGTAATAGGGAGCCCAAAC+AGG | - | chr4_2:48792133-48792152 | None:intergenic | 50.0% | |
TCTTCTCACAGCTATGCGAC+TGG | + | chr4_2:48793502-48793521 | Msa0603870:CDS | 50.0% | |
TTTCACGGCACCTGTTCAGA+TGG | + | chr4_2:48793953-48793972 | Msa0603870:CDS | 50.0% | |
!! | GACACTTTCTGGTGCTGCTA+CGG | + | chr4_2:48794135-48794154 | Msa0603870:CDS | 50.0% |
GCTCACTCAGACAGTTGTTC+CGG | + | chr4_2:48794434-48794453 | Msa0603870:CDS | 50.0% | |
AGTTGTTCCGGCTGCTTCAT+CGG | + | chr4_2:48794446-48794465 | Msa0603870:CDS | 50.0% | |
GAGTACCTCACTAGGTGAGA+AGG | - | chr4_2:48794496-48794515 | None:intergenic | 50.0% | |
ACTTTATCTTTGCCCGCTCC+AGG | + | chr4_2:48794737-48794756 | Msa0603870:CDS | 50.0% | |
ATACAGACTCAGACCTGGAG+CGG | - | chr4_2:48794753-48794772 | None:intergenic | 50.0% | |
TTGAAGGGTCAGCTTGTCAC+CGG | - | chr4_2:48795013-48795032 | None:intergenic | 50.0% | |
GTGTGACCGGCAAGAAGATA+AGG | - | chr4_2:48795225-48795244 | None:intergenic | 50.0% | |
CTAGCAAAGCTGTTGCAGAC+TGG | + | chr4_2:48795274-48795293 | Msa0603870:CDS | 50.0% | |
GTTGTAGATTCCTCCCTTGG+GGG | + | chr4_2:48795552-48795571 | Msa0603870:CDS | 50.0% | |
TTGTAGATTCCTCCCTTGGG+GGG | + | chr4_2:48795553-48795572 | Msa0603870:CDS | 50.0% | |
! | AGCGATATGAGCTCTGGTTC+AGG | + | chr4_2:48795669-48795688 | Msa0603870:CDS | 50.0% |
CTGGTTCAGGAGTTAAGCTC+AGG | + | chr4_2:48795682-48795701 | Msa0603870:CDS | 50.0% | |
!! | CGGAAACGAAACTTGCTGCT+TGG | - | chr4_2:48795737-48795756 | None:intergenic | 50.0% |
GCAAGTTTCGTTTCCGGGAA+AGG | + | chr4_2:48795741-48795760 | Msa0603870:CDS | 50.0% | |
GGGTGGCAAAATGGGATGAT+TGG | + | chr4_2:48796053-48796072 | Msa0603870:intron | 50.0% | |
!! | AATTGGAAGTGGTGGTGGTC+AGG | + | chr4_2:48796356-48796375 | Msa0603870:intron | 50.0% |
!! | ATTGGAAGTGGTGGTGGTCA+GGG | + | chr4_2:48796357-48796376 | Msa0603870:intron | 50.0% |
GGTGATCGCTATCCTATGTC+TGG | + | chr4_2:48796421-48796440 | Msa0603870:three_prime_UTR | 50.0% | |
GATCGCTATCCTATGTCTGG+TGG | + | chr4_2:48796424-48796443 | Msa0603870:three_prime_UTR | 50.0% | |
CACCGACCGATGAATCTGCT+TGG | + | chr4_2:48790872-48790891 | Msa0603870:CDS | 55.0% | |
GCCCAAGCAGATTCATCGGT+CGG | - | chr4_2:48790877-48790896 | None:intergenic | 55.0% | |
CTTGGGCAGCTTTGCTTCCA+AGG | + | chr4_2:48790890-48790909 | Msa0603870:CDS | 55.0% | |
AGCAACCTCACATCCCCAAG+TGG | - | chr4_2:48791018-48791037 | None:intergenic | 55.0% | |
GGGGATGTGAGGTTGCTTGA+AGG | + | chr4_2:48791021-48791040 | Msa0603870:CDS | 55.0% | |
CCATACGGTGTACCAGGAGT+CGG | - | chr4_2:48791144-48791163 | None:intergenic | 55.0% | |
ACTCCTGGTACACCGTATGG+AGG | + | chr4_2:48791144-48791163 | Msa0603870:CDS | 55.0% | |
CATCCTCCATACGGTGTACC+AGG | - | chr4_2:48791150-48791169 | None:intergenic | 55.0% | |
CTGGTACACCGTATGGAGGA+TGG | + | chr4_2:48791148-48791167 | Msa0603870:CDS | 55.0% | |
TACACCGTATGGAGGATGGG+AGG | + | chr4_2:48791152-48791171 | Msa0603870:CDS | 55.0% | |
GGTTCCTCCCATCCTCCATA+CGG | - | chr4_2:48791159-48791178 | None:intergenic | 55.0% | |
TTGGTTCCTGTTTGGGGGAG+GGG | - | chr4_2:48791661-48791680 | None:intergenic | 55.0% | |
!! | CATTGGTTCCTGTTTGGGGG+AGG | - | chr4_2:48791663-48791682 | None:intergenic | 55.0% |
TCTCACAGCTATGCGACTGG+AGG | + | chr4_2:48793505-48793524 | Msa0603870:CDS | 55.0% | |
CTCACAGCTATGCGACTGGA+GGG | + | chr4_2:48793506-48793525 | Msa0603870:CDS | 55.0% | |
CTATGCGACTGGAGGGACAT+CGG | + | chr4_2:48793513-48793532 | Msa0603870:CDS | 55.0% | |
!! | TTCTGGTGCTGCTACGGAAC+CGG | + | chr4_2:48794141-48794160 | Msa0603870:CDS | 55.0% |
TAAGGGTCCGATGAAGCAGC+CGG | - | chr4_2:48794456-48794475 | None:intergenic | 55.0% | |
CCATCAGCGTGAGTCCAAGA+TGG | - | chr4_2:48794692-48794711 | None:intergenic | 55.0% | |
CCATCTTGGACTCACGCTGA+TGG | + | chr4_2:48794689-48794708 | Msa0603870:CDS | 55.0% | |
TACAGACTCAGACCTGGAGC+GGG | - | chr4_2:48794752-48794771 | None:intergenic | 55.0% | |
CCAATTTCCGGTGGTGTGAC+CGG | - | chr4_2:48795238-48795257 | None:intergenic | 55.0% | |
CGGTCACACCACCGGAAATT+GGG | + | chr4_2:48795236-48795255 | Msa0603870:CDS | 55.0% | |
TGAAGAGCGACATCAGTGCC+AGG | - | chr4_2:48795420-48795439 | None:intergenic | 55.0% | |
AACTGAAGAAGGCCCCCCAA+GGG | - | chr4_2:48795568-48795587 | None:intergenic | 55.0% | |
AAACTGAAGAAGGCCCCCCA+AGG | - | chr4_2:48795569-48795588 | None:intergenic | 55.0% | |
! | CTTGTGGTACCGGGTTTGGA+TGG | + | chr4_2:48795591-48795610 | Msa0603870:CDS | 55.0% |
ACAGCTGCTGACCACAACTG+CGG | - | chr4_2:48796396-48796415 | None:intergenic | 55.0% | |
AGTTGTGGTCAGCAGCTGTG+TGG | + | chr4_2:48796397-48796416 | Msa0603870:three_prime_UTR | 55.0% | |
CGCTATCCTATGTCTGGTGG+TGG | + | chr4_2:48796427-48796446 | Msa0603870:three_prime_UTR | 55.0% | |
TGGAGCTTCAGGAAGACGGC+TGG | + | chr4_2:48791114-48791133 | Msa0603870:CDS | 60.0% | |
!! | ACGGCTGGTTTACCGACTCC+TGG | + | chr4_2:48791129-48791148 | Msa0603870:CDS | 60.0% |
CCGACTCCTGGTACACCGTA+TGG | + | chr4_2:48791141-48791160 | Msa0603870:CDS | 60.0% | |
TACCTACCCCTCCCCCAAAC+AGG | + | chr4_2:48791652-48791671 | Msa0603870:intron | 60.0% | |
TTCCTGTTTGGGGGAGGGGT+AGG | - | chr4_2:48791657-48791676 | None:intergenic | 60.0% | |
ACAGATCTTGGCCGGCCTGT+TGG | + | chr4_2:48792239-48792258 | Msa0603870:intron | 60.0% | |
GGACATCGGTCCGTGAGTTC+TGG | + | chr4_2:48793527-48793546 | Msa0603870:CDS | 60.0% | |
! | GACTCACGCTGATGGTGCCA+AGG | + | chr4_2:48794697-48794716 | Msa0603870:CDS | 60.0% |
ATCACGCGACAGTGGAGTGC+CGG | + | chr4_2:48794991-48795010 | Msa0603870:CDS | 60.0% | |
CTTCTTGCCGGTCACACCAC+CGG | + | chr4_2:48795228-48795247 | Msa0603870:CDS | 60.0% | |
CCGGTCACACCACCGGAAAT+TGG | + | chr4_2:48795235-48795254 | Msa0603870:CDS | 60.0% | |
GCGACATCAGTGCCAGGTTC+AGG | - | chr4_2:48795414-48795433 | None:intergenic | 60.0% | |
CAGCTGCTGACCACAACTGC+GGG | - | chr4_2:48796395-48796414 | None:intergenic | 60.0% | |
TGTGGTCAGCAGCTGTGTGG+TGG | + | chr4_2:48796400-48796419 | Msa0603870:three_prime_UTR | 60.0% | |
!! | GGTGCTGCTACGGAACCGGT+AGG | + | chr4_2:48794145-48794164 | Msa0603870:intron | 65.0% |
TGAAGAAGGCCCCCCAAGGG+AGG | - | chr4_2:48795565-48795584 | None:intergenic | 65.0% | |
! | GGTGGTGGTCAGGGAGCTGC+TGG | + | chr4_2:48796366-48796385 | Msa0603870:intron | 70.0% |
GGTGGTCAGGGAGCTGCTGG+CGG | + | chr4_2:48796369-48796388 | Msa0603870:intron | 70.0% | |
CTGCTGGCGGCCCGCAGTTG+TGG | + | chr4_2:48796382-48796401 | Msa0603870:three_prime_UTR | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 48790039 | 48796452 | 48790039 | ID=Msa0603870;Name=Msa0603870 |
chr4_2 | mRNA | 48790039 | 48796452 | 48790039 | ID=Msa0603870-mRNA-1;Parent=Msa0603870;Name=Msa0603870-mRNA-1;_AED=0.10;_eAED=0.10;_QI=545|1|1|1|0.84|0.71|14|126|847 |
chr4_2 | exon | 48790039 | 48790579 | 48790039 | ID=Msa0603870-mRNA-1:exon:11242;Parent=Msa0603870-mRNA-1 |
chr4_2 | exon | 48790699 | 48791207 | 48790699 | ID=Msa0603870-mRNA-1:exon:11243;Parent=Msa0603870-mRNA-1 |
chr4_2 | exon | 48791960 | 48792162 | 48791960 | ID=Msa0603870-mRNA-1:exon:11244;Parent=Msa0603870-mRNA-1 |
chr4_2 | exon | 48792243 | 48792440 | 48792243 | ID=Msa0603870-mRNA-1:exon:11245;Parent=Msa0603870-mRNA-1 |
chr4_2 | exon | 48792640 | 48792711 | 48792640 | ID=Msa0603870-mRNA-1:exon:11246;Parent=Msa0603870-mRNA-1 |
chr4_2 | exon | 48793082 | 48793177 | 48793082 | ID=Msa0603870-mRNA-1:exon:11247;Parent=Msa0603870-mRNA-1 |
chr4_2 | exon | 48793469 | 48793548 | 48793469 | ID=Msa0603870-mRNA-1:exon:11248;Parent=Msa0603870-mRNA-1 |
chr4_2 | exon | 48793709 | 48793787 | 48793709 | ID=Msa0603870-mRNA-1:exon:11249;Parent=Msa0603870-mRNA-1 |
chr4_2 | exon | 48793952 | 48794162 | 48793952 | ID=Msa0603870-mRNA-1:exon:11250;Parent=Msa0603870-mRNA-1 |
chr4_2 | exon | 48794313 | 48794509 | 48794313 | ID=Msa0603870-mRNA-1:exon:11251;Parent=Msa0603870-mRNA-1 |
chr4_2 | exon | 48794653 | 48794758 | 48794653 | ID=Msa0603870-mRNA-1:exon:11252;Parent=Msa0603870-mRNA-1 |
chr4_2 | exon | 48794977 | 48795066 | 48794977 | ID=Msa0603870-mRNA-1:exon:11253;Parent=Msa0603870-mRNA-1 |
chr4_2 | exon | 48795178 | 48795935 | 48795178 | ID=Msa0603870-mRNA-1:exon:11254;Parent=Msa0603870-mRNA-1 |
chr4_2 | exon | 48796378 | 48796452 | 48796378 | ID=Msa0603870-mRNA-1:exon:11255;Parent=Msa0603870-mRNA-1 |
chr4_2 | five_prime_UTR | 48790039 | 48790579 | 48790039 | ID=Msa0603870-mRNA-1:five_prime_utr;Parent=Msa0603870-mRNA-1 |
chr4_2 | five_prime_UTR | 48790699 | 48790702 | 48790699 | ID=Msa0603870-mRNA-1:five_prime_utr;Parent=Msa0603870-mRNA-1 |
chr4_2 | CDS | 48790703 | 48791207 | 48790703 | ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1 |
chr4_2 | CDS | 48791960 | 48792162 | 48791960 | ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1 |
chr4_2 | CDS | 48792243 | 48792440 | 48792243 | ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1 |
chr4_2 | CDS | 48792640 | 48792711 | 48792640 | ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1 |
chr4_2 | CDS | 48793082 | 48793177 | 48793082 | ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1 |
chr4_2 | CDS | 48793469 | 48793548 | 48793469 | ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1 |
chr4_2 | CDS | 48793709 | 48793787 | 48793709 | ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1 |
chr4_2 | CDS | 48793952 | 48794162 | 48793952 | ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1 |
chr4_2 | CDS | 48794313 | 48794509 | 48794313 | ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1 |
chr4_2 | CDS | 48794653 | 48794758 | 48794653 | ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1 |
chr4_2 | CDS | 48794977 | 48795066 | 48794977 | ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1 |
chr4_2 | CDS | 48795178 | 48795884 | 48795178 | ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1 |
chr4_2 | three_prime_UTR | 48795885 | 48795935 | 48795885 | ID=Msa0603870-mRNA-1:three_prime_utr;Parent=Msa0603870-mRNA-1 |
chr4_2 | three_prime_UTR | 48796378 | 48796452 | 48796378 | ID=Msa0603870-mRNA-1:three_prime_utr;Parent=Msa0603870-mRNA-1 |
Gene Sequence |
Protein sequence |