AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0094990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094990 MtrunA17_Chr4g0000321 89.247 279 22 3 1 278 1 272 3.19e-178 491
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094990 AT2G46910.1 70.356 253 68 3 32 277 30 282 3.36e-123 353

Find 81 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATATTATCTGAGTTATT+TGG 0.204203 1_2:-78408322 Msa0094990:CDS
TTTGGATGATAATATGCTTT+TGG 0.254717 1_2:-78408304 Msa0094990:CDS
TCCAACTTGTTAAAATCAAT+TGG 0.289643 1_2:+78410923 None:intergenic
GGAATTACCTCAAACAAATT+AGG 0.299344 1_2:+78410637 None:intergenic
ATAATGTGTTCTTTAATTGC+TGG 0.306537 1_2:+78407922 None:intergenic
GAAACTGAAGGTAAATATTT+CGG 0.318032 1_2:+78409259 None:intergenic
ATAAGCCGTGGTTGAGGAAT+TGG 0.329110 1_2:-78408163 Msa0094990:three_prime_UTR
GGAATTCTCATCATTGTATA+AGG 0.343085 1_2:-78408096 Msa0094990:three_prime_UTR
AGAGTCCTCTTTGTGTGTCT+TGG 0.357425 1_2:+78411114 None:intergenic
AAAGATCGTGGTAGTATTGC+TGG 0.362518 1_2:+78408749 None:intergenic
CAATTTCCCGTGAGGGATCC+TGG 0.375960 1_2:-78408446 Msa0094990:CDS
TTGAGTTGGAGAAATGGATT+TGG 0.379150 1_2:-78411421 Msa0094990:exon
CACCACTATGCATTAATAAT+AGG 0.383426 1_2:-78411362 Msa0094990:CDS
GGCCGTGCTGTTGGTGGAGG+AGG 0.385119 1_2:-78408282 Msa0094990:CDS
TAAGCTTCTCGTTCCTTCTC+TGG 0.389022 1_2:+78411453 None:intergenic
CATTGTAACTGTAGAGTGTA+TGG 0.400357 1_2:+78411334 None:intergenic
GAGAATTCCTTGTGGACTAT+AGG 0.403316 1_2:+78408110 None:intergenic
CCATCATATATATACCTTCC+AGG 0.410693 1_2:+78408428 None:intergenic
TTGGGCCGTGCTGTTGGTGG+AGG 0.425794 1_2:-78408285 Msa0094990:CDS
GCTTAGCTTGGCAGTTGAGT+TGG 0.428513 1_2:-78411435 Msa0094990:five_prime_UTR
GAGCATTCCTAATTTGTTTG+AGG 0.430425 1_2:-78410644 Msa0094990:intron
TGGAAGAGAATGAGAACATC+AGG 0.437458 1_2:+78410869 None:intergenic
TGGCAGTTGAGTTGGAGAAA+TGG 0.444921 1_2:-78411427 Msa0094990:exon
ACAGTTACAATGTTAATAGA+AGG 0.448234 1_2:-78411323 Msa0094990:CDS
TCTTCAACGTTCTTCTATTG+AGG 0.448829 1_2:-78411081 Msa0094990:CDS
CCAACTTGTTAAAATCAATT+GGG 0.453481 1_2:+78410924 None:intergenic
TTAACAAGTTGGATGGAACT+TGG 0.462758 1_2:-78410913 Msa0094990:CDS
ATAAGGCAATAATATGCTAT+TGG 0.468591 1_2:-78408079 Msa0094990:three_prime_UTR
CTCCTATTATTAATGCATAG+TGG 0.475506 1_2:+78411360 None:intergenic
GACCGATACAAGAGTGAACT+TGG 0.486559 1_2:+78409281 None:intergenic
CACTCGATAAGCCGTGGTTG+AGG 0.492755 1_2:-78408169 Msa0094990:three_prime_UTR
GGATACAGTACTTGAAAGAA+AGG 0.499312 1_2:+78410830 None:intergenic
AGATTGCATAGCCATGGAAA+TGG 0.503286 1_2:+78411290 None:intergenic
CAAAGAACGCCGCGAGCGTA+AGG 0.505693 1_2:-78411482 Msa0094990:five_prime_UTR
TGGTTGAGGAATTGGACATA+TGG 0.507094 1_2:-78408155 Msa0094990:three_prime_UTR
TTATTCGCAATGTTGTCCGC+TGG 0.516151 1_2:-78410666 Msa0094990:CDS
CAAAGCTCAATTTCCCGTGA+GGG 0.519679 1_2:-78408453 Msa0094990:CDS
AAATATTAGTGAACAACTGC+AGG 0.525549 1_2:-78408783 Msa0094990:CDS
TATGCAATCTGCTGTTACCC+AGG 0.526237 1_2:-78411277 Msa0094990:intron
ATTGCGAATAACACCTCCAT+TGG 0.531951 1_2:+78410678 None:intergenic
AAGGAAGATTAGCAGCAGCT+TGG 0.532811 1_2:+78410849 None:intergenic
CACCTCCATTGGAGCTATCA+CGG 0.533190 1_2:+78410689 None:intergenic
TGCCAAGTTCACTCTTGTAT+CGG 0.542599 1_2:-78409283 Msa0094990:CDS
ATGGAGAGGAAGAAATAGAC+TGG 0.545081 1_2:-78408136 Msa0094990:three_prime_UTR
GGAACAAGAAGGTGCTACAT+TGG 0.551537 1_2:-78409313 Msa0094990:CDS
GAAATCAAAATCCATTTCCA+TGG 0.552738 1_2:-78411301 Msa0094990:CDS
AACAGCAGATTGCATAGCCA+TGG 0.553271 1_2:+78411284 None:intergenic
CGTAAGGAGTGTACCAGAGA+AGG 0.555677 1_2:-78411466 Msa0094990:five_prime_UTR
GTCAGGTGAATGTGGAAGGA+AGG 0.565736 1_2:-78410958 Msa0094990:intron
TTCTGTCAGGTGAATGTGGA+AGG 0.566123 1_2:-78410962 Msa0094990:intron
TACCTTCCAGGATCCCTCAC+GGG 0.569268 1_2:+78408440 None:intergenic
CTACTTCTGTCAGGTGAATG+TGG 0.570625 1_2:-78410966 Msa0094990:intron
TTGGATTGTAGGGAATCAGT+AGG 0.573551 1_2:-78408348 Msa0094990:intron
GATTGTAGGGAATCAGTAGG+AGG 0.575346 1_2:-78408345 Msa0094990:intron
GAATGCCGTGATAGCTCCAA+TGG 0.576112 1_2:-78410694 Msa0094990:CDS
AAGGAACGAGAAGCTTAGCT+TGG 0.578059 1_2:-78411447 Msa0094990:five_prime_UTR
GAAATTGAGCTTTGAAAGCA+CGG 0.585966 1_2:+78408462 None:intergenic
GAATGTGGAAGGAAGGAACA+TGG 0.586118 1_2:-78410951 Msa0094990:CDS
TCAATAGAAGAACGTTGAAG+AGG 0.588804 1_2:+78411083 None:intergenic
TGATTACCTCTTGAAACTGA+AGG 0.594547 1_2:+78409247 None:intergenic
TATTTACCTTCAGTTTCAAG+AGG 0.595839 1_2:-78409253 Msa0094990:intron
ATTATTTGAGCTGTGAATTG+TGG 0.600446 1_2:-78407904 Msa0094990:three_prime_UTR
TTCCCGTGAGGGATCCTGGA+AGG 0.606634 1_2:-78408442 Msa0094990:intron
CTGGAGGCCTATAGTCCACA+AGG 0.607285 1_2:-78408117 Msa0094990:three_prime_UTR
ATACCTTCCAGGATCCCTCA+CGG 0.609419 1_2:+78408439 None:intergenic
TTATTAATGCATAGTGGTGG+TGG 0.610336 1_2:+78411366 None:intergenic
ACAAATTAGGAATGCTCCAG+CGG 0.613575 1_2:+78410650 None:intergenic
TCTCTCCAAGACACACAAAG+AGG 0.636026 1_2:-78411119 Msa0094990:CDS
TGCAAACTTATAAAAGATCG+TGG 0.636201 1_2:+78408737 None:intergenic
TCAAAGCTCAATTTCCCGTG+AGG 0.649088 1_2:-78408454 Msa0094990:CDS
TGGTACACTCCTTACGCTCG+CGG 0.649440 1_2:+78411473 None:intergenic
GAGGAATTGGACATATGGAG+AGG 0.653797 1_2:-78408150 Msa0094990:three_prime_UTR
CTATTATTAATGCATAGTGG+TGG 0.657145 1_2:+78411363 None:intergenic
AATGTGGAAGGAAGGAACAT+GGG 0.663999 1_2:-78410950 Msa0094990:CDS
CTCCTCCTCCACCAACAGCA+CGG 0.664017 1_2:+78408280 None:intergenic
CAGTAACACTCGATAAGCCG+TGG 0.675508 1_2:-78408175 Msa0094990:three_prime_UTR
TATGTCCAATTCCTCAACCA+CGG 0.683624 1_2:+78408158 None:intergenic
ACATTGGTGCAGGAACAAGA+AGG 0.688213 1_2:-78409324 Msa0094990:intron
ACAATGATGAGAATTCCTTG+TGG 0.696408 1_2:+78408102 None:intergenic
GAGAGGAAGAAATAGACTGG+AGG 0.707122 1_2:-78408133 Msa0094990:three_prime_UTR
TGCCGTGATAGCTCCAATGG+AGG 0.729113 1_2:-78410691 Msa0094990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAACATGTAAAAAAA+TGG - chr1_2:78409826-78409845 Msa0094990:intron 10.0%
!! ATATAATAAAATATGGAAAT+GGG + chr1_2:78410318-78410337 None:intergenic 10.0%
!! AAGAAAGTGAAAAATAAAAA+TGG + chr1_2:78408606-78408625 None:intergenic 15.0%
!! AATTATATGTTGCAAAATAT+CGG + chr1_2:78410201-78410220 None:intergenic 15.0%
!!! TTCTCTTGTTATTAATTAAA+AGG - chr1_2:78410225-78410244 Msa0094990:intron 15.0%
!! TATAATAAAATATGGAAATG+GGG + chr1_2:78410317-78410336 None:intergenic 15.0%
!! CATATAATAAAATATGGAAA+TGG + chr1_2:78410319-78410338 None:intergenic 15.0%
!!! CATTTCCATATTTTATTATA+TGG - chr1_2:78410317-78410336 Msa0094990:intron 15.0%
!! GTAAACCATATAATAAAATA+TGG + chr1_2:78410325-78410344 None:intergenic 15.0%
!! ATTATATTATCTGAGTTATT+TGG - chr1_2:78411041-78411060 Msa0094990:intron 15.0%
!! AATAAATAAAAACTGTGTGA+TGG - chr1_2:78407858-78407877 Msa0094990:three_prime_UTR 20.0%
!!! TCATCATTCTTTAATTTTGA+AGG - chr1_2:78408177-78408196 Msa0094990:three_prime_UTR 20.0%
!! AGTAAGAAAGTAAAAAGTAA+AGG + chr1_2:78408750-78408769 None:intergenic 20.0%
!!! TTTCACAGTTTTTATCTTAA+AGG - chr1_2:78409179-78409198 Msa0094990:intron 20.0%
!!! TTCACAGTTTTTATCTTAAA+GGG - chr1_2:78409180-78409199 Msa0094990:intron 20.0%
!! AAATAGTATCATTACTCAAA+AGG - chr1_2:78409227-78409246 Msa0094990:intron 20.0%
!!! CTTGTTATTAATTAAAAGGT+TGG - chr1_2:78410229-78410248 Msa0094990:intron 20.0%
!!! TTTTCTTAATCTTAATGATG+GGG + chr1_2:78410444-78410463 None:intergenic 20.0%
!!! CTTTTCTTAATCTTAATGAT+GGG + chr1_2:78410445-78410464 None:intergenic 20.0%
!! GAATTAATTAGTGTCTTTAT+TGG - chr1_2:78410969-78410988 Msa0094990:intron 20.0%
!!! AATTCATTTTATTTGAAGCT+TGG - chr1_2:78411507-78411526 Msa0094990:five_prime_UTR 20.0%
! ACAGTTACAATGTTAATAGA+AGG - chr1_2:78408040-78408059 Msa0094990:three_prime_UTR 25.0%
! CTATGTATGCATAATTAGAA+TGG + chr1_2:78408125-78408144 None:intergenic 25.0%
! CATACATAGATAGATTGATT+GGG - chr1_2:78408136-78408155 Msa0094990:three_prime_UTR 25.0%
!!! CCAACTTGTTAAAATCAATT+GGG + chr1_2:78408442-78408461 None:intergenic 25.0%
!!! TCCAACTTGTTAAAATCAAT+TGG + chr1_2:78408443-78408462 None:intergenic 25.0%
!!! ATTGATTTTAACAAGTTGGA+TGG - chr1_2:78408443-78408462 Msa0094990:CDS 25.0%
! AAATGGTAAGAAAGAAAAGA+GGG + chr1_2:78408589-78408608 None:intergenic 25.0%
! AAAATGGTAAGAAAGAAAAG+AGG + chr1_2:78408590-78408609 None:intergenic 25.0%
! AAGAATGATCATAGTTATCT+GGG + chr1_2:78408811-78408830 None:intergenic 25.0%
! TAAGAATGATCATAGTTATC+TGG + chr1_2:78408812-78408831 None:intergenic 25.0%
! GAATAATCAAGTATGAATAG+AGG + chr1_2:78408895-78408914 None:intergenic 25.0%
! TATATAAGTATACTTCATCC+TGG - chr1_2:78409042-78409061 Msa0094990:intron 25.0%
!!! AATCTAGTTCCTTTTATTCT+AGG - chr1_2:78409262-78409281 Msa0094990:CDS 25.0%
! AATAATATTCCACTTCTCAA+AGG + chr1_2:78409388-78409407 None:intergenic 25.0%
! GAATATTATTAAGCACTAGA+GGG - chr1_2:78409398-78409417 Msa0094990:intron 25.0%
! TTAGCTCATTAATATCTTCT+AGG - chr1_2:78409558-78409577 Msa0094990:intron 25.0%
!! TAATATCTTCTAGGAGAATT+CGG - chr1_2:78409567-78409586 Msa0094990:intron 25.0%
! ATATCTAAATGTTCTCAAGA+TGG + chr1_2:78409775-78409794 None:intergenic 25.0%
! ACTTAAGCTTAATTAGTTCA+GGG + chr1_2:78409975-78409994 None:intergenic 25.0%
! GAAACTGAAGGTAAATATTT+CGG + chr1_2:78410107-78410126 None:intergenic 25.0%
!! GCATGAACATTTTATTACTT+TGG - chr1_2:78410148-78410167 Msa0094990:intron 25.0%
!! AATCTGATTTGTCATTATGA+TGG - chr1_2:78410398-78410417 Msa0094990:intron 25.0%
!! CCTTTTCTTAATCTTAATGA+TGG + chr1_2:78410446-78410465 None:intergenic 25.0%
! CCATCATTAAGATTAAGAAA+AGG - chr1_2:78410443-78410462 Msa0094990:intron 25.0%
! ACAAATGAGCAATTTATAAC+TGG - chr1_2:78410537-78410556 Msa0094990:intron 25.0%
! AAATGCAACAGATTAAACTA+CGG + chr1_2:78410662-78410681 None:intergenic 25.0%
! TCATAAGTTATTAGTGTCAA+TGG + chr1_2:78410727-78410746 None:intergenic 25.0%
!! TTTGGTGATATATTTGTGAA+CGG - chr1_2:78410772-78410791 Msa0094990:intron 25.0%
!! TTTGGATGATAATATGCTTT+TGG - chr1_2:78411059-78411078 Msa0094990:intron 25.0%
!! TTGGATGATAATATGCTTTT+GGG - chr1_2:78411060-78411079 Msa0094990:intron 25.0%
! ATAAGGCAATAATATGCTAT+TGG - chr1_2:78411284-78411303 Msa0094990:CDS 25.0%
!!! TATTTGAACTTGCTACTTTT+TGG - chr1_2:78411315-78411334 Msa0094990:CDS 25.0%
! ATAATGTGTTCTTTAATTGC+TGG + chr1_2:78411444-78411463 None:intergenic 25.0%
CTATTATTAATGCATAGTGG+TGG + chr1_2:78408003-78408022 None:intergenic 30.0%
CACCACTATGCATTAATAAT+AGG - chr1_2:78408001-78408020 Msa0094990:three_prime_UTR 30.0%
CTCCTATTATTAATGCATAG+TGG + chr1_2:78408006-78408025 None:intergenic 30.0%
GAAATCAAAATCCATTTCCA+TGG - chr1_2:78408062-78408081 Msa0094990:three_prime_UTR 30.0%
GCATACATAGATAGATTGAT+TGG - chr1_2:78408135-78408154 Msa0094990:three_prime_UTR 30.0%
ATAATCATTCTACTTCTGTC+AGG - chr1_2:78408388-78408407 Msa0094990:intron 30.0%
!! CCCAATTGATTTTAACAAGT+TGG - chr1_2:78408439-78408458 Msa0094990:intron 30.0%
GTAAGAAAGGAAGAAATAGA+TGG + chr1_2:78408557-78408576 None:intergenic 30.0%
AAAGAAAAGAGGGAAAATGA+TGG + chr1_2:78408579-78408598 None:intergenic 30.0%
GGAATTACCTCAAACAAATT+AGG + chr1_2:78408729-78408748 None:intergenic 30.0%
AGAATGATCATAGTTATCTG+GGG + chr1_2:78408810-78408829 None:intergenic 30.0%
ATAATATTGCGGAAATTGAG+GGG + chr1_2:78408856-78408875 None:intergenic 30.0%
CATAATATTGCGGAAATTGA+GGG + chr1_2:78408857-78408876 None:intergenic 30.0%
CTAAACTGTGCATAATATTG+CGG + chr1_2:78408867-78408886 None:intergenic 30.0%
!!! TTGCTAGGATTTGGTTTTTT+AGG - chr1_2:78409001-78409020 Msa0094990:intron 30.0%
AGTTGTGTAAATTAAAGACC+CGG - chr1_2:78409134-78409153 Msa0094990:intron 30.0%
!! TTAGTTTTTCCAACCATCTA+AGG + chr1_2:78409326-78409345 None:intergenic 30.0%
GATGGTTGGAAAAACTAAAT+TGG - chr1_2:78409328-78409347 Msa0094990:intron 30.0%
GGATGAAATACTTATTCTTG+AGG - chr1_2:78409349-78409368 Msa0094990:intron 30.0%
GGAATATTATTAAGCACTAG+AGG - chr1_2:78409397-78409416 Msa0094990:intron 30.0%
TCTTTGCTCGTAACTTATAT+TGG + chr1_2:78409440-78409459 None:intergenic 30.0%
TAAGTTACGAGCAAAGAAAA+CGG - chr1_2:78409443-78409462 Msa0094990:intron 30.0%
TGACCATATAGAAAACAACT+AGG - chr1_2:78409620-78409639 Msa0094990:intron 30.0%
GACCATATAGAAAACAACTA+GGG - chr1_2:78409621-78409640 Msa0094990:intron 30.0%
!! GGAATTTTGAGAAATCACAA+TGG + chr1_2:78409664-78409683 None:intergenic 30.0%
!! CAGCTTTTAGAAATCAGAAA+GGG + chr1_2:78409897-78409916 None:intergenic 30.0%
!! ACAGCTTTTAGAAATCAGAA+AGG + chr1_2:78409898-78409917 None:intergenic 30.0%
CTTAAGCTTAATTAGTTCAG+GGG + chr1_2:78409974-78409993 None:intergenic 30.0%
CACTTAAGCTTAATTAGTTC+AGG + chr1_2:78409976-78409995 None:intergenic 30.0%
TTCTTTGGTTGAGATAACAT+TGG - chr1_2:78410023-78410042 Msa0094990:intron 30.0%
TATTTACCTTCAGTTTCAAG+AGG - chr1_2:78410110-78410129 Msa0094990:intron 30.0%
TATCAAAAGCAAATTGAACG+TGG + chr1_2:78410264-78410283 None:intergenic 30.0%
TATTACTCCTCAAGAAATGT+TGG - chr1_2:78410345-78410364 Msa0094990:intron 30.0%
GAGCATAAAACATATATGCT+AGG - chr1_2:78410367-78410386 Msa0094990:intron 30.0%
AAATATTAGTGAACAACTGC+AGG - chr1_2:78410580-78410599 Msa0094990:intron 30.0%
TGCAAACTTATAAAAGATCG+TGG + chr1_2:78410629-78410648 None:intergenic 30.0%
! ACGATCTTTTATAAGTTTGC+AGG - chr1_2:78410628-78410647 Msa0094990:intron 30.0%
TCTGCATCAAATCAAAACTT+TGG - chr1_2:78410754-78410773 Msa0094990:intron 30.0%
CATGCAGATATATTACCATT+AGG + chr1_2:78410798-78410817 None:intergenic 30.0%
AATGGTAATATATCTGCATG+AGG - chr1_2:78410798-78410817 Msa0094990:intron 30.0%
! CTGGAAGGTATATATATGAT+GGG - chr1_2:78410936-78410955 Msa0094990:CDS 30.0%
! TTACGAGTATAATGCTCTTT+TGG - chr1_2:78410996-78411015 Msa0094990:intron 30.0%
! ATAATGCTCTTTTGGATTGT+AGG - chr1_2:78411004-78411023 Msa0094990:intron 30.0%
! TAATGCTCTTTTGGATTGTA+GGG - chr1_2:78411005-78411024 Msa0094990:intron 30.0%
GGAATTCTCATCATTGTATA+AGG - chr1_2:78411267-78411286 Msa0094990:intron 30.0%
ATTATTTGAGCTGTGAATTG+TGG - chr1_2:78411459-78411478 Msa0094990:five_prime_UTR 30.0%
!! TTGAGTTGGAGAAATGGATT+TGG - chr1_2:78407942-78407961 Msa0094990:three_prime_UTR 35.0%
TTATTAATGCATAGTGGTGG+TGG + chr1_2:78408000-78408019 None:intergenic 35.0%
CATTGTAACTGTAGAGTGTA+TGG + chr1_2:78408032-78408051 None:intergenic 35.0%
TCAATAGAAGAACGTTGAAG+AGG + chr1_2:78408283-78408302 None:intergenic 35.0%
TCTTCAACGTTCTTCTATTG+AGG - chr1_2:78408282-78408301 Msa0094990:CDS 35.0%
! TTAACAAGTTGGATGGAACT+TGG - chr1_2:78408450-78408469 Msa0094990:CDS 35.0%
GGATACAGTACTTGAAAGAA+AGG + chr1_2:78408536-78408555 None:intergenic 35.0%
AGGGAAAATGATGGTAAGAA+AGG + chr1_2:78408570-78408589 None:intergenic 35.0%
!! GAGCATTCCTAATTTGTTTG+AGG - chr1_2:78408719-78408738 Msa0094990:intron 35.0%
TATCTGGGGAAATCAAAAGT+AGG + chr1_2:78408796-78408815 None:intergenic 35.0%
TAATATTGCGGAAATTGAGG+GGG + chr1_2:78408855-78408874 None:intergenic 35.0%
GCATAATATTGCGGAAATTG+AGG + chr1_2:78408858-78408877 None:intergenic 35.0%
TTCTTTCTTAGAGTTCAAGC+TGG - chr1_2:78408912-78408931 Msa0094990:intron 35.0%
GTTGTGTAAATTAAAGACCC+GGG - chr1_2:78409135-78409154 Msa0094990:intron 35.0%
!! TTTTCCAACCATCTAAGGTT+AGG + chr1_2:78409321-78409340 None:intergenic 35.0%
ATTATTAAGCACTAGAGGGT+TGG - chr1_2:78409402-78409421 Msa0094990:intron 35.0%
AAGTTACGAGCAAAGAAAAC+GGG - chr1_2:78409444-78409463 Msa0094990:intron 35.0%
TCACGCTTATTTGATTCTCA+AGG - chr1_2:78409497-78409516 Msa0094990:intron 35.0%
TATTTGATTCTCAAGGAGCA+TGG - chr1_2:78409504-78409523 Msa0094990:intron 35.0%
AGCTAATGTACTTTCCAAAC+TGG + chr1_2:78409544-78409563 None:intergenic 35.0%
!! CTCCCTAGTTGTTTTCTATA+TGG + chr1_2:78409626-78409645 None:intergenic 35.0%
AAATGTTCTCAAGATGGATG+TGG + chr1_2:78409769-78409788 None:intergenic 35.0%
! CTATATCAAGTTAGCCTCAA+CGG - chr1_2:78409858-78409877 Msa0094990:intron 35.0%
GATTTAAAGATGAACCGTTG+AGG + chr1_2:78409875-78409894 None:intergenic 35.0%
! CAGCTTGAACATGTTTTCTT+TGG - chr1_2:78410008-78410027 Msa0094990:intron 35.0%
TGATTACCTCTTGAAACTGA+AGG + chr1_2:78410119-78410138 None:intergenic 35.0%
TAAAATATGGAAATGGGGCA+TGG + chr1_2:78410312-78410331 None:intergenic 35.0%
TTATGCTCCAACATTTCTTG+AGG + chr1_2:78410355-78410374 None:intergenic 35.0%
TATATTTGTGAACGGCCTAA+TGG - chr1_2:78410780-78410799 Msa0094990:intron 35.0%
!! GAAATTGAGCTTTGAAAGCA+CGG + chr1_2:78410904-78410923 None:intergenic 35.0%
CCATCATATATATACCTTCC+AGG + chr1_2:78410938-78410957 None:intergenic 35.0%
! CCTGGAAGGTATATATATGA+TGG - chr1_2:78410935-78410954 Msa0094990:CDS 35.0%
ACAATGATGAGAATTCCTTG+TGG + chr1_2:78411264-78411283 None:intergenic 35.0%
!!! ACTTGCTACTTTTTGGTTGA+AGG - chr1_2:78411322-78411341 Msa0094990:CDS 35.0%
!!! CTTGCTACTTTTTGGTTGAA+GGG - chr1_2:78411323-78411342 Msa0094990:CDS 35.0%
!!! TTGCTACTTTTTGGTTGAAG+GGG - chr1_2:78411324-78411343 Msa0094990:CDS 35.0%
AGATTGCATAGCCATGGAAA+TGG + chr1_2:78408076-78408095 None:intergenic 40.0%
ATGGAAACCTTACCTTACCT+GGG + chr1_2:78408106-78408125 None:intergenic 40.0%
AATGGAAACCTTACCTTACC+TGG + chr1_2:78408107-78408126 None:intergenic 40.0%
AATGTGGAAGGAAGGAACAT+GGG - chr1_2:78408413-78408432 Msa0094990:intron 40.0%
TGGAAGAGAATGAGAACATC+AGG + chr1_2:78408497-78408516 None:intergenic 40.0%
CTTTCCTTCTGTCATGAGAT+AGG - chr1_2:78408623-78408642 Msa0094990:intron 40.0%
ATTGCGAATAACACCTCCAT+TGG + chr1_2:78408688-78408707 None:intergenic 40.0%
ACAAATTAGGAATGCTCCAG+CGG + chr1_2:78408716-78408735 None:intergenic 40.0%
!! GGAACAAGTTGATTGCAAGA+AGG + chr1_2:78408775-78408794 None:intergenic 40.0%
GAAACTGCATATGCATTGCT+AGG - chr1_2:78408986-78409005 Msa0094990:intron 40.0%
GCATATGCATTGCTAGGATT+TGG - chr1_2:78408992-78409011 Msa0094990:intron 40.0%
AGTATACTTCATCCTGGACT+AGG - chr1_2:78409048-78409067 Msa0094990:intron 40.0%
ACGTTATTAGTTCCTAGTCC+AGG + chr1_2:78409063-78409082 None:intergenic 40.0%
AGTTACGAGCAAAGAAAACG+GGG - chr1_2:78409445-78409464 Msa0094990:intron 40.0%
CAGAGAATAACTGTCCAGTT+TGG - chr1_2:78409527-78409546 Msa0094990:intron 40.0%
TCTCAAAATTCCTCCACAAG+AGG - chr1_2:78409672-78409691 Msa0094990:intron 40.0%
TGGATGGATCTCATTCTACT+AGG + chr1_2:78409749-78409768 None:intergenic 40.0%
AAACATGTTCAAGCTGACGA+AGG + chr1_2:78410004-78410023 None:intergenic 40.0%
TGCCAAGTTCACTCTTGTAT+CGG - chr1_2:78410080-78410099 Msa0094990:intron 40.0%
GATGGGGAAGTGAAATTTCA+GGG + chr1_2:78410428-78410447 None:intergenic 40.0%
TGATGGGGAAGTGAAATTTC+AGG + chr1_2:78410429-78410448 None:intergenic 40.0%
AGCATCATACCAACCAAAGA+AGG + chr1_2:78410511-78410530 None:intergenic 40.0%
AAAGATCGTGGTAGTATTGC+TGG + chr1_2:78410617-78410636 None:intergenic 40.0%
TTGGATTGTAGGGAATCAGT+AGG - chr1_2:78411015-78411034 Msa0094990:intron 40.0%
TATGTCCAATTCCTCAACCA+CGG + chr1_2:78411208-78411227 None:intergenic 40.0%
TGGTTGAGGAATTGGACATA+TGG - chr1_2:78411208-78411227 Msa0094990:intron 40.0%
ATGGAGAGGAAGAAATAGAC+TGG - chr1_2:78411227-78411246 Msa0094990:intron 40.0%
! GAGAATTCCTTGTGGACTAT+AGG + chr1_2:78411256-78411275 None:intergenic 40.0%
!!! TACTTTTTGGTTGAAGGGGA+GGG - chr1_2:78411328-78411347 Msa0094990:CDS 40.0%
TAAGCTTCTCGTTCCTTCTC+TGG + chr1_2:78407913-78407932 None:intergenic 45.0%
AAGGAACGAGAAGCTTAGCT+TGG - chr1_2:78407916-78407935 Msa0094990:three_prime_UTR 45.0%
!! TGGCAGTTGAGTTGGAGAAA+TGG - chr1_2:78407936-78407955 Msa0094990:three_prime_UTR 45.0%
AACAGCAGATTGCATAGCCA+TGG + chr1_2:78408082-78408101 None:intergenic 45.0%
TATGCAATCTGCTGTTACCC+AGG - chr1_2:78408086-78408105 Msa0094990:three_prime_UTR 45.0%
AATCTGCTGTTACCCAGGTA+AGG - chr1_2:78408091-78408110 Msa0094990:three_prime_UTR 45.0%
TCTCTCCAAGACACACAAAG+AGG - chr1_2:78408244-78408263 Msa0094990:exon 45.0%
AGAGTCCTCTTTGTGTGTCT+TGG + chr1_2:78408252-78408271 None:intergenic 45.0%
CTACTTCTGTCAGGTGAATG+TGG - chr1_2:78408397-78408416 Msa0094990:intron 45.0%
TTCTGTCAGGTGAATGTGGA+AGG - chr1_2:78408401-78408420 Msa0094990:intron 45.0%
GAATGTGGAAGGAAGGAACA+TGG - chr1_2:78408412-78408431 Msa0094990:intron 45.0%
AAGGAAGATTAGCAGCAGCT+TGG + chr1_2:78408517-78408536 None:intergenic 45.0%
CCTTCTGTCATGAGATAGGT+CGG - chr1_2:78408627-78408646 Msa0094990:intron 45.0%
TTATTCGCAATGTTGTCCGC+TGG - chr1_2:78408697-78408716 Msa0094990:intron 45.0%
CAACTTGTCTACTGCGATGA+AGG + chr1_2:78409119-78409138 None:intergenic 45.0%
TTAGCTAGCATACGCAATCC+CGG + chr1_2:78409156-78409175 None:intergenic 45.0%
CGTGCGACTCCTAGAATAAA+AGG + chr1_2:78409274-78409293 None:intergenic 45.0%
ACACCTAGCCTAACCTTAGA+TGG - chr1_2:78409310-78409329 Msa0094990:CDS 45.0%
! CAACCATCTAAGGTTAGGCT+AGG + chr1_2:78409316-78409335 None:intergenic 45.0%
CTAGCCTAACCTTAGATGGT+TGG - chr1_2:78409314-78409333 Msa0094990:CDS 45.0%
! TTGCTCTCACCTTTGAGAAG+TGG - chr1_2:78409376-78409395 Msa0094990:intron 45.0%
ACCACTTCTTTGCTCAACTC+GGG + chr1_2:78409478-78409497 None:intergenic 45.0%
GACCACTTCTTTGCTCAACT+CGG + chr1_2:78409479-78409498 None:intergenic 45.0%
CACAATGGCCACTTCATCAA+CGG + chr1_2:78409649-78409668 None:intergenic 45.0%
GTAGGGGATCTCATTCTACT+AGG + chr1_2:78409708-78409727 None:intergenic 45.0%
AATGAGATCCCCTACACAAG+AGG - chr1_2:78409713-78409732 Msa0094990:intron 45.0%
GTTCTCAAGATGGATGTGGA+TGG + chr1_2:78409765-78409784 None:intergenic 45.0%
ATGTTCAAGCTGACGAAGGA+AGG + chr1_2:78410000-78410019 None:intergenic 45.0%
GGTTGAGATAACATTGGTGC+AGG - chr1_2:78410029-78410048 Msa0094990:intron 45.0%
ACATTGGTGCAGGAACAAGA+AGG - chr1_2:78410039-78410058 Msa0094990:intron 45.0%
!! GGAACAAGAAGGTGCTACAT+TGG - chr1_2:78410050-78410069 Msa0094990:intron 45.0%
GACCGATACAAGAGTGAACT+TGG + chr1_2:78410085-78410104 None:intergenic 45.0%
GAATGCGACATTGCCTTCTT+TGG - chr1_2:78410495-78410514 Msa0094990:intron 45.0%
ATTTGTGTGCACTGTCGTAC+TGG - chr1_2:78410685-78410704 Msa0094990:CDS 45.0%
TCAAAGCTCAATTTCCCGTG+AGG - chr1_2:78410909-78410928 Msa0094990:CDS 45.0%
CAAAGCTCAATTTCCCGTGA+GGG - chr1_2:78410910-78410929 Msa0094990:CDS 45.0%
GATTGTAGGGAATCAGTAGG+AGG - chr1_2:78411018-78411037 Msa0094990:intron 45.0%
ATAAGCCGTGGTTGAGGAAT+TGG - chr1_2:78411200-78411219 Msa0094990:intron 45.0%
GAGGAATTGGACATATGGAG+AGG - chr1_2:78411213-78411232 Msa0094990:intron 45.0%
GAGAGGAAGAAATAGACTGG+AGG - chr1_2:78411230-78411249 Msa0094990:intron 45.0%
!!! CTACTTTTTGGTTGAAGGGG+AGG - chr1_2:78411327-78411346 Msa0094990:CDS 45.0%
! CGTAAGGAGTGTACCAGAGA+AGG - chr1_2:78407897-78407916 Msa0094990:three_prime_UTR 50.0%
! GCTTAGCTTGGCAGTTGAGT+TGG - chr1_2:78407928-78407947 Msa0094990:three_prime_UTR 50.0%
GCTGTTACCCAGGTAAGGTA+AGG - chr1_2:78408096-78408115 Msa0094990:three_prime_UTR 50.0%
GTCAGGTGAATGTGGAAGGA+AGG - chr1_2:78408405-78408424 Msa0094990:intron 50.0%
CCGACCTATCTCATGACAGA+AGG + chr1_2:78408630-78408649 None:intergenic 50.0%
GAATGCCGTGATAGCTCCAA+TGG - chr1_2:78408669-78408688 Msa0094990:intron 50.0%
CACCTCCATTGGAGCTATCA+CGG + chr1_2:78408677-78408696 None:intergenic 50.0%
TAGCTAGCATACGCAATCCC+GGG + chr1_2:78409155-78409174 None:intergenic 50.0%
CGACACTTCCTCTTGTGTAG+GGG + chr1_2:78409724-78409743 None:intergenic 50.0%
GCGACACTTCCTCTTGTGTA+GGG + chr1_2:78409725-78409744 None:intergenic 50.0%
AGCGACACTTCCTCTTGTGT+AGG + chr1_2:78409726-78409745 None:intergenic 50.0%
GCGACATTGCCTTCTTTGGT+TGG - chr1_2:78410499-78410518 Msa0094990:intron 50.0%
ATACCTTCCAGGATCCCTCA+CGG + chr1_2:78410927-78410946 None:intergenic 50.0%
CAGTAACACTCGATAAGCCG+TGG - chr1_2:78411188-78411207 Msa0094990:intron 50.0%
TGGTACACTCCTTACGCTCG+CGG + chr1_2:78407893-78407912 None:intergenic 55.0%
TGCCGTGATAGCTCCAATGG+AGG - chr1_2:78408672-78408691 Msa0094990:intron 55.0%
! GCCCGAGTTGAGCAAAGAAG+TGG - chr1_2:78409474-78409493 Msa0094990:intron 55.0%
! CTAGGGAGCCGTTGATGAAG+TGG - chr1_2:78409638-78409657 Msa0094990:intron 55.0%
AGCGACACTTCCTCTTGTGG+AGG + chr1_2:78409685-78409704 None:intergenic 55.0%
AGGAGCGACACTTCCTCTTG+TGG + chr1_2:78409688-78409707 None:intergenic 55.0%
CAATTTCCCGTGAGGGATCC+TGG - chr1_2:78410917-78410936 Msa0094990:CDS 55.0%
TACCTTCCAGGATCCCTCAC+GGG + chr1_2:78410926-78410945 None:intergenic 55.0%
! ATGCTTTTGGGCCGTGCTGT+TGG - chr1_2:78411072-78411091 Msa0094990:intron 55.0%
CACTCGATAAGCCGTGGTTG+AGG - chr1_2:78411194-78411213 Msa0094990:intron 55.0%
CTGGAGGCCTATAGTCCACA+AGG - chr1_2:78411246-78411265 Msa0094990:intron 55.0%
CAAAGAACGCCGCGAGCGTA+AGG - chr1_2:78407881-78407900 Msa0094990:three_prime_UTR 60.0%
TTCCCGTGAGGGATCCTGGA+AGG - chr1_2:78410921-78410940 Msa0094990:CDS 60.0%
!! CTTTTGGGCCGTGCTGTTGG+TGG - chr1_2:78411075-78411094 Msa0094990:CDS 60.0%
CTCCTCCTCCACCAACAGCA+CGG + chr1_2:78411086-78411105 None:intergenic 60.0%
! TTGGGCCGTGCTGTTGGTGG+AGG - chr1_2:78411078-78411097 Msa0094990:CDS 65.0%
! GGCCGTGCTGTTGGTGGAGG+AGG - chr1_2:78411081-78411100 Msa0094990:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 78407849 78411536 78407849 ID=Msa0094990;Name=Msa0094990
chr1_2 mRNA 78407849 78411536 78407849 ID=Msa0094990-mRNA-1;Parent=Msa0094990;Name=Msa0094990-mRNA-1;_AED=0.31;_eAED=0.31;_QI=106|1|1|1|1|1|8|396|278
chr1_2 exon 78407849 78408359 78407849 ID=Msa0094990-mRNA-1:exon:28000;Parent=Msa0094990-mRNA-1
chr1_2 exon 78408443 78408498 78408443 ID=Msa0094990-mRNA-1:exon:27999;Parent=Msa0094990-mRNA-1
chr1_2 exon 78408736 78408822 78408736 ID=Msa0094990-mRNA-1:exon:27998;Parent=Msa0094990-mRNA-1
chr1_2 exon 78409254 78409334 78409254 ID=Msa0094990-mRNA-1:exon:27997;Parent=Msa0094990-mRNA-1
chr1_2 exon 78410645 78410740 78410645 ID=Msa0094990-mRNA-1:exon:27996;Parent=Msa0094990-mRNA-1
chr1_2 exon 78410841 78410975 78410841 ID=Msa0094990-mRNA-1:exon:27995;Parent=Msa0094990-mRNA-1
chr1_2 exon 78411073 78411186 78411073 ID=Msa0094990-mRNA-1:exon:27994;Parent=Msa0094990-mRNA-1
chr1_2 exon 78411278 78411536 78411278 ID=Msa0094990-mRNA-1:exon:27993;Parent=Msa0094990-mRNA-1
chr1_2 five_prime_UTR 78411431 78411536 78411431 ID=Msa0094990-mRNA-1:five_prime_utr;Parent=Msa0094990-mRNA-1
chr1_2 CDS 78411278 78411430 78411278 ID=Msa0094990-mRNA-1:cds;Parent=Msa0094990-mRNA-1
chr1_2 CDS 78411073 78411186 78411073 ID=Msa0094990-mRNA-1:cds;Parent=Msa0094990-mRNA-1
chr1_2 CDS 78410841 78410975 78410841 ID=Msa0094990-mRNA-1:cds;Parent=Msa0094990-mRNA-1
chr1_2 CDS 78410645 78410740 78410645 ID=Msa0094990-mRNA-1:cds;Parent=Msa0094990-mRNA-1
chr1_2 CDS 78409254 78409334 78409254 ID=Msa0094990-mRNA-1:cds;Parent=Msa0094990-mRNA-1
chr1_2 CDS 78408736 78408822 78408736 ID=Msa0094990-mRNA-1:cds;Parent=Msa0094990-mRNA-1
chr1_2 CDS 78408443 78408498 78408443 ID=Msa0094990-mRNA-1:cds;Parent=Msa0094990-mRNA-1
chr1_2 CDS 78408245 78408359 78408245 ID=Msa0094990-mRNA-1:cds;Parent=Msa0094990-mRNA-1
chr1_2 three_prime_UTR 78407849 78408244 78407849 ID=Msa0094990-mRNA-1:three_prime_utr;Parent=Msa0094990-mRNA-1
Gene Sequence

>Msa0094990

ATGGATTTGGCTCTCAATTTCAATTTTAGTTTCAGTTCATCACCACCACCACTATGCATTAATAATAGGAGAAGCCATACACTCTACAGTTACAATGTTAATAGAAGGAAATCAAAATCCATTTCCATGGCTATGCAATCTGCTGTTACCCAGGCATATGATTCTGAGCTAGAAAACAAGAAGCACGAGCTTTTAACATCTCTCCAAGACACACAAAGAGGACTCTTAACAACTCCTCTTCAACGTTCTTCTATTGAGGAAGCTCTTGTGAATGTGGAAGGAAGGAACATGGGTCACCCAATTGATTTTAACAAGTTGGATGGAACTTGGCGCTTGCAATATACTTCTGCTCCTGATGTTCTCATTCTCTTCCAAGCTGCTGCTAATCTTCCTTTCTTTCAAGTCGGACAAATATTTCAGAAATTTGAATGCCGTGATAGCTCCAATGGAGGTGTTATTCGCAATGTTGTCCGCTGGAGCATTCCTAATTTGTTTGAGGAACAAGAAGGTGCTACATTGGTTGTATCTGCCAAGTTCACTCTTGTATCGGTCCGAAATATTTACCTTCAGTTTCAAGAGATCTCAGTTCAAGATATAAATATTAGTGAACAACTGCAGGCTCTAATATCTCCAGCAATACTACCACGATCTTTTATAAGTTTGCAGATATTGCAATATCTCCGTGCTTTCAAAGCTCAATTTCCCGTGAGGGATCCTGGAAGGGAATCAGTAGGAGGATTATATTATCTGAGTTATTTGGATGATAATATGCTTTTGGGCCGTGCTGTTGGTGGAGGAGGAGTATTTGTGTTTACGAGAGCTCAATCACTTTACTGA

Protein sequence

>Msa0094990

MDLALNFNFSFSSSPPPLCINNRRSHTLYSYNVNRRKSKSISMAMQSAVTQAYDSELENKKHELLTSLQDTQRGLLTTPLQRSSIEEALVNVEGRNMGHPIDFNKLDGTWRLQYTSAPDVLILFQAAANLPFFQVGQIFQKFECRDSSNGGVIRNVVRWSIPNLFEEQEGATLVVSAKFTLVSVRNIYLQFQEISVQDINISEQLQALISPAILPRSFISLQILQYLRAFKAQFPVRDPGRESVGGLYYLSYLDDNMLLGRAVGGGGVFVFTRAQSLY*