Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340310 | XP_003606745.2 | 96.576 | 847 | 29 | 0 | 1 | 847 | 1 | 847 | 0.0 | 1713 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340310 | G7JCI1 | 96.576 | 847 | 29 | 0 | 1 | 847 | 1 | 847 | 0.0 | 1713 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094990 | Msa1340310 | 0.808684 | 2.743811e-50 | -8.615850e-47 |
| Msa0603870 | Msa1340310 | 0.829132 | 6.107617e-55 | -8.615850e-47 |
| Msa0645240 | Msa1340310 | 0.959051 | 5.109064e-117 | -8.615850e-47 |
| Msa0572820 | Msa1340310 | 0.813505 | 2.473806e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340310 | MtrunA17_Chr4g0032781 | 96.576 | 847 | 29 | 0 | 1 | 847 | 1 | 847 | 0.0 | 1713 |
| Msa1340310 | MtrunA17_Chr4g0032831 | 84.634 | 846 | 128 | 1 | 1 | 846 | 1 | 844 | 0.0 | 1503 |
| Msa1340310 | MtrunA17_Chr4g0032821 | 78.580 | 859 | 168 | 3 | 5 | 847 | 4 | 862 | 0.0 | 1410 |
| Msa1340310 | MtrunA17_Chr4g0032881 | 80.412 | 97 | 19 | 0 | 750 | 846 | 23 | 119 | 1.18e-48 | 167 |
| Msa1340310 | MtrunA17_Chr4g0032871 | 76.596 | 47 | 11 | 0 | 191 | 237 | 1 | 47 | 3.30e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340310 | AT5G12950.1 | 64.218 | 844 | 275 | 12 | 22 | 846 | 25 | 860 | 0.0 | 1094 |
| Msa1340310 | AT5G12960.1 | 61.182 | 863 | 308 | 11 | 3 | 847 | 12 | 865 | 0.0 | 1068 |
Find 222 sgRNAs with CRISPR-Local
Find 384 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATCCATTTGACACTTTC+TGG | 0.104833 | tig0004025:+8904 | Msa1340310:CDS |
| GGAAATCGGATCATTCTTTA+TGG | 0.145770 | tig0004025:+8247 | Msa1340310:intron |
| GTATAGGAAAATTAAGAATT+TGG | 0.186644 | tig0004025:+5739 | Msa1340310:CDS |
| CTGTTAACTTTACTCAATTA+AGG | 0.194807 | tig0004025:+5175 | Msa1340310:five_prime_UTR |
| GGCTTTGATGTCCCAATTTC+CGG | 0.200674 | tig0004025:-10025 | Msa1340310:intergenic |
| TCAAATTTAGGGTGGCAAAA+TGG | 0.208485 | tig0004025:+10829 | Msa1340310:three_prime_UTR |
| ACATATCAAGCTCATTTAAT+TGG | 0.209264 | tig0004025:+9174 | Msa1340310:CDS |
| ATATGCTTCCTTTAGGTATT+GGG | 0.214681 | tig0004025:+8850 | Msa1340310:CDS |
| ATCATTCCAGGAAGATTAAT+TGG | 0.217671 | tig0004025:-10273 | Msa1340310:intergenic |
| AGCTCATTTAATTGGAAATC+TGG | 0.222087 | tig0004025:+9182 | Msa1340310:CDS |
| TTAGTTGAGATATAAATTTC+TGG | 0.225631 | tig0004025:+5298 | Msa1340310:five_prime_UTR |
| AATCCTTAGTCCTTACATTT+TGG | 0.229792 | tig0004025:+5020 | Msa1340310:five_prime_UTR |
| TAAGTGCTCTAATCAAATTT+AGG | 0.236616 | tig0004025:+10817 | Msa1340310:three_prime_UTR |
| ATATCTCAACTAAATTAAAT+TGG | 0.240773 | tig0004025:-5288 | Msa1340310:intergenic |
| TAAACTTTAAGAGATTAATT+TGG | 0.240869 | tig0004025:-5232 | Msa1340310:intergenic |
| CCGGTCACACCACCGGAAAT+TGG | 0.260920 | tig0004025:+10013 | Msa1340310:CDS |
| TTGAAAATATTCAACCTGTT+TGG | 0.271856 | tig0004025:+6901 | Msa1340310:CDS |
| ACCTTTAGACTTATCCTAAA+AGG | 0.276916 | tig0004025:+10222 | Msa1340310:CDS |
| TGAAAATATTCAACCTGTTT+GGG | 0.277164 | tig0004025:+6902 | Msa1340310:CDS |
| CTCCCTTGGCGGGCCTTCTT+CGG | 0.282929 | tig0004025:+10341 | Msa1340310:CDS |
| TCATGTTCGGGAAAGGATTA+AGG | 0.284041 | tig0004025:+10526 | Msa1340310:CDS |
| GCTTGAACTGATGCATATTC+AGG | 0.284821 | tig0004025:-9964 | Msa1340310:intergenic |
| ACGTTATTTCTGCAGAAAAC+TGG | 0.288118 | tig0004025:+9418 | Msa1340310:intron |
| TAAGAGGTTGGTCTGGTTCT+TGG | 0.293356 | tig0004025:-10305 | Msa1340310:intergenic |
| TGTCCTCTGAGTTCGGTATT+AGG | 0.297824 | tig0004025:-5962 | Msa1340310:intergenic |
| TATATGCTTCCTTTAGGTAT+TGG | 0.298978 | tig0004025:+8849 | Msa1340310:CDS |
| ATGATTTATATGCTTCCTTT+AGG | 0.300957 | tig0004025:+8843 | Msa1340310:CDS |
| TTTGATTATTTGAACTTTGT+AGG | 0.305676 | tig0004025:-10724 | Msa1340310:intergenic |
| TCACAGGTGATCCACTTTAT+AGG | 0.306193 | tig0004025:+7935 | Msa1340310:CDS |
| CTAGAACCAATTAATCTTCC+TGG | 0.308600 | tig0004025:+10267 | Msa1340310:CDS |
| TACCTTGTGAATGGTGTAAT+AGG | 0.317036 | tig0004025:-6928 | Msa1340310:intergenic |
| TGTTTATTTCAACATTCTAT+TGG | 0.317181 | tig0004025:+10672 | Msa1340310:three_prime_UTR |
| AGGTTGTCGGCTATTCTCTT+TGG | 0.319281 | tig0004025:-8496 | Msa1340310:intergenic |
| ATAGGTTGATTTGGAGCTTC+AGG | 0.320627 | tig0004025:+5888 | Msa1340310:CDS |
| ATGATTGGGCTTTAATGTAT+AGG | 0.322038 | tig0004025:+5723 | Msa1340310:CDS |
| TAGAGCCATTATTTAACTTC+AGG | 0.327323 | tig0004025:+10601 | Msa1340310:CDS |
| ATGGCTCTAAAAGAAAATTC+TGG | 0.332053 | tig0004025:-10587 | Msa1340310:intergenic |
| TATAGGAAAATTAAGAATTT+GGG | 0.335217 | tig0004025:+5740 | Msa1340310:CDS |
| CTGTGACTTCATACCGCATT+TGG | 0.335761 | tig0004025:-7918 | Msa1340310:intergenic |
| AGCTAAAACTGGACATAGTT+GGG | 0.338057 | tig0004025:+8881 | Msa1340310:CDS |
| AACTAGGTTGCTATTGTAAC+TGG | 0.344167 | tig0004025:-10091 | Msa1340310:intergenic |
| AAGTGCTCTAATCAAATTTA+GGG | 0.348989 | tig0004025:+10818 | Msa1340310:three_prime_UTR |
| ATCAGAACAGAAGCCATAAA+AGG | 0.349305 | tig0004025:+9825 | Msa1340310:CDS |
| TACGGACCTTATCTTCTTGC+CGG | 0.352390 | tig0004025:+9994 | Msa1340310:CDS |
| ATTTGGGATCCAACAACAAT+TGG | 0.357335 | tig0004025:-7901 | Msa1340310:intergenic |
| CAAATTTAGGGTGGCAAAAT+GGG | 0.360343 | tig0004025:+10830 | Msa1340310:three_prime_UTR |
| ACAAGAAAACAAAGATGATT+TGG | 0.370442 | tig0004025:-5063 | Msa1340310:intergenic |
| ATCTGCATAAGTGACTTCTT+TGG | 0.370767 | tig0004025:-8757 | Msa1340310:intergenic |
| CAGGCTATCATTCTTTGTGC+TGG | 0.370963 | tig0004025:-6778 | Msa1340310:intergenic |
| CACAGGTGATCCACTTTATA+GGG | 0.372586 | tig0004025:+7936 | Msa1340310:CDS |
| TCATCCATTGAAAATATGAT+AGG | 0.374527 | tig0004025:-10955 | Msa1340310:intergenic |
| CTTGGGCAGCTTTGCTTCCA+AGG | 0.376140 | tig0004025:+5675 | Msa1340310:CDS |
| GGACATCAGTCCGTGAGTTC+TGG | 0.378116 | tig0004025:+8306 | Msa1340310:CDS |
| GGGTGGCAAAATGGGATGAT+TGG | 0.380485 | tig0004025:+10838 | Msa1340310:three_prime_UTR |
| CGACTCAGTCGCATACGTTT+CGG | 0.382727 | tig0004025:+5570 | Msa1340310:CDS |
| CTTCTTTGGTCCATCTGAAC+AGG | 0.382755 | tig0004025:-8743 | Msa1340310:intergenic |
| CAATCACTGAATGAGGAAAC+TGG | 0.384947 | tig0004025:+7163 | Msa1340310:CDS |
| GCGACATCAGTGCCAGGTTC+AGG | 0.388376 | tig0004025:-10189 | Msa1340310:intergenic |
| TGTGGCACAACAGACTAATT+TGG | 0.391090 | tig0004025:+5841 | Msa1340310:CDS |
| CGGTCACACCACCGGAAATT+GGG | 0.391542 | tig0004025:+10014 | Msa1340310:CDS |
| ACAGTTTATTTCAACATTCA+AGG | 0.392877 | tig0004025:+10636 | Msa1340310:CDS |
| CAGAAGAAAACCAACATGAT+TGG | 0.394758 | tig0004025:+5708 | Msa1340310:CDS |
| TGAACTTTCGTCTACCATCT+TGG | 0.395997 | tig0004025:+9455 | Msa1340310:CDS |
| ATTGTTGTAGATTCCTCCCT+TGG | 0.397510 | tig0004025:+10327 | Msa1340310:CDS |
| AAAATGTCGGCTCTTGTTGC+CGG | 0.398839 | tig0004025:+6807 | Msa1340310:CDS |
| TAGATGTTGATAGGTTGATT+TGG | 0.399133 | tig0004025:+5879 | Msa1340310:CDS |
| TGGTGACTTACAATCATTCC+AGG | 0.404014 | tig0004025:-10285 | Msa1340310:intergenic |
| TGCAACAGCTTTGCTAGAAC+CGG | 0.404572 | tig0004025:-10046 | Msa1340310:intergenic |
| TGAAATAAACAATATATGTA+AGG | 0.407027 | tig0004025:+10697 | Msa1340310:three_prime_UTR |
| TTTAGGATTGCTTGCCGTAC+AGG | 0.408367 | tig0004025:+7470 | Msa1340310:CDS |
| CTCTGTTGTTCCAAGGTTGT+CGG | 0.409031 | tig0004025:-8509 | Msa1340310:intergenic |
| TTTAATTCAAGTTTGTTCTC+TGG | 0.409074 | tig0004025:+5343 | Msa1340310:five_prime_UTR |
| TATAGAGAAGATATAATAGA+TGG | 0.410095 | tig0004025:-5150 | Msa1340310:intergenic |
| ACAGATCTTGGCCGGCCTGT+TGG | 0.410146 | tig0004025:+7024 | Msa1340310:intron |
| AACAAAATGTCCTCTGAGTT+CGG | 0.411412 | tig0004025:-5969 | Msa1340310:intergenic |
| CAAGCAGCAAGTTTCATGTT+CGG | 0.411463 | tig0004025:+10513 | Msa1340310:CDS |
| ACACATATCCCAATTGTTGT+TGG | 0.423041 | tig0004025:+7892 | Msa1340310:CDS |
| TTGTAGATTCCTCCCTTGGC+GGG | 0.425790 | tig0004025:+10331 | Msa1340310:CDS |
| AGCGATATGAGCTCTGGTTC+AGG | 0.427962 | tig0004025:+10447 | Msa1340310:CDS |
| CTTCAGTCTCTGTTGTTCCA+AGG | 0.428325 | tig0004025:-8516 | Msa1340310:intergenic |
| TCATCCCTGAAGTTAAATAA+TGG | 0.430175 | tig0004025:-10606 | Msa1340310:intergenic |
| TAGTTGAGATATAAATTTCT+GGG | 0.430452 | tig0004025:+5299 | Msa1340310:five_prime_UTR |
| TTCTGGTGCTGCTACGGAAC+CGG | 0.430538 | tig0004025:+8921 | Msa1340310:CDS |
| GATAATGATTTCAGGTTTCA+CGG | 0.431125 | tig0004025:+8718 | Msa1340310:intron |
| CCTTTAGCCACAAAACTGAT+AGG | 0.432441 | tig0004025:-10558 | Msa1340310:intergenic |
| AAGCAGCAAGTTTCATGTTC+GGG | 0.432551 | tig0004025:+10514 | Msa1340310:CDS |
| GCTCATTTAATTGGAAATCT+GGG | 0.434941 | tig0004025:+9183 | Msa1340310:CDS |
| TGTGACTTCATACCGCATTT+GGG | 0.435092 | tig0004025:-7917 | Msa1340310:intergenic |
| AAGCTAAAACTGGACATAGT+TGG | 0.435141 | tig0004025:+8880 | Msa1340310:CDS |
| GTGTAATAGGGAGCCCAAAC+AGG | 0.437125 | tig0004025:-6915 | Msa1340310:intergenic |
| ACTTTATCTTTGCCCGCTCC+AGG | 0.438187 | tig0004025:+9517 | Msa1340310:CDS |
| TTGGATCAATATACTGTAGC+TGG | 0.439839 | tig0004025:+7043 | Msa1340310:CDS |
| ACCTTGTGAATGGTGTAATA+GGG | 0.442206 | tig0004025:-6927 | Msa1340310:intergenic |
| AATTGAATCATTCTCAAAGC+TGG | 0.442887 | tig0004025:+9094 | Msa1340310:CDS |
| GGGGTTTCGAAAGCTAAAAC+TGG | 0.448832 | tig0004025:+8870 | Msa1340310:CDS |
| CTATTGTAACTGGATGGAAT+TGG | 0.451167 | tig0004025:-10081 | Msa1340310:intergenic |
| GTAAATGTCACTCGTAGGTA+AGG | 0.451881 | tig0004025:-9251 | Msa1340310:intergenic |
| CCAATTTCCGGTGGTGTGAC+CGG | 0.453525 | tig0004025:-10013 | Msa1340310:intergenic |
| GACACTTTCTGGTGCTGCTA+CGG | 0.454466 | tig0004025:+8915 | Msa1340310:CDS |
| AGATATAATAGATGGTAGAA+AGG | 0.459584 | tig0004025:-5142 | Msa1340310:intergenic |
| AAAAGCATGGCTTGTCGAAA+AGG | 0.460007 | tig0004025:-7449 | Msa1340310:intergenic |
| CATCCTCCATACGGTGTACC+AGG | 0.461140 | tig0004025:-5932 | Msa1340310:intergenic |
| AGAAGAAAACCAACATGATT+GGG | 0.463290 | tig0004025:+5709 | Msa1340310:CDS |
| TGATGATGTTAGATGTTGAT+AGG | 0.465990 | tig0004025:+5870 | Msa1340310:CDS |
| CGTTATTTCTGCAGAAAACT+GGG | 0.466638 | tig0004025:+9419 | Msa1340310:intron |
| GAGGAATCTACAACAATAAG+AGG | 0.468907 | tig0004025:-10321 | Msa1340310:intergenic |
| GATATAATAGATGGTAGAAA+GGG | 0.469159 | tig0004025:-5141 | Msa1340310:intergenic |
| CACCGACCGATGAATCTGCT+TGG | 0.469681 | tig0004025:+5657 | Msa1340310:CDS |
| TTCTTGACAAGCGGATAGAC+CGG | 0.475274 | tig0004025:-6826 | Msa1340310:intergenic |
| GTTGTAGATTCCTCCCTTGG+CGG | 0.481385 | tig0004025:+10330 | Msa1340310:CDS |
| TTTGGGATCCAACAACAATT+GGG | 0.482174 | tig0004025:-7900 | Msa1340310:intergenic |
| AAATAACTCACCCTATAAAG+TGG | 0.483711 | tig0004025:-7946 | Msa1340310:intergenic |
| AGAGCCATTATTTAACTTCA+GGG | 0.487469 | tig0004025:+10602 | Msa1340310:CDS |
| TCTTCTGATAAGATCTTCCT+TGG | 0.488745 | tig0004025:-5692 | Msa1340310:intergenic |
| GGATTCAAAGCATCTATTGT+TGG | 0.489543 | tig0004025:+7422 | Msa1340310:CDS |
| GCTTCTGTTCTGATGATAAG+AGG | 0.491841 | tig0004025:-9816 | Msa1340310:intergenic |
| AATTTGGAGGTTCTAATTGA+AGG | 0.492292 | tig0004025:-5216 | Msa1340310:intergenic |
| TATGCTTCCTTTAGGTATTG+GGG | 0.493468 | tig0004025:+8851 | Msa1340310:CDS |
| CGAACATGAAACTTGCTGCT+TGG | 0.494340 | tig0004025:-10512 | Msa1340310:intergenic |
| TCTTGAGGATGTGAGGCTGC+TGG | 0.496193 | tig0004025:+5802 | Msa1340310:CDS |
| ATTGATATTTGTTACCTGTA+CGG | 0.496674 | tig0004025:-7484 | Msa1340310:intergenic |
| ACTTTAAGAGATTAATTTGG+AGG | 0.498751 | tig0004025:-5229 | Msa1340310:intergenic |
| AGTTGTTCCAGCTGCTTCAT+CGG | 0.499026 | tig0004025:+9226 | Msa1340310:CDS |
| CTACAGTATATTGATCCAAC+AGG | 0.499586 | tig0004025:-7039 | Msa1340310:intergenic |
| TGAGATATAAATTTCTGGGC+TGG | 0.502981 | tig0004025:+5303 | Msa1340310:five_prime_UTR |
| TTCAGAATTCAATATCGCCT+TGG | 0.504238 | tig0004025:-9494 | Msa1340310:intergenic |
| CACAACTTATAATATGTTGA+AGG | 0.508895 | tig0004025:+8546 | Msa1340310:CDS |
| ACTGAGTACACCATTCGTTA+AGG | 0.509378 | tig0004025:-8793 | Msa1340310:intergenic |
| CAGCACCAGAAAGTGTCAAA+TGG | 0.510223 | tig0004025:-8909 | Msa1340310:intergenic |
| CTAGCAAAGCTGTTGCAGAC+TGG | 0.510603 | tig0004025:+10052 | Msa1340310:CDS |
| CAACTTTGACAGATCTTGGC+CGG | 0.513374 | tig0004025:+7016 | Msa1340310:intron |
| ACCGACCGATGAATCTGCTT+GGG | 0.516084 | tig0004025:+5658 | Msa1340310:CDS |
| TGACCAAAATGTAAGGACTA+AGG | 0.517921 | tig0004025:-5023 | Msa1340310:intergenic |
| GCAAGTTTCATGTTCGGGAA+AGG | 0.518251 | tig0004025:+10519 | Msa1340310:CDS |
| CTGGTACACCGTATGGAGGA+TGG | 0.521019 | tig0004025:+5933 | Msa1340310:CDS |
| AATCTACAACAATAAGAGGT+TGG | 0.521360 | tig0004025:-10317 | Msa1340310:intergenic |
| AAACCGAAGAAGGCCCGCCA+AGG | 0.521999 | tig0004025:-10344 | Msa1340310:intergenic |
| CTTGTGGTACCGGGTTTGGA+TGG | 0.523740 | tig0004025:+10369 | Msa1340310:CDS |
| ATTCAAAGAGGAACAGATCC+TGG | 0.523997 | tig0004025:+8816 | Msa1340310:CDS |
| TGATGATAAGAGGCAATTGA+AGG | 0.524062 | tig0004025:-9806 | Msa1340310:intergenic |
| TTTCACGGCACCTGTTCAGA+TGG | 0.524957 | tig0004025:+8733 | Msa1340310:CDS |
| TAAGGGTCCGATGAAGCAGC+TGG | 0.525370 | tig0004025:-9233 | Msa1340310:intergenic |
| CTGGTTCAGGAGTTAAGCTC+AGG | 0.527444 | tig0004025:+10460 | Msa1340310:CDS |
| ACAACAATAAGAGGTTGGTC+TGG | 0.530198 | tig0004025:-10312 | Msa1340310:intergenic |
| GACTCACGCTGATGGTGCCA+AGG | 0.531665 | tig0004025:+9477 | Msa1340310:CDS |
| ATCACGCGACAGTGGAGTGC+CGG | 0.532836 | tig0004025:+9771 | Msa1340310:CDS |
| GTGTGACCGGCAAGAAGATA+AGG | 0.534253 | tig0004025:-10000 | Msa1340310:intergenic |
| GTGTATAGCGATATGAGCTC+TGG | 0.536493 | tig0004025:+10441 | Msa1340310:CDS |
| CTTCTTGCCGGTCACACCAC+CGG | 0.538122 | tig0004025:+10006 | Msa1340310:CDS |
| ATTGAATCATTCTCAAAGCT+GGG | 0.541879 | tig0004025:+9095 | Msa1340310:CDS |
| ACTTCTTTCAGAAATCCTAC+AGG | 0.542555 | tig0004025:-5776 | Msa1340310:intergenic |
| AAGAGAATAGCCGACAACCT+TGG | 0.544736 | tig0004025:+8499 | Msa1340310:CDS |
| CCGACTCCTGGTACACCGTA+TGG | 0.545762 | tig0004025:+5926 | Msa1340310:CDS |
| AGATATGTGACCAAAATGTA+AGG | 0.547687 | tig0004025:-5030 | Msa1340310:intergenic |
| TGAGTGCATCAGCTCTAATG+TGG | 0.550383 | tig0004025:+6754 | Msa1340310:CDS |
| TGGTACACCGTATGGAGGAT+GGG | 0.551695 | tig0004025:+5934 | Msa1340310:CDS |
| ACATTAAAGCCCAATCATGT+TGG | 0.552104 | tig0004025:-5718 | Msa1340310:intergenic |
| GGTGTGTTTAAGCCACCTGT+AGG | 0.554706 | tig0004025:+5761 | Msa1340310:CDS |
| TTCGAAACCCCAATACCTAA+AGG | 0.555523 | tig0004025:-8858 | Msa1340310:intergenic |
| TGGAGCTTCAGGAAGACGGC+TGG | 0.556390 | tig0004025:+5899 | Msa1340310:CDS |
| GATTAATATCATCTCGTGAA+AGG | 0.556843 | tig0004025:-5001 | Msa1340310:intergenic |
| TCTGAAAGAAGTTCCTCTTG+AGG | 0.557134 | tig0004025:+5787 | Msa1340310:CDS |
| CCTCTGATGAAAGACGTGTC+TGG | 0.560973 | tig0004025:-4848 | Msa1340310:intergenic |
| TTGAAGGGTCAGCTTGTCAC+CGG | 0.561700 | tig0004025:-9790 | Msa1340310:intergenic |
| ACACTATCAATCACTGAATG+AGG | 0.561789 | tig0004025:+7156 | Msa1340310:CDS |
| GGTTCCTCCCATCCTCCATA+CGG | 0.561878 | tig0004025:-5941 | Msa1340310:intergenic |
| ACGGCTGGTTTACCGACTCC+TGG | 0.562227 | tig0004025:+5914 | Msa1340310:CDS |
| TGAAGAGCGACATCAGTGCC+AGG | 0.564631 | tig0004025:-10195 | Msa1340310:intergenic |
| CGAAGAAGGCCCGCCAAGGG+AGG | 0.565407 | tig0004025:-10340 | Msa1340310:intergenic |
| AGCTGCCCAAGCAGATTCAT+CGG | 0.572308 | tig0004025:-5663 | Msa1340310:intergenic |
| TACAGACTCAGACCTGGAGC+GGG | 0.576888 | tig0004025:-9529 | Msa1340310:intergenic |
| TCTTCTCACAGCTATGCGAC+TGG | 0.577040 | tig0004025:+8281 | Msa1340310:CDS |
| GAGGATGTGAGGCTGCTGGA+AGG | 0.582732 | tig0004025:+5806 | Msa1340310:CDS |
| TAGCCACAAAACTGATAGGA+TGG | 0.582916 | tig0004025:-10554 | Msa1340310:intergenic |
| TATGAGCGTGCCTTAACGAA+TGG | 0.583068 | tig0004025:+8783 | Msa1340310:CDS |
| GGAAATTGGGACATCAAAGC+CGG | 0.586825 | tig0004025:+10027 | Msa1340310:CDS |
| AGGTTGCTATTGTAACTGGA+TGG | 0.587968 | tig0004025:-10087 | Msa1340310:intergenic |
| GCCCAAGCAGATTCATCGGT+CGG | 0.593496 | tig0004025:-5659 | Msa1340310:intergenic |
| CCATCTTGGACTCACGCTGA+TGG | 0.593659 | tig0004025:+9469 | Msa1340310:CDS |
| GATTTGGAGCTTCAGGAAGA+CGG | 0.595474 | tig0004025:+5895 | Msa1340310:CDS |
| GAGTACCTCACTAGGTGAGA+AGG | 0.599416 | tig0004025:-9273 | Msa1340310:intergenic |
| TCAGTTCAAGCAATTCTCTA+CGG | 0.603741 | tig0004025:+9976 | Msa1340310:CDS |
| CCATCAGCGTGAGTCCAAGA+TGG | 0.605522 | tig0004025:-9469 | Msa1340310:intergenic |
| AGCAGCCTCACATCCTCAAG+AGG | 0.607268 | tig0004025:-5800 | Msa1340310:intergenic |
| GCTAAAACTGGACATAGTTG+GGG | 0.607890 | tig0004025:+8882 | Msa1340310:CDS |
| TTACAAATTATATAGTGTAA+CGG | 0.608043 | tig0004025:+7204 | Msa1340310:CDS |
| ATACAGACTCAGACCTGGAG+CGG | 0.609148 | tig0004025:-9530 | Msa1340310:intergenic |
| AAGTTCCTCTTGAGGATGTG+AGG | 0.609827 | tig0004025:+5795 | Msa1340310:CDS |
| TCTTTCAGAAATCCTACAGG+TGG | 0.610234 | tig0004025:-5773 | Msa1340310:intergenic |
| TCGATATAACATTCACCACT+CGG | 0.610358 | tig0004025:-7117 | Msa1340310:intergenic |
| TCTCACAGCTATGCGACTGG+AGG | 0.614490 | tig0004025:+8284 | Msa1340310:CDS |
| AGAAGGTAAATGTCACTCGT+AGG | 0.615292 | tig0004025:-9256 | Msa1340310:intergenic |
| AACCGAAGAAGGCCCGCCAA+GGG | 0.616024 | tig0004025:-10343 | Msa1340310:intergenic |
| GATGATAAGAGGCAATTGAA+GGG | 0.617420 | tig0004025:-9805 | Msa1340310:intergenic |
| AGCATATAAATCATCACACC+AGG | 0.618298 | tig0004025:-8834 | Msa1340310:intergenic |
| GGAAGGTTCGATTCACGCTG+TGG | 0.620546 | tig0004025:+5823 | Msa1340310:CDS |
| TAAATGTCACTCGTAGGTAA+GGG | 0.624192 | tig0004025:-9250 | Msa1340310:intergenic |
| TGCTCTAATCAAATTTAGGG+TGG | 0.625118 | tig0004025:+10821 | Msa1340310:three_prime_UTR |
| CATCTTAATACCAGAACTCA+CGG | 0.626122 | tig0004025:-8316 | Msa1340310:intergenic |
| ATTTACCTTCTCACCTAGTG+AGG | 0.630654 | tig0004025:+9268 | Msa1340310:CDS |
| AATGCAATGAGTACCTCACT+AGG | 0.632196 | tig0004025:-9281 | Msa1340310:intergenic |
| CACAAAGAATGATAGCCTGA+AGG | 0.636801 | tig0004025:+6782 | Msa1340310:CDS |
| CCAGACACGTCTTTCATCAG+AGG | 0.639396 | tig0004025:+4848 | Msa1340310:five_prime_UTR |
| AGTATATTGATCCAACAGGC+CGG | 0.642469 | tig0004025:-7035 | Msa1340310:intergenic |
| TTTGATGTCCCAATTTCCGG+TGG | 0.643405 | tig0004025:-10022 | Msa1340310:intergenic |
| CAAATGCGGTATGAAGTCAC+AGG | 0.645340 | tig0004025:+7919 | Msa1340310:CDS |
| GAGTGCATCAGCTCTAATGT+GGG | 0.646670 | tig0004025:+6755 | Msa1340310:CDS |
| CTCACAGCTATGCGACTGGA+GGG | 0.653289 | tig0004025:+8285 | Msa1340310:CDS |
| TTGCATCAAAGAATGAGACA+TGG | 0.656551 | tig0004025:+5603 | Msa1340310:CDS |
| CCATACGGTGTACCAGGAGT+CGG | 0.658192 | tig0004025:-5926 | Msa1340310:intergenic |
| TTGTTGTTGGATCCCAAATG+CGG | 0.660110 | tig0004025:+7905 | Msa1340310:CDS |
| CGAAACGTATGCGACTGAGT+CGG | 0.661456 | tig0004025:-5569 | Msa1340310:intergenic |
| TACTGAATGATGTATAGACT+AGG | 0.668553 | tig0004025:-9152 | Msa1340310:intergenic |
| ACTCCTGGTACACCGTATGG+AGG | 0.671069 | tig0004025:+5929 | Msa1340310:CDS |
| GAACTGATGCATATTCAGGT+CGG | 0.673754 | tig0004025:-9960 | Msa1340310:intergenic |
| TAGCCTGAAGGAGAAAATGT+CGG | 0.674437 | tig0004025:+6794 | Msa1340310:CDS |
| GGTGTACTCAGTATTCAAAG+AGG | 0.683770 | tig0004025:+8804 | Msa1340310:CDS |
| TCCCTATTACACCATTCACA+AGG | 0.687838 | tig0004025:+6926 | Msa1340310:CDS |
| TTTATAGCACTTATGCTGCG+TGG | 0.697020 | tig0004025:+5515 | Msa1340310:CDS |
| GAACCTAATACCGAACTCAG+AGG | 0.704808 | tig0004025:+5959 | Msa1340310:CDS |
| TACACCGTATGGAGGATGGG+AGG | 0.724621 | tig0004025:+5937 | Msa1340310:CDS |
| TCACTGAATGAGGAAACTGG+AGG | 0.742577 | tig0004025:+7166 | Msa1340310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATAAAAAAAAAAAAAAA+AGG | + | tig0004025:10754-10773 | Msa1340310:three_prime_UTR | 0.0% |
| !!! | GAAAATTTCAAAAATAATTT+TGG | - | tig0004025:7829-7848 | Msa1340310:intergenic | 10.0% |
| !!! | ATATTTTTTTTCTTCTTAAA+AGG | + | tig0004025:8379-8398 | Msa1340310:intron | 10.0% |
| !!! | TAAACTTTAAGAGATTAATT+TGG | - | tig0004025:5235-5254 | Msa1340310:intergenic | 15.0% |
| !! | ATATCTCAACTAAATTAAAT+TGG | - | tig0004025:5291-5310 | Msa1340310:intergenic | 15.0% |
| !! | TATAGGAAAATTAAGAATTT+GGG | + | tig0004025:5740-5759 | Msa1340310:CDS | 15.0% |
| !!! | TTAAAAGTGTTGTAAATAAA+AGG | - | tig0004025:6272-6291 | Msa1340310:intergenic | 15.0% |
| !! | TTACAAATTATATAGTGTAA+CGG | + | tig0004025:7204-7223 | Msa1340310:CDS | 15.0% |
| !! | TTTATAAAATCTATCAACTA+TGG | - | tig0004025:7310-7329 | Msa1340310:intergenic | 15.0% |
| !! | GCTATTATAATTTATAAATG+CGG | - | tig0004025:7610-7629 | Msa1340310:intergenic | 15.0% |
| !! | AAGAACAAATATTAGAAAAT+TGG | - | tig0004025:8211-8230 | Msa1340310:intergenic | 15.0% |
| !! | GTATAAATTTATAATCTCAA+AGG | - | tig0004025:9357-9376 | Msa1340310:intergenic | 15.0% |
| !! | TGAAATAAACAATATATGTA+AGG | + | tig0004025:10697-10716 | Msa1340310:three_prime_UTR | 15.0% |
| !! | TATAGAGAAGATATAATAGA+TGG | - | tig0004025:5153-5172 | Msa1340310:intergenic | 20.0% |
| !! | TTAGTTGAGATATAAATTTC+TGG | + | tig0004025:5298-5317 | Msa1340310:five_prime_UTR | 20.0% |
| !! | TAGTTGAGATATAAATTTCT+GGG | + | tig0004025:5299-5318 | Msa1340310:five_prime_UTR | 20.0% |
| !!! | ATCTATGCTGTTTTATTTTT+TGG | + | tig0004025:5379-5398 | Msa1340310:intron | 20.0% |
| !! | GTATAGGAAAATTAAGAATT+TGG | + | tig0004025:5739-5758 | Msa1340310:CDS | 20.0% |
| !!! | AATGTTCTTTATTTGTATCA+AGG | + | tig0004025:6022-6041 | Msa1340310:intron | 20.0% |
| !!! | TTTAGTTTTCTTAGTTGAAA+GGG | + | tig0004025:6047-6066 | Msa1340310:intron | 20.0% |
| !! | CACATTGTCAAAAATAAAAA+AGG | - | tig0004025:6722-6741 | Msa1340310:intergenic | 20.0% |
| !!! | TTTTATTTTTGACAATGTGA+AGG | + | tig0004025:6723-6742 | Msa1340310:intron | 20.0% |
| !!! | TTTATTTTTGACAATGTGAA+GGG | + | tig0004025:6724-6743 | Msa1340310:intron | 20.0% |
| !! | ATCAAAATCACACAATAATA+AGG | - | tig0004025:6992-7011 | Msa1340310:intergenic | 20.0% |
| !!! | AGAGGAAACTTATTTTATAA+AGG | - | tig0004025:7757-7776 | Msa1340310:intergenic | 20.0% |
| !! | ACTAAATAATATTCAAGTAG+AGG | - | tig0004025:7775-7794 | Msa1340310:intergenic | 20.0% |
| !!! | GAAATTTTCTTTTTTCATGT+AGG | + | tig0004025:7840-7859 | Msa1340310:intron | 20.0% |
| !!! | AAAGTTTACTTGCTATTTAT+TGG | + | tig0004025:8018-8037 | Msa1340310:intron | 20.0% |
| !! | AATGTCTGTAAGAATTAATA+GGG | - | tig0004025:8112-8131 | Msa1340310:intergenic | 20.0% |
| !! | AGTTATAATTGTTTGTCATT+CGG | - | tig0004025:8170-8189 | Msa1340310:intergenic | 20.0% |
| !!! | TAATATTTGTTCTTGTGTTT+TGG | + | tig0004025:8217-8236 | Msa1340310:intron | 20.0% |
| !! | AAGAAGAAAAAAAATATCCA+TGG | - | tig0004025:8376-8395 | Msa1340310:intergenic | 20.0% |
| !!! | TTGCTTTATTTTTAGATACT+CGG | + | tig0004025:8422-8441 | Msa1340310:intron | 20.0% |
| !!! | ATATTTGTGTATTTTATAGC+AGG | + | tig0004025:9683-9702 | Msa1340310:intron | 20.0% |
| !! | TGTTTATTTCAACATTCTAT+TGG | + | tig0004025:10672-10691 | Msa1340310:three_prime_UTR | 20.0% |
| !! | TTTGATTATTTGAACTTTGT+AGG | - | tig0004025:10727-10746 | Msa1340310:intergenic | 20.0% |
| !!! | AAATCCTATCATATTTTCAA+TGG | + | tig0004025:10951-10970 | Msa1340310:three_prime_UTR | 20.0% |
| ! | ACAAGAAAACAAAGATGATT+TGG | - | tig0004025:5066-5085 | Msa1340310:intergenic | 25.0% |
| ! | GATATAATAGATGGTAGAAA+GGG | - | tig0004025:5144-5163 | Msa1340310:intergenic | 25.0% |
| ! | AGATATAATAGATGGTAGAA+AGG | - | tig0004025:5145-5164 | Msa1340310:intergenic | 25.0% |
| ! | CTGTTAACTTTACTCAATTA+AGG | + | tig0004025:5175-5194 | Msa1340310:five_prime_UTR | 25.0% |
| !! | ACTTTAAGAGATTAATTTGG+AGG | - | tig0004025:5232-5251 | Msa1340310:intergenic | 25.0% |
| !! | TTTAATTCAAGTTTGTTCTC+TGG | + | tig0004025:5343-5362 | Msa1340310:five_prime_UTR | 25.0% |
| ! | GCTTAATGACTTATAGATTA+AGG | + | tig0004025:5412-5431 | Msa1340310:intron | 25.0% |
| !! | TGAAATTTTCAGAAAGATGA+AGG | + | tig0004025:5472-5491 | Msa1340310:intron | 25.0% |
| !!! | CTTTAGTTTTCTTAGTTGAA+AGG | + | tig0004025:6046-6065 | Msa1340310:intron | 25.0% |
| ! | CTAATTACTACACATAAAAG+TGG | - | tig0004025:6335-6354 | Msa1340310:intergenic | 25.0% |
| ! | AGGTAGCAAAACATAAAAAA+TGG | - | tig0004025:6422-6441 | Msa1340310:intergenic | 25.0% |
| !! | AACTTTACTTAGTTTGAAGT+TGG | + | tig0004025:6552-6571 | Msa1340310:intron | 25.0% |
| ! | AGAGATATTTCAGAAGTTAT+GGG | - | tig0004025:6578-6597 | Msa1340310:intergenic | 25.0% |
| ! | TTGAAAATATTCAACCTGTT+TGG | + | tig0004025:6901-6920 | Msa1340310:CDS | 25.0% |
| ! | TGAAAATATTCAACCTGTTT+GGG | + | tig0004025:6902-6921 | Msa1340310:CDS | 25.0% |
| !!! | GCATAATCAAAATCTAGTTT+TGG | - | tig0004025:6957-6976 | Msa1340310:intergenic | 25.0% |
| ! | AAATTATATAGTGTAACGGT+AGG | + | tig0004025:7208-7227 | Msa1340310:intron | 25.0% |
| ! | TGTAAATTACAGCAATAACT+AGG | - | tig0004025:7363-7382 | Msa1340310:intergenic | 25.0% |
| ! | ATCCTAAAGTAAATCTTTCA+TGG | + | tig0004025:7383-7402 | Msa1340310:intron | 25.0% |
| ! | TACCATGAAAGATTTACTTT+AGG | - | tig0004025:7388-7407 | Msa1340310:intergenic | 25.0% |
| !! | ATTGATATTTGTTACCTGTA+CGG | - | tig0004025:7487-7506 | Msa1340310:intergenic | 25.0% |
| ! | TAATTCAATGTAATCCACAT+TGG | + | tig0004025:7523-7542 | Msa1340310:intron | 25.0% |
| !!! | GGAAACTTATTTTATAAAGG+AGG | - | tig0004025:7754-7773 | Msa1340310:intergenic | 25.0% |
| ! | ATTGTATTTGATGTTATGAC+TGG | + | tig0004025:7801-7820 | Msa1340310:intron | 25.0% |
| !!! | GTTTTAATCGTAATGTTTAG+TGG | + | tig0004025:8054-8073 | Msa1340310:intron | 25.0% |
| ! | ATGTCTGTAAGAATTAATAG+GGG | - | tig0004025:8111-8130 | Msa1340310:intergenic | 25.0% |
| ! | GAATGTCTGTAAGAATTAAT+AGG | - | tig0004025:8113-8132 | Msa1340310:intergenic | 25.0% |
| ! | AAATTGGAAATCATAGCATA+TGG | - | tig0004025:8195-8214 | Msa1340310:intergenic | 25.0% |
| ! | CACAACTTATAATATGTTGA+AGG | + | tig0004025:8546-8565 | Msa1340310:CDS | 25.0% |
| ! | ATGATTTATATGCTTCCTTT+AGG | + | tig0004025:8843-8862 | Msa1340310:CDS | 25.0% |
| !! | ACTCGATGATTTTATTCAAT+AGG | - | tig0004025:9017-9036 | Msa1340310:intergenic | 25.0% |
| !!! | AGATTCTATCTATTTTGAAG+AGG | + | tig0004025:9118-9137 | Msa1340310:CDS | 25.0% |
| ! | ACATATCAAGCTCATTTAAT+TGG | + | tig0004025:9174-9193 | Msa1340310:CDS | 25.0% |
| ! | TATCTTCTAATGATAGGTAT+TGG | + | tig0004025:9330-9349 | Msa1340310:intron | 25.0% |
| ! | TTGCAGAAGAAAAATATAGA+GGG | - | tig0004025:9382-9401 | Msa1340310:intergenic | 25.0% |
| !! | ATTTTTGCATTGTAAGTGAT+TGG | - | tig0004025:10167-10186 | Msa1340310:intergenic | 25.0% |
| ! | ACAGTTTATTTCAACATTCA+AGG | + | tig0004025:10636-10655 | Msa1340310:CDS | 25.0% |
| ! | TAAGTGCTCTAATCAAATTT+AGG | + | tig0004025:10817-10836 | Msa1340310:three_prime_UTR | 25.0% |
| ! | AAGTGCTCTAATCAAATTTA+GGG | + | tig0004025:10818-10837 | Msa1340310:three_prime_UTR | 25.0% |
| !!! | GATTTGAGTTTTGATTGTAA+TGG | + | tig0004025:10864-10883 | Msa1340310:three_prime_UTR | 25.0% |
| !! | TGTAAGTGAATTGTTTTCAT+TGG | - | tig0004025:10891-10910 | Msa1340310:intergenic | 25.0% |
| ! | TCATCCATTGAAAATATGAT+AGG | - | tig0004025:10958-10977 | Msa1340310:intergenic | 25.0% |
| GATTAATATCATCTCGTGAA+AGG | - | tig0004025:5004-5023 | Msa1340310:intergenic | 30.0% | |
| ! | AATCCTTAGTCCTTACATTT+TGG | + | tig0004025:5020-5039 | Msa1340310:five_prime_UTR | 30.0% |
| AGATATGTGACCAAAATGTA+AGG | - | tig0004025:5033-5052 | Msa1340310:intergenic | 30.0% | |
| ! | AATTTGGAGGTTCTAATTGA+AGG | - | tig0004025:5219-5238 | Msa1340310:intergenic | 30.0% |
| AGAAGAAAACCAACATGATT+GGG | + | tig0004025:5709-5728 | Msa1340310:CDS | 30.0% | |
| ! | ATGATTGGGCTTTAATGTAT+AGG | + | tig0004025:5723-5742 | Msa1340310:CDS | 30.0% |
| ! | TGATGATGTTAGATGTTGAT+AGG | + | tig0004025:5870-5889 | Msa1340310:CDS | 30.0% |
| !! | TAGATGTTGATAGGTTGATT+TGG | + | tig0004025:5879-5898 | Msa1340310:CDS | 30.0% |
| AAAGAATCGCAGTAAAATAC+AGG | + | tig0004025:6172-6191 | Msa1340310:intron | 30.0% | |
| ATACAACACAACAATGATTG+AGG | - | tig0004025:6198-6217 | Msa1340310:intergenic | 30.0% | |
| GAGAGATATTTCAGAAGTTA+TGG | - | tig0004025:6579-6598 | Msa1340310:intergenic | 30.0% | |
| !!! | TCCAATTTTTTCTTGACAAG+CGG | - | tig0004025:6838-6857 | Msa1340310:intergenic | 30.0% |
| TGTCAAGAAAAAATTGGAAC+AGG | + | tig0004025:6840-6859 | Msa1340310:CDS | 30.0% | |
| TCAAATCGATCAAAAAACTC+TGG | - | tig0004025:6885-6904 | Msa1340310:intergenic | 30.0% | |
| !! | TTTTGGTTATACCTTGTGAA+TGG | - | tig0004025:6940-6959 | Msa1340310:intergenic | 30.0% |
| ! | TTTGATTATGCATGTGCTTT+TGG | + | tig0004025:6966-6985 | Msa1340310:intron | 30.0% |
| TATTCAACTTTGACAGATCT+TGG | + | tig0004025:7012-7031 | Msa1340310:intron | 30.0% | |
| CAATGATGTTCTTTACTTGT+TGG | + | tig0004025:7244-7263 | Msa1340310:intron | 30.0% | |
| CATTCAAAGCTAGCATAATA+TGG | + | tig0004025:7335-7354 | Msa1340310:intron | 30.0% | |
| TTTCATGGTATACTATATGC+AGG | + | tig0004025:7398-7417 | Msa1340310:intron | 30.0% | |
| TTCATGGTATACTATATGCA+GGG | + | tig0004025:7399-7418 | Msa1340310:intron | 30.0% | |
| CATAAAGTTGAAGCAGAAAT+TGG | - | tig0004025:7687-7706 | Msa1340310:intergenic | 30.0% | |
| AAATAACTCACCCTATAAAG+TGG | - | tig0004025:7949-7968 | Msa1340310:intergenic | 30.0% | |
| ATGTTTAGTGGTATCATTTG+AGG | + | tig0004025:8066-8085 | Msa1340310:intron | 30.0% | |
| TGTCTGTAAGAATTAATAGG+GGG | - | tig0004025:8110-8129 | Msa1340310:intergenic | 30.0% | |
| TGCACAAAAATTGAAGTGAA+GGG | - | tig0004025:8468-8487 | Msa1340310:intergenic | 30.0% | |
| CTAATCGAATTAAGAGTGAT+TGG | - | tig0004025:8577-8596 | Msa1340310:intergenic | 30.0% | |
| !! | TACACATTTTTAACTCTCCT+AGG | - | tig0004025:8613-8632 | Msa1340310:intergenic | 30.0% |
| ! | CTAAGAATCATAACTGACTT+AGG | - | tig0004025:8668-8687 | Msa1340310:intergenic | 30.0% |
| TGTTGCAAGATAATGATTTC+AGG | + | tig0004025:8710-8729 | Msa1340310:intron | 30.0% | |
| !! | GATAATGATTTCAGGTTTCA+CGG | + | tig0004025:8718-8737 | Msa1340310:intron | 30.0% |
| TATATGCTTCCTTTAGGTAT+TGG | + | tig0004025:8849-8868 | Msa1340310:CDS | 30.0% | |
| ATATGCTTCCTTTAGGTATT+GGG | + | tig0004025:8850-8869 | Msa1340310:CDS | 30.0% | |
| AACCTAAAACAAATACCTAC+CGG | - | tig0004025:8943-8962 | Msa1340310:intergenic | 30.0% | |
| TAGGTGTACATAATCTTGAA+AGG | - | tig0004025:8998-9017 | Msa1340310:intergenic | 30.0% | |
| AATTGAATCATTCTCAAAGC+TGG | + | tig0004025:9094-9113 | Msa1340310:CDS | 30.0% | |
| ATTGAATCATTCTCAAAGCT+GGG | + | tig0004025:9095-9114 | Msa1340310:CDS | 30.0% | |
| !! | TCTATCTATTTTGAAGAGGA+AGG | + | tig0004025:9122-9141 | Msa1340310:CDS | 30.0% |
| !! | CTATCTATTTTGAAGAGGAA+GGG | + | tig0004025:9123-9142 | Msa1340310:CDS | 30.0% |
| TACTGAATGATGTATAGACT+AGG | - | tig0004025:9155-9174 | Msa1340310:intergenic | 30.0% | |
| AGCTCATTTAATTGGAAATC+TGG | + | tig0004025:9182-9201 | Msa1340310:CDS | 30.0% | |
| GCTCATTTAATTGGAAATCT+GGG | + | tig0004025:9183-9202 | Msa1340310:CDS | 30.0% | |
| ! | GTACTCATTGCATTTTCTTT+TGG | + | tig0004025:9290-9309 | Msa1340310:intron | 30.0% |
| ACCACATATCTTCTAATGAT+AGG | + | tig0004025:9324-9343 | Msa1340310:intron | 30.0% | |
| ACCTATCATTAGAAGATATG+TGG | - | tig0004025:9328-9347 | Msa1340310:intergenic | 30.0% | |
| GTTGCAGAAGAAAAATATAG+AGG | - | tig0004025:9383-9402 | Msa1340310:intergenic | 30.0% | |
| TGCAGAAATAACGTTTAGAA+AGG | - | tig0004025:9412-9431 | Msa1340310:intergenic | 30.0% | |
| TAATCGCCTAAAAACTAAGA+CGG | + | tig0004025:9590-9609 | Msa1340310:intron | 30.0% | |
| !! | TCTTTTCCGTCTTAGTTTTT+AGG | - | tig0004025:9599-9618 | Msa1340310:intergenic | 30.0% |
| ! | TTAGTCCATTCCTTTAAGTT+AGG | + | tig0004025:9627-9646 | Msa1340310:intron | 30.0% |
| TTTGTCCTAACTTAAAGGAA+TGG | - | tig0004025:9635-9654 | Msa1340310:intergenic | 30.0% | |
| !! | GTGTTTTTGTCCTAACTTAA+AGG | - | tig0004025:9640-9659 | Msa1340310:intergenic | 30.0% |
| TATTTACTGTCTTGATCTCT+AGG | + | tig0004025:9735-9754 | Msa1340310:intron | 30.0% | |
| ATTTACTGTCTTGATCTCTA+GGG | + | tig0004025:9736-9755 | Msa1340310:intron | 30.0% | |
| ! | AGTCTTGTGAAAAAGAAACT+AGG | - | tig0004025:10110-10129 | Msa1340310:intergenic | 30.0% |
| ACCTTTAGACTTATCCTAAA+AGG | + | tig0004025:10222-10241 | Msa1340310:CDS | 30.0% | |
| !!! | ACCTTTTAGGATAAGTCTAA+AGG | - | tig0004025:10226-10245 | Msa1340310:intergenic | 30.0% |
| ATCATTCCAGGAAGATTAAT+TGG | - | tig0004025:10276-10295 | Msa1340310:intergenic | 30.0% | |
| AATCTACAACAATAAGAGGT+TGG | - | tig0004025:10320-10339 | Msa1340310:intergenic | 30.0% | |
| !! | ATGGCTCTAAAAGAAAATTC+TGG | - | tig0004025:10590-10609 | Msa1340310:intergenic | 30.0% |
| ! | TAGAGCCATTATTTAACTTC+AGG | + | tig0004025:10601-10620 | Msa1340310:CDS | 30.0% |
| ! | AGAGCCATTATTTAACTTCA+GGG | + | tig0004025:10602-10621 | Msa1340310:CDS | 30.0% |
| TCATCCCTGAAGTTAAATAA+TGG | - | tig0004025:10609-10628 | Msa1340310:intergenic | 30.0% | |
| GAACAAAAAAACAAGTCCAC+CGG | + | tig0004025:4919-4938 | Msa1340310:five_prime_UTR | 35.0% | |
| ! | CTTTTGATGAAAAACGTGTC+CGG | - | tig0004025:4941-4960 | Msa1340310:intergenic | 35.0% |
| TGACCAAAATGTAAGGACTA+AGG | - | tig0004025:5026-5045 | Msa1340310:intergenic | 35.0% | |
| ! | TGAGATATAAATTTCTGGGC+TGG | + | tig0004025:5303-5322 | Msa1340310:five_prime_UTR | 35.0% |
| TTGCATCAAAGAATGAGACA+TGG | + | tig0004025:5603-5622 | Msa1340310:CDS | 35.0% | |
| TCTTCTGATAAGATCTTCCT+TGG | - | tig0004025:5695-5714 | Msa1340310:intergenic | 35.0% | |
| CAGAAGAAAACCAACATGAT+TGG | + | tig0004025:5708-5727 | Msa1340310:CDS | 35.0% | |
| ACATTAAAGCCCAATCATGT+TGG | - | tig0004025:5721-5740 | Msa1340310:intergenic | 35.0% | |
| ACTTCTTTCAGAAATCCTAC+AGG | - | tig0004025:5779-5798 | Msa1340310:intergenic | 35.0% | |
| AACAAAATGTCCTCTGAGTT+CGG | - | tig0004025:5972-5991 | Msa1340310:intergenic | 35.0% | |
| ! | AACCAATGTTCTCAAGCTTT+TGG | + | tig0004025:6460-6479 | Msa1340310:intron | 35.0% |
| TTCCAAAAGCTTGAGAACAT+TGG | - | tig0004025:6465-6484 | Msa1340310:intergenic | 35.0% | |
| TCCGCTTGTCAAGAAAAAAT+TGG | + | tig0004025:6834-6853 | Msa1340310:CDS | 35.0% | |
| AATCGATCAAAAAACTCTGG+CGG | - | tig0004025:6882-6901 | Msa1340310:intergenic | 35.0% | |
| ACCTTGTGAATGGTGTAATA+GGG | - | tig0004025:6930-6949 | Msa1340310:intergenic | 35.0% | |
| TACCTTGTGAATGGTGTAAT+AGG | - | tig0004025:6931-6950 | Msa1340310:intergenic | 35.0% | |
| CTACAGTATATTGATCCAAC+AGG | - | tig0004025:7042-7061 | Msa1340310:intergenic | 35.0% | |
| TTGGATCAATATACTGTAGC+TGG | + | tig0004025:7043-7062 | Msa1340310:CDS | 35.0% | |
| !! | AAACCCTCAAGCTCTAAAAA+TGG | + | tig0004025:7066-7085 | Msa1340310:CDS | 35.0% |
| !!! | TCACCATTTTTAGAGCTTGA+GGG | - | tig0004025:7072-7091 | Msa1340310:intergenic | 35.0% |
| !! | AAGCTCTAAAAATGGTGACA+TGG | + | tig0004025:7074-7093 | Msa1340310:CDS | 35.0% |
| TCTAAAAATGGTGACATGGA+TGG | + | tig0004025:7078-7097 | Msa1340310:CDS | 35.0% | |
| TCGATATAACATTCACCACT+CGG | - | tig0004025:7120-7139 | Msa1340310:intergenic | 35.0% | |
| ACACTATCAATCACTGAATG+AGG | + | tig0004025:7156-7175 | Msa1340310:CDS | 35.0% | |
| TCATGGTATACTATATGCAG+GGG | + | tig0004025:7400-7419 | Msa1340310:intron | 35.0% | |
| ! | GGATTCAAAGCATCTATTGT+TGG | + | tig0004025:7422-7441 | Msa1340310:CDS | 35.0% |
| GAAAACAGTTTAAGCCAATG+TGG | - | tig0004025:7540-7559 | Msa1340310:intergenic | 35.0% | |
| ! | TTTTCGCTGTCAATTTCAAG+AGG | + | tig0004025:7555-7574 | Msa1340310:intron | 35.0% |
| GACAAGCATATCATGTAAAG+AGG | + | tig0004025:7706-7725 | Msa1340310:intron | 35.0% | |
| ACACATATCCCAATTGTTGT+TGG | + | tig0004025:7892-7911 | Msa1340310:CDS | 35.0% | |
| ! | TTTGGGATCCAACAACAATT+GGG | - | tig0004025:7903-7922 | Msa1340310:intergenic | 35.0% |
| ! | ATTTGGGATCCAACAACAAT+TGG | - | tig0004025:7904-7923 | Msa1340310:intergenic | 35.0% |
| !!! | TTCTTGTGTTTTGGTGTGTT+AGG | + | tig0004025:8226-8245 | Msa1340310:intron | 35.0% |
| !! | GTTTTGGTGTGTTAGGAAAT+CGG | + | tig0004025:8233-8252 | Msa1340310:intron | 35.0% |
| GGAAATCGGATCATTCTTTA+TGG | + | tig0004025:8247-8266 | Msa1340310:intron | 35.0% | |
| CATCTTAATACCAGAACTCA+CGG | - | tig0004025:8319-8338 | Msa1340310:intergenic | 35.0% | |
| AGTTTACATTCAAGCATCCA+TGG | + | tig0004025:8356-8375 | Msa1340310:intron | 35.0% | |
| CTGCACAAAAATTGAAGTGA+AGG | - | tig0004025:8469-8488 | Msa1340310:intergenic | 35.0% | |
| ! | CTTCACTTCAATTTTTGTGC+AGG | + | tig0004025:8467-8486 | Msa1340310:intron | 35.0% |
| TTAGTTCGTCATGTAATCCT+AGG | + | tig0004025:8593-8612 | Msa1340310:intron | 35.0% | |
| ATCTGCATAAGTGACTTCTT+TGG | - | tig0004025:8760-8779 | Msa1340310:intergenic | 35.0% | |
| AGCATATAAATCATCACACC+AGG | - | tig0004025:8837-8856 | Msa1340310:intergenic | 35.0% | |
| ! | TATGCTTCCTTTAGGTATTG+GGG | + | tig0004025:8851-8870 | Msa1340310:CDS | 35.0% |
| AAGCTAAAACTGGACATAGT+TGG | + | tig0004025:8880-8899 | Msa1340310:CDS | 35.0% | |
| AGCTAAAACTGGACATAGTT+GGG | + | tig0004025:8881-8900 | Msa1340310:CDS | 35.0% | |
| GAAATCCATTTGACACTTTC+TGG | + | tig0004025:8904-8923 | Msa1340310:CDS | 35.0% | |
| !! | AACCGGTAGGTATTTGTTTT+AGG | + | tig0004025:8938-8957 | Msa1340310:intron | 35.0% |
| CTGCAAACTACTTTGTCATT+AGG | + | tig0004025:9071-9090 | Msa1340310:intron | 35.0% | |
| TAAATGTCACTCGTAGGTAA+GGG | - | tig0004025:9253-9272 | Msa1340310:intergenic | 35.0% | |
| !! | ACGTTATTTCTGCAGAAAAC+TGG | + | tig0004025:9418-9437 | Msa1340310:intron | 35.0% |
| !! | CGTTATTTCTGCAGAAAACT+GGG | + | tig0004025:9419-9438 | Msa1340310:intron | 35.0% |
| TTCAGAATTCAATATCGCCT+TGG | - | tig0004025:9497-9516 | Msa1340310:intergenic | 35.0% | |
| TTTACTTCCCTTATCTCATG+CGG | + | tig0004025:9552-9571 | Msa1340310:intron | 35.0% | |
| GATGATAAGAGGCAATTGAA+GGG | - | tig0004025:9808-9827 | Msa1340310:intergenic | 35.0% | |
| TGATGATAAGAGGCAATTGA+AGG | - | tig0004025:9809-9828 | Msa1340310:intergenic | 35.0% | |
| ATCAGAACAGAAGCCATAAA+AGG | + | tig0004025:9825-9844 | Msa1340310:CDS | 35.0% | |
| ! | ACACAAGAAGCTACCTTTTA+TGG | - | tig0004025:9841-9860 | Msa1340310:intergenic | 35.0% |
| CACAATAAGTAATGCAGGAA+GGG | - | tig0004025:9897-9916 | Msa1340310:intergenic | 35.0% | |
| GTAAGCACAATAAGTAATGC+AGG | - | tig0004025:9902-9921 | Msa1340310:intergenic | 35.0% | |
| TCAGTTCAAGCAATTCTCTA+CGG | + | tig0004025:9976-9995 | Msa1340310:CDS | 35.0% | |
| CTATTGTAACTGGATGGAAT+TGG | - | tig0004025:10084-10103 | Msa1340310:intergenic | 35.0% | |
| ! | AACTAGGTTGCTATTGTAAC+TGG | - | tig0004025:10094-10113 | Msa1340310:intergenic | 35.0% |
| ! | TTTTACTAGCAGCACCTTTT+AGG | - | tig0004025:10239-10258 | Msa1340310:intergenic | 35.0% |
| CTAGAACCAATTAATCTTCC+TGG | + | tig0004025:10267-10286 | Msa1340310:CDS | 35.0% | |
| GAGGAATCTACAACAATAAG+AGG | - | tig0004025:10324-10343 | Msa1340310:intergenic | 35.0% | |
| ! | ATACCATCCTATCAGTTTTG+TGG | + | tig0004025:10551-10570 | Msa1340310:CDS | 35.0% |
| TGCTCTAATCAAATTTAGGG+TGG | + | tig0004025:10821-10840 | Msa1340310:three_prime_UTR | 35.0% | |
| ! | TCAAATTTAGGGTGGCAAAA+TGG | + | tig0004025:10829-10848 | Msa1340310:three_prime_UTR | 35.0% |
| ! | CAAATTTAGGGTGGCAAAAT+GGG | + | tig0004025:10830-10849 | Msa1340310:three_prime_UTR | 35.0% |
| TTTATAGCACTTATGCTGCG+TGG | + | tig0004025:5515-5534 | Msa1340310:CDS | 40.0% | |
| TCTTTCAGAAATCCTACAGG+TGG | - | tig0004025:5776-5795 | Msa1340310:intergenic | 40.0% | |
| TCTGAAAGAAGTTCCTCTTG+AGG | + | tig0004025:5787-5806 | Msa1340310:CDS | 40.0% | |
| TGTGGCACAACAGACTAATT+TGG | + | tig0004025:5841-5860 | Msa1340310:CDS | 40.0% | |
| !! | ATAGGTTGATTTGGAGCTTC+AGG | + | tig0004025:5888-5907 | Msa1340310:CDS | 40.0% |
| ! | GAACTCAGAGGACATTTTGT+TGG | + | tig0004025:5971-5990 | Msa1340310:CDS | 40.0% |
| CAATGTGATTGTAGCAACCA+GGG | + | tig0004025:6094-6113 | Msa1340310:intron | 40.0% | |
| !!! | GCAACCAGGGTTTTAAATAG+TGG | + | tig0004025:6107-6126 | Msa1340310:intron | 40.0% |
| ! | ACGACCACTATTTAAAACCC+TGG | - | tig0004025:6114-6133 | Msa1340310:intergenic | 40.0% |
| !!! | AGGGTTTTAAATAGTGGTCG+TGG | + | tig0004025:6113-6132 | Msa1340310:intron | 40.0% |
| TTATGTCGAAGCCCAAATCA+TGG | + | tig0004025:6239-6258 | Msa1340310:intron | 40.0% | |
| AAGGTTCGCAACCATGATTT+GGG | - | tig0004025:6253-6272 | Msa1340310:intergenic | 40.0% | |
| AAAGGTTCGCAACCATGATT+TGG | - | tig0004025:6254-6273 | Msa1340310:intergenic | 40.0% | |
| !! | AGAACATTGGTTCCTGTTTG+GGG | - | tig0004025:6452-6471 | Msa1340310:intergenic | 40.0% |
| !! | GAGAACATTGGTTCCTGTTT+GGG | - | tig0004025:6453-6472 | Msa1340310:intergenic | 40.0% |
| !! | TGAGAACATTGGTTCCTGTT+TGG | - | tig0004025:6454-6473 | Msa1340310:intergenic | 40.0% |
| AGAAGCTGAAAATTGCAGAC+AGG | - | tig0004025:6668-6687 | Msa1340310:intergenic | 40.0% | |
| CACAAAGAATGATAGCCTGA+AGG | + | tig0004025:6782-6801 | Msa1340310:CDS | 40.0% | |
| TAGCCTGAAGGAGAAAATGT+CGG | + | tig0004025:6794-6813 | Msa1340310:CDS | 40.0% | |
| TCCCTATTACACCATTCACA+AGG | + | tig0004025:6926-6945 | Msa1340310:CDS | 40.0% | |
| AGTATATTGATCCAACAGGC+CGG | - | tig0004025:7038-7057 | Msa1340310:intergenic | 40.0% | |
| !!! | GTCACCATTTTTAGAGCTTG+AGG | - | tig0004025:7073-7092 | Msa1340310:intergenic | 40.0% |
| !! | CGATTACTTTTACAACCGAG+TGG | + | tig0004025:7102-7121 | Msa1340310:CDS | 40.0% |
| CAATCACTGAATGAGGAAAC+TGG | + | tig0004025:7163-7182 | Msa1340310:CDS | 40.0% | |
| CATGGTATACTATATGCAGG+GGG | + | tig0004025:7401-7420 | Msa1340310:intron | 40.0% | |
| ! | AAAAGCATGGCTTGTCGAAA+AGG | - | tig0004025:7452-7471 | Msa1340310:intergenic | 40.0% |
| !! | TTCGACAAGCCATGCTTTTT+AGG | + | tig0004025:7453-7472 | Msa1340310:CDS | 40.0% |
| GCAAGCAATCCTAAAAAGCA+TGG | - | tig0004025:7465-7484 | Msa1340310:intergenic | 40.0% | |
| ! | TTGTTGTTGGATCCCAAATG+CGG | + | tig0004025:7905-7924 | Msa1340310:CDS | 40.0% |
| TGTGACTTCATACCGCATTT+GGG | - | tig0004025:7920-7939 | Msa1340310:intergenic | 40.0% | |
| TCACAGGTGATCCACTTTAT+AGG | + | tig0004025:7935-7954 | Msa1340310:CDS | 40.0% | |
| CACAGGTGATCCACTTTATA+GGG | + | tig0004025:7936-7955 | Msa1340310:CDS | 40.0% | |
| ACTGAGTACACCATTCGTTA+AGG | - | tig0004025:8796-8815 | Msa1340310:intergenic | 40.0% | |
| TTCGAAACCCCAATACCTAA+AGG | - | tig0004025:8861-8880 | Msa1340310:intergenic | 40.0% | |
| GCTAAAACTGGACATAGTTG+GGG | + | tig0004025:8882-8901 | Msa1340310:CDS | 40.0% | |
| GTAAATGTCACTCGTAGGTA+AGG | - | tig0004025:9254-9273 | Msa1340310:intergenic | 40.0% | |
| AGAAGGTAAATGTCACTCGT+AGG | - | tig0004025:9259-9278 | Msa1340310:intergenic | 40.0% | |
| ATTTACCTTCTCACCTAGTG+AGG | + | tig0004025:9268-9287 | Msa1340310:CDS | 40.0% | |
| AATGCAATGAGTACCTCACT+AGG | - | tig0004025:9284-9303 | Msa1340310:intergenic | 40.0% | |
| TGAACTTTCGTCTACCATCT+TGG | + | tig0004025:9455-9474 | Msa1340310:CDS | 40.0% | |
| AGTAAATACAGACTCAGACC+TGG | - | tig0004025:9538-9557 | Msa1340310:intergenic | 40.0% | |
| AGCTTATCCGCATGAGATAA+GGG | - | tig0004025:9562-9581 | Msa1340310:intergenic | 40.0% | |
| TAGCTTATCCGCATGAGATA+AGG | - | tig0004025:9563-9582 | Msa1340310:intergenic | 40.0% | |
| GCTTCTGTTCTGATGATAAG+AGG | - | tig0004025:9819-9838 | Msa1340310:intergenic | 40.0% | |
| GCACAATAAGTAATGCAGGA+AGG | - | tig0004025:9898-9917 | Msa1340310:intergenic | 40.0% | |
| GAACTGATGCATATTCAGGT+CGG | - | tig0004025:9963-9982 | Msa1340310:intergenic | 40.0% | |
| GCTTGAACTGATGCATATTC+AGG | - | tig0004025:9967-9986 | Msa1340310:intergenic | 40.0% | |
| ! | AGGTTGCTATTGTAACTGGA+TGG | - | tig0004025:10090-10109 | Msa1340310:intergenic | 40.0% |
| ATGCAAAAATCACCTGAACC+TGG | + | tig0004025:10177-10196 | Msa1340310:CDS | 40.0% | |
| TGGTGACTTACAATCATTCC+AGG | - | tig0004025:10288-10307 | Msa1340310:intergenic | 40.0% | |
| ! | ACAACAATAAGAGGTTGGTC+TGG | - | tig0004025:10315-10334 | Msa1340310:intergenic | 40.0% |
| ATTGTTGTAGATTCCTCCCT+TGG | + | tig0004025:10327-10346 | Msa1340310:CDS | 40.0% | |
| ACCACAAGAAAAACCGAAGA+AGG | - | tig0004025:10357-10376 | Msa1340310:intergenic | 40.0% | |
| ! | TTCGGTTTTTCTTGTGGTAC+CGG | + | tig0004025:10359-10378 | Msa1340310:CDS | 40.0% |
| ! | TGATTTTGTCCATCCAAACC+CGG | - | tig0004025:10381-10400 | Msa1340310:intergenic | 40.0% |
| CAAGCAGCAAGTTTCATGTT+CGG | + | tig0004025:10513-10532 | Msa1340310:CDS | 40.0% | |
| AAGCAGCAAGTTTCATGTTC+GGG | + | tig0004025:10514-10533 | Msa1340310:CDS | 40.0% | |
| TCATGTTCGGGAAAGGATTA+AGG | + | tig0004025:10526-10545 | Msa1340310:CDS | 40.0% | |
| TAGCCACAAAACTGATAGGA+TGG | - | tig0004025:10557-10576 | Msa1340310:intergenic | 40.0% | |
| CCTTTAGCCACAAAACTGAT+AGG | - | tig0004025:10561-10580 | Msa1340310:intergenic | 40.0% | |
| !! | CCTATCAGTTTTGTGGCTAA+AGG | + | tig0004025:10558-10577 | Msa1340310:CDS | 40.0% |
| !! | ATCAGTTTTGTGGCTAAAGG+AGG | + | tig0004025:10561-10580 | Msa1340310:CDS | 40.0% |
| TTGATGAAAAACGTGTCCGG+TGG | - | tig0004025:4938-4957 | Msa1340310:intergenic | 45.0% | |
| AAGTTCCTCTTGAGGATGTG+AGG | + | tig0004025:5795-5814 | Msa1340310:CDS | 45.0% | |
| ! | GATTTGGAGCTTCAGGAAGA+CGG | + | tig0004025:5895-5914 | Msa1340310:CDS | 45.0% |
| GAACCTAATACCGAACTCAG+AGG | + | tig0004025:5959-5978 | Msa1340310:CDS | 45.0% | |
| TGTCCTCTGAGTTCGGTATT+AGG | - | tig0004025:5965-5984 | Msa1340310:intergenic | 45.0% | |
| GCAATGTGATTGTAGCAACC+AGG | + | tig0004025:6093-6112 | Msa1340310:intron | 45.0% | |
| CAATGTCAAAGATCGCAACG+TGG | - | tig0004025:6151-6170 | Msa1340310:intergenic | 45.0% | |
| !! | GAACATTGGTTCCTGTTTGG+GGG | - | tig0004025:6451-6470 | Msa1340310:intergenic | 45.0% |
| ! | TGAGTGCATCAGCTCTAATG+TGG | + | tig0004025:6754-6773 | Msa1340310:CDS | 45.0% |
| ! | GAGTGCATCAGCTCTAATGT+GGG | + | tig0004025:6755-6774 | Msa1340310:CDS | 45.0% |
| CAGGCTATCATTCTTTGTGC+TGG | - | tig0004025:6781-6800 | Msa1340310:intergenic | 45.0% | |
| !! | AAAATGTCGGCTCTTGTTGC+CGG | + | tig0004025:6807-6826 | Msa1340310:CDS | 45.0% |
| TTCTTGACAAGCGGATAGAC+CGG | - | tig0004025:6829-6848 | Msa1340310:intergenic | 45.0% | |
| CAACTTTGACAGATCTTGGC+CGG | + | tig0004025:7016-7035 | Msa1340310:intron | 45.0% | |
| TCACTGAATGAGGAAACTGG+AGG | + | tig0004025:7166-7185 | Msa1340310:CDS | 45.0% | |
| ! | TTTAGGATTGCTTGCCGTAC+AGG | + | tig0004025:7470-7489 | Msa1340310:CDS | 45.0% |
| CTGTGACTTCATACCGCATT+TGG | - | tig0004025:7921-7940 | Msa1340310:intergenic | 45.0% | |
| CAAATGCGGTATGAAGTCAC+AGG | + | tig0004025:7919-7938 | Msa1340310:CDS | 45.0% | |
| ! | AGGTTGTCGGCTATTCTCTT+TGG | - | tig0004025:8499-8518 | Msa1340310:intergenic | 45.0% |
| AAGAGAATAGCCGACAACCT+TGG | + | tig0004025:8499-8518 | Msa1340310:CDS | 45.0% | |
| CTCTGTTGTTCCAAGGTTGT+CGG | - | tig0004025:8512-8531 | Msa1340310:intergenic | 45.0% | |
| CTTCAGTCTCTGTTGTTCCA+AGG | - | tig0004025:8519-8538 | Msa1340310:intergenic | 45.0% | |
| CTTCTTTGGTCCATCTGAAC+AGG | - | tig0004025:8746-8765 | Msa1340310:intergenic | 45.0% | |
| TATGAGCGTGCCTTAACGAA+TGG | + | tig0004025:8783-8802 | Msa1340310:CDS | 45.0% | |
| GGGGTTTCGAAAGCTAAAAC+TGG | + | tig0004025:8870-8889 | Msa1340310:CDS | 45.0% | |
| !! | CAGCACCAGAAAGTGTCAAA+TGG | - | tig0004025:8912-8931 | Msa1340310:intergenic | 45.0% |
| AGTTGTTCCAGCTGCTTCAT+CGG | + | tig0004025:9226-9245 | Msa1340310:CDS | 45.0% | |
| ! | TTTTGTCAATCACGCGACAG+TGG | + | tig0004025:9763-9782 | Msa1340310:CDS | 45.0% |
| TACGGACCTTATCTTCTTGC+CGG | + | tig0004025:9994-10013 | Msa1340310:CDS | 45.0% | |
| TTTGATGTCCCAATTTCCGG+TGG | - | tig0004025:10025-10044 | Msa1340310:intergenic | 45.0% | |
| ! | GGCTTTGATGTCCCAATTTC+CGG | - | tig0004025:10028-10047 | Msa1340310:intergenic | 45.0% |
| GGAAATTGGGACATCAAAGC+CGG | + | tig0004025:10027-10046 | Msa1340310:CDS | 45.0% | |
| TGCAACAGCTTTGCTAGAAC+CGG | - | tig0004025:10049-10068 | Msa1340310:intergenic | 45.0% | |
| !! | TAAGAGGTTGGTCTGGTTCT+TGG | - | tig0004025:10308-10327 | Msa1340310:intergenic | 45.0% |
| ! | GCCTTCTTCGGTTTTTCTTG+TGG | + | tig0004025:10353-10372 | Msa1340310:CDS | 45.0% |
| ! | TCGGTTTTTCTTGTGGTACC+GGG | + | tig0004025:10360-10379 | Msa1340310:CDS | 45.0% |
| !! | TTTTCTTGTGGTACCGGGTT+TGG | + | tig0004025:10365-10384 | Msa1340310:CDS | 45.0% |
| GTGTATAGCGATATGAGCTC+TGG | + | tig0004025:10441-10460 | Msa1340310:CDS | 45.0% | |
| !! | CGAACATGAAACTTGCTGCT+TGG | - | tig0004025:10515-10534 | Msa1340310:intergenic | 45.0% |
| GCAAGTTTCATGTTCGGGAA+AGG | + | tig0004025:10519-10538 | Msa1340310:CDS | 45.0% | |
| !!! | AAAATTTCAAAAATAATTTT+GGG | - | tig0004025:7828-7847 | Msa1340310:intergenic | 5.0% |
| !!! | ATTTTGTAAATTTTTTTTAT+TGG | - | tig0004025:10923-10942 | Msa1340310:intergenic | 5.0% |
| CCTCTGATGAAAGACGTGTC+TGG | - | tig0004025:4851-4870 | Msa1236560:intergenic | 50.0% | |
| CCAGACACGTCTTTCATCAG+AGG | + | tig0004025:4848-4867 | Msa1340310:five_prime_UTR | 50.0% | |
| CGAAACGTATGCGACTGAGT+CGG | - | tig0004025:5572-5591 | Msa1340310:intergenic | 50.0% | |
| CGACTCAGTCGCATACGTTT+CGG | + | tig0004025:5570-5589 | Msa1340310:CDS | 50.0% | |
| ACCGACCGATGAATCTGCTT+GGG | + | tig0004025:5658-5677 | Msa1340310:CDS | 50.0% | |
| AGCTGCCCAAGCAGATTCAT+CGG | - | tig0004025:5666-5685 | Msa1340310:intergenic | 50.0% | |
| GGTGTGTTTAAGCCACCTGT+AGG | + | tig0004025:5761-5780 | Msa1340310:CDS | 50.0% | |
| TGGTACACCGTATGGAGGAT+GGG | + | tig0004025:5934-5953 | Msa1340310:CDS | 50.0% | |
| AGTGGTCGTGGTAACAGTTG+TGG | + | tig0004025:6125-6144 | Msa1340310:intron | 50.0% | |
| ! | ATTGGTTCCTGTTTGGGGGA+GGG | - | tig0004025:6447-6466 | Msa1340310:intergenic | 50.0% |
| ! | GAGCCGACATTTTCTCCTTC+AGG | - | tig0004025:6800-6819 | Msa1340310:intergenic | 50.0% |
| GTGTAATAGGGAGCCCAAAC+AGG | - | tig0004025:6918-6937 | Msa1340310:intergenic | 50.0% | |
| TCTTCTCACAGCTATGCGAC+TGG | + | tig0004025:8281-8300 | Msa1340310:CDS | 50.0% | |
| TTTCACGGCACCTGTTCAGA+TGG | + | tig0004025:8733-8752 | Msa1340310:CDS | 50.0% | |
| !! | GACACTTTCTGGTGCTGCTA+CGG | + | tig0004025:8915-8934 | Msa1340310:CDS | 50.0% |
| GAGTACCTCACTAGGTGAGA+AGG | - | tig0004025:9276-9295 | Msa1340310:intergenic | 50.0% | |
| ACTTTATCTTTGCCCGCTCC+AGG | + | tig0004025:9517-9536 | Msa1340310:CDS | 50.0% | |
| ATACAGACTCAGACCTGGAG+CGG | - | tig0004025:9533-9552 | Msa1340310:intergenic | 50.0% | |
| TTGAAGGGTCAGCTTGTCAC+CGG | - | tig0004025:9793-9812 | Msa1340310:intergenic | 50.0% | |
| GTGTGACCGGCAAGAAGATA+AGG | - | tig0004025:10003-10022 | Msa1340310:intergenic | 50.0% | |
| CTAGCAAAGCTGTTGCAGAC+TGG | + | tig0004025:10052-10071 | Msa1340310:CDS | 50.0% | |
| GTTGTAGATTCCTCCCTTGG+CGG | + | tig0004025:10330-10349 | Msa1340310:CDS | 50.0% | |
| TTGTAGATTCCTCCCTTGGC+GGG | + | tig0004025:10331-10350 | Msa1340310:CDS | 50.0% | |
| ! | AGCGATATGAGCTCTGGTTC+AGG | + | tig0004025:10447-10466 | Msa1340310:CDS | 50.0% |
| CTGGTTCAGGAGTTAAGCTC+AGG | + | tig0004025:10460-10479 | Msa1340310:CDS | 50.0% | |
| GGGTGGCAAAATGGGATGAT+TGG | + | tig0004025:10838-10857 | Msa1340310:three_prime_UTR | 50.0% | |
| CACCGACCGATGAATCTGCT+TGG | + | tig0004025:5657-5676 | Msa1340310:CDS | 55.0% | |
| GCCCAAGCAGATTCATCGGT+CGG | - | tig0004025:5662-5681 | Msa1340310:intergenic | 55.0% | |
| CTTGGGCAGCTTTGCTTCCA+AGG | + | tig0004025:5675-5694 | Msa1340310:CDS | 55.0% | |
| AGCAGCCTCACATCCTCAAG+AGG | - | tig0004025:5803-5822 | Msa1340310:intergenic | 55.0% | |
| TCTTGAGGATGTGAGGCTGC+TGG | + | tig0004025:5802-5821 | Msa1340310:CDS | 55.0% | |
| GGAAGGTTCGATTCACGCTG+TGG | + | tig0004025:5823-5842 | Msa1340310:CDS | 55.0% | |
| CCATACGGTGTACCAGGAGT+CGG | - | tig0004025:5929-5948 | Msa1340310:intergenic | 55.0% | |
| ACTCCTGGTACACCGTATGG+AGG | + | tig0004025:5929-5948 | Msa1340310:CDS | 55.0% | |
| CATCCTCCATACGGTGTACC+AGG | - | tig0004025:5935-5954 | Msa1340310:intergenic | 55.0% | |
| CTGGTACACCGTATGGAGGA+TGG | + | tig0004025:5933-5952 | Msa1340310:CDS | 55.0% | |
| TACACCGTATGGAGGATGGG+AGG | + | tig0004025:5937-5956 | Msa1340310:CDS | 55.0% | |
| GGTTCCTCCCATCCTCCATA+CGG | - | tig0004025:5944-5963 | Msa1340310:intergenic | 55.0% | |
| TTGGTTCCTGTTTGGGGGAG+GGG | - | tig0004025:6446-6465 | Msa1340310:intergenic | 55.0% | |
| !! | CATTGGTTCCTGTTTGGGGG+AGG | - | tig0004025:6448-6467 | Msa1340310:intergenic | 55.0% |
| TCTCACAGCTATGCGACTGG+AGG | + | tig0004025:8284-8303 | Msa1340310:CDS | 55.0% | |
| CTCACAGCTATGCGACTGGA+GGG | + | tig0004025:8285-8304 | Msa1340310:CDS | 55.0% | |
| GGACATCAGTCCGTGAGTTC+TGG | + | tig0004025:8306-8325 | Msa1340310:CDS | 55.0% | |
| !! | TTCTGGTGCTGCTACGGAAC+CGG | + | tig0004025:8921-8940 | Msa1340310:CDS | 55.0% |
| TAAGGGTCCGATGAAGCAGC+TGG | - | tig0004025:9236-9255 | Msa1340310:intergenic | 55.0% | |
| CCATCAGCGTGAGTCCAAGA+TGG | - | tig0004025:9472-9491 | Msa1340310:intergenic | 55.0% | |
| CCATCTTGGACTCACGCTGA+TGG | + | tig0004025:9469-9488 | Msa1340310:CDS | 55.0% | |
| TACAGACTCAGACCTGGAGC+GGG | - | tig0004025:9532-9551 | Msa1340310:intergenic | 55.0% | |
| CCAATTTCCGGTGGTGTGAC+CGG | - | tig0004025:10016-10035 | Msa1340310:intergenic | 55.0% | |
| CGGTCACACCACCGGAAATT+GGG | + | tig0004025:10014-10033 | Msa1340310:CDS | 55.0% | |
| TGAAGAGCGACATCAGTGCC+AGG | - | tig0004025:10198-10217 | Msa1340310:intergenic | 55.0% | |
| ! | CTTGTGGTACCGGGTTTGGA+TGG | + | tig0004025:10369-10388 | Msa1340310:CDS | 55.0% |
| GAGGATGTGAGGCTGCTGGA+AGG | + | tig0004025:5806-5825 | Msa1340310:CDS | 60.0% | |
| TGGAGCTTCAGGAAGACGGC+TGG | + | tig0004025:5899-5918 | Msa1340310:CDS | 60.0% | |
| !! | ACGGCTGGTTTACCGACTCC+TGG | + | tig0004025:5914-5933 | Msa1340310:CDS | 60.0% |
| CCGACTCCTGGTACACCGTA+TGG | + | tig0004025:5926-5945 | Msa1340310:CDS | 60.0% | |
| TACCTACCCCTCCCCCAAAC+AGG | + | tig0004025:6437-6456 | Msa1340310:intron | 60.0% | |
| TTCCTGTTTGGGGGAGGGGT+AGG | - | tig0004025:6442-6461 | Msa1340310:intergenic | 60.0% | |
| ACAGATCTTGGCCGGCCTGT+TGG | + | tig0004025:7024-7043 | Msa1340310:intron | 60.0% | |
| ! | GACTCACGCTGATGGTGCCA+AGG | + | tig0004025:9477-9496 | Msa1340310:CDS | 60.0% |
| ATCACGCGACAGTGGAGTGC+CGG | + | tig0004025:9771-9790 | Msa1340310:CDS | 60.0% | |
| CTTCTTGCCGGTCACACCAC+CGG | + | tig0004025:10006-10025 | Msa1340310:CDS | 60.0% | |
| CCGGTCACACCACCGGAAAT+TGG | + | tig0004025:10013-10032 | Msa1340310:CDS | 60.0% | |
| GCGACATCAGTGCCAGGTTC+AGG | - | tig0004025:10192-10211 | Msa1340310:intergenic | 60.0% | |
| AACCGAAGAAGGCCCGCCAA+GGG | - | tig0004025:10346-10365 | Msa1340310:intergenic | 60.0% | |
| AAACCGAAGAAGGCCCGCCA+AGG | - | tig0004025:10347-10366 | Msa1340310:intergenic | 60.0% | |
| !! | GGTGCTGCTACGGAACCGGT+AGG | + | tig0004025:8925-8944 | Msa1340310:intron | 65.0% |
| ! | CTCCCTTGGCGGGCCTTCTT+CGG | + | tig0004025:10341-10360 | Msa1340310:CDS | 65.0% |
| CGAAGAAGGCCCGCCAAGGG+AGG | - | tig0004025:10343-10362 | Msa1340310:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0004025 | gene | 4822 | 10989 | 4822 | ID=Msa1340310;Name=Msa1340310 |
| tig0004025 | mRNA | 4822 | 10989 | 4822 | ID=Msa1340310-mRNA-1;Parent=Msa1340310;Name=Msa1340310-mRNA-1;_AED=0.08;_eAED=0.08;_QI=547|1|1|1|0.91|0.84|13|327|847 |
| tig0004025 | exon | 4822 | 5364 | 4822 | ID=Msa1340310-mRNA-1:exon:2532;Parent=Msa1340310-mRNA-1 |
| tig0004025 | exon | 5484 | 5992 | 5484 | ID=Msa1340310-mRNA-1:exon:2533;Parent=Msa1340310-mRNA-1 |
| tig0004025 | exon | 6745 | 6947 | 6745 | ID=Msa1340310-mRNA-1:exon:2534;Parent=Msa1340310-mRNA-1 |
| tig0004025 | exon | 7028 | 7225 | 7028 | ID=Msa1340310-mRNA-1:exon:2535;Parent=Msa1340310-mRNA-1 |
| tig0004025 | exon | 7420 | 7491 | 7420 | ID=Msa1340310-mRNA-1:exon:2536;Parent=Msa1340310-mRNA-1 |
| tig0004025 | exon | 7862 | 7957 | 7862 | ID=Msa1340310-mRNA-1:exon:2537;Parent=Msa1340310-mRNA-1 |
| tig0004025 | exon | 8248 | 8327 | 8248 | ID=Msa1340310-mRNA-1:exon:2538;Parent=Msa1340310-mRNA-1 |
| tig0004025 | exon | 8489 | 8567 | 8489 | ID=Msa1340310-mRNA-1:exon:2539;Parent=Msa1340310-mRNA-1 |
| tig0004025 | exon | 8732 | 8942 | 8732 | ID=Msa1340310-mRNA-1:exon:2540;Parent=Msa1340310-mRNA-1 |
| tig0004025 | exon | 9093 | 9289 | 9093 | ID=Msa1340310-mRNA-1:exon:2541;Parent=Msa1340310-mRNA-1 |
| tig0004025 | exon | 9433 | 9538 | 9433 | ID=Msa1340310-mRNA-1:exon:2542;Parent=Msa1340310-mRNA-1 |
| tig0004025 | exon | 9757 | 9846 | 9757 | ID=Msa1340310-mRNA-1:exon:2543;Parent=Msa1340310-mRNA-1 |
| tig0004025 | exon | 9956 | 10989 | 9956 | ID=Msa1340310-mRNA-1:exon:2544;Parent=Msa1340310-mRNA-1 |
| tig0004025 | five_prime_UTR | 4822 | 5364 | 4822 | ID=Msa1340310-mRNA-1:five_prime_utr;Parent=Msa1340310-mRNA-1 |
| tig0004025 | five_prime_UTR | 5484 | 5487 | 5484 | ID=Msa1340310-mRNA-1:five_prime_utr;Parent=Msa1340310-mRNA-1 |
| tig0004025 | CDS | 5488 | 5992 | 5488 | ID=Msa1340310-mRNA-1:cds;Parent=Msa1340310-mRNA-1 |
| tig0004025 | CDS | 6745 | 6947 | 6745 | ID=Msa1340310-mRNA-1:cds;Parent=Msa1340310-mRNA-1 |
| tig0004025 | CDS | 7028 | 7225 | 7028 | ID=Msa1340310-mRNA-1:cds;Parent=Msa1340310-mRNA-1 |
| tig0004025 | CDS | 7420 | 7491 | 7420 | ID=Msa1340310-mRNA-1:cds;Parent=Msa1340310-mRNA-1 |
| tig0004025 | CDS | 7862 | 7957 | 7862 | ID=Msa1340310-mRNA-1:cds;Parent=Msa1340310-mRNA-1 |
| tig0004025 | CDS | 8248 | 8327 | 8248 | ID=Msa1340310-mRNA-1:cds;Parent=Msa1340310-mRNA-1 |
| tig0004025 | CDS | 8489 | 8567 | 8489 | ID=Msa1340310-mRNA-1:cds;Parent=Msa1340310-mRNA-1 |
| tig0004025 | CDS | 8732 | 8942 | 8732 | ID=Msa1340310-mRNA-1:cds;Parent=Msa1340310-mRNA-1 |
| tig0004025 | CDS | 9093 | 9289 | 9093 | ID=Msa1340310-mRNA-1:cds;Parent=Msa1340310-mRNA-1 |
| tig0004025 | CDS | 9433 | 9538 | 9433 | ID=Msa1340310-mRNA-1:cds;Parent=Msa1340310-mRNA-1 |
| tig0004025 | CDS | 9757 | 9846 | 9757 | ID=Msa1340310-mRNA-1:cds;Parent=Msa1340310-mRNA-1 |
| tig0004025 | CDS | 9956 | 10662 | 9956 | ID=Msa1340310-mRNA-1:cds;Parent=Msa1340310-mRNA-1 |
| tig0004025 | three_prime_UTR | 10663 | 10989 | 10663 | ID=Msa1340310-mRNA-1:three_prime_utr;Parent=Msa1340310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
