AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0603870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0603870 MtrunA17_Chr4g0032781 96.930 847 26 0 1 847 1 847 0.0 1716
Msa0603870 MtrunA17_Chr4g0032831 85.106 846 124 1 1 846 1 844 0.0 1509
Msa0603870 MtrunA17_Chr4g0032821 78.795 863 165 4 1 847 2 862 0.0 1415
Msa0603870 MtrunA17_Chr4g0032881 81.443 97 18 0 750 846 23 119 1.45e-49 170
Msa0603870 MtrunA17_Chr4g0032871 76.596 47 11 0 191 237 1 47 2.74e-19 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0603870 AT5G12950.1 64.218 844 275 12 22 846 25 860 0.0 1092
Msa0603870 AT5G12960.1 61.298 863 308 10 3 847 11 865 0.0 1067

Find 236 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATCCATTTGACACTTTC+TGG 0.104833 4_2:+48794124 Msa0603870:CDS
GGAAATCGGATCATTCTTTA+TGG 0.145770 4_2:+48793468 Msa0603870:intron
GTATAGGAAAATTAAGAATT+TGG 0.186644 4_2:+48790954 Msa0603870:CDS
CTGTTAACTTTACTCAATTA+AGG 0.194807 4_2:+48790390 Msa0603870:five_prime_UTR
GGCTTTGATGTCCCAATTTC+CGG 0.200674 4_2:-48795247 None:intergenic
ACATATCAAGCTCATTTAAT+TGG 0.209264 4_2:+48794394 Msa0603870:CDS
ATATGCTTCCTTTAGGTATT+GGG 0.214681 4_2:+48794070 Msa0603870:CDS
ATCATTCCAGGAAGATTAAT+TGG 0.217671 4_2:-48795495 None:intergenic
AGCTCATTTAATTGGAAATC+TGG 0.222087 4_2:+48794402 Msa0603870:CDS
TTAGTTGAGATATAAATTTC+TGG 0.225631 4_2:+48790513 Msa0603870:five_prime_UTR
ATATCTCAACTAAATTAAAT+TGG 0.240773 4_2:-48790503 None:intergenic
TAAACTTTAAGAGATTAATT+TGG 0.240869 4_2:-48790447 None:intergenic
CCGGTCACACCACCGGAAAT+TGG 0.260920 4_2:+48795235 Msa0603870:CDS
TTGAAAATATTCAACCTGTT+TGG 0.271856 4_2:+48792116 Msa0603870:CDS
ACCTTTAGACTTATCCTAAA+AGG 0.276916 4_2:+48795444 Msa0603870:CDS
TGAAAATATTCAACCTGTTT+GGG 0.277164 4_2:+48792117 Msa0603870:CDS
TAGAGCCATTATTCAACTTC+AGG 0.281241 4_2:+48795823 Msa0603870:CDS
GCTTGAACTGATGCATATTC+AGG 0.284821 4_2:-48795186 None:intergenic
TCGTTTCCGGGAAAGGATTA+AGG 0.286337 4_2:+48795748 Msa0603870:CDS
ACGTTATTTCTGCAGAAAAC+TGG 0.288118 4_2:+48794638 Msa0603870:intron
GCGTGGTTGTGTTACTATTA+AGG 0.293026 4_2:+48790747 Msa0603870:CDS
CAAGCAGCAAGTTTCGTTTC+CGG 0.293184 4_2:+48795735 Msa0603870:CDS
TAAGAGGTTGGTCTGGTTCT+TGG 0.293356 4_2:-48795527 None:intergenic
TGTCCTCTGAGTTCGGTATT+AGG 0.297824 4_2:-48791177 None:intergenic
TATATGCTTCCTTTAGGTAT+TGG 0.298978 4_2:+48794069 Msa0603870:CDS
ATGATTTATATGCTTCCTTT+AGG 0.300957 4_2:+48794063 Msa0603870:CDS
ATGTGTGACGTGTTTGTATC+AGG 0.302817 4_2:-48790103 None:intergenic
TCACAGGTGATCCACTTTAT+AGG 0.306193 4_2:+48793155 Msa0603870:CDS
CTAGAACCAATTAATCTTCC+TGG 0.308600 4_2:+48795489 Msa0603870:CDS
TGTTTATTTCAACATTCTAT+TGG 0.309966 4_2:+48795894 Msa0603870:three_prime_UTR
AAGCAGCAAGTTTCGTTTCC+GGG 0.315271 4_2:+48795736 Msa0603870:CDS
TACCTTGTGAATGGTGTAAT+AGG 0.317036 4_2:-48792143 None:intergenic
AGGTTGTCGGCTATTCTCTT+TGG 0.319281 4_2:-48793716 None:intergenic
ATAGGTTGATTTGGAGCTTC+AGG 0.320627 4_2:+48791103 Msa0603870:CDS
ATGATTGGGCTTTAATGTAT+AGG 0.322038 4_2:+48790938 Msa0603870:CDS
ATTGTTGTAGATTCCTCCCT+TGG 0.329005 4_2:+48795549 Msa0603870:CDS
TATAGGAAAATTAAGAATTT+GGG 0.335217 4_2:+48790955 Msa0603870:CDS
CTGTGACTTCATACCGCATT+TGG 0.335761 4_2:-48793138 None:intergenic
AGCTAAAACTGGACATAGTT+GGG 0.338057 4_2:+48794101 Msa0603870:CDS
AACTAGGTTGCTATTGTAAC+TGG 0.344167 4_2:-48795313 None:intergenic
ATGGCTCTAGAAGAAAATTC+TGG 0.347474 4_2:-48795809 None:intergenic
ATCAGAACAGAAGCCATAAA+AGG 0.349305 4_2:+48795045 Msa0603870:CDS
TACGGACCTTATCTTCTTGC+CGG 0.352390 4_2:+48795216 Msa0603870:CDS
ATTTGGGATCCAACAACAAT+TGG 0.357335 4_2:-48793121 None:intergenic
TCAAGCACAGAAGACTAATT+TGG 0.361258 4_2:+48791056 Msa0603870:CDS
ACAAGAAAACAAAGATGATT+TGG 0.370442 4_2:-48790278 None:intergenic
ATCTGCATAAGTGACTTCTT+TGG 0.370767 4_2:-48793977 None:intergenic
CAGGCTATCATTCTTTGTGC+TGG 0.370963 4_2:-48791993 None:intergenic
TTGTTGTAGATTCCTCCCTT+GGG 0.372103 4_2:+48795550 Msa0603870:CDS
CACAGGTGATCCACTTTATA+GGG 0.372586 4_2:+48793156 Msa0603870:CDS
CTTGGGCAGCTTTGCTTCCA+AGG 0.376140 4_2:+48790890 Msa0603870:CDS
GGACATCGGTCCGTGAGTTC+TGG 0.377326 4_2:+48793527 Msa0603870:CDS
GTATTGCCTTAATCCTTTCC+CGG 0.380643 4_2:-48795754 None:intergenic
CGACTCAGTCGCATACGTTT+CGG 0.382727 4_2:+48790785 Msa0603870:CDS
CTTCTTTGGTCCATCTGAAC+AGG 0.382755 4_2:-48793963 None:intergenic
CAATCACTGAATGAGGAAAC+TGG 0.384947 4_2:+48792378 Msa0603870:CDS
GCGACATCAGTGCCAGGTTC+AGG 0.388376 4_2:-48795411 None:intergenic
CTGCTGGCGGCCCGCAGTTG+TGG 0.388561 4_2:+48796382 Msa0603870:three_prime_UTR
CGGTCACACCACCGGAAATT+GGG 0.391542 4_2:+48795236 Msa0603870:CDS
ACAGTTTATTTCAACATTCA+AGG 0.392877 4_2:+48795858 Msa0603870:CDS
TATAGAGAAGATATAATAGA+AGG 0.393350 4_2:-48790365 None:intergenic
CAGAAGAAAACCAACATGAT+TGG 0.394758 4_2:+48790923 Msa0603870:CDS
AAACCCTCAAGCTCTCAAAA+TGG 0.394868 4_2:+48792281 Msa0603870:CDS
GCTCACTCAGACAGTTGTTC+CGG 0.394905 4_2:+48794434 Msa0603870:CDS
TGAACTTTCGTCTACCATCT+TGG 0.395997 4_2:+48794675 Msa0603870:CDS
AAAATGTCGGCTCTTGTTGC+CGG 0.398839 4_2:+48792022 Msa0603870:CDS
TAGATGTTGATAGGTTGATT+TGG 0.399133 4_2:+48791094 Msa0603870:CDS
TGGTGACTTACAATCATTCC+AGG 0.404014 4_2:-48795507 None:intergenic
TGCAACAGCTTTGCTAGAAC+CGG 0.404572 4_2:-48795268 None:intergenic
TTTAGGATTGCTTGCCGTAC+AGG 0.408367 4_2:+48792690 Msa0603870:CDS
CTCTGTTGTTCCAAGGTTGT+CGG 0.409031 4_2:-48793729 None:intergenic
TTTAATTCAAGTTTGTTCTC+TGG 0.409074 4_2:+48790558 Msa0603870:five_prime_UTR
AGATATAATAGAAGGTAGAA+AGG 0.409773 4_2:-48790357 None:intergenic
ACAGATCTTGGCCGGCCTGT+TGG 0.410146 4_2:+48792239 Msa0603870:intron
AACAAAATGTCCTCTGAGTT+CGG 0.411412 4_2:-48791184 None:intergenic
CCTTTAGCCACAAAGCTGAT+AGG 0.414243 4_2:-48795780 None:intergenic
TGTTGATGTTAGATGTTGAT+AGG 0.416075 4_2:+48791085 Msa0603870:CDS
ACACATATCCCAATTGTTGT+TGG 0.423041 4_2:+48793112 Msa0603870:CDS
AGCGATATGAGCTCTGGTTC+AGG 0.427962 4_2:+48795669 Msa0603870:CDS
CTTCAGTCTCTGTTGTTCCA+AGG 0.428325 4_2:-48793736 None:intergenic
TAGTTGAGATATAAATTTCT+GGG 0.430452 4_2:+48790514 Msa0603870:five_prime_UTR
TTCTGGTGCTGCTACGGAAC+CGG 0.430538 4_2:+48794141 Msa0603870:CDS
GATAATGATTTCAGGTTTCA+CGG 0.431125 4_2:+48793938 Msa0603870:intron
GCTCATTTAATTGGAAATCT+GGG 0.434941 4_2:+48794403 Msa0603870:CDS
TGTGACTTCATACCGCATTT+GGG 0.435092 4_2:-48793137 None:intergenic
AAGCTAAAACTGGACATAGT+TGG 0.435141 4_2:+48794100 Msa0603870:CDS
GGTGGTGGTCAGGGAGCTGC+TGG 0.436160 4_2:+48796366 Msa0603870:intron
GTGTAATAGGGAGCCCAAAC+AGG 0.437125 4_2:-48792130 None:intergenic
ACTTTATCTTTGCCCGCTCC+AGG 0.438187 4_2:+48794737 Msa0603870:CDS
TTGGATCAATATACTGTAGC+TGG 0.439839 4_2:+48792258 Msa0603870:CDS
TGCAAGTCTGATTCTGAAGC+TGG 0.441014 4_2:+48795705 Msa0603870:CDS
ACCTTGTGAATGGTGTAATA+GGG 0.442206 4_2:-48792142 None:intergenic
AATTGAATCATTCTCAAAGC+TGG 0.442887 4_2:+48794314 Msa0603870:CDS
GATATAATAGAAGGTAGAAA+GGG 0.444373 4_2:-48790356 None:intergenic
GGGGTTTCGAAAGCTAAAAC+TGG 0.448832 4_2:+48794090 Msa0603870:CDS
CTATTGTAACTGGATGGAAT+TGG 0.451167 4_2:-48795303 None:intergenic
GTAAATGTCACTCGTAGGTA+AGG 0.451881 4_2:-48794471 None:intergenic
CCAATTTCCGGTGGTGTGAC+CGG 0.453525 4_2:-48795235 None:intergenic
GACACTTTCTGGTGCTGCTA+CGG 0.454466 4_2:+48794135 Msa0603870:CDS
GGGGATGTGAGGTTGCTTGA+AGG 0.459919 4_2:+48791021 Msa0603870:CDS
AAAAGCATGGCTTGTCGAAA+AGG 0.460007 4_2:-48792669 None:intergenic
CATCCTCCATACGGTGTACC+AGG 0.461140 4_2:-48791147 None:intergenic
AGAAGAAAACCAACATGATT+GGG 0.463290 4_2:+48790924 Msa0603870:CDS
TCATCCCTGAAGTTGAATAA+TGG 0.464760 4_2:-48795828 None:intergenic
CGGAAACGAAACTTGCTGCT+TGG 0.466133 4_2:-48795734 None:intergenic
CGTTATTTCTGCAGAAAACT+GGG 0.466638 4_2:+48794639 Msa0603870:intron
GCAAGTTTCGTTTCCGGGAA+AGG 0.466962 4_2:+48795741 Msa0603870:CDS
GAGGAATCTACAACAATAAG+AGG 0.468907 4_2:-48795543 None:intergenic
CACCGACCGATGAATCTGCT+TGG 0.469681 4_2:+48790872 Msa0603870:CDS
AGTTGTTCCGGCTGCTTCAT+CGG 0.473362 4_2:+48794446 Msa0603870:CDS
ATCCTATGTCTGGTGGTGGC+AGG 0.474922 4_2:+48796431 Msa0603870:three_prime_UTR
TTCTTGACAAGCGGATAGAC+CGG 0.475274 4_2:-48792041 None:intergenic
GACAAATAATGTAAGGACTA+AGG 0.480765 4_2:-48790237 None:intergenic
CCTATCAGCTTTGTGGCTAA+AGG 0.481539 4_2:+48795780 Msa0603870:CDS
TTTGGGATCCAACAACAATT+GGG 0.482174 4_2:-48793120 None:intergenic
AAATAACTCACCCTATAAAG+TGG 0.483711 4_2:-48793166 None:intergenic
TCTTCTGATAAGATCTTCCT+TGG 0.488745 4_2:-48790907 None:intergenic
GGATTCAAAGCATCTATTGT+TGG 0.489543 4_2:+48792642 Msa0603870:CDS
AGAGCCATTATTCAACTTCA+GGG 0.490418 4_2:+48795824 Msa0603870:CDS
GGTGATCGCTATCCTATGTC+TGG 0.491309 4_2:+48796421 Msa0603870:three_prime_UTR
GCTTCTGTTCTGATGATAAG+AGG 0.491841 4_2:-48795036 None:intergenic
GATATGTGACAAATAATGTA+AGG 0.492154 4_2:-48790244 None:intergenic
AATTTGGAGGTTCTAATTGA+AGG 0.492292 4_2:-48790431 None:intergenic
TATGCTTCCTTTAGGTATTG+GGG 0.493468 4_2:+48794071 Msa0603870:CDS
ACTTTAAGAGATTAATTTGG+AGG 0.498751 4_2:-48790444 None:intergenic
ATACCATCCTATCAGCTTTG+TGG 0.498984 4_2:+48795773 Msa0603870:CDS
CTACAGTATATTGATCCAAC+AGG 0.499586 4_2:-48792254 None:intergenic
TGAGATATAAATTTCTGGGC+TGG 0.502981 4_2:+48790518 Msa0603870:five_prime_UTR
TTCAGAATTCAATATCGCCT+TGG 0.504238 4_2:-48794714 None:intergenic
CACAACTTATAATATGTTGA+AGG 0.508895 4_2:+48793766 Msa0603870:CDS
ACTGAGTACACCATTCGTTA+AGG 0.509378 4_2:-48794013 None:intergenic
CAGCACCAGAAAGTGTCAAA+TGG 0.510223 4_2:-48794129 None:intergenic
CTAGCAAAGCTGTTGCAGAC+TGG 0.510603 4_2:+48795274 Msa0603870:CDS
CAACTTTGACAGATCTTGGC+CGG 0.513374 4_2:+48792231 Msa0603870:intron
TAGTCTTCTGTGCTTGAGCA+TGG 0.515586 4_2:-48791050 None:intergenic
ACCGACCGATGAATCTGCTT+GGG 0.516084 4_2:+48790873 Msa0603870:CDS
CTGGTACACCGTATGGAGGA+TGG 0.521019 4_2:+48791148 Msa0603870:CDS
AATCTACAACAATAAGAGGT+TGG 0.521360 4_2:-48795539 None:intergenic
CAGCTGCTGACCACAACTGC+GGG 0.523365 4_2:-48796392 None:intergenic
CTTGTGGTACCGGGTTTGGA+TGG 0.523740 4_2:+48795591 Msa0603870:CDS
ATTCAAAGAGGAACAGATCC+TGG 0.523997 4_2:+48794036 Msa0603870:CDS
TGATGATAAGAGGCAATTGA+AGG 0.524062 4_2:-48795026 None:intergenic
TTTCACGGCACCTGTTCAGA+TGG 0.524957 4_2:+48793953 Msa0603870:CDS
TTCTCAAAGAAGTTCCACTT+GGG 0.526593 4_2:+48791001 Msa0603870:CDS
CTGGTTCAGGAGTTAAGCTC+AGG 0.527444 4_2:+48795682 Msa0603870:CDS
ACAACAATAAGAGGTTGGTC+TGG 0.530198 4_2:-48795534 None:intergenic
GACTCACGCTGATGGTGCCA+AGG 0.531665 4_2:+48794697 Msa0603870:CDS
ATCACGCGACAGTGGAGTGC+CGG 0.532836 4_2:+48794991 Msa0603870:CDS
GTGTGACCGGCAAGAAGATA+AGG 0.534253 4_2:-48795222 None:intergenic
GGTGGTCAGGGAGCTGCTGG+CGG 0.535422 4_2:+48796369 Msa0603870:intron
GTGTATAGCGATATGAGCTC+TGG 0.536493 4_2:+48795663 Msa0603870:CDS
CGCTATCCTATGTCTGGTGG+TGG 0.536818 4_2:+48796427 Msa0603870:three_prime_UTR
CTTCTTGCCGGTCACACCAC+CGG 0.538122 4_2:+48795228 Msa0603870:CDS
GGTGTGTTTAAGCCACCTGT+TGG 0.539489 4_2:+48790976 Msa0603870:CDS
TGTTGTAGATTCCTCCCTTG+GGG 0.539670 4_2:+48795551 Msa0603870:CDS
ATTGAATCATTCTCAAAGCT+GGG 0.541879 4_2:+48794315 Msa0603870:CDS
ATTGATATGTGTTACCTGTA+CGG 0.542818 4_2:-48792704 None:intergenic
TTGTAGATTCCTCCCTTGGG+GGG 0.543115 4_2:+48795553 Msa0603870:CDS
AAGAGAATAGCCGACAACCT+TGG 0.544736 4_2:+48793719 Msa0603870:CDS
CCGACTCCTGGTACACCGTA+TGG 0.545762 4_2:+48791141 Msa0603870:CDS
TGAGTGCATCAGCTCTAATG+TGG 0.550383 4_2:+48791969 Msa0603870:CDS
TGGTACACCGTATGGAGGAT+GGG 0.551695 4_2:+48791149 Msa0603870:CDS
ACATTAAAGCCCAATCATGT+TGG 0.552104 4_2:-48790933 None:intergenic
ACTTCTTTGAGAAATCCAAC+AGG 0.553641 4_2:-48790991 None:intergenic
GTTGTAGATTCCTCCCTTGG+GGG 0.554766 4_2:+48795552 Msa0603870:CDS
TTCGAAACCCCAATACCTAA+AGG 0.555523 4_2:-48794078 None:intergenic
TGGAGCTTCAGGAAGACGGC+TGG 0.556390 4_2:+48791114 Msa0603870:CDS
GATTAATATCATCTCGTGAA+AGG 0.556843 4_2:-48790215 None:intergenic
CCTCTGATGAAAGACGTGTC+TGG 0.560973 4_2:-48790065 None:intergenic
TTGAAGGGTCAGCTTGTCAC+CGG 0.561700 4_2:-48795010 None:intergenic
ACACTATCAATCACTGAATG+AGG 0.561789 4_2:+48792371 Msa0603870:CDS
GGTTCCTCCCATCCTCCATA+CGG 0.561878 4_2:-48791156 None:intergenic
ACGGCTGGTTTACCGACTCC+TGG 0.562227 4_2:+48791129 Msa0603870:CDS
TGAAGAGCGACATCAGTGCC+AGG 0.564631 4_2:-48795417 None:intergenic
TAAGGGTCCGATGAAGCAGC+CGG 0.570315 4_2:-48794453 None:intergenic
AGCTGCCCAAGCAGATTCAT+CGG 0.572308 4_2:-48790878 None:intergenic
TTTCTCAAAGAAGTTCCACT+TGG 0.576399 4_2:+48791000 Msa0603870:CDS
TACAGACTCAGACCTGGAGC+GGG 0.576888 4_2:-48794749 None:intergenic
TCTTCTCACAGCTATGCGAC+TGG 0.577040 4_2:+48793502 Msa0603870:CDS
AAGTTCCACTTGGGGATGTG+AGG 0.581746 4_2:+48791010 Msa0603870:CDS
TATGAGCGTGCCTTAACGAA+TGG 0.583068 4_2:+48794003 Msa0603870:CDS
GGAAATTGGGACATCAAAGC+CGG 0.586825 4_2:+48795249 Msa0603870:CDS
AGGTTGCTATTGTAACTGGA+TGG 0.587968 4_2:-48795309 None:intergenic
GCCCAAGCAGATTCATCGGT+CGG 0.593496 4_2:-48790874 None:intergenic
CCATCTTGGACTCACGCTGA+TGG 0.593659 4_2:+48794689 Msa0603870:CDS
GATTTGGAGCTTCAGGAAGA+CGG 0.595474 4_2:+48791110 Msa0603870:CDS
GAGTACCTCACTAGGTGAGA+AGG 0.599416 4_2:-48794493 None:intergenic
TGTGGTCAGCAGCTGTGTGG+TGG 0.600871 4_2:+48796400 Msa0603870:three_prime_UTR
TGTGTGACGTGTTTGTATCA+GGG 0.602492 4_2:-48790102 None:intergenic
ATCAGCTTTGTGGCTAAAGG+AGG 0.602889 4_2:+48795783 Msa0603870:CDS
AAGCTCTCAAAATGGTGACA+TGG 0.603418 4_2:+48792289 Msa0603870:CDS
TCAGTTCAAGCAATTCTCTA+CGG 0.603741 4_2:+48795198 Msa0603870:CDS
TAGCCACAAAGCTGATAGGA+TGG 0.604345 4_2:-48795776 None:intergenic
CCATCAGCGTGAGTCCAAGA+TGG 0.605522 4_2:-48794689 None:intergenic
GCTAAAACTGGACATAGTTG+GGG 0.607890 4_2:+48794102 Msa0603870:CDS
TTACAAATTATATAGTGTAA+CGG 0.608043 4_2:+48792419 Msa0603870:CDS
ATACAGACTCAGACCTGGAG+CGG 0.609148 4_2:-48794750 None:intergenic
TCTCAAAGAAGTTCCACTTG+GGG 0.609452 4_2:+48791002 Msa0603870:CDS
TCTCAAAATGGTGACATGGA+TGG 0.613135 4_2:+48792293 Msa0603870:CDS
TCTCACAGCTATGCGACTGG+AGG 0.614490 4_2:+48793505 Msa0603870:CDS
AGAAGGTAAATGTCACTCGT+AGG 0.615292 4_2:-48794476 None:intergenic
CATCTTAATACCAGAACTCA+CGG 0.617204 4_2:-48793537 None:intergenic
GATGATAAGAGGCAATTGAA+GGG 0.617420 4_2:-48795025 None:intergenic
AGCATATAAATCATCACACC+AGG 0.618298 4_2:-48794054 None:intergenic
ACAGCTGCTGACCACAACTG+CGG 0.619949 4_2:-48796393 None:intergenic
TCTTTGAGAAATCCAACAGG+TGG 0.620033 4_2:-48790988 None:intergenic
TAAATGTCACTCGTAGGTAA+GGG 0.624192 4_2:-48794470 None:intergenic
CTCCTGCCACCACCAGACAT+AGG 0.626096 4_2:-48796433 None:intergenic
ATTTACCTTCTCACCTAGTG+AGG 0.630654 4_2:+48794488 Msa0603870:CDS
AATGCAATGAGTACCTCACT+AGG 0.632196 4_2:-48794501 None:intergenic
CACAAAGAATGATAGCCTGA+AGG 0.636801 4_2:+48791997 Msa0603870:CDS
CCAGACACGTCTTTCATCAG+AGG 0.639396 4_2:+48790065 Msa0603870:five_prime_UTR
AGTATATTGATCCAACAGGC+CGG 0.642469 4_2:-48792250 None:intergenic
TTTGATGTCCCAATTTCCGG+TGG 0.643405 4_2:-48795244 None:intergenic
CAAATGCGGTATGAAGTCAC+AGG 0.645340 4_2:+48793139 Msa0603870:CDS
GAGTGCATCAGCTCTAATGT+GGG 0.646670 4_2:+48791970 Msa0603870:CDS
GATCGCTATCCTATGTCTGG+TGG 0.647033 4_2:+48796424 Msa0603870:three_prime_UTR
CTATGCGACTGGAGGGACAT+CGG 0.651300 4_2:+48793513 Msa0603870:CDS
TCGATATAACATTCACCACT+CGG 0.652176 4_2:-48792332 None:intergenic
CTCACAGCTATGCGACTGGA+GGG 0.653289 4_2:+48793506 Msa0603870:CDS
TTGCATCAAAGAATGAGACA+TGG 0.656551 4_2:+48790818 Msa0603870:CDS
CCATACGGTGTACCAGGAGT+CGG 0.658192 4_2:-48791141 None:intergenic
TTGTTGTTGGATCCCAAATG+CGG 0.660110 4_2:+48793125 Msa0603870:CDS
CGAAACGTATGCGACTGAGT+CGG 0.661456 4_2:-48790784 None:intergenic
AGCAACCTCACATCCCCAAG+TGG 0.662619 4_2:-48791015 None:intergenic
TACTGAATGATGTATAGACT+AGG 0.668553 4_2:-48794372 None:intergenic
ACTCCTGGTACACCGTATGG+AGG 0.671069 4_2:+48791144 Msa0603870:CDS
GAACTGATGCATATTCAGGT+CGG 0.673754 4_2:-48795182 None:intergenic
TAGCCTGAAGGAGAAAATGT+CGG 0.674437 4_2:+48792009 Msa0603870:CDS
GGTGTACTCAGTATTCAAAG+AGG 0.683770 4_2:+48794024 Msa0603870:CDS
TCCCTATTACACCATTCACA+AGG 0.687838 4_2:+48792141 Msa0603870:CDS
AGTTGTGGTCAGCAGCTGTG+TGG 0.701518 4_2:+48796397 Msa0603870:three_prime_UTR
GAACCTAATACCGAACTCAG+AGG 0.704808 4_2:+48791174 Msa0603870:CDS
TACACCGTATGGAGGATGGG+AGG 0.724621 4_2:+48791152 Msa0603870:CDS
GTTATGACACTTATGCTGCG+TGG 0.726006 4_2:+48790730 Msa0603870:CDS
TCACTGAATGAGGAAACTGG+AGG 0.742577 4_2:+48792381 Msa0603870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAATTTCAAAAATAATTT+TGG - chr4_2:48793049-48793068 None:intergenic 10.0%
!!! TAAACTTTAAGAGATTAATT+TGG - chr4_2:48790450-48790469 None:intergenic 15.0%
!! ATATCTCAACTAAATTAAAT+TGG - chr4_2:48790506-48790525 None:intergenic 15.0%
!! TATAGGAAAATTAAGAATTT+GGG + chr4_2:48790955-48790974 Msa0603870:CDS 15.0%
!!! TTAAAAGTGTTGTAAATAAA+AGG - chr4_2:48791488-48791507 None:intergenic 15.0%
!! TTACAAATTATATAGTGTAA+CGG + chr4_2:48792419-48792438 Msa0603870:CDS 15.0%
!!! CTGTTAATTTTTATACTAAA+AGG - chr4_2:48792493-48792512 None:intergenic 15.0%
!! GCTATTATAATTTATAAATG+CGG - chr4_2:48792830-48792849 None:intergenic 15.0%
!! AAGAACAAATATTAGAAAAT+TGG - chr4_2:48793432-48793451 None:intergenic 15.0%
!!! GATATTTTTTTCTTCTTAAA+AGG + chr4_2:48793599-48793618 Msa0603870:intron 15.0%
!! GTATAAATTTATAATCTCAA+AGG - chr4_2:48794577-48794596 None:intergenic 15.0%
!!! ATTTTGTACAGAATTTTTAT+TGG - chr4_2:48796138-48796157 None:intergenic 15.0%
!! AAAAAATTAATATAGACTCA+TGG - chr4_2:48796211-48796230 None:intergenic 15.0%
!! TATTTATTAATAATTGGAAG+TGG + chr4_2:48796345-48796364 Msa0603870:intron 15.0%
!! TATAGAGAAGATATAATAGA+AGG - chr4_2:48790368-48790387 None:intergenic 20.0%
!! TTAGTTGAGATATAAATTTC+TGG + chr4_2:48790513-48790532 Msa0603870:five_prime_UTR 20.0%
!! TAGTTGAGATATAAATTTCT+GGG + chr4_2:48790514-48790533 Msa0603870:five_prime_UTR 20.0%
!!! ATCTATGCTGTTTTATTTTT+TGG + chr4_2:48790594-48790613 Msa0603870:intron 20.0%
!! GTATAGGAAAATTAAGAATT+TGG + chr4_2:48790954-48790973 Msa0603870:CDS 20.0%
!!! TTTAGTTTTCTTAGTTGAAA+GGG + chr4_2:48791263-48791282 Msa0603870:intron 20.0%
!! CACATTGTCAAAAATAAAAA+AGG - chr4_2:48791937-48791956 None:intergenic 20.0%
!!! TTTTATTTTTGACAATGTGA+AGG + chr4_2:48791938-48791957 Msa0603870:intron 20.0%
!!! TTTATTTTTGACAATGTGAA+GGG + chr4_2:48791939-48791958 Msa0603870:intron 20.0%
!! AGTATAAAAATTAACAGACA+TGG + chr4_2:48792496-48792515 Msa0603870:intron 20.0%
!! CTTATAAAATCCATCAAATA+TGG - chr4_2:48792530-48792549 None:intergenic 20.0%
!! ACTAAATAATATTCAAGTAG+AGG - chr4_2:48792995-48793014 None:intergenic 20.0%
!!! GAAATTTTCTTTTTTCATGT+AGG + chr4_2:48793060-48793079 Msa0603870:intron 20.0%
!!! AAAGTTTACTTGCTATTTAT+TGG + chr4_2:48793238-48793257 Msa0603870:intron 20.0%
!! AATGTCTGTAAGAATTAATA+GGG - chr4_2:48793331-48793350 None:intergenic 20.0%
!!! TTATAATTGTTTCTGTCATT+CGG - chr4_2:48793389-48793408 None:intergenic 20.0%
!!! TAATATTTGTTCTTGTGTTT+TGG + chr4_2:48793438-48793457 Msa0603870:intron 20.0%
!! TAAGAAGAAAAAAATATCCA+TGG - chr4_2:48793597-48793616 None:intergenic 20.0%
!!! TTGCTTTATTTTTAGATACT+CGG + chr4_2:48793642-48793661 Msa0603870:intron 20.0%
!! TGTTTATTTCAACATTCTAT+TGG + chr4_2:48795894-48795913 Msa0603870:three_prime_UTR 20.0%
!! TTTGATTATTTGAACTTTGT+AGG - chr4_2:48795949-48795968 None:intergenic 20.0%
!! ATTGAAAATATGATAGGATT+TGG - chr4_2:48796167-48796186 None:intergenic 20.0%
! GATATGTGACAAATAATGTA+AGG - chr4_2:48790247-48790266 None:intergenic 25.0%
! ACAAGAAAACAAAGATGATT+TGG - chr4_2:48790281-48790300 None:intergenic 25.0%
! GATATAATAGAAGGTAGAAA+GGG - chr4_2:48790359-48790378 None:intergenic 25.0%
! AGATATAATAGAAGGTAGAA+AGG - chr4_2:48790360-48790379 None:intergenic 25.0%
! CTGTTAACTTTACTCAATTA+AGG + chr4_2:48790390-48790409 Msa0603870:five_prime_UTR 25.0%
!! ACTTTAAGAGATTAATTTGG+AGG - chr4_2:48790447-48790466 None:intergenic 25.0%
!! TTTAATTCAAGTTTGTTCTC+TGG + chr4_2:48790558-48790577 Msa0603870:five_prime_UTR 25.0%
! GCTTAATGACTTATAGATTA+AGG + chr4_2:48790627-48790646 Msa0603870:intron 25.0%
!! TGAAATTTTCAGAAAGATGA+AGG + chr4_2:48790687-48790706 Msa0603870:intron 25.0%
!! GGTTTTTGTGTTTATGTTTA+TGG + chr4_2:48790708-48790727 Msa0603870:CDS 25.0%
!! AATGTTCTTTATTTGTACCA+AGG + chr4_2:48791238-48791257 Msa0603870:intron 25.0%
!!! CTTTAGTTTTCTTAGTTGAA+AGG + chr4_2:48791262-48791281 Msa0603870:intron 25.0%
! CTAATTACTACACATAAAAG+TGG - chr4_2:48791551-48791570 None:intergenic 25.0%
! AGGTAGCAAAACATAAAAAA+TGG - chr4_2:48791637-48791656 None:intergenic 25.0%
!! AACTTTACTTAGTTTGAAGT+TGG + chr4_2:48791767-48791786 Msa0603870:intron 25.0%
! AGAGATATTTCAGAAGTTAT+GGG - chr4_2:48791793-48791812 None:intergenic 25.0%
! TTGAAAATATTCAACCTGTT+TGG + chr4_2:48792116-48792135 Msa0603870:CDS 25.0%
! TGAAAATATTCAACCTGTTT+GGG + chr4_2:48792117-48792136 Msa0603870:CDS 25.0%
!!! GCATAATCAAAATCTAGTTT+TGG - chr4_2:48792172-48792191 None:intergenic 25.0%
! AAATTATATAGTGTAACGGT+AGG + chr4_2:48792423-48792442 Msa0603870:intron 25.0%
! TAATTCAATGTAATCCACAT+TGG + chr4_2:48792743-48792762 Msa0603870:intron 25.0%
!!! GACACTTATTTTATAAAGGA+GGG - chr4_2:48792973-48792992 None:intergenic 25.0%
!!! AGAGGACACTTATTTTATAA+AGG - chr4_2:48792977-48792996 None:intergenic 25.0%
! ATTGTATTTGATGTTATGAC+TGG + chr4_2:48793021-48793040 Msa0603870:intron 25.0%
!!! GTTTTAATCGTAATGTTTAG+TGG + chr4_2:48793274-48793293 Msa0603870:intron 25.0%
! ATGTCTGTAAGAATTAATAG+GGG - chr4_2:48793330-48793349 None:intergenic 25.0%
! GAATGTCTGTAAGAATTAAT+AGG - chr4_2:48793332-48793351 None:intergenic 25.0%
! AAATTGGAAATCATAGCATA+TGG - chr4_2:48793416-48793435 None:intergenic 25.0%
! CACAACTTATAATATGTTGA+AGG + chr4_2:48793766-48793785 Msa0603870:CDS 25.0%
! ATGATTTATATGCTTCCTTT+AGG + chr4_2:48794063-48794082 Msa0603870:CDS 25.0%
!! ACTCGATGATTTTATTCAAT+AGG - chr4_2:48794237-48794256 None:intergenic 25.0%
!!! AGATTCTATCTATTTTGAAG+AGG + chr4_2:48794338-48794357 Msa0603870:CDS 25.0%
! ACATATCAAGCTCATTTAAT+TGG + chr4_2:48794394-48794413 Msa0603870:CDS 25.0%
! TATCTTCTAATGATAGGTAT+TGG + chr4_2:48794550-48794569 Msa0603870:intron 25.0%
! TTGCAGAAGAAAAATATAGA+GGG - chr4_2:48794602-48794621 None:intergenic 25.0%
! TATTTACTGTCTTGATTTCT+AGG + chr4_2:48794955-48794974 Msa0603870:intron 25.0%
! ATTTACTGTCTTGATTTCTA+GGG + chr4_2:48794956-48794975 Msa0603870:intron 25.0%
!! ATTTTTGCATTGTAAGTGAT+TGG - chr4_2:48795389-48795408 None:intergenic 25.0%
! ACAGTTTATTTCAACATTCA+AGG + chr4_2:48795858-48795877 Msa0603870:CDS 25.0%
! AAGTGCTCTAATCAAATTTA+GGG + chr4_2:48796033-48796052 Msa0603870:intron 25.0%
!!! TGTAAGTGAATTGTTTTGAT+TGG - chr4_2:48796106-48796125 None:intergenic 25.0%
! CCATCAATTGAAAATATGAT+AGG - chr4_2:48796173-48796192 None:intergenic 25.0%
!! CCTATCATATTTTCAATTGA+TGG + chr4_2:48796170-48796189 Msa0603870:intron 25.0%
! TTAATATAGACTCATGGATT+TGG - chr4_2:48796205-48796224 None:intergenic 25.0%
! TTATTAATAATTGGAAGTGG+TGG + chr4_2:48796348-48796367 Msa0603870:intron 25.0%
GATTAATATCATCTCGTGAA+AGG - chr4_2:48790218-48790237 None:intergenic 30.0%
GACAAATAATGTAAGGACTA+AGG - chr4_2:48790240-48790259 None:intergenic 30.0%
! AATTTGGAGGTTCTAATTGA+AGG - chr4_2:48790434-48790453 None:intergenic 30.0%
AGAAGAAAACCAACATGATT+GGG + chr4_2:48790924-48790943 Msa0603870:CDS 30.0%
! ATGATTGGGCTTTAATGTAT+AGG + chr4_2:48790938-48790957 Msa0603870:CDS 30.0%
TGTTGATGTTAGATGTTGAT+AGG + chr4_2:48791085-48791104 Msa0603870:CDS 30.0%
!! TAGATGTTGATAGGTTGATT+TGG + chr4_2:48791094-48791113 Msa0603870:CDS 30.0%
ACTAAGAAAACTAAAGACCT+TGG - chr4_2:48791258-48791277 None:intergenic 30.0%
AAAGAATCGCAGTAAAATAC+AGG + chr4_2:48791388-48791407 Msa0603870:intron 30.0%
ATACAACACAACAATGATTG+AGG - chr4_2:48791414-48791433 None:intergenic 30.0%
GAGAGATATTTCAGAAGTTA+TGG - chr4_2:48791794-48791813 None:intergenic 30.0%
!!! TCCAATTTTTTCTTGACAAG+CGG - chr4_2:48792053-48792072 None:intergenic 30.0%
TGTCAAGAAAAAATTGGAAC+AGG + chr4_2:48792055-48792074 Msa0603870:CDS 30.0%
TCAAATCGATCAAAAAACTC+TGG - chr4_2:48792100-48792119 None:intergenic 30.0%
!! TTTTGGTTATACCTTGTGAA+TGG - chr4_2:48792155-48792174 None:intergenic 30.0%
! TTTGATTATGCATGTGCTTT+TGG + chr4_2:48792181-48792200 Msa0603870:intron 30.0%
ATTGAGATCACACAGTAATA+AGG - chr4_2:48792207-48792226 None:intergenic 30.0%
TATTCAACTTTGACAGATCT+TGG + chr4_2:48792227-48792246 Msa0603870:intron 30.0%
TCATGAATGATGTTATTCAC+CGG + chr4_2:48792455-48792474 Msa0603870:intron 30.0%
TAAAAGGAAACATATCCAAC+CGG - chr4_2:48792477-48792496 None:intergenic 30.0%
GGATTCTAATCCATATTTGA+TGG + chr4_2:48792517-48792536 Msa0603870:intron 30.0%
CATTCAAAGCTAGCATATTA+TGG + chr4_2:48792555-48792574 Msa0603870:intron 30.0%
TGTAAATTACAGCGATAACT+AGG - chr4_2:48792583-48792602 None:intergenic 30.0%
ACCAAGACAGATTTACATTA+GGG - chr4_2:48792607-48792626 None:intergenic 30.0%
TACCAAGACAGATTTACATT+AGG - chr4_2:48792608-48792627 None:intergenic 30.0%
ATTGATATGTGTTACCTGTA+CGG - chr4_2:48792707-48792726 None:intergenic 30.0%
CATAAAGTTGAAGCAGAAAT+TGG - chr4_2:48792907-48792926 None:intergenic 30.0%
!!! GGACACTTATTTTATAAAGG+AGG - chr4_2:48792974-48792993 None:intergenic 30.0%
AAATAACTCACCCTATAAAG+TGG - chr4_2:48793169-48793188 None:intergenic 30.0%
ATGTTTAGTGGTATCATTTG+AGG + chr4_2:48793286-48793305 Msa0603870:intron 30.0%
TGCACAAAAATTGAAGTGAA+GGG - chr4_2:48793688-48793707 None:intergenic 30.0%
CTAATCGAATTAAGAGTGAT+TGG - chr4_2:48793797-48793816 None:intergenic 30.0%
!! TACACATTTTTAACTCTCCT+AGG - chr4_2:48793833-48793852 None:intergenic 30.0%
! CTAAGAATCATAACTGACTT+AGG - chr4_2:48793888-48793907 None:intergenic 30.0%
TGTTGCAAGATAATGATTTC+AGG + chr4_2:48793930-48793949 Msa0603870:intron 30.0%
!! GATAATGATTTCAGGTTTCA+CGG + chr4_2:48793938-48793957 Msa0603870:intron 30.0%
TATATGCTTCCTTTAGGTAT+TGG + chr4_2:48794069-48794088 Msa0603870:CDS 30.0%
ATATGCTTCCTTTAGGTATT+GGG + chr4_2:48794070-48794089 Msa0603870:CDS 30.0%
AACCTAAAACAAATACCTAC+CGG - chr4_2:48794163-48794182 None:intergenic 30.0%
TAGGTGTACATAATCTTGAA+AGG - chr4_2:48794218-48794237 None:intergenic 30.0%
AATTGAATCATTCTCAAAGC+TGG + chr4_2:48794314-48794333 Msa0603870:CDS 30.0%
ATTGAATCATTCTCAAAGCT+GGG + chr4_2:48794315-48794334 Msa0603870:CDS 30.0%
!! TCTATCTATTTTGAAGAGGA+AGG + chr4_2:48794342-48794361 Msa0603870:CDS 30.0%
!! CTATCTATTTTGAAGAGGAA+GGG + chr4_2:48794343-48794362 Msa0603870:CDS 30.0%
TACTGAATGATGTATAGACT+AGG - chr4_2:48794375-48794394 None:intergenic 30.0%
AGCTCATTTAATTGGAAATC+TGG + chr4_2:48794402-48794421 Msa0603870:CDS 30.0%
GCTCATTTAATTGGAAATCT+GGG + chr4_2:48794403-48794422 Msa0603870:CDS 30.0%
! GTACTCATTGCATTTTCTTT+TGG + chr4_2:48794510-48794529 Msa0603870:intron 30.0%
ACCACATATCTTCTAATGAT+AGG + chr4_2:48794544-48794563 Msa0603870:intron 30.0%
ACCTATCATTAGAAGATATG+TGG - chr4_2:48794548-48794567 None:intergenic 30.0%
GTTGCAGAAGAAAAATATAG+AGG - chr4_2:48794603-48794622 None:intergenic 30.0%
TGCAGAAATAACGTTTAGAA+AGG - chr4_2:48794632-48794651 None:intergenic 30.0%
TAATCGCCTAAAAACTAAGA+CGG + chr4_2:48794810-48794829 Msa0603870:intron 30.0%
!! TCTTTTCCGTCTTAGTTTTT+AGG - chr4_2:48794819-48794838 None:intergenic 30.0%
! TTAGTCCATTCCTTTAAGTT+AGG + chr4_2:48794847-48794866 Msa0603870:intron 30.0%
TTTGTCCTAACTTAAAGGAA+TGG - chr4_2:48794855-48794874 None:intergenic 30.0%
!! GTGTTTTTGTCCTAACTTAA+AGG - chr4_2:48794860-48794879 None:intergenic 30.0%
! AGTCTTGTGAAAAAGAAACT+AGG - chr4_2:48795332-48795351 None:intergenic 30.0%
ACCTTTAGACTTATCCTAAA+AGG + chr4_2:48795444-48795463 Msa0603870:CDS 30.0%
!!! ACCTTTTAGGATAAGTCTAA+AGG - chr4_2:48795448-48795467 None:intergenic 30.0%
ATCATTCCAGGAAGATTAAT+TGG - chr4_2:48795498-48795517 None:intergenic 30.0%
AATCTACAACAATAAGAGGT+TGG - chr4_2:48795542-48795561 None:intergenic 30.0%
GATTATTTGAACTTTGTAGG+TGG - chr4_2:48795946-48795965 None:intergenic 30.0%
! CTAAATTTGATTAGAGCACT+TGG - chr4_2:48796034-48796053 None:intergenic 30.0%
CAAGTGCTCTAATCAAATTT+AGG + chr4_2:48796032-48796051 Msa0603870:intron 30.0%
GAACAAAAAAACAAGTCCAC+CGG + chr4_2:48790136-48790155 Msa0603870:five_prime_UTR 35.0%
CTTCTGATAAAAAACGTGTC+CGG - chr4_2:48790158-48790177 None:intergenic 35.0%
! TGAGATATAAATTTCTGGGC+TGG + chr4_2:48790518-48790537 Msa0603870:five_prime_UTR 35.0%
TTGCATCAAAGAATGAGACA+TGG + chr4_2:48790818-48790837 Msa0603870:CDS 35.0%
TCTTCTGATAAGATCTTCCT+TGG - chr4_2:48790910-48790929 None:intergenic 35.0%
CAGAAGAAAACCAACATGAT+TGG + chr4_2:48790923-48790942 Msa0603870:CDS 35.0%
ACATTAAAGCCCAATCATGT+TGG - chr4_2:48790936-48790955 None:intergenic 35.0%
! ACTTCTTTGAGAAATCCAAC+AGG - chr4_2:48790994-48791013 None:intergenic 35.0%
TTTCTCAAAGAAGTTCCACT+TGG + chr4_2:48791000-48791019 Msa0603870:CDS 35.0%
TTCTCAAAGAAGTTCCACTT+GGG + chr4_2:48791001-48791020 Msa0603870:CDS 35.0%
TCAAGCACAGAAGACTAATT+TGG + chr4_2:48791056-48791075 Msa0603870:CDS 35.0%
AACAAAATGTCCTCTGAGTT+CGG - chr4_2:48791187-48791206 None:intergenic 35.0%
! AACCAATGTTCTCAAGCTTT+TGG + chr4_2:48791675-48791694 Msa0603870:intron 35.0%
TTCCAAAAGCTTGAGAACAT+TGG - chr4_2:48791680-48791699 None:intergenic 35.0%
TCCGCTTGTCAAGAAAAAAT+TGG + chr4_2:48792049-48792068 Msa0603870:CDS 35.0%
AATCGATCAAAAAACTCTGG+CGG - chr4_2:48792097-48792116 None:intergenic 35.0%
ACCTTGTGAATGGTGTAATA+GGG - chr4_2:48792145-48792164 None:intergenic 35.0%
TACCTTGTGAATGGTGTAAT+AGG - chr4_2:48792146-48792165 None:intergenic 35.0%
CTACAGTATATTGATCCAAC+AGG - chr4_2:48792257-48792276 None:intergenic 35.0%
TTGGATCAATATACTGTAGC+TGG + chr4_2:48792258-48792277 Msa0603870:CDS 35.0%
TCGATATAACATTCACCACT+CGG - chr4_2:48792335-48792354 None:intergenic 35.0%
ACACTATCAATCACTGAATG+AGG + chr4_2:48792371-48792390 Msa0603870:CDS 35.0%
ACCCTAATGTAAATCTGTCT+TGG + chr4_2:48792603-48792622 Msa0603870:intron 35.0%
! GGATTCAAAGCATCTATTGT+TGG + chr4_2:48792642-48792661 Msa0603870:CDS 35.0%
GAAAACAGTTTAAGCCAATG+TGG - chr4_2:48792760-48792779 None:intergenic 35.0%
GACAAGCATATCATGTAAAG+AGG + chr4_2:48792926-48792945 Msa0603870:intron 35.0%
ACACATATCCCAATTGTTGT+TGG + chr4_2:48793112-48793131 Msa0603870:CDS 35.0%
! TTTGGGATCCAACAACAATT+GGG - chr4_2:48793123-48793142 None:intergenic 35.0%
! ATTTGGGATCCAACAACAAT+TGG - chr4_2:48793124-48793143 None:intergenic 35.0%
!!! TTCTTGTGTTTTGGTGTGTT+AGG + chr4_2:48793447-48793466 Msa0603870:intron 35.0%
!! GTTTTGGTGTGTTAGGAAAT+CGG + chr4_2:48793454-48793473 Msa0603870:intron 35.0%
GGAAATCGGATCATTCTTTA+TGG + chr4_2:48793468-48793487 Msa0603870:intron 35.0%
CATCTTAATACCAGAACTCA+CGG - chr4_2:48793540-48793559 None:intergenic 35.0%
AGTTTACATTCAAGCATCCA+TGG + chr4_2:48793577-48793596 Msa0603870:intron 35.0%
CTGCACAAAAATTGAAGTGA+AGG - chr4_2:48793689-48793708 None:intergenic 35.0%
! CTTCACTTCAATTTTTGTGC+AGG + chr4_2:48793687-48793706 Msa0603870:intron 35.0%
TTAGTTCGTCATGTAATCCT+AGG + chr4_2:48793813-48793832 Msa0603870:intron 35.0%
ATCTGCATAAGTGACTTCTT+TGG - chr4_2:48793980-48793999 None:intergenic 35.0%
AGCATATAAATCATCACACC+AGG - chr4_2:48794057-48794076 None:intergenic 35.0%
! TATGCTTCCTTTAGGTATTG+GGG + chr4_2:48794071-48794090 Msa0603870:CDS 35.0%
AAGCTAAAACTGGACATAGT+TGG + chr4_2:48794100-48794119 Msa0603870:CDS 35.0%
AGCTAAAACTGGACATAGTT+GGG + chr4_2:48794101-48794120 Msa0603870:CDS 35.0%
GAAATCCATTTGACACTTTC+TGG + chr4_2:48794124-48794143 Msa0603870:CDS 35.0%
!! AACCGGTAGGTATTTGTTTT+AGG + chr4_2:48794158-48794177 Msa0603870:intron 35.0%
CTGCAAACTACTTTGTCATT+AGG + chr4_2:48794291-48794310 Msa0603870:intron 35.0%
TAAATGTCACTCGTAGGTAA+GGG - chr4_2:48794473-48794492 None:intergenic 35.0%
!! ACGTTATTTCTGCAGAAAAC+TGG + chr4_2:48794638-48794657 Msa0603870:intron 35.0%
!! CGTTATTTCTGCAGAAAACT+GGG + chr4_2:48794639-48794658 Msa0603870:intron 35.0%
TTCAGAATTCAATATCGCCT+TGG - chr4_2:48794717-48794736 None:intergenic 35.0%
TTTACTTCCCTTATCTCATG+CGG + chr4_2:48794772-48794791 Msa0603870:intron 35.0%
GATGATAAGAGGCAATTGAA+GGG - chr4_2:48795028-48795047 None:intergenic 35.0%
TGATGATAAGAGGCAATTGA+AGG - chr4_2:48795029-48795048 None:intergenic 35.0%
ATCAGAACAGAAGCCATAAA+AGG + chr4_2:48795045-48795064 Msa0603870:CDS 35.0%
! ACACAAGAAGCTACCTTTTA+TGG - chr4_2:48795061-48795080 None:intergenic 35.0%
CACAATAAGTAATGCAGGAA+GGG - chr4_2:48795117-48795136 None:intergenic 35.0%
GTAAGCACAATAAGTAATGC+AGG - chr4_2:48795122-48795141 None:intergenic 35.0%
TCAGTTCAAGCAATTCTCTA+CGG + chr4_2:48795198-48795217 Msa0603870:CDS 35.0%
CTATTGTAACTGGATGGAAT+TGG - chr4_2:48795306-48795325 None:intergenic 35.0%
! AACTAGGTTGCTATTGTAAC+TGG - chr4_2:48795316-48795335 None:intergenic 35.0%
! TTTTACTAGCAGCACCTTTT+AGG - chr4_2:48795461-48795480 None:intergenic 35.0%
CTAGAACCAATTAATCTTCC+TGG + chr4_2:48795489-48795508 Msa0603870:CDS 35.0%
GAGGAATCTACAACAATAAG+AGG - chr4_2:48795546-48795565 None:intergenic 35.0%
ACCACAAGAAAAACTGAAGA+AGG - chr4_2:48795579-48795598 None:intergenic 35.0%
! TTCAGTTTTTCTTGTGGTAC+CGG + chr4_2:48795581-48795600 Msa0603870:CDS 35.0%
!! ATGGCTCTAGAAGAAAATTC+TGG - chr4_2:48795812-48795831 None:intergenic 35.0%
TAGAGCCATTATTCAACTTC+AGG + chr4_2:48795823-48795842 Msa0603870:CDS 35.0%
AGAGCCATTATTCAACTTCA+GGG + chr4_2:48795824-48795843 Msa0603870:CDS 35.0%
TCATCCCTGAAGTTGAATAA+TGG - chr4_2:48795831-48795850 None:intergenic 35.0%
TGCTCTAATCAAATTTAGGG+TGG + chr4_2:48796036-48796055 Msa0603870:intron 35.0%
! TCAAATTTAGGGTGGCAAAA+TGG + chr4_2:48796044-48796063 Msa0603870:intron 35.0%
! CAAATTTAGGGTGGCAAAAT+GGG + chr4_2:48796045-48796064 Msa0603870:intron 35.0%
TTAATAATTGGAAGTGGTGG+TGG + chr4_2:48796351-48796370 Msa0603870:intron 35.0%
TGTGTGACGTGTTTGTATCA+GGG - chr4_2:48790105-48790124 None:intergenic 40.0%
ATGTGTGACGTGTTTGTATC+AGG - chr4_2:48790106-48790125 None:intergenic 40.0%
! GCGTGGTTGTGTTACTATTA+AGG + chr4_2:48790747-48790766 Msa0603870:CDS 40.0%
! TCTTTGAGAAATCCAACAGG+TGG - chr4_2:48790991-48791010 None:intergenic 40.0%
TCTCAAAGAAGTTCCACTTG+GGG + chr4_2:48791002-48791021 Msa0603870:CDS 40.0%
!! ATAGGTTGATTTGGAGCTTC+AGG + chr4_2:48791103-48791122 Msa0603870:CDS 40.0%
! GAACTCAGAGGACATTTTGT+TGG + chr4_2:48791186-48791205 Msa0603870:CDS 40.0%
CAATGTGATTGTAGCAACCA+GGG + chr4_2:48791310-48791329 Msa0603870:intron 40.0%
!!! GCAACCAGGGTTTTAAATAG+TGG + chr4_2:48791323-48791342 Msa0603870:intron 40.0%
! ACGACCACTATTTAAAACCC+TGG - chr4_2:48791330-48791349 None:intergenic 40.0%
!!! AGGGTTTTAAATAGTGGTCG+TGG + chr4_2:48791329-48791348 Msa0603870:intron 40.0%
TTATGTCGAAGCCCAAATCA+TGG + chr4_2:48791455-48791474 Msa0603870:intron 40.0%
AAGGTTCGCAACCATGATTT+GGG - chr4_2:48791469-48791488 None:intergenic 40.0%
AAAGGTTCGCAACCATGATT+TGG - chr4_2:48791470-48791489 None:intergenic 40.0%
!! AGAACATTGGTTCCTGTTTG+GGG - chr4_2:48791667-48791686 None:intergenic 40.0%
!! GAGAACATTGGTTCCTGTTT+GGG - chr4_2:48791668-48791687 None:intergenic 40.0%
!! TGAGAACATTGGTTCCTGTT+TGG - chr4_2:48791669-48791688 None:intergenic 40.0%
AGAAGCTGAAAATTGCAGAC+AGG - chr4_2:48791883-48791902 None:intergenic 40.0%
CACAAAGAATGATAGCCTGA+AGG + chr4_2:48791997-48792016 Msa0603870:CDS 40.0%
TAGCCTGAAGGAGAAAATGT+CGG + chr4_2:48792009-48792028 Msa0603870:CDS 40.0%
TCCCTATTACACCATTCACA+AGG + chr4_2:48792141-48792160 Msa0603870:CDS 40.0%
AGTATATTGATCCAACAGGC+CGG - chr4_2:48792253-48792272 None:intergenic 40.0%
AAACCCTCAAGCTCTCAAAA+TGG + chr4_2:48792281-48792300 Msa0603870:CDS 40.0%
!! TCACCATTTTGAGAGCTTGA+GGG - chr4_2:48792287-48792306 None:intergenic 40.0%
AAGCTCTCAAAATGGTGACA+TGG + chr4_2:48792289-48792308 Msa0603870:CDS 40.0%
TCTCAAAATGGTGACATGGA+TGG + chr4_2:48792293-48792312 Msa0603870:CDS 40.0%
CAATCACTGAATGAGGAAAC+TGG + chr4_2:48792378-48792397 Msa0603870:CDS 40.0%
GAATGATGTTATTCACCGGT+TGG + chr4_2:48792459-48792478 Msa0603870:intron 40.0%
TGTCTTGGTATGCTATATGC+AGG + chr4_2:48792618-48792637 Msa0603870:intron 40.0%
GTCTTGGTATGCTATATGCA+GGG + chr4_2:48792619-48792638 Msa0603870:intron 40.0%
TCTTGGTATGCTATATGCAG+GGG + chr4_2:48792620-48792639 Msa0603870:intron 40.0%
! AAAAGCATGGCTTGTCGAAA+AGG - chr4_2:48792672-48792691 None:intergenic 40.0%
!! TTCGACAAGCCATGCTTTTT+AGG + chr4_2:48792673-48792692 Msa0603870:CDS 40.0%
GCAAGCAATCCTAAAAAGCA+TGG - chr4_2:48792685-48792704 None:intergenic 40.0%
! TTGTTGTTGGATCCCAAATG+CGG + chr4_2:48793125-48793144 Msa0603870:CDS 40.0%
TGTGACTTCATACCGCATTT+GGG - chr4_2:48793140-48793159 None:intergenic 40.0%
TCACAGGTGATCCACTTTAT+AGG + chr4_2:48793155-48793174 Msa0603870:CDS 40.0%
CACAGGTGATCCACTTTATA+GGG + chr4_2:48793156-48793175 Msa0603870:CDS 40.0%
ACTGAGTACACCATTCGTTA+AGG - chr4_2:48794016-48794035 None:intergenic 40.0%
TTCGAAACCCCAATACCTAA+AGG - chr4_2:48794081-48794100 None:intergenic 40.0%
GCTAAAACTGGACATAGTTG+GGG + chr4_2:48794102-48794121 Msa0603870:CDS 40.0%
GTAAATGTCACTCGTAGGTA+AGG - chr4_2:48794474-48794493 None:intergenic 40.0%
AGAAGGTAAATGTCACTCGT+AGG - chr4_2:48794479-48794498 None:intergenic 40.0%
ATTTACCTTCTCACCTAGTG+AGG + chr4_2:48794488-48794507 Msa0603870:CDS 40.0%
AATGCAATGAGTACCTCACT+AGG - chr4_2:48794504-48794523 None:intergenic 40.0%
TGAACTTTCGTCTACCATCT+TGG + chr4_2:48794675-48794694 Msa0603870:CDS 40.0%
AGTAAATACAGACTCAGACC+TGG - chr4_2:48794758-48794777 None:intergenic 40.0%
AGCTTATCCGCATGAGATAA+GGG - chr4_2:48794782-48794801 None:intergenic 40.0%
TAGCTTATCCGCATGAGATA+AGG - chr4_2:48794783-48794802 None:intergenic 40.0%
GCTTCTGTTCTGATGATAAG+AGG - chr4_2:48795039-48795058 None:intergenic 40.0%
GCACAATAAGTAATGCAGGA+AGG - chr4_2:48795118-48795137 None:intergenic 40.0%
GAACTGATGCATATTCAGGT+CGG - chr4_2:48795185-48795204 None:intergenic 40.0%
GCTTGAACTGATGCATATTC+AGG - chr4_2:48795189-48795208 None:intergenic 40.0%
! AGGTTGCTATTGTAACTGGA+TGG - chr4_2:48795312-48795331 None:intergenic 40.0%
ATGCAAAAATCACCTGAACC+TGG + chr4_2:48795399-48795418 Msa0603870:CDS 40.0%
TGGTGACTTACAATCATTCC+AGG - chr4_2:48795510-48795529 None:intergenic 40.0%
! ACAACAATAAGAGGTTGGTC+TGG - chr4_2:48795537-48795556 None:intergenic 40.0%
ATTGTTGTAGATTCCTCCCT+TGG + chr4_2:48795549-48795568 Msa0603870:CDS 40.0%
TTGTTGTAGATTCCTCCCTT+GGG + chr4_2:48795550-48795569 Msa0603870:CDS 40.0%
! GCCTTCTTCAGTTTTTCTTG+TGG + chr4_2:48795575-48795594 Msa0603870:CDS 40.0%
! TCAGTTTTTCTTGTGGTACC+GGG + chr4_2:48795582-48795601 Msa0603870:CDS 40.0%
! TGATTTTGTCCATCCAAACC+CGG - chr4_2:48795603-48795622 None:intergenic 40.0%
GTATTGCCTTAATCCTTTCC+CGG - chr4_2:48795757-48795776 None:intergenic 40.0%
ATACCATCCTATCAGCTTTG+TGG + chr4_2:48795773-48795792 Msa0603870:CDS 40.0%
CTGATAAAAAACGTGTCCGG+TGG - chr4_2:48790155-48790174 None:intergenic 45.0%
GTTATGACACTTATGCTGCG+TGG + chr4_2:48790730-48790749 Msa0603870:CDS 45.0%
TAGTCTTCTGTGCTTGAGCA+TGG - chr4_2:48791053-48791072 None:intergenic 45.0%
! GATTTGGAGCTTCAGGAAGA+CGG + chr4_2:48791110-48791129 Msa0603870:CDS 45.0%
GAACCTAATACCGAACTCAG+AGG + chr4_2:48791174-48791193 Msa0603870:CDS 45.0%
TGTCCTCTGAGTTCGGTATT+AGG - chr4_2:48791180-48791199 None:intergenic 45.0%
GCAATGTGATTGTAGCAACC+AGG + chr4_2:48791309-48791328 Msa0603870:intron 45.0%
CAATGTCAAAGATCGCAACG+TGG - chr4_2:48791367-48791386 None:intergenic 45.0%
!! GAACATTGGTTCCTGTTTGG+GGG - chr4_2:48791666-48791685 None:intergenic 45.0%
! TGAGTGCATCAGCTCTAATG+TGG + chr4_2:48791969-48791988 Msa0603870:CDS 45.0%
! GAGTGCATCAGCTCTAATGT+GGG + chr4_2:48791970-48791989 Msa0603870:CDS 45.0%
CAGGCTATCATTCTTTGTGC+TGG - chr4_2:48791996-48792015 None:intergenic 45.0%
!! AAAATGTCGGCTCTTGTTGC+CGG + chr4_2:48792022-48792041 Msa0603870:CDS 45.0%
TTCTTGACAAGCGGATAGAC+CGG - chr4_2:48792044-48792063 None:intergenic 45.0%
CAACTTTGACAGATCTTGGC+CGG + chr4_2:48792231-48792250 Msa0603870:intron 45.0%
!! GTCACCATTTTGAGAGCTTG+AGG - chr4_2:48792288-48792307 None:intergenic 45.0%
!! CGATTACTTTTACGACCGAG+TGG + chr4_2:48792317-48792336 Msa0603870:CDS 45.0%
TCACTGAATGAGGAAACTGG+AGG + chr4_2:48792381-48792400 Msa0603870:CDS 45.0%
CTTGGTATGCTATATGCAGG+GGG + chr4_2:48792621-48792640 Msa0603870:intron 45.0%
! TTTAGGATTGCTTGCCGTAC+AGG + chr4_2:48792690-48792709 Msa0603870:CDS 45.0%
CTGTGACTTCATACCGCATT+TGG - chr4_2:48793141-48793160 None:intergenic 45.0%
CAAATGCGGTATGAAGTCAC+AGG + chr4_2:48793139-48793158 Msa0603870:CDS 45.0%
! AGGTTGTCGGCTATTCTCTT+TGG - chr4_2:48793719-48793738 None:intergenic 45.0%
AAGAGAATAGCCGACAACCT+TGG + chr4_2:48793719-48793738 Msa0603870:CDS 45.0%
CTCTGTTGTTCCAAGGTTGT+CGG - chr4_2:48793732-48793751 None:intergenic 45.0%
CTTCAGTCTCTGTTGTTCCA+AGG - chr4_2:48793739-48793758 None:intergenic 45.0%
CTTCTTTGGTCCATCTGAAC+AGG - chr4_2:48793966-48793985 None:intergenic 45.0%
TATGAGCGTGCCTTAACGAA+TGG + chr4_2:48794003-48794022 Msa0603870:CDS 45.0%
GGGGTTTCGAAAGCTAAAAC+TGG + chr4_2:48794090-48794109 Msa0603870:CDS 45.0%
!! CAGCACCAGAAAGTGTCAAA+TGG - chr4_2:48794132-48794151 None:intergenic 45.0%
! TTTTGTCAATCACGCGACAG+TGG + chr4_2:48794983-48795002 Msa0603870:CDS 45.0%
TACGGACCTTATCTTCTTGC+CGG + chr4_2:48795216-48795235 Msa0603870:CDS 45.0%
TTTGATGTCCCAATTTCCGG+TGG - chr4_2:48795247-48795266 None:intergenic 45.0%
! GGCTTTGATGTCCCAATTTC+CGG - chr4_2:48795250-48795269 None:intergenic 45.0%
GGAAATTGGGACATCAAAGC+CGG + chr4_2:48795249-48795268 Msa0603870:CDS 45.0%
TGCAACAGCTTTGCTAGAAC+CGG - chr4_2:48795271-48795290 None:intergenic 45.0%
!! TAAGAGGTTGGTCTGGTTCT+TGG - chr4_2:48795530-48795549 None:intergenic 45.0%
TGTTGTAGATTCCTCCCTTG+GGG + chr4_2:48795551-48795570 Msa0603870:CDS 45.0%
!! TTTTCTTGTGGTACCGGGTT+TGG + chr4_2:48795587-48795606 Msa0603870:CDS 45.0%
GTGTATAGCGATATGAGCTC+TGG + chr4_2:48795663-48795682 Msa0603870:CDS 45.0%
!! TGCAAGTCTGATTCTGAAGC+TGG + chr4_2:48795705-48795724 Msa0603870:CDS 45.0%
CAAGCAGCAAGTTTCGTTTC+CGG + chr4_2:48795735-48795754 Msa0603870:CDS 45.0%
AAGCAGCAAGTTTCGTTTCC+GGG + chr4_2:48795736-48795755 Msa0603870:CDS 45.0%
TCGTTTCCGGGAAAGGATTA+AGG + chr4_2:48795748-48795767 Msa0603870:CDS 45.0%
TAGCCACAAAGCTGATAGGA+TGG - chr4_2:48795779-48795798 None:intergenic 45.0%
CCTTTAGCCACAAAGCTGAT+AGG - chr4_2:48795783-48795802 None:intergenic 45.0%
! CCTATCAGCTTTGTGGCTAA+AGG + chr4_2:48795780-48795799 Msa0603870:CDS 45.0%
! ATCAGCTTTGTGGCTAAAGG+AGG + chr4_2:48795783-48795802 Msa0603870:CDS 45.0%
!!! AAAATTTCAAAAATAATTTT+GGG - chr4_2:48793048-48793067 None:intergenic 5.0%
!! TTTACTTATTTATTAATAAT+TGG + chr4_2:48796339-48796358 Msa0603870:intron 5.0%
CCTCTGATGAAAGACGTGTC+TGG - chr4_2:48790068-48790087 None:intergenic 50.0%
CCAGACACGTCTTTCATCAG+AGG + chr4_2:48790065-48790084 Msa0603870:five_prime_UTR 50.0%
CGAAACGTATGCGACTGAGT+CGG - chr4_2:48790787-48790806 None:intergenic 50.0%
CGACTCAGTCGCATACGTTT+CGG + chr4_2:48790785-48790804 Msa0603870:CDS 50.0%
ACCGACCGATGAATCTGCTT+GGG + chr4_2:48790873-48790892 Msa0603870:CDS 50.0%
AGCTGCCCAAGCAGATTCAT+CGG - chr4_2:48790881-48790900 None:intergenic 50.0%
GGTGTGTTTAAGCCACCTGT+TGG + chr4_2:48790976-48790995 Msa0603870:CDS 50.0%
AAGTTCCACTTGGGGATGTG+AGG + chr4_2:48791010-48791029 Msa0603870:CDS 50.0%
TGGTACACCGTATGGAGGAT+GGG + chr4_2:48791149-48791168 Msa0603870:CDS 50.0%
AGTGGTCGTGGTAACAGTTG+TGG + chr4_2:48791341-48791360 Msa0603870:intron 50.0%
! ATTGGTTCCTGTTTGGGGGA+GGG - chr4_2:48791662-48791681 None:intergenic 50.0%
! GAGCCGACATTTTCTCCTTC+AGG - chr4_2:48792015-48792034 None:intergenic 50.0%
GTGTAATAGGGAGCCCAAAC+AGG - chr4_2:48792133-48792152 None:intergenic 50.0%
TCTTCTCACAGCTATGCGAC+TGG + chr4_2:48793502-48793521 Msa0603870:CDS 50.0%
TTTCACGGCACCTGTTCAGA+TGG + chr4_2:48793953-48793972 Msa0603870:CDS 50.0%
!! GACACTTTCTGGTGCTGCTA+CGG + chr4_2:48794135-48794154 Msa0603870:CDS 50.0%
GCTCACTCAGACAGTTGTTC+CGG + chr4_2:48794434-48794453 Msa0603870:CDS 50.0%
AGTTGTTCCGGCTGCTTCAT+CGG + chr4_2:48794446-48794465 Msa0603870:CDS 50.0%
GAGTACCTCACTAGGTGAGA+AGG - chr4_2:48794496-48794515 None:intergenic 50.0%
ACTTTATCTTTGCCCGCTCC+AGG + chr4_2:48794737-48794756 Msa0603870:CDS 50.0%
ATACAGACTCAGACCTGGAG+CGG - chr4_2:48794753-48794772 None:intergenic 50.0%
TTGAAGGGTCAGCTTGTCAC+CGG - chr4_2:48795013-48795032 None:intergenic 50.0%
GTGTGACCGGCAAGAAGATA+AGG - chr4_2:48795225-48795244 None:intergenic 50.0%
CTAGCAAAGCTGTTGCAGAC+TGG + chr4_2:48795274-48795293 Msa0603870:CDS 50.0%
GTTGTAGATTCCTCCCTTGG+GGG + chr4_2:48795552-48795571 Msa0603870:CDS 50.0%
TTGTAGATTCCTCCCTTGGG+GGG + chr4_2:48795553-48795572 Msa0603870:CDS 50.0%
! AGCGATATGAGCTCTGGTTC+AGG + chr4_2:48795669-48795688 Msa0603870:CDS 50.0%
CTGGTTCAGGAGTTAAGCTC+AGG + chr4_2:48795682-48795701 Msa0603870:CDS 50.0%
!! CGGAAACGAAACTTGCTGCT+TGG - chr4_2:48795737-48795756 None:intergenic 50.0%
GCAAGTTTCGTTTCCGGGAA+AGG + chr4_2:48795741-48795760 Msa0603870:CDS 50.0%
GGGTGGCAAAATGGGATGAT+TGG + chr4_2:48796053-48796072 Msa0603870:intron 50.0%
!! AATTGGAAGTGGTGGTGGTC+AGG + chr4_2:48796356-48796375 Msa0603870:intron 50.0%
!! ATTGGAAGTGGTGGTGGTCA+GGG + chr4_2:48796357-48796376 Msa0603870:intron 50.0%
GGTGATCGCTATCCTATGTC+TGG + chr4_2:48796421-48796440 Msa0603870:three_prime_UTR 50.0%
GATCGCTATCCTATGTCTGG+TGG + chr4_2:48796424-48796443 Msa0603870:three_prime_UTR 50.0%
CACCGACCGATGAATCTGCT+TGG + chr4_2:48790872-48790891 Msa0603870:CDS 55.0%
GCCCAAGCAGATTCATCGGT+CGG - chr4_2:48790877-48790896 None:intergenic 55.0%
CTTGGGCAGCTTTGCTTCCA+AGG + chr4_2:48790890-48790909 Msa0603870:CDS 55.0%
AGCAACCTCACATCCCCAAG+TGG - chr4_2:48791018-48791037 None:intergenic 55.0%
GGGGATGTGAGGTTGCTTGA+AGG + chr4_2:48791021-48791040 Msa0603870:CDS 55.0%
CCATACGGTGTACCAGGAGT+CGG - chr4_2:48791144-48791163 None:intergenic 55.0%
ACTCCTGGTACACCGTATGG+AGG + chr4_2:48791144-48791163 Msa0603870:CDS 55.0%
CATCCTCCATACGGTGTACC+AGG - chr4_2:48791150-48791169 None:intergenic 55.0%
CTGGTACACCGTATGGAGGA+TGG + chr4_2:48791148-48791167 Msa0603870:CDS 55.0%
TACACCGTATGGAGGATGGG+AGG + chr4_2:48791152-48791171 Msa0603870:CDS 55.0%
GGTTCCTCCCATCCTCCATA+CGG - chr4_2:48791159-48791178 None:intergenic 55.0%
TTGGTTCCTGTTTGGGGGAG+GGG - chr4_2:48791661-48791680 None:intergenic 55.0%
!! CATTGGTTCCTGTTTGGGGG+AGG - chr4_2:48791663-48791682 None:intergenic 55.0%
TCTCACAGCTATGCGACTGG+AGG + chr4_2:48793505-48793524 Msa0603870:CDS 55.0%
CTCACAGCTATGCGACTGGA+GGG + chr4_2:48793506-48793525 Msa0603870:CDS 55.0%
CTATGCGACTGGAGGGACAT+CGG + chr4_2:48793513-48793532 Msa0603870:CDS 55.0%
!! TTCTGGTGCTGCTACGGAAC+CGG + chr4_2:48794141-48794160 Msa0603870:CDS 55.0%
TAAGGGTCCGATGAAGCAGC+CGG - chr4_2:48794456-48794475 None:intergenic 55.0%
CCATCAGCGTGAGTCCAAGA+TGG - chr4_2:48794692-48794711 None:intergenic 55.0%
CCATCTTGGACTCACGCTGA+TGG + chr4_2:48794689-48794708 Msa0603870:CDS 55.0%
TACAGACTCAGACCTGGAGC+GGG - chr4_2:48794752-48794771 None:intergenic 55.0%
CCAATTTCCGGTGGTGTGAC+CGG - chr4_2:48795238-48795257 None:intergenic 55.0%
CGGTCACACCACCGGAAATT+GGG + chr4_2:48795236-48795255 Msa0603870:CDS 55.0%
TGAAGAGCGACATCAGTGCC+AGG - chr4_2:48795420-48795439 None:intergenic 55.0%
AACTGAAGAAGGCCCCCCAA+GGG - chr4_2:48795568-48795587 None:intergenic 55.0%
AAACTGAAGAAGGCCCCCCA+AGG - chr4_2:48795569-48795588 None:intergenic 55.0%
! CTTGTGGTACCGGGTTTGGA+TGG + chr4_2:48795591-48795610 Msa0603870:CDS 55.0%
ACAGCTGCTGACCACAACTG+CGG - chr4_2:48796396-48796415 None:intergenic 55.0%
AGTTGTGGTCAGCAGCTGTG+TGG + chr4_2:48796397-48796416 Msa0603870:three_prime_UTR 55.0%
CGCTATCCTATGTCTGGTGG+TGG + chr4_2:48796427-48796446 Msa0603870:three_prime_UTR 55.0%
TGGAGCTTCAGGAAGACGGC+TGG + chr4_2:48791114-48791133 Msa0603870:CDS 60.0%
!! ACGGCTGGTTTACCGACTCC+TGG + chr4_2:48791129-48791148 Msa0603870:CDS 60.0%
CCGACTCCTGGTACACCGTA+TGG + chr4_2:48791141-48791160 Msa0603870:CDS 60.0%
TACCTACCCCTCCCCCAAAC+AGG + chr4_2:48791652-48791671 Msa0603870:intron 60.0%
TTCCTGTTTGGGGGAGGGGT+AGG - chr4_2:48791657-48791676 None:intergenic 60.0%
ACAGATCTTGGCCGGCCTGT+TGG + chr4_2:48792239-48792258 Msa0603870:intron 60.0%
GGACATCGGTCCGTGAGTTC+TGG + chr4_2:48793527-48793546 Msa0603870:CDS 60.0%
! GACTCACGCTGATGGTGCCA+AGG + chr4_2:48794697-48794716 Msa0603870:CDS 60.0%
ATCACGCGACAGTGGAGTGC+CGG + chr4_2:48794991-48795010 Msa0603870:CDS 60.0%
CTTCTTGCCGGTCACACCAC+CGG + chr4_2:48795228-48795247 Msa0603870:CDS 60.0%
CCGGTCACACCACCGGAAAT+TGG + chr4_2:48795235-48795254 Msa0603870:CDS 60.0%
GCGACATCAGTGCCAGGTTC+AGG - chr4_2:48795414-48795433 None:intergenic 60.0%
CAGCTGCTGACCACAACTGC+GGG - chr4_2:48796395-48796414 None:intergenic 60.0%
TGTGGTCAGCAGCTGTGTGG+TGG + chr4_2:48796400-48796419 Msa0603870:three_prime_UTR 60.0%
!! GGTGCTGCTACGGAACCGGT+AGG + chr4_2:48794145-48794164 Msa0603870:intron 65.0%
TGAAGAAGGCCCCCCAAGGG+AGG - chr4_2:48795565-48795584 None:intergenic 65.0%
! GGTGGTGGTCAGGGAGCTGC+TGG + chr4_2:48796366-48796385 Msa0603870:intron 70.0%
GGTGGTCAGGGAGCTGCTGG+CGG + chr4_2:48796369-48796388 Msa0603870:intron 70.0%
CTGCTGGCGGCCCGCAGTTG+TGG + chr4_2:48796382-48796401 Msa0603870:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 48790039 48796452 48790039 ID=Msa0603870;Name=Msa0603870
chr4_2 mRNA 48790039 48796452 48790039 ID=Msa0603870-mRNA-1;Parent=Msa0603870;Name=Msa0603870-mRNA-1;_AED=0.10;_eAED=0.10;_QI=545|1|1|1|0.84|0.71|14|126|847
chr4_2 exon 48790039 48790579 48790039 ID=Msa0603870-mRNA-1:exon:11242;Parent=Msa0603870-mRNA-1
chr4_2 exon 48790699 48791207 48790699 ID=Msa0603870-mRNA-1:exon:11243;Parent=Msa0603870-mRNA-1
chr4_2 exon 48791960 48792162 48791960 ID=Msa0603870-mRNA-1:exon:11244;Parent=Msa0603870-mRNA-1
chr4_2 exon 48792243 48792440 48792243 ID=Msa0603870-mRNA-1:exon:11245;Parent=Msa0603870-mRNA-1
chr4_2 exon 48792640 48792711 48792640 ID=Msa0603870-mRNA-1:exon:11246;Parent=Msa0603870-mRNA-1
chr4_2 exon 48793082 48793177 48793082 ID=Msa0603870-mRNA-1:exon:11247;Parent=Msa0603870-mRNA-1
chr4_2 exon 48793469 48793548 48793469 ID=Msa0603870-mRNA-1:exon:11248;Parent=Msa0603870-mRNA-1
chr4_2 exon 48793709 48793787 48793709 ID=Msa0603870-mRNA-1:exon:11249;Parent=Msa0603870-mRNA-1
chr4_2 exon 48793952 48794162 48793952 ID=Msa0603870-mRNA-1:exon:11250;Parent=Msa0603870-mRNA-1
chr4_2 exon 48794313 48794509 48794313 ID=Msa0603870-mRNA-1:exon:11251;Parent=Msa0603870-mRNA-1
chr4_2 exon 48794653 48794758 48794653 ID=Msa0603870-mRNA-1:exon:11252;Parent=Msa0603870-mRNA-1
chr4_2 exon 48794977 48795066 48794977 ID=Msa0603870-mRNA-1:exon:11253;Parent=Msa0603870-mRNA-1
chr4_2 exon 48795178 48795935 48795178 ID=Msa0603870-mRNA-1:exon:11254;Parent=Msa0603870-mRNA-1
chr4_2 exon 48796378 48796452 48796378 ID=Msa0603870-mRNA-1:exon:11255;Parent=Msa0603870-mRNA-1
chr4_2 five_prime_UTR 48790039 48790579 48790039 ID=Msa0603870-mRNA-1:five_prime_utr;Parent=Msa0603870-mRNA-1
chr4_2 five_prime_UTR 48790699 48790702 48790699 ID=Msa0603870-mRNA-1:five_prime_utr;Parent=Msa0603870-mRNA-1
chr4_2 CDS 48790703 48791207 48790703 ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1
chr4_2 CDS 48791960 48792162 48791960 ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1
chr4_2 CDS 48792243 48792440 48792243 ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1
chr4_2 CDS 48792640 48792711 48792640 ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1
chr4_2 CDS 48793082 48793177 48793082 ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1
chr4_2 CDS 48793469 48793548 48793469 ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1
chr4_2 CDS 48793709 48793787 48793709 ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1
chr4_2 CDS 48793952 48794162 48793952 ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1
chr4_2 CDS 48794313 48794509 48794313 ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1
chr4_2 CDS 48794653 48794758 48794653 ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1
chr4_2 CDS 48794977 48795066 48794977 ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1
chr4_2 CDS 48795178 48795884 48795178 ID=Msa0603870-mRNA-1:cds;Parent=Msa0603870-mRNA-1
chr4_2 three_prime_UTR 48795885 48795935 48795885 ID=Msa0603870-mRNA-1:three_prime_utr;Parent=Msa0603870-mRNA-1
chr4_2 three_prime_UTR 48796378 48796452 48796378 ID=Msa0603870-mRNA-1:three_prime_utr;Parent=Msa0603870-mRNA-1
Gene Sequence

>Msa0603870

ATGAAGGTTTTTGTGTTTATGTTTATGGTTATGACACTTATGCTGCGTGGTTGTGTTACTATTAAGGAATGCACAAACATTCCGACTCAGTCGCATACGTTTCGGTATGAGCTATTTGCATCAAAGAATGAGACATGGAAGAAAGAAGTGATGTCTCATTATCATGTGACACCGACCGATGAATCTGCTTGGGCAGCTTTGCTTCCAAGGAAGATCTTATCAGAAGAAAACCAACATGATTGGGCTTTAATGTATAGGAAAATTAAGAATTTGGGTGTGTTTAAGCCACCTGTTGGATTTCTCAAAGAAGTTCCACTTGGGGATGTGAGGTTGCTTGAAGGTTCTATCCATGCTCAAGCACAGAAGACTAATTTGGAGTATTTGTTGATGTTAGATGTTGATAGGTTGATTTGGAGCTTCAGGAAGACGGCTGGTTTACCGACTCCTGGTACACCGTATGGAGGATGGGAGGAACCTAATACCGAACTCAGAGGACATTTTGTTGGGCATTACTTGAGTGCATCAGCTCTAATGTGGGCCAGCACAAAGAATGATAGCCTGAAGGAGAAAATGTCGGCTCTTGTTGCCGGTCTATCCGCTTGTCAAGAAAAAATTGGAACAGGATATCTCTCTGCATTTCCGCCAGAGTTTTTTGATCGATTTGAAAATATTCAACCTGTTTGGGCTCCCTATTACACCATTCACAAGATCTTGGCCGGCCTGTTGGATCAATATACTGTAGCTGGAAACCCTCAAGCTCTCAAAATGGTGACATGGATGGTCGATTACTTTTACGACCGAGTGGTGAATGTTATATCGAAGTACACTGTAAATAGACACTATCAATCACTGAATGAGGAAACTGGAGGAATGAATGATGTTCTTTACAAATTATATAGTGTAACGGGGGATTCAAAGCATCTATTGTTGGCTCACCTTTTCGACAAGCCATGCTTTTTAGGATTGCTTGCCGTACAGGCTAATGACATAGCTGATTTTCATGCTAATACACATATCCCAATTGTTGTTGGATCCCAAATGCGGTATGAAGTCACAGGTGATCCACTTTATAGGGAAATCGGATCATTCTTTATGGAAATTGTAAACTCTTCTCACAGCTATGCGACTGGAGGGACATCGGTCCGTGAGTTCTGGAGTAATCCAAAGAGAATAGCCGACAACCTTGGAACAACAGAGACTGAAGAATCATGCACAACTTATAATATGTTGAAGGTTTCACGGCACCTGTTCAGATGGACCAAAGAAGTCACTTATGCAGATTATTATGAGCGTGCCTTAACGAATGGTGTACTCAGTATTCAAAGAGGAACAGATCCTGGTGTGATGATTTATATGCTTCCTTTAGGTATTGGGGTTTCGAAAGCTAAAACTGGACATAGTTGGGGAAATCCATTTGACACTTTCTGGTGCTGCTACGGAACCGGAATTGAATCATTCTCAAAGCTGGGAGATTCTATCTATTTTGAAGAGGAAGGGAATAATCCTAGTCTATACATCATTCAGTACATATCAAGCTCATTTAATTGGAAATCTGGGAAAATTTTGCTCACTCAGACAGTTGTTCCGGCTGCTTCATCGGACCCTTACCTACGAGTGACATTTACCTTCTCACCTAGTGAGAAAACTGGGACTTCGTCAACATTGAACTTTCGTCTACCATCTTGGACTCACGCTGATGGTGCCAAGGCGATATTGAATTCTGAAACTTTATCTTTGCCCGCTCCAGGGAATTTTTTGTCAATCACGCGACAGTGGAGTGCCGGTGACAAGCTGACCCTTCAATTGCCTCTTATCATCAGAACAGAAGCCATAAAAGATGACCGACCTGAATATGCATCAGTTCAAGCAATTCTCTACGGACCTTATCTTCTTGCCGGTCACACCACCGGAAATTGGGACATCAAAGCCGGTTCTAGCAAAGCTGTTGCAGACTGGATTACTCCAATTCCATCCAGTTACAATAGCAACCTAGTTTCTTTTTCACAAGACTTTGATAAATCAACTTTTGTTATAACAAACTCAAACCAATCACTTACAATGCAAAAATCACCTGAACCTGGCACTGATGTCGCTCTTCAAGCTACCTTTAGACTTATCCTAAAAGGTGCTGCTAGTAAAACTGTGATGCTAGAACCAATTAATCTTCCTGGAATGATTGTAAGTCACCAAGAACCAGACCAACCTCTTATTGTTGTAGATTCCTCCCTTGGGGGGCCTTCTTCAGTTTTTCTTGTGGTACCGGGTTTGGATGGACAAAATCAAACAATATCTTTACAATCACAAAGCAATAAAGATTGTTACGTGTATAGCGATATGAGCTCTGGTTCAGGAGTTAAGCTCAGGTGCAAGTCTGATTCTGAAGCTGGTTTTAACCAAGCAGCAAGTTTCGTTTCCGGGAAAGGATTAAGGCAATACCATCCTATCAGCTTTGTGGCTAAAGGAGGAAACCAGAATTTTCTTCTAGAGCCATTATTCAACTTCAGGGATGAGCACTATACAGTTTATTTCAACATTCAAGGTTGA

Protein sequence

>Msa0603870

MKVFVFMFMVMTLMLRGCVTIKECTNIPTQSHTFRYELFASKNETWKKEVMSHYHVTPTDESAWAALLPRKILSEENQHDWALMYRKIKNLGVFKPPVGFLKEVPLGDVRLLEGSIHAQAQKTNLEYLLMLDVDRLIWSFRKTAGLPTPGTPYGGWEEPNTELRGHFVGHYLSASALMWASTKNDSLKEKMSALVAGLSACQEKIGTGYLSAFPPEFFDRFENIQPVWAPYYTIHKILAGLLDQYTVAGNPQALKMVTWMVDYFYDRVVNVISKYTVNRHYQSLNEETGGMNDVLYKLYSVTGDSKHLLLAHLFDKPCFLGLLAVQANDIADFHANTHIPIVVGSQMRYEVTGDPLYREIGSFFMEIVNSSHSYATGGTSVREFWSNPKRIADNLGTTETEESCTTYNMLKVSRHLFRWTKEVTYADYYERALTNGVLSIQRGTDPGVMIYMLPLGIGVSKAKTGHSWGNPFDTFWCCYGTGIESFSKLGDSIYFEEEGNNPSLYIIQYISSSFNWKSGKILLTQTVVPAASSDPYLRVTFTFSPSEKTGTSSTLNFRLPSWTHADGAKAILNSETLSLPAPGNFLSITRQWSAGDKLTLQLPLIIRTEAIKDDRPEYASVQAILYGPYLLAGHTTGNWDIKAGSSKAVADWITPIPSSYNSNLVSFSQDFDKSTFVITNSNQSLTMQKSPEPGTDVALQATFRLILKGAASKTVMLEPINLPGMIVSHQEPDQPLIVVDSSLGGPSSVFLVVPGLDGQNQTISLQSQSNKDCYVYSDMSSGSGVKLRCKSDSEAGFNQAASFVSGKGLRQYHPISFVAKGGNQNFLLEPLFNFRDEHYTVYFNIQG*