Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0645490 | Msa0984140 | 0.841231 | 5.385917e-58 | -8.615850e-47 |
| Msa0645490 | Msa1182420 | 0.839482 | 1.542968e-57 | -8.615850e-47 |
| Msa0436700 | Msa0645490 | 0.910376 | 2.007971e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 52 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTAATTCTATATGTAATT+TGG | 0.113702 | 4_3:-50813704 | Msa0645490:three_prime_UTR |
| TCCATCCATGTTGCATTAAT+TGG | 0.147680 | 4_3:+50813824 | None:intergenic |
| TGAGGAACTCAAACAATTTA+AGG | 0.163299 | 4_3:-50814664 | Msa0645490:CDS |
| GTCCACAATCACATTTAAAT+TGG | 0.209735 | 4_3:+50814111 | None:intergenic |
| ATTATATATATCAATGTATT+TGG | 0.214681 | 4_3:-50813610 | Msa0645490:three_prime_UTR |
| GTGAACTCCTTGAACATTTC+CGG | 0.239784 | 4_3:+50815986 | None:intergenic |
| TCCTTGTTTGTGTTTGTTGC+CGG | 0.322987 | 4_3:+50816977 | None:intergenic |
| TCACATTTAAATTGGCCATT+TGG | 0.332786 | 4_3:+50814119 | None:intergenic |
| CTCCAACAATGTCAAATTGC+AGG | 0.336874 | 4_3:-50814759 | Msa0645490:CDS |
| GACCAAGCATTTGACATTGT+TGG | 0.343423 | 4_3:+50814720 | None:intergenic |
| CAATGTCAAATTGCAGGCTT+GGG | 0.366731 | 4_3:-50814753 | Msa0645490:CDS |
| CATAGTGACAATTACAGAAT+TGG | 0.378131 | 4_3:+50813772 | None:intergenic |
| CAATCTGTTTCAGCTTGAAT+AGG | 0.382751 | 4_3:+50817042 | None:intergenic |
| ACAATGTCAAATGCTTGGTC+TGG | 0.403543 | 4_3:-50814717 | Msa0645490:CDS |
| AGCCTGCAATTTGACATTGT+TGG | 0.403841 | 4_3:+50814757 | None:intergenic |
| ACAATGTCAAATTGCAGGCT+TGG | 0.414903 | 4_3:-50814754 | Msa0645490:CDS |
| TTGCAAAACTTCTTCATGAC+CGG | 0.453391 | 4_3:-50816996 | Msa0645490:CDS |
| AGGTACAAATTTCCAATTGT+AGG | 0.463626 | 4_3:-50813969 | Msa0645490:CDS |
| AAATTGTTTGAGTTCCTCAA+TGG | 0.471669 | 4_3:+50814668 | None:intergenic |
| CTCCAACAATGTCAAATGCT+TGG | 0.473618 | 4_3:-50814722 | Msa0645490:CDS |
| CTATTCAAGCTGAAACAGAT+TGG | 0.478401 | 4_3:-50817041 | Msa0645490:CDS |
| TAGTGGTTAATGAAATCTGA+TGG | 0.484600 | 4_3:-50813887 | Msa0645490:three_prime_UTR |
| CAATGTCAAATGCTTGGTCT+GGG | 0.486270 | 4_3:-50814716 | Msa0645490:CDS |
| ATGATTTGATAAAATTAACT+TGG | 0.492727 | 4_3:+50813855 | None:intergenic |
| ATGAGAAAGAACATAAATAG+TGG | 0.495321 | 4_3:-50813904 | Msa0645490:three_prime_UTR |
| GTTTCAGCTTGAATAGGAGA+TGG | 0.499512 | 4_3:+50817048 | None:intergenic |
| TATTCAAGCTGAAACAGATT+GGG | 0.504544 | 4_3:-50817040 | Msa0645490:CDS |
| AATTTGACATTGTTGGAGAA+TGG | 0.515371 | 4_3:+50814764 | None:intergenic |
| TGAACATTTCCGGTGCACTA+AGG | 0.516804 | 4_3:+50815996 | None:intergenic |
| AGGAAGGCTAAAACTCCAAA+TGG | 0.517189 | 4_3:-50814134 | Msa0645490:CDS |
| TAGTGCACCGGAAATGTTCA+AGG | 0.520766 | 4_3:-50815993 | Msa0645490:CDS |
| TCCAATTAATGCAACATGGA+TGG | 0.520892 | 4_3:-50813825 | Msa0645490:three_prime_UTR |
| AAAAGTGTATAATAGTAAGT+AGG | 0.524753 | 4_3:+50815371 | None:intergenic |
| CATTTGACATTGTTGGAGCA+TGG | 0.525905 | 4_3:+50814727 | None:intergenic |
| TAATGCAACATGGATGGACT+TGG | 0.527685 | 4_3:-50813819 | Msa0645490:three_prime_UTR |
| TATTAATGATGATTCCATTG+AGG | 0.530317 | 4_3:-50814682 | Msa0645490:CDS |
| GGCCAATTTAAATGTGATTG+TGG | 0.541689 | 4_3:-50814113 | Msa0645490:CDS |
| TTTCAGCTTGAATAGGAGAT+GGG | 0.542088 | 4_3:+50817049 | None:intergenic |
| CTCTGAAAATTGTAGGCTTG+GGG | 0.549249 | 4_3:-50814789 | Msa0645490:intron |
| AACTCAAACAATTTAAGGAA+AGG | 0.573878 | 4_3:-50814659 | Msa0645490:intron |
| GCAGAGCAACCTTAGTGCAC+CGG | 0.586537 | 4_3:-50816005 | Msa0645490:intron |
| CACTTCTGTCAATGAGATTG+TGG | 0.596935 | 4_3:-50813795 | Msa0645490:three_prime_UTR |
| AGTGGTTAATGAAATCTGAT+GGG | 0.604425 | 4_3:-50813886 | Msa0645490:three_prime_UTR |
| CAAGCTGAAACAGATTGGGT+AGG | 0.611478 | 4_3:-50817036 | Msa0645490:CDS |
| ACCGGCAACAAACACAAACA+AGG | 0.627964 | 4_3:-50816978 | Msa0645490:CDS |
| TTGTCAGTAGCAGTTATGTG+TGG | 0.629146 | 4_3:-50817269 | None:intergenic |
| ACTCTCCAATTAATGCAACA+TGG | 0.635926 | 4_3:-50813829 | Msa0645490:three_prime_UTR |
| AATGTCAAATTGCAGGCTTG+GGG | 0.640848 | 4_3:-50814752 | Msa0645490:CDS |
| ACAGCTGCACTAAATGCACC+AGG | 0.652832 | 4_3:-50814154 | Msa0645490:intron |
| CTGCACTAAATGCACCAGGA+AGG | 0.665837 | 4_3:-50814150 | Msa0645490:CDS |
| AAATGTTCAAGGAGTTCACA+TGG | 0.681365 | 4_3:-50815982 | Msa0645490:intron |
| GGCAACAAACACAAACAAGG+AGG | 0.739402 | 4_3:-50816975 | Msa0645490:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTCATGAATAAAAAAAAA+AGG | + | chr4_3:50814221-50814240 | None:intergenic | 10.0% |
| !!! | AAAATTGATTTATGTTTAAT+TGG | + | chr4_3:50816190-50816209 | None:intergenic | 10.0% |
| !! | ATTATATATATCAATGTATT+TGG | - | chr4_3:50817210-50817229 | Msa0645490:intron | 10.0% |
| !! | ATGAATAAAAAAAAAAGGAA+GGG | + | chr4_3:50814216-50814235 | None:intergenic | 15.0% |
| !!! | TTTTTATATATACATGTCAT+CGG | - | chr4_3:50814606-50814625 | Msa0645490:intron | 15.0% |
| !! | ATATATGTAAAATTGTTCTA+CGG | - | chr4_3:50815073-50815092 | Msa0645490:intron | 15.0% |
| !!! | CTTTATACAATATGAATTTT+TGG | - | chr4_3:50815309-50815328 | Msa0645490:intron | 15.0% |
| !!! | TACAAACTTTTTATTAAAGT+AGG | + | chr4_3:50815414-50815433 | None:intergenic | 15.0% |
| !! | TCTTGAAATAATAGAAAATT+TGG | + | chr4_3:50815521-50815540 | None:intergenic | 15.0% |
| !! | AATAAAAACTTTCATCTATT+AGG | + | chr4_3:50815870-50815889 | None:intergenic | 15.0% |
| !!! | TAATAGATGAAAGTTTTTAT+TGG | - | chr4_3:50815869-50815888 | Msa0645490:intron | 15.0% |
| !!! | CTTTTTATTTATAGCTTTTT+GGG | - | chr4_3:50816364-50816383 | Msa0645490:intron | 15.0% |
| !! | CTAAATTAATAATAGAGAAT+TGG | + | chr4_3:50816425-50816444 | None:intergenic | 15.0% |
| !! | CTGTTATTATTATTATTACA+AGG | - | chr4_3:50816564-50816583 | Msa0645490:intron | 15.0% |
| !! | ATGATTTGATAAAATTAACT+TGG | + | chr4_3:50816968-50816987 | None:intergenic | 15.0% |
| !! | TACTAATTCTATATGTAATT+TGG | - | chr4_3:50817116-50817135 | Msa0645490:intron | 15.0% |
| !!! | TTTTTTATTGATAAACTCAT+TGG | - | chr4_3:50817166-50817185 | Msa0645490:intron | 15.0% |
| !!! | TTGTTTTTATCTACTTTTGT+AGG | - | chr4_3:50813727-50813746 | Msa0645490:three_prime_UTR | 20.0% |
| !!! | ATTCTGAAATTGAGAATTAA+GGG | + | chr4_3:50813894-50813913 | None:intergenic | 20.0% |
| !!! | TATTCTGAAATTGAGAATTA+AGG | + | chr4_3:50813895-50813914 | None:intergenic | 20.0% |
| !!! | ATATGATTTTGTTCTTTCAA+AGG | - | chr4_3:50813912-50813931 | Msa0645490:three_prime_UTR | 20.0% |
| !! | CATGAATAAAAAAAAAAGGA+AGG | + | chr4_3:50814217-50814236 | None:intergenic | 20.0% |
| !! | TCTGATTAAAACAATAAAGA+AGG | + | chr4_3:50814493-50814512 | None:intergenic | 20.0% |
| !!! | TATTTCTAAGTTTTCTCAAA+AGG | - | chr4_3:50814521-50814540 | Msa0645490:intron | 20.0% |
| !! | TACAAATATTTGCTTTACTT+TGG | + | chr4_3:50814574-50814593 | None:intergenic | 20.0% |
| !! | TAAAGCAAATATTTGTAGTA+TGG | - | chr4_3:50814577-50814596 | Msa0645490:intron | 20.0% |
| !! | AACGATGTAAATCAAAATAA+AGG | + | chr4_3:50814666-50814685 | None:intergenic | 20.0% |
| !!! | TATTTTGATTTACATCGTTA+TGG | - | chr4_3:50814667-50814686 | Msa0645490:CDS | 20.0% |
| !! | CATATTATAAAAAAACATGC+AGG | + | chr4_3:50814796-50814815 | None:intergenic | 20.0% |
| !! | CAAATAAAACATATTTCCTA+TGG | - | chr4_3:50815182-50815201 | Msa0645490:intron | 20.0% |
| !!! | AAAAGTGTATAATAGTAAGT+AGG | + | chr4_3:50815452-50815471 | None:intergenic | 20.0% |
| !! | GAATTTCAAATTCGAATTTA+TGG | - | chr4_3:50815724-50815743 | Msa0645490:intron | 20.0% |
| !!! | ACAATTTTCAGAGTTTTTAA+TGG | + | chr4_3:50816024-50816043 | None:intergenic | 20.0% |
| !!! | TTAAAAACTCTGAAAATTGT+AGG | - | chr4_3:50816024-50816043 | Msa0645490:intron | 20.0% |
| !! | CCAAAAAGCTATAAATAAAA+AGG | + | chr4_3:50816366-50816385 | None:intergenic | 20.0% |
| !!! | CCTTTTTATTTATAGCTTTT+TGG | - | chr4_3:50816363-50816382 | Msa0645490:intron | 20.0% |
| !!! | CTTTTTACTTGTTCAATTTA+TGG | + | chr4_3:50816511-50816530 | None:intergenic | 20.0% |
| !!! | CATGTATATTTTTTTACCTT+GGG | + | chr4_3:50816754-50816773 | None:intergenic | 20.0% |
| !!! | ACATGTATATTTTTTTACCT+TGG | + | chr4_3:50816755-50816774 | None:intergenic | 20.0% |
| !! | GAAGTTTTGCAAATTCTTTT+TGG | + | chr4_3:50813816-50813835 | None:intergenic | 25.0% |
| ! | ACACAAAACATGAGAAAAAA+TGG | + | chr4_3:50813947-50813966 | None:intergenic | 25.0% |
| ! | TCAGATTTATTTGAAAAGAG+AGG | - | chr4_3:50814352-50814371 | Msa0645490:intron | 25.0% |
| ! | CAGATTTATTTGAAAAGAGA+GGG | - | chr4_3:50814353-50814372 | Msa0645490:intron | 25.0% |
| ! | CTGAACATACTCATAATAAA+AGG | + | chr4_3:50814892-50814911 | None:intergenic | 25.0% |
| !! | TGCTATTAGTATTTCTATCT+TGG | - | chr4_3:50814913-50814932 | Msa0645490:intron | 25.0% |
| ! | GTGATTTCATTTATGAATGA+TGG | - | chr4_3:50814935-50814954 | Msa0645490:intron | 25.0% |
| ! | ACAAAACTGACATAATAGTT+TGG | - | chr4_3:50815024-50815043 | Msa0645490:intron | 25.0% |
| ! | CCATAAGAATTTAACCTAAA+CGG | + | chr4_3:50815262-50815281 | None:intergenic | 25.0% |
| !! | CATATTTGTGAATTTTGAAC+TGG | + | chr4_3:50815584-50815603 | None:intergenic | 25.0% |
| ! | TGCAATAAAAAACAACAACA+TGG | + | chr4_3:50815660-50815679 | None:intergenic | 25.0% |
| !! | TATCAGAAGAAAGTTTTCAT+TGG | - | chr4_3:50815755-50815774 | Msa0645490:intron | 25.0% |
| !! | TTTTCATTGGTACTTATAAG+AGG | - | chr4_3:50815768-50815787 | Msa0645490:intron | 25.0% |
| ! | TTTCATTGGTACTTATAAGA+GGG | - | chr4_3:50815769-50815788 | Msa0645490:intron | 25.0% |
| ! | ATAGTTTATACTAAACCTGA+GGG | + | chr4_3:50815976-50815995 | None:intergenic | 25.0% |
| ! | AATAGTTTATACTAAACCTG+AGG | + | chr4_3:50815977-50815996 | None:intergenic | 25.0% |
| !! | GAGTTTTTAATGGTTGTAAA+TGG | + | chr4_3:50816014-50816033 | None:intergenic | 25.0% |
| ! | TATTAATGATGATTCCATTG+AGG | - | chr4_3:50816138-50816157 | Msa0645490:intron | 25.0% |
| ! | AACTCAAACAATTTAAGGAA+AGG | - | chr4_3:50816161-50816180 | Msa0645490:intron | 25.0% |
| ! | AGACTTAGAATTGTGTTAAT+TGG | - | chr4_3:50816472-50816491 | Msa0645490:intron | 25.0% |
| ! | TTGATAAAAAGACCTACAAT+TGG | + | chr4_3:50816866-50816885 | None:intergenic | 25.0% |
| ! | ATGAGAAAGAACATAAATAG+TGG | - | chr4_3:50816916-50816935 | Msa0645490:intron | 25.0% |
| !! | GTAATTGTCACTATGTTTTA+AGG | - | chr4_3:50817056-50817075 | Msa0645490:CDS | 25.0% |
| !!! | TATGTTTTAAGGACTAACTT+GGG | - | chr4_3:50817067-50817086 | Msa0645490:CDS | 25.0% |
| ACAGAAAACTAAAATGCAGA+GGG | + | chr4_3:50813629-50813648 | None:intergenic | 30.0% | |
| AACAGAAAACTAAAATGCAG+AGG | + | chr4_3:50813630-50813649 | None:intergenic | 30.0% | |
| ! | TAGTTTTCTGTTTGTGAACT+TGG | - | chr4_3:50813638-50813657 | Msa0645490:three_prime_UTR | 30.0% |
| TATTCAAGCTGAAACAGATT+GGG | - | chr4_3:50813780-50813799 | Msa0645490:three_prime_UTR | 30.0% | |
| CTTGCATGTTAGTTGAAATT+AGG | + | chr4_3:50814388-50814407 | None:intergenic | 30.0% | |
| ! | AAGGAGTTGAAATCTTTTCA+TGG | - | chr4_3:50814540-50814559 | Msa0645490:intron | 30.0% |
| ! | AGGAGTTGAAATCTTTTCAT+GGG | - | chr4_3:50814541-50814560 | Msa0645490:intron | 30.0% |
| ! | TGACATAATAGTTTGGAACT+TGG | - | chr4_3:50815031-50815050 | Msa0645490:intron | 30.0% |
| ! | GACATAATAGTTTGGAACTT+GGG | - | chr4_3:50815032-50815051 | Msa0645490:intron | 30.0% |
| ATGTAAAATTGTTCTACGGA+AGG | - | chr4_3:50815077-50815096 | Msa0645490:intron | 30.0% | |
| TGTAAAATTGTTCTACGGAA+GGG | - | chr4_3:50815078-50815097 | Msa0645490:intron | 30.0% | |
| TTAGAAGCAGGTTAATTTAG+TGG | + | chr4_3:50815147-50815166 | None:intergenic | 30.0% | |
| GGCAATCTAGTACTATAAAA+CGG | + | chr4_3:50815241-50815260 | None:intergenic | 30.0% | |
| ! | CCGTTTAGGTTAAATTCTTA+TGG | - | chr4_3:50815259-50815278 | Msa0645490:intron | 30.0% |
| TTATGGAACGACAATAGATA+TGG | - | chr4_3:50815276-50815295 | Msa0645490:intron | 30.0% | |
| ACAGGGTATGAAATATAACA+AGG | - | chr4_3:50815362-50815381 | Msa0645490:CDS | 30.0% | |
| ! | TTTCAAGAATCCTTTTATGC+TGG | - | chr4_3:50815533-50815552 | Msa0645490:intron | 30.0% |
| TGAAAACTTTCTTCTGATAC+AGG | + | chr4_3:50815754-50815773 | None:intergenic | 30.0% | |
| ! | GGTGAATTTAGGACTAAATA+GGG | - | chr4_3:50815904-50815923 | Msa0645490:intron | 30.0% |
| ! | GTGAATTTAGGACTAAATAG+GGG | - | chr4_3:50815905-50815924 | Msa0645490:intron | 30.0% |
| AATTTGACATTGTTGGAGAA+TGG | + | chr4_3:50816059-50816078 | None:intergenic | 30.0% | |
| ! | AAATTGTTTGAGTTCCTCAA+TGG | + | chr4_3:50816155-50816174 | None:intergenic | 30.0% |
| TGAGGAACTCAAACAATTTA+AGG | - | chr4_3:50816156-50816175 | Msa0645490:intron | 30.0% | |
| ! | ACAAGCATCACAATTTTCAA+AGG | - | chr4_3:50816271-50816290 | Msa0645490:intron | 30.0% |
| CAAACAATAGCTTCAATAAC+AGG | + | chr4_3:50816300-50816319 | None:intergenic | 30.0% | |
| TTGAAGCTATTGTTTGTGAA+AGG | - | chr4_3:50816304-50816323 | Msa0645490:intron | 30.0% | |
| TCACATTTAAATTGGCCATT+TGG | + | chr4_3:50816704-50816723 | None:intergenic | 30.0% | |
| GTCCACAATCACATTTAAAT+TGG | + | chr4_3:50816712-50816731 | None:intergenic | 30.0% | |
| TATACATGTCTTTGTGCTTA+TGG | - | chr4_3:50816766-50816785 | Msa0645490:intron | 30.0% | |
| ! | ACTTGATTCGATAATTGACA+TGG | - | chr4_3:50816811-50816830 | Msa0645490:intron | 30.0% |
| AGGTACAAATTTCCAATTGT+AGG | - | chr4_3:50816851-50816870 | Msa0645490:intron | 30.0% | |
| ! | TGTAGGTCTTTTTATCAAGT+AGG | - | chr4_3:50816868-50816887 | Msa0645490:intron | 30.0% |
| TAGTGGTTAATGAAATCTGA+TGG | - | chr4_3:50816933-50816952 | Msa0645490:intron | 30.0% | |
| AGTGGTTAATGAAATCTGAT+GGG | - | chr4_3:50816934-50816953 | Msa0645490:intron | 30.0% | |
| CATAGTGACAATTACAGAAT+TGG | + | chr4_3:50817051-50817070 | None:intergenic | 30.0% | |
| !!! | CTATGTTTTAAGGACTAACT+TGG | - | chr4_3:50817066-50817085 | Msa0645490:CDS | 30.0% |
| AATCGCTTGATTCTTTGTTC+TGG | - | chr4_3:50813667-50813686 | Msa0645490:three_prime_UTR | 35.0% | |
| ATCGCTTGATTCTTTGTTCT+GGG | - | chr4_3:50813668-50813687 | Msa0645490:three_prime_UTR | 35.0% | |
| ! | TTGATTCTTTGTTCTGGGTA+TGG | - | chr4_3:50813673-50813692 | Msa0645490:three_prime_UTR | 35.0% |
| TTTCAGCTTGAATAGGAGAT+GGG | + | chr4_3:50813774-50813793 | None:intergenic | 35.0% | |
| CAATCTGTTTCAGCTTGAAT+AGG | + | chr4_3:50813781-50813800 | None:intergenic | 35.0% | |
| CTATTCAAGCTGAAACAGAT+TGG | - | chr4_3:50813779-50813798 | Msa0645490:three_prime_UTR | 35.0% | |
| TTGCAAAACTTCTTCATGAC+CGG | - | chr4_3:50813824-50813843 | Msa0645490:three_prime_UTR | 35.0% | |
| ATTTACCAATCTATGTGTGC+AGG | + | chr4_3:50814301-50814320 | None:intergenic | 35.0% | |
| AAGCAATAAGCAGATATGTG+TGG | + | chr4_3:50814463-50814482 | None:intergenic | 35.0% | |
| TTTACATCGTTATGGACCTA+TGG | - | chr4_3:50814675-50814694 | Msa0645490:CDS | 35.0% | |
| AAATGTTCAAGGAGTTCACA+TGG | - | chr4_3:50814838-50814857 | Msa0645490:intron | 35.0% | |
| ATGGTTGAAGTTGCTATCAT+TGG | - | chr4_3:50815115-50815134 | Msa0645490:intron | 35.0% | |
| ATTAACCTGCTTCTAATGCT+TGG | - | chr4_3:50815151-50815170 | Msa0645490:intron | 35.0% | |
| ! | ATAGTACTAGATTGCCGTTT+AGG | - | chr4_3:50815245-50815264 | Msa0645490:intron | 35.0% |
| TTTGGATTGCCTTTGTCATT+AGG | - | chr4_3:50815327-50815346 | Msa0645490:intron | 35.0% | |
| AACCTAAGTCCTAATGACAA+AGG | + | chr4_3:50815339-50815358 | None:intergenic | 35.0% | |
| ! | ATTAGGACTTAGGTTGTTAC+AGG | - | chr4_3:50815344-50815363 | Msa0645490:intron | 35.0% |
| ! | TTAGGACTTAGGTTGTTACA+GGG | - | chr4_3:50815345-50815364 | Msa0645490:intron | 35.0% |
| ! | GAATTTTGAACTGGCAGAAA+GGG | + | chr4_3:50815575-50815594 | None:intergenic | 35.0% |
| ! | TGAATTTTGAACTGGCAGAA+AGG | + | chr4_3:50815576-50815595 | None:intergenic | 35.0% |
| GCATCATTTGAAGGATTTGA+AGG | + | chr4_3:50815638-50815657 | None:intergenic | 35.0% | |
| AACAACATGGCATCATTTGA+AGG | + | chr4_3:50815647-50815666 | None:intergenic | 35.0% | |
| !! | TTTTTATTGGTGCTTACGAG+AGG | - | chr4_3:50815882-50815901 | Msa0645490:intron | 35.0% |
| !! | TTTTATTGGTGCTTACGAGA+GGG | - | chr4_3:50815883-50815902 | Msa0645490:intron | 35.0% |
| ! | GGGTGAATTTAGGACTAAAT+AGG | - | chr4_3:50815903-50815922 | Msa0645490:intron | 35.0% |
| ! | AACTCTGAAAATTGTAGGCT+TGG | - | chr4_3:50816029-50816048 | Msa0645490:intron | 35.0% |
| ! | ACTCTGAAAATTGTAGGCTT+GGG | - | chr4_3:50816030-50816049 | Msa0645490:intron | 35.0% |
| CATCATGACTGAACTTTACA+AGG | - | chr4_3:50816622-50816641 | Msa0645490:intron | 35.0% | |
| GAACTTTACAAGGTCATTCA+CGG | - | chr4_3:50816632-50816651 | Msa0645490:intron | 35.0% | |
| GGCCAATTTAAATGTGATTG+TGG | - | chr4_3:50816707-50816726 | Msa0645490:intron | 35.0% | |
| ! | TTGTGGACAAGTTTTTGAAC+AGG | - | chr4_3:50816724-50816743 | Msa0645490:intron | 35.0% |
| TGTGCTTATGGATATCATGA+TGG | - | chr4_3:50816778-50816797 | Msa0645490:intron | 35.0% | |
| ! | TGGTAGTTTCTTTTGTTCAC+AGG | - | chr4_3:50816831-50816850 | Msa0645490:intron | 35.0% |
| ACTCTCCAATTAATGCAACA+TGG | - | chr4_3:50816991-50817010 | Msa0645490:CDS | 35.0% | |
| TCCAATTAATGCAACATGGA+TGG | - | chr4_3:50816995-50817014 | Msa0645490:CDS | 35.0% | |
| TCCATCCATGTTGCATTAAT+TGG | + | chr4_3:50816999-50817018 | None:intergenic | 35.0% | |
| !! | GGAATAATCGAAGCATTTTC+TGG | - | chr4_3:50817187-50817206 | Msa0645490:intron | 35.0% |
| GTTTCAGCTTGAATAGGAGA+TGG | + | chr4_3:50813775-50813794 | None:intergenic | 40.0% | |
| ! | TCCTTGTTTGTGTTTGTTGC+CGG | + | chr4_3:50813846-50813865 | None:intergenic | 40.0% |
| AGGTGATGCTAATGTTGATG+AGG | + | chr4_3:50814184-50814203 | None:intergenic | 40.0% | |
| TCATCAACATTAGCATCACC+TGG | - | chr4_3:50814183-50814202 | Msa0645490:intron | 40.0% | |
| CAATCTATGTGTGCAGGATA+CGG | + | chr4_3:50814295-50814314 | None:intergenic | 40.0% | |
| GTGAACTCCTTGAACATTTC+CGG | + | chr4_3:50814837-50814856 | None:intergenic | 40.0% | |
| AAAATTGTTCTACGGAAGGG+AGG | - | chr4_3:50815081-50815100 | Msa0645490:intron | 40.0% | |
| AGTGAAAGGGTTGAATCCAT+AGG | + | chr4_3:50815201-50815220 | None:intergenic | 40.0% | |
| TATAAAACGGCTGAGACAGT+GGG | + | chr4_3:50815228-50815247 | None:intergenic | 40.0% | |
| TGCCTTTGTCATTAGGACTT+AGG | - | chr4_3:50815334-50815353 | Msa0645490:intron | 40.0% | |
| GCAGTAAAGTCCAGCATAAA+AGG | + | chr4_3:50815546-50815565 | None:intergenic | 40.0% | |
| GAGAACTAAGCCTAACTAGA+GGG | - | chr4_3:50815694-50815713 | Msa0645490:intron | 40.0% | |
| AGGGTGAATTTCACATGAAG+TGG | - | chr4_3:50815788-50815807 | Msa0645490:intron | 40.0% | |
| GTTTATACTAAACCTGAGGG+TGG | + | chr4_3:50815973-50815992 | None:intergenic | 40.0% | |
| ! | CTCTGAAAATTGTAGGCTTG+GGG | - | chr4_3:50816031-50816050 | Msa0645490:intron | 40.0% |
| CTCCAACAATGTCAAATTGC+AGG | - | chr4_3:50816061-50816080 | Msa0645490:intron | 40.0% | |
| AGCCTGCAATTTGACATTGT+TGG | + | chr4_3:50816066-50816085 | None:intergenic | 40.0% | |
| ACAATGTCAAATTGCAGGCT+TGG | - | chr4_3:50816066-50816085 | Msa0645490:intron | 40.0% | |
| CAATGTCAAATTGCAGGCTT+GGG | - | chr4_3:50816067-50816086 | Msa0645490:intron | 40.0% | |
| AATGTCAAATTGCAGGCTTG+GGG | - | chr4_3:50816068-50816087 | Msa0645490:intron | 40.0% | |
| CATTTGACATTGTTGGAGCA+TGG | + | chr4_3:50816096-50816115 | None:intergenic | 40.0% | |
| CTCCAACAATGTCAAATGCT+TGG | - | chr4_3:50816098-50816117 | Msa0645490:intron | 40.0% | |
| GACCAAGCATTTGACATTGT+TGG | + | chr4_3:50816103-50816122 | None:intergenic | 40.0% | |
| ACAATGTCAAATGCTTGGTC+TGG | - | chr4_3:50816103-50816122 | Msa0645490:intron | 40.0% | |
| CAATGTCAAATGCTTGGTCT+GGG | - | chr4_3:50816104-50816123 | Msa0645490:intron | 40.0% | |
| AGCTATTGTTTGTGAAAGGC+AGG | - | chr4_3:50816308-50816327 | Msa0645490:intron | 40.0% | |
| !! | TCAGAGTGTGATTTTCAAGC+AGG | - | chr4_3:50816399-50816418 | Msa0645490:intron | 40.0% |
| TTTACAAGGTCATTCACGGT+TGG | - | chr4_3:50816636-50816655 | Msa0645490:intron | 40.0% | |
| !! | ATTTGGAGTTTTAGCCTTCC+TGG | + | chr4_3:50816687-50816706 | None:intergenic | 40.0% |
| AGGAAGGCTAAAACTCCAAA+TGG | - | chr4_3:50816686-50816705 | Msa0645490:intron | 40.0% | |
| ! | TTTTTGAACAGGCAATCCCA+AGG | - | chr4_3:50816735-50816754 | Msa0645490:intron | 40.0% |
| ! | TAATGCAACATGGATGGACT+TGG | - | chr4_3:50817001-50817020 | Msa0645490:CDS | 40.0% |
| CACTTCTGTCAATGAGATTG+TGG | - | chr4_3:50817025-50817044 | Msa0645490:CDS | 40.0% | |
| CAAGCTGAAACAGATTGGGT+AGG | - | chr4_3:50813784-50813803 | Msa0645490:three_prime_UTR | 45.0% | |
| ACCGGCAACAAACACAAACA+AGG | - | chr4_3:50813842-50813861 | Msa0645490:three_prime_UTR | 45.0% | |
| GGCAACAAACACAAACAAGG+AGG | - | chr4_3:50813845-50813864 | Msa0645490:three_prime_UTR | 45.0% | |
| !! | AAAAGGAAGGGCATCAAACC+AGG | + | chr4_3:50814204-50814223 | None:intergenic | 45.0% |
| CGTATCCTGCACACATAGAT+TGG | - | chr4_3:50814293-50814312 | Msa0645490:intron | 45.0% | |
| CTAGTCGTCTACATCACCAT+AGG | + | chr4_3:50814694-50814713 | None:intergenic | 45.0% | |
| TGAACATTTCCGGTGCACTA+AGG | + | chr4_3:50814827-50814846 | None:intergenic | 45.0% | |
| TAGTGCACCGGAAATGTTCA+AGG | - | chr4_3:50814827-50814846 | Msa0645490:intron | 45.0% | |
| AAGGGAGGAAAGTGGCATAA+TGG | - | chr4_3:50815096-50815115 | Msa0645490:intron | 45.0% | |
| TCTCACCAAGCATTAGAAGC+AGG | + | chr4_3:50815159-50815178 | None:intergenic | 45.0% | |
| GACAGTGGGATACAGTGAAA+GGG | + | chr4_3:50815214-50815233 | None:intergenic | 45.0% | |
| AGACAGTGGGATACAGTGAA+AGG | + | chr4_3:50815215-50815234 | None:intergenic | 45.0% | |
| CTATAAAACGGCTGAGACAG+TGG | + | chr4_3:50815229-50815248 | None:intergenic | 45.0% | |
| TTATTGCACGTCACATGCAG+TGG | - | chr4_3:50815672-50815691 | Msa0645490:intron | 45.0% | |
| GGAGAACTAAGCCTAACTAG+AGG | - | chr4_3:50815693-50815712 | Msa0645490:intron | 45.0% | |
| TTCCTCAAGTCCCTCTAGTT+AGG | + | chr4_3:50815707-50815726 | None:intergenic | 45.0% | |
| GCTTACGAGAGGGTGAATTT+AGG | - | chr4_3:50815893-50815912 | Msa0645490:intron | 45.0% | |
| GCTAAAATTAAGCCACCCTC+AGG | - | chr4_3:50815958-50815977 | Msa0645490:intron | 45.0% | |
| CGATGGAGCAAACACACACA+AGG | + | chr4_3:50813600-50813619 | None:intergenic | 50.0% | |
| AATGCAGAGGGATGAGACGA+TGG | + | chr4_3:50813617-50813636 | None:intergenic | 50.0% | |
| !! | CAGGATACGGACTGGTCTTA+TGG | + | chr4_3:50814282-50814301 | None:intergenic | 50.0% |
| TATGTGTGCAGGATACGGAC+TGG | + | chr4_3:50814290-50814309 | None:intergenic | 50.0% | |
| TTCTACGGAAGGGAGGAAAG+TGG | - | chr4_3:50815088-50815107 | Msa0645490:intron | 50.0% | |
| AGCCTAACTAGAGGGACTTG+AGG | - | chr4_3:50815702-50815721 | Msa0645490:intron | 50.0% | |
| ACAGCTGCACTAAATGCACC+AGG | - | chr4_3:50816666-50816685 | Msa0645490:intron | 50.0% | |
| CTGCACTAAATGCACCAGGA+AGG | - | chr4_3:50816670-50816689 | Msa0645490:intron | 50.0% | |
| GCAGAGCAACCTTAGTGCAC+CGG | - | chr4_3:50814815-50814834 | Msa0645490:intron | 55.0% | |
| GAGAACCAAGCCTCGCTAGA+GGG | - | chr4_3:50815810-50815829 | Msa0645490:intron | 55.0% | |
| GGAGAACCAAGCCTCGCTAG+AGG | - | chr4_3:50815809-50815828 | Msa0645490:intron | 60.0% | |
| CAAGTCCCTCTAGCGAGGCT+TGG | + | chr4_3:50815818-50815837 | None:intergenic | 60.0% | |
| AGCCTCGCTAGAGGGACTTG+AGG | - | chr4_3:50815818-50815837 | Msa0645490:intron | 60.0% | |
| CTCCTCAAGTCCCTCTAGCG+AGG | + | chr4_3:50815823-50815842 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 50813566 | 50817276 | 50813566 | ID=Msa0645490;Name=Msa0645490 |
| chr4_3 | mRNA | 50813566 | 50817276 | 50813566 | ID=Msa0645490-mRNA-1;Parent=Msa0645490;Name=Msa0645490-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.5|0.71|1|0.66|0.71|7|387|160 |
| chr4_3 | exon | 50813566 | 50813989 | 50813566 | ID=Msa0645490-mRNA-1:exon:12184;Parent=Msa0645490-mRNA-1 |
| chr4_3 | exon | 50814086 | 50814172 | 50814086 | ID=Msa0645490-mRNA-1:exon:12183;Parent=Msa0645490-mRNA-1 |
| chr4_3 | exon | 50814660 | 50814796 | 50814660 | ID=Msa0645490-mRNA-1:exon:12182;Parent=Msa0645490-mRNA-1 |
| chr4_3 | exon | 50815352 | 50815407 | 50815352 | ID=Msa0645490-mRNA-1:exon:12181;Parent=Msa0645490-mRNA-1 |
| chr4_3 | exon | 50815983 | 50816023 | 50815983 | ID=Msa0645490-mRNA-1:exon:12180;Parent=Msa0645490-mRNA-1 |
| chr4_3 | exon | 50816976 | 50817093 | 50816976 | ID=Msa0645490-mRNA-1:exon:12179;Parent=Msa0645490-mRNA-1 |
| chr4_3 | exon | 50817270 | 50817276 | 50817270 | ID=Msa0645490-mRNA-1:exon:12178;Parent=Msa0645490-mRNA-1 |
| chr4_3 | CDS | 50817270 | 50817276 | 50817270 | ID=Msa0645490-mRNA-1:cds;Parent=Msa0645490-mRNA-1 |
| chr4_3 | CDS | 50816976 | 50817093 | 50816976 | ID=Msa0645490-mRNA-1:cds;Parent=Msa0645490-mRNA-1 |
| chr4_3 | CDS | 50815983 | 50816023 | 50815983 | ID=Msa0645490-mRNA-1:cds;Parent=Msa0645490-mRNA-1 |
| chr4_3 | CDS | 50815352 | 50815407 | 50815352 | ID=Msa0645490-mRNA-1:cds;Parent=Msa0645490-mRNA-1 |
| chr4_3 | CDS | 50814660 | 50814796 | 50814660 | ID=Msa0645490-mRNA-1:cds;Parent=Msa0645490-mRNA-1 |
| chr4_3 | CDS | 50814086 | 50814172 | 50814086 | ID=Msa0645490-mRNA-1:cds;Parent=Msa0645490-mRNA-1 |
| chr4_3 | CDS | 50813953 | 50813989 | 50813953 | ID=Msa0645490-mRNA-1:cds;Parent=Msa0645490-mRNA-1 |
| chr4_3 | three_prime_UTR | 50813566 | 50813952 | 50813566 | ID=Msa0645490-mRNA-1:three_prime_utr;Parent=Msa0645490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
