Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646960 | KAG4967039.1 | 76.236 | 627 | 120 | 5 | 1 | 627 | 1 | 598 | 0.0 | 849 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646960 | sp|O04658|NOP5A_ARATH | 85.223 | 291 | 43 | 0 | 238 | 528 | 154 | 444 | 0.0 | 532 |
| Msa0646960 | sp|O04658|NOP5A_ARATH | 73.077 | 156 | 42 | 0 | 1 | 156 | 1 | 156 | 1.36e-68 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0646960 | Msa0646990 | 0.810648 | 1.038214e-50 | -8.615850e-47 |
| Msa0646960 | Msa0925320 | 0.813800 | 2.130789e-51 | -8.615850e-47 |
| Msa0646960 | Msa1215330 | 0.825827 | 3.790352e-54 | -8.615850e-47 |
| Msa0563620 | Msa0646960 | 0.825531 | 4.455172e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646960 | MtrunA17_Chr4g0035431 | 97.277 | 404 | 6 | 3 | 238 | 640 | 154 | 553 | 0.0 | 782 |
| Msa0646960 | MtrunA17_Chr4g0035431 | 95.513 | 156 | 7 | 0 | 1 | 156 | 1 | 156 | 4.15e-97 | 308 |
| Msa0646960 | MtrunA17_Chr5g0397481 | 80.320 | 437 | 52 | 2 | 238 | 640 | 154 | 590 | 0.0 | 618 |
| Msa0646960 | MtrunA17_Chr5g0397481 | 81.410 | 156 | 29 | 0 | 1 | 156 | 1 | 156 | 3.49e-82 | 270 |
| Msa0646960 | MtrunA17_Chr4g0057761 | 50.826 | 242 | 115 | 3 | 240 | 477 | 167 | 408 | 9.42e-76 | 251 |
| Msa0646960 | MtrunA17_Chr4g0057761 | 35.928 | 167 | 94 | 4 | 1 | 156 | 3 | 167 | 5.22e-18 | 87.8 |
| Msa0646960 | MtrunA17_Chr5g0397491 | 70.588 | 153 | 43 | 1 | 10 | 160 | 6 | 158 | 1.39e-66 | 215 |
| Msa0646960 | MtrunA17_Chr7g0228641 | 32.231 | 242 | 152 | 2 | 224 | 464 | 87 | 317 | 5.99e-31 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646960 | AT5G27120.1 | 85.223 | 291 | 43 | 0 | 238 | 528 | 154 | 444 | 0.0 | 532 |
| Msa0646960 | AT5G27120.1 | 73.077 | 156 | 42 | 0 | 1 | 156 | 1 | 156 | 1.39e-69 | 236 |
| Msa0646960 | AT3G05060.1 | 74.855 | 346 | 65 | 1 | 238 | 583 | 155 | 478 | 2.25e-176 | 512 |
| Msa0646960 | AT3G05060.1 | 69.872 | 156 | 47 | 0 | 1 | 156 | 2 | 157 | 1.02e-66 | 228 |
| Msa0646960 | AT5G27140.2 | 68.015 | 272 | 81 | 1 | 238 | 509 | 126 | 391 | 5.44e-121 | 367 |
| Msa0646960 | AT5G27140.2 | 52.229 | 157 | 45 | 2 | 1 | 156 | 1 | 128 | 1.97e-40 | 154 |
| Msa0646960 | AT5G27140.1 | 59.459 | 333 | 103 | 3 | 242 | 574 | 128 | 428 | 8.84e-121 | 366 |
| Msa0646960 | AT5G27140.1 | 50.932 | 161 | 49 | 2 | 1 | 160 | 1 | 132 | 5.72e-41 | 155 |
| Msa0646960 | AT1G56110.1 | 53.878 | 245 | 103 | 3 | 240 | 477 | 167 | 408 | 3.23e-82 | 269 |
| Msa0646960 | AT1G56110.1 | 33.533 | 167 | 98 | 4 | 1 | 156 | 3 | 167 | 2.34e-17 | 85.9 |
| Msa0646960 | AT3G12860.1 | 52.653 | 245 | 106 | 3 | 240 | 477 | 167 | 408 | 1.76e-79 | 261 |
| Msa0646960 | AT3G12860.1 | 32.121 | 165 | 103 | 2 | 1 | 156 | 3 | 167 | 4.04e-17 | 85.1 |
| Msa0646960 | AT1G60170.1 | 27.547 | 265 | 178 | 2 | 207 | 471 | 70 | 320 | 6.23e-24 | 106 |
Find 175 sgRNAs with CRISPR-Local
Find 356 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCACCAAACCCTAATTT+AGG | 0.123858 | 4_3:+52918122 | Msa0646960:five_prime_UTR |
| ATCAGGTACAAATTCGAATT+TGG | 0.128688 | 4_3:-52918169 | None:intergenic |
| AAATTCGAATTTGGGGATTT+TGG | 0.151685 | 4_3:-52918160 | None:intergenic |
| TGAAGCTTAAACCCTAAATT+AGG | 0.161216 | 4_3:-52918134 | None:intergenic |
| ATGAATCCTTATTTATTTAA+TGG | 0.209120 | 4_3:+52923504 | Msa0646960:three_prime_UTR |
| AGAGAAGGAGGCGCTGGTTT+AGG | 0.220745 | 4_3:-52918084 | None:intergenic |
| CTTATCCCATTAAATAAATA+AGG | 0.229729 | 4_3:-52923510 | None:intergenic |
| AAAGAAAGAAAAGAAGAAAA+AGG | 0.230780 | 4_3:+52923124 | Msa0646960:CDS |
| TTATGTTTGTGAATGGAAAT+AGG | 0.241181 | 4_3:+52923587 | Msa0646960:three_prime_UTR |
| TGAACACAAGGGCTAGTATT+AGG | 0.241356 | 4_3:+52920828 | Msa0646960:intron |
| GGCTATCAGGTGTGATGCAC+TGG | 0.262961 | 4_3:+52922656 | Msa0646960:CDS |
| CAAAGACTGCTTTGGCTATC+AGG | 0.264189 | 4_3:+52922643 | Msa0646960:CDS |
| CCCAACCATAGCAGTCAAAT+TGG | 0.271023 | 4_3:-52922403 | None:intergenic |
| GAGGATGATCCGAATTATTA+TGG | 0.274068 | 4_3:+52920974 | Msa0646960:CDS |
| TGAATCCTTATTTATTTAAT+GGG | 0.290361 | 4_3:+52923505 | Msa0646960:three_prime_UTR |
| TCAGGTACAAATTCGAATTT+GGG | 0.306320 | 4_3:-52918168 | None:intergenic |
| TTCTTAACAACTTCCTCTTC+TGG | 0.306909 | 4_3:-52923185 | None:intergenic |
| GAGAAGGAGGCGCTGGTTTA+GGG | 0.308595 | 4_3:-52918083 | None:intergenic |
| TTTCTCCTCCATTCGAAGTA+TGG | 0.312200 | 4_3:-52923262 | None:intergenic |
| CTTCACCAAACCCTAATTTA+GGG | 0.323684 | 4_3:+52918123 | Msa0646960:five_prime_UTR |
| GATAAGGCATCAAAACCTTC+TGG | 0.329032 | 4_3:-52920312 | None:intergenic |
| TTGTCATATGCTTCGATCTT+GGG | 0.331868 | 4_3:-52922865 | None:intergenic |
| GGTAGTACCGTGCAGATTCT+TGG | 0.334079 | 4_3:+52922489 | Msa0646960:CDS |
| GAGTATCATTAAGGATAAAT+TGG | 0.339774 | 4_3:+52919613 | Msa0646960:CDS |
| CTTGTCATATGCTTCGATCT+TGG | 0.340268 | 4_3:-52922866 | None:intergenic |
| ACTTGACAGACCTTGCATAT+TGG | 0.347594 | 4_3:-52921922 | None:intergenic |
| GATGTTGTCAACTATGATTT+TGG | 0.347858 | 4_3:-52921900 | None:intergenic |
| GCTAAACTTCAGCTTGTATC+TGG | 0.349651 | 4_3:-52919853 | None:intergenic |
| GAAGCTTAAACCCTAAATTA+GGG | 0.350432 | 4_3:-52918133 | None:intergenic |
| CGCTTTGCCGGTTCTGCTAA+AGG | 0.358145 | 4_3:+52922838 | Msa0646960:CDS |
| ACTATGATCGTTCAGGCTAT+TGG | 0.363794 | 4_3:+52921794 | Msa0646960:CDS |
| TTCATGTTAATGCAATTTGT+AGG | 0.366624 | 4_3:+52923478 | Msa0646960:three_prime_UTR |
| TTAAACCCTAAATTAGGGTT+TGG | 0.367394 | 4_3:-52918128 | None:intergenic |
| ATATCAATGGGAACTGAAAT+TGG | 0.371359 | 4_3:+52922270 | Msa0646960:CDS |
| CGTGAAAAGGTGGTTGAATC+AGG | 0.379236 | 4_3:-52918186 | None:intergenic |
| TAATTAATTATGTTTGTGAA+TGG | 0.379604 | 4_3:+52923580 | Msa0646960:three_prime_UTR |
| GGCCTAGTTCTTTGCCTTCA+AGG | 0.381274 | 4_3:-52922816 | None:intergenic |
| ATTTACCATGCATCCTTGAT+TGG | 0.385846 | 4_3:+52922573 | Msa0646960:CDS |
| TGCATTATTTCACTTTGATA+AGG | 0.391357 | 4_3:-52920328 | None:intergenic |
| GTATTTGTTGAAGATGTTGT+AGG | 0.393067 | 4_3:+52920914 | Msa0646960:CDS |
| GAAAGTAAAGAAAGAAAAGA+AGG | 0.394518 | 4_3:+52923100 | Msa0646960:CDS |
| GTCAGAGGAGGTTGAGGCAG+AGG | 0.395543 | 4_3:+52922230 | Msa0646960:CDS |
| TCCTCTTCACCATAATAATT+CGG | 0.396139 | 4_3:-52920983 | None:intergenic |
| AAAGCTTGGGAGTATCATTA+AGG | 0.404387 | 4_3:+52919604 | Msa0646960:CDS |
| CCATGCATCCTTGATTGGTC+AGG | 0.410857 | 4_3:+52922578 | Msa0646960:CDS |
| GCAGCTACTTTGCTAATTGA+TGG | 0.411124 | 4_3:+52919509 | Msa0646960:CDS |
| AAAGAACTAGGCCGCTTTGC+CGG | 0.414173 | 4_3:+52922826 | Msa0646960:CDS |
| CCAATTTGACTGCTATGGTT+GGG | 0.414603 | 4_3:+52922403 | Msa0646960:CDS |
| GCTATGGTTGGGGAGCTTGT+TGG | 0.416805 | 4_3:+52922414 | Msa0646960:CDS |
| AAAAGGCAGAGGTGCAGAAT+GGG | 0.421248 | 4_3:+52923237 | Msa0646960:CDS |
| ACAGTTGGTTGTGGCGGTGC+AGG | 0.421938 | 4_3:+52920263 | Msa0646960:intron |
| GAACACAAGGGCTAGTATTA+GGG | 0.424051 | 4_3:+52920829 | Msa0646960:intron |
| TGAGACAAACCCAAGCTCAT+AGG | 0.424290 | 4_3:-52919822 | None:intergenic |
| TTGTCAGTAACAGGAGGCTC+TGG | 0.426836 | 4_3:-52923074 | None:intergenic |
| TGTTCACAACAATGCTGTTA+TGG | 0.427408 | 4_3:+52919731 | Msa0646960:CDS |
| TATTAGAGAGCTCTGTGATC+AGG | 0.429227 | 4_3:+52922311 | Msa0646960:CDS |
| TATGTATCAGCTAATCAATA+TGG | 0.435818 | 4_3:+52923389 | Msa0646960:three_prime_UTR |
| CGGTGCAGGAGTATGAGTTT+AGG | 0.436755 | 4_3:+52920277 | Msa0646960:CDS |
| GGGCTTCCCTTTAGCAGAAC+CGG | 0.437955 | 4_3:-52922845 | None:intergenic |
| CTTTGGTTCAATAACTGAAT+CGG | 0.444467 | 4_3:-52923024 | None:intergenic |
| AGCTAATAATATACCTTAGC+TGG | 0.444788 | 4_3:-52922922 | None:intergenic |
| CACTGCAGATGCTGCTAGAA+AGG | 0.446366 | 4_3:+52919264 | Msa0646960:CDS |
| TCCATTGCAGAATTAGACTT+TGG | 0.447306 | 4_3:-52923041 | None:intergenic |
| GCAACATTCTACTCAACTTA+AGG | 0.447735 | 4_3:+52918211 | Msa0646960:five_prime_UTR |
| TGCAGCTTGAAGCACGTTTG+AGG | 0.448590 | 4_3:+52922791 | Msa0646960:intron |
| GGTGGATACTATGATCGTTC+AGG | 0.449376 | 4_3:+52921787 | Msa0646960:intron |
| AAGCATGCTACTCCAAAGTA+TGG | 0.450023 | 4_3:+52922546 | Msa0646960:CDS |
| GACATGGCCCCTATGAGCTT+GGG | 0.453354 | 4_3:+52919813 | Msa0646960:CDS |
| ACTTGCTGCAAAGACTGCTT+TGG | 0.456044 | 4_3:+52922635 | Msa0646960:CDS |
| AGACATGGCCCCTATGAGCT+TGG | 0.460296 | 4_3:+52919812 | Msa0646960:CDS |
| GAGGAAGAAGCAGGCAGAGG+AGG | 0.461221 | 4_3:+52923295 | Msa0646960:CDS |
| GCAAGATAACACCATGGGAT+TGG | 0.463401 | 4_3:+52922686 | Msa0646960:CDS |
| GCTTTGCCGGTTCTGCTAAA+GGG | 0.467457 | 4_3:+52922839 | Msa0646960:CDS |
| GAGACAAACCCAAGCTCATA+GGG | 0.467946 | 4_3:-52919821 | None:intergenic |
| ACTAAATAGAACAAAGCATA+TGG | 0.469149 | 4_3:-52923615 | None:intergenic |
| AAAGAAGGAATCTACTGAAA+AGG | 0.469310 | 4_3:+52923220 | Msa0646960:CDS |
| AGTTCAAGGGGAAAATTTCT+CGG | 0.473372 | 4_3:+52922610 | Msa0646960:CDS |
| TATGACAAGGATAGAAAGAA+AGG | 0.477667 | 4_3:+52922880 | Msa0646960:CDS |
| TTGCAAAAGTGGATCTGAGA+TGG | 0.480004 | 4_3:-52923640 | None:intergenic |
| TGCAAAAGTGGATCTGAGAT+GGG | 0.480064 | 4_3:-52923639 | None:intergenic |
| TGACTTCAGTGGATAATATG+TGG | 0.488967 | 4_3:+52923545 | Msa0646960:three_prime_UTR |
| AGCTGGAGTTATCAGTCCTC+CGG | 0.492874 | 4_3:-52922905 | None:intergenic |
| GGAGGTTGAGGCAGAGGTGA+AGG | 0.493001 | 4_3:+52922236 | Msa0646960:CDS |
| CCAACCATAGCAGTCAAATT+GGG | 0.494028 | 4_3:-52922402 | None:intergenic |
| CAATTTGACTGCTATGGTTG+GGG | 0.494927 | 4_3:+52922404 | Msa0646960:CDS |
| TGCAAGGTCTGTCAAGTTGA+TGG | 0.498706 | 4_3:+52921928 | Msa0646960:CDS |
| GGTGTTGCTGAGTCAAAGCT+TGG | 0.499283 | 4_3:+52919590 | Msa0646960:CDS |
| CCCAATTTGACTGCTATGGT+TGG | 0.502179 | 4_3:+52922402 | Msa0646960:CDS |
| AGTAGCTGCCTCTAGAGCTT+CGG | 0.504643 | 4_3:-52919495 | None:intergenic |
| ACATATTATCCACTGAAGTC+AGG | 0.507380 | 4_3:-52923543 | None:intergenic |
| TGGAGCGGCCTGACCAATCA+AGG | 0.509639 | 4_3:-52922586 | None:intergenic |
| GAAGCTTCAGTGATATCAAT+GGG | 0.510808 | 4_3:+52922258 | Msa0646960:CDS |
| CACTTTGAAAATAGCAAACC+CGG | 0.515199 | 4_3:-52918771 | None:intergenic |
| GAAAAGGCAGAGGTGCAGAA+TGG | 0.516092 | 4_3:+52923236 | Msa0646960:CDS |
| GTTTATTAAGCTTCCTCCGT+GGG | 0.518550 | 4_3:-52922451 | None:intergenic |
| CATTGTGAAAATGAAACGTT+AGG | 0.525745 | 4_3:+52919569 | Msa0646960:CDS |
| GGAAGCTTCAGTGATATCAA+TGG | 0.526035 | 4_3:+52922257 | Msa0646960:CDS |
| TGCACCCAATTTGACTGCTA+TGG | 0.526972 | 4_3:+52922398 | Msa0646960:CDS |
| AATTGATGGCAAAGCTAGCA+AGG | 0.527868 | 4_3:+52919523 | Msa0646960:CDS |
| AAAGAGGAAGAAGCAGGCAG+AGG | 0.529182 | 4_3:+52923292 | Msa0646960:CDS |
| TACTGTTCGAAACACCGGCC+GGG | 0.531557 | 4_3:+52918753 | Msa0646960:CDS |
| CAACTCAGAGAAGGAGGCGC+TGG | 0.533768 | 4_3:-52918090 | None:intergenic |
| ATGCCATGAGGGTTCGTGAA+TGG | 0.538629 | 4_3:+52921852 | Msa0646960:CDS |
| TACTACCAGGCTGCTTTGCA+AGG | 0.539634 | 4_3:-52922473 | None:intergenic |
| GCACGTTTGAGGAACCTTGA+AGG | 0.539843 | 4_3:+52922802 | Msa0646960:CDS |
| ATACTTTGGAGTAGCATGCT+TGG | 0.539994 | 4_3:-52922544 | None:intergenic |
| CACCGAACAGTTGGTTGTGG+CGG | 0.541248 | 4_3:+52920257 | Msa0646960:intron |
| TACATATATTTCGCTCTAGT+CGG | 0.544218 | 4_3:-52923372 | None:intergenic |
| TTTCACCGAACAGTTGGTTG+TGG | 0.545622 | 4_3:+52920254 | Msa0646960:intron |
| AACCTTGAAGGCAAAGAACT+AGG | 0.547172 | 4_3:+52922814 | Msa0646960:CDS |
| GGTGTGATGCACTGGGTGAC+GGG | 0.547776 | 4_3:+52922664 | Msa0646960:CDS |
| CTACTGTTCGAAACACCGGC+CGG | 0.551002 | 4_3:+52918752 | Msa0646960:CDS |
| TCAGGCCGCTCCAAAGTTCA+AGG | 0.553933 | 4_3:+52922596 | Msa0646960:CDS |
| AGGAAAGCTTTCTAAAGTTG+AGG | 0.554316 | 4_3:+52918802 | Msa0646960:CDS |
| TAGAATGTTGCGGCGTGAAA+AGG | 0.554884 | 4_3:-52918199 | None:intergenic |
| AGGTGTGATGCACTGGGTGA+CGG | 0.555737 | 4_3:+52922663 | Msa0646960:CDS |
| GGTGCTCGCCTCATTGCCCA+CGG | 0.556545 | 4_3:+52922435 | Msa0646960:CDS |
| ATAAACCTTGCAAAGCAGCC+TGG | 0.557523 | 4_3:+52922468 | Msa0646960:CDS |
| AAGGATAGAAAGAAAGGAGC+CGG | 0.559519 | 4_3:+52922886 | Msa0646960:CDS |
| AGAATCTGCACGGTACTACC+AGG | 0.563552 | 4_3:-52922486 | None:intergenic |
| AGATGATGATGATAATTCGT+TGG | 0.563641 | 4_3:+52920952 | Msa0646960:CDS |
| GTGTTGCTGAGTCAAAGCTT+GGG | 0.564280 | 4_3:+52919591 | Msa0646960:CDS |
| GGAGGTTGAAGATGTTGTTG+AGG | 0.564937 | 4_3:+52923160 | Msa0646960:CDS |
| AATGGGGACCATACTTCGAA+TGG | 0.572576 | 4_3:+52923254 | Msa0646960:CDS |
| TCTATGATTATCTCAAGAGT+AGG | 0.573998 | 4_3:+52922364 | Msa0646960:CDS |
| CAATTGAATGAACTCATAGC+AGG | 0.584388 | 4_3:+52919777 | Msa0646960:CDS |
| ACCAAAGTCTAATTCTGCAA+TGG | 0.590650 | 4_3:+52923040 | Msa0646960:CDS |
| GCTATCAGGTGTGATGCACT+GGG | 0.592574 | 4_3:+52922657 | Msa0646960:CDS |
| AGGAGACCATCAAAACCAGA+AGG | 0.592727 | 4_3:+52920297 | Msa0646960:CDS |
| GAATACTTCCGAAGCTCTAG+AGG | 0.594176 | 4_3:+52919487 | Msa0646960:CDS |
| TGGTAAATGAGACCATACTT+TGG | 0.597333 | 4_3:-52922558 | None:intergenic |
| TGTTGTTGAGGAACCAGAAG+AGG | 0.598846 | 4_3:+52923172 | Msa0646960:CDS |
| ATGAGGGTTCGTGAATGGTA+TGG | 0.601117 | 4_3:+52921857 | Msa0646960:CDS |
| AGCTTCCTCCGTGGGCAATG+AGG | 0.601658 | 4_3:-52922443 | None:intergenic |
| CAGGCCGCTCCAAAGTTCAA+GGG | 0.602064 | 4_3:+52922597 | Msa0646960:CDS |
| ATACCATTCACGAACCCTCA+TGG | 0.603195 | 4_3:-52921855 | None:intergenic |
| GGAATCTACTGAAAAGGCAG+AGG | 0.607137 | 4_3:+52923226 | Msa0646960:CDS |
| GCTGAAGTTTAGCGCTGACA+AGG | 0.610350 | 4_3:+52919863 | Msa0646960:CDS |
| TGATGATGATAATTCGTTGG+AGG | 0.613690 | 4_3:+52920955 | Msa0646960:CDS |
| GCTTCTACTGTTCGAAACAC+CGG | 0.613750 | 4_3:+52918748 | Msa0646960:CDS |
| TACAGTCTACAACTCAGAGA+AGG | 0.614557 | 4_3:-52918099 | None:intergenic |
| GGGATTGGAAAACAGAGCTA+AGG | 0.614620 | 4_3:+52922701 | Msa0646960:CDS |
| TTGAAAATAGCAAACCCGGC+CGG | 0.617400 | 4_3:-52918767 | None:intergenic |
| GCTGAACACGTATGCCATGA+GGG | 0.618620 | 4_3:+52921841 | Msa0646960:CDS |
| TCCGAATTATTATGGTGAAG+AGG | 0.618731 | 4_3:+52920982 | Msa0646960:CDS |
| CCTGACCAATCAAGGATGCA+TGG | 0.619510 | 4_3:-52922578 | None:intergenic |
| AGGACTGATAACTCCAGCTA+AGG | 0.620619 | 4_3:+52922909 | Msa0646960:CDS |
| TTAAGTTGAGTAGAATGTTG+CGG | 0.622302 | 4_3:-52918209 | None:intergenic |
| TATTAGGGCAGAACGAGCAA+AGG | 0.625543 | 4_3:+52920844 | Msa0646960:CDS |
| GCAAGGTCTGTCAAGTTGAT+GGG | 0.626398 | 4_3:+52921929 | Msa0646960:CDS |
| CAGGTACAAATTCGAATTTG+GGG | 0.627757 | 4_3:-52918167 | None:intergenic |
| CTCGGCACCAAGAATCTGCA+CGG | 0.631244 | 4_3:-52922496 | None:intergenic |
| GCAAAAGTGGATCTGAGATG+GGG | 0.632665 | 4_3:-52923638 | None:intergenic |
| AGGTCTAGCTGTTCAAGACA+TGG | 0.637643 | 4_3:+52919797 | Msa0646960:CDS |
| GACGGGCAAGATAACACCAT+GGG | 0.638389 | 4_3:+52922681 | Msa0646960:CDS |
| AGGCCGCTCCAAAGTTCAAG+GGG | 0.639325 | 4_3:+52922598 | Msa0646960:CDS |
| AATGTTGCGGCGTGAAAAGG+TGG | 0.639712 | 4_3:-52918196 | None:intergenic |
| TTGACAACATCCAATATGCA+AGG | 0.639726 | 4_3:+52921912 | Msa0646960:CDS |
| TTTCCCCTTGAACTTTGGAG+CGG | 0.639830 | 4_3:-52922601 | None:intergenic |
| CAAGATCGAAGCATATGACA+AGG | 0.641584 | 4_3:+52922867 | Msa0646960:CDS |
| GGTTTATTAAGCTTCCTCCG+TGG | 0.644646 | 4_3:-52922452 | None:intergenic |
| AGCTGAACACGTATGCCATG+AGG | 0.646581 | 4_3:+52921840 | Msa0646960:CDS |
| CTTTCTAGCAGCATCTGCAG+TGG | 0.650736 | 4_3:-52919263 | None:intergenic |
| GGGGACCATACTTCGAATGG+AGG | 0.650803 | 4_3:+52923257 | Msa0646960:CDS |
| ATTGATGGCAAAGCTAGCAA+GGG | 0.654528 | 4_3:+52919524 | Msa0646960:CDS |
| GGGTTCGTGAATGGTATGGT+TGG | 0.660131 | 4_3:+52921861 | Msa0646960:CDS |
| AGTCTACAACTCAGAGAAGG+AGG | 0.664335 | 4_3:-52918096 | None:intergenic |
| AAAGGCAGAGGTGCAGAATG+GGG | 0.668436 | 4_3:+52923238 | Msa0646960:CDS |
| GATAGAAAGAAAGGAGCCGG+AGG | 0.682277 | 4_3:+52922889 | Msa0646960:CDS |
| TGCAAAGCTTGATTTCTCTG+AGG | 0.684043 | 4_3:+52921967 | Msa0646960:CDS |
| AGACAAACCCAAGCTCATAG+GGG | 0.697188 | 4_3:-52919820 | None:intergenic |
| GCTCGCCTCATTGCCCACGG+AGG | 0.703906 | 4_3:+52922438 | Msa0646960:CDS |
| CTTTAGCAGAACCGGCAAAG+CGG | 0.708275 | 4_3:-52922837 | None:intergenic |
| TGACGGGCAAGATAACACCA+TGG | 0.727962 | 4_3:+52922680 | Msa0646960:CDS |
| GCTGTTATGGAGTTGATGAG+AGG | 0.738756 | 4_3:+52919744 | Msa0646960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATGAACTGTTTTTAAT+GGG | - | chr4_3:52918042-52918061 | None:intergenic | 15.0% |
| !!! | AAAATATGAACTGTTTTTAA+TGG | - | chr4_3:52918043-52918062 | None:intergenic | 15.0% |
| !!! | TTTTCAGGTTTATTTATTTA+AGG | + | chr4_3:52918716-52918735 | Msa0646960:intron | 15.0% |
| !! | TTGAAATGAAAAGAAAAAAA+TGG | - | chr4_3:52919082-52919101 | None:intergenic | 15.0% |
| !!! | TTTTCAAATTCAAAATGTAT+AGG | + | chr4_3:52919108-52919127 | Msa0646960:intron | 15.0% |
| !!! | ATTTTGTTTAAGAATAACTT+AGG | - | chr4_3:52919646-52919665 | None:intergenic | 15.0% |
| !!! | TCAAATAGCTAATTTTTTAT+CGG | + | chr4_3:52919686-52919705 | Msa0646960:intron | 15.0% |
| !!! | ATTTTTATCATTTTTTAACC+TGG | + | chr4_3:52920401-52920420 | Msa0646960:intron | 15.0% |
| !! | ATTACACATAATTAAAAAGT+TGG | - | chr4_3:52920512-52920531 | None:intergenic | 15.0% |
| !!! | TTTTTAATTATGTGTAATAG+CGG | + | chr4_3:52920514-52920533 | Msa0646960:intron | 15.0% |
| !!! | TTGGTTTTAAAAAAAAACAA+GGG | + | chr4_3:52920707-52920726 | Msa0646960:intron | 15.0% |
| !!! | TTTGAATTTTGATATTATGT+TGG | + | chr4_3:52921122-52921141 | Msa0646960:intron | 15.0% |
| !!! | ATCATAAAAACAGTTTTATT+CGG | + | chr4_3:52921450-52921469 | Msa0646960:intron | 15.0% |
| !!! | TATCTATATCTATTTGTTAT+TGG | - | chr4_3:52922051-52922070 | None:intergenic | 15.0% |
| !!! | ATGAATCCTTATTTATTTAA+TGG | + | chr4_3:52923504-52923523 | Msa0646960:three_prime_UTR | 15.0% |
| !!! | TGAATCCTTATTTATTTAAT+GGG | + | chr4_3:52923505-52923524 | Msa0646960:three_prime_UTR | 15.0% |
| !! | TAATTAATTATGTTTGTGAA+TGG | + | chr4_3:52923580-52923599 | Msa0646960:three_prime_UTR | 15.0% |
| !! | AGAAACCTAAAAAACTAAAT+TGG | - | chr4_3:52918324-52918343 | None:intergenic | 20.0% |
| !!! | TTTTTTATAGTTTATGGGTT+TGG | + | chr4_3:52918410-52918429 | Msa0646960:intron | 20.0% |
| !!! | TATATCATTTTGTTCATCAT+CGG | - | chr4_3:52918458-52918477 | None:intergenic | 20.0% |
| !!! | TTTTATTGCTTTGTTTTTTC+AGG | + | chr4_3:52918701-52918720 | Msa0646960:intron | 20.0% |
| !! | TGGTAAAATATAAATTGGTT+AGG | - | chr4_3:52919210-52919229 | None:intergenic | 20.0% |
| !!! | GAAGTTGGTAAAATATAAAT+TGG | - | chr4_3:52919215-52919234 | None:intergenic | 20.0% |
| !! | TTAACTAAAAATCAACTGTT+TGG | + | chr4_3:52920106-52920125 | Msa0646960:intron | 20.0% |
| !! | TTAACTAAAAATCAACTGTT+TGG | + | chr4_3:52920106-52920125 | Msa0646960:intron | 20.0% |
| !! | AACTCTATAAATATATATCC+AGG | - | chr4_3:52920422-52920441 | None:intergenic | 20.0% |
| !!! | CTTGTTTTTTTTTAAAACCA+AGG | - | chr4_3:52920708-52920727 | None:intergenic | 20.0% |
| !!! | CTTGGTTTTAAAAAAAAACA+AGG | + | chr4_3:52920706-52920725 | Msa0646960:intron | 20.0% |
| !!! | AATTATCAGTTCTTTTCTTT+AGG | + | chr4_3:52921070-52921089 | Msa0646960:intron | 20.0% |
| !!! | GGATTTAATGTTTTGAATTT+TGG | + | chr4_3:52921091-52921110 | Msa0646960:intron | 20.0% |
| !!! | TTTCGTAATGTTTTGAATTT+TGG | + | chr4_3:52921157-52921176 | Msa0646960:intron | 20.0% |
| !! | TAAAACCTTTCATAAGATTT+AGG | + | chr4_3:52921207-52921226 | Msa0646960:intron | 20.0% |
| !!! | TCATAAAAACAGTTTTATTC+GGG | + | chr4_3:52921451-52921470 | Msa0646960:intron | 20.0% |
| !! | AATTGTAAGTCTCAATATTT+CGG | - | chr4_3:52921550-52921569 | None:intergenic | 20.0% |
| !! | AAACAAAATCACAACAAAAT+TGG | - | chr4_3:52921662-52921681 | None:intergenic | 20.0% |
| !!! | ACTTTATGATGCTTTTTATT+AGG | + | chr4_3:52921766-52921785 | Msa0646960:intron | 20.0% |
| !! | TATGCAATGAGTAAATTAAT+TGG | - | chr4_3:52922021-52922040 | None:intergenic | 20.0% |
| !!! | CAAAATCTGAAATTTATTTC+AGG | - | chr4_3:52922211-52922230 | None:intergenic | 20.0% |
| !!! | GGTGTTATTTAATTTTCTAT+TGG | + | chr4_3:52922951-52922970 | Msa0646960:intron | 20.0% |
| !! | AAAGAAAGAAAAGAAGAAAA+AGG | + | chr4_3:52923124-52923143 | Msa0646960:CDS | 20.0% |
| !!! | TTTTTATCTTTCTTTTTGCT+TGG | - | chr4_3:52923341-52923360 | None:intergenic | 20.0% |
| !! | CTTATCCCATTAAATAAATA+AGG | - | chr4_3:52923513-52923532 | None:intergenic | 20.0% |
| !!! | TCGTTCCAATTTAGTTTTTT+AGG | + | chr4_3:52918316-52918335 | Msa0646960:intron | 25.0% |
| ! | TATCGAAAAATGTTCGATTT+AGG | - | chr4_3:52918352-52918371 | None:intergenic | 25.0% |
| !!! | CTGTATGATCTCTAAAATAT+AGG | + | chr4_3:52918958-52918977 | Msa0646960:intron | 25.0% |
| !! | TTTTACCAACTTCTTTATAC+AGG | + | chr4_3:52919222-52919241 | Msa0646960:intron | 25.0% |
| ! | TAAATCCTGTATAAAGAAGT+TGG | - | chr4_3:52919230-52919249 | None:intergenic | 25.0% |
| ! | GAGTATCATTAAGGATAAAT+TGG | + | chr4_3:52919613-52919632 | Msa0646960:CDS | 25.0% |
| ! | TCATGCAATCTTAAGAATAA+AGG | - | chr4_3:52920048-52920067 | None:intergenic | 25.0% |
| ! | TGCATTATTTCACTTTGATA+AGG | - | chr4_3:52920331-52920350 | None:intergenic | 25.0% |
| ! | TTTCACGTAAAATGAAATAG+CGG | - | chr4_3:52920673-52920692 | None:intergenic | 25.0% |
| !! | TCATTTTCATGAAGTTGTTA+GGG | - | chr4_3:52920755-52920774 | None:intergenic | 25.0% |
| !! | ATCATTTTCATGAAGTTGTT+AGG | - | chr4_3:52920756-52920775 | None:intergenic | 25.0% |
| ! | ATGAAAATGATGATCTAACT+TGG | + | chr4_3:52920765-52920784 | Msa0646960:intron | 25.0% |
| ! | TGAAAATGATGATCTAACTT+GGG | + | chr4_3:52920766-52920785 | Msa0646960:intron | 25.0% |
| ! | TCCTAAAAGTTATGAAATAG+CGG | + | chr4_3:52921342-52921361 | Msa0646960:intron | 25.0% |
| !!! | TTGTTGTGATTTTGTTTGTA+TGG | + | chr4_3:52921665-52921684 | Msa0646960:intron | 25.0% |
| !!! | ATAAAAAGCATCATAAAGTC+AGG | - | chr4_3:52921765-52921784 | None:intergenic | 25.0% |
| !!! | TTATGATGCTTTTTATTAGG+TGG | + | chr4_3:52921769-52921788 | Msa0646960:intron | 25.0% |
| !! | TAAATTTCAGATTTTGTCAG+AGG | + | chr4_3:52922215-52922234 | Msa0646960:intron | 25.0% |
| !! | GGTATATTATTAGCTTCATT+TGG | + | chr4_3:52922930-52922949 | Msa0646960:intron | 25.0% |
| ! | GAAAGTAAAGAAAGAAAAGA+AGG | + | chr4_3:52923100-52923119 | Msa0646960:CDS | 25.0% |
| ! | AAAGAAGAAAAAGGAGAAAA+AGG | + | chr4_3:52923133-52923152 | Msa0646960:CDS | 25.0% |
| ! | GAAAGAAAAGAAGAAAAAGA+AGG | + | chr4_3:52923205-52923224 | Msa0646960:CDS | 25.0% |
| ! | TATGTATCAGCTAATCAATA+TGG | + | chr4_3:52923389-52923408 | Msa0646960:three_prime_UTR | 25.0% |
| !!! | TAACCATTTTTGTATACTTC+TGG | + | chr4_3:52923419-52923438 | Msa0646960:intron | 25.0% |
| ! | TTCATGTTAATGCAATTTGT+AGG | + | chr4_3:52923478-52923497 | Msa0646960:three_prime_UTR | 25.0% |
| ! | TTATGTTTGTGAATGGAAAT+AGG | + | chr4_3:52923587-52923606 | Msa0646960:three_prime_UTR | 25.0% |
| ! | ACTAAATAGAACAAAGCATA+TGG | - | chr4_3:52923618-52923637 | None:intergenic | 25.0% |
| TTAAACCCTAAATTAGGGTT+TGG | - | chr4_3:52918131-52918150 | None:intergenic | 30.0% | |
| GAAGCTTAAACCCTAAATTA+GGG | - | chr4_3:52918136-52918155 | None:intergenic | 30.0% | |
| TGAAGCTTAAACCCTAAATT+AGG | - | chr4_3:52918137-52918156 | None:intergenic | 30.0% | |
| ! | AAATTCGAATTTGGGGATTT+TGG | - | chr4_3:52918163-52918182 | None:intergenic | 30.0% |
| TCAGGTACAAATTCGAATTT+GGG | - | chr4_3:52918171-52918190 | None:intergenic | 30.0% | |
| ATCAGGTACAAATTCGAATT+TGG | - | chr4_3:52918172-52918191 | None:intergenic | 30.0% | |
| !! | TTAAGTTGAGTAGAATGTTG+CGG | - | chr4_3:52918212-52918231 | None:intergenic | 30.0% |
| !! | TTTCGATACTGATTTGTTAG+AGG | + | chr4_3:52918364-52918383 | Msa0646960:intron | 30.0% |
| !! | TTCGATACTGATTTGTTAGA+GGG | + | chr4_3:52918365-52918384 | Msa0646960:intron | 30.0% |
| !! | ATTTTCAAAGTGCTTGATGA+AGG | + | chr4_3:52918782-52918801 | Msa0646960:CDS | 30.0% |
| CACTGTATTTATACTGTCTT+CGG | + | chr4_3:52919184-52919203 | Msa0646960:intron | 30.0% | |
| ACATGAAATTGAGAGGATAA+GGG | - | chr4_3:52919313-52919332 | None:intergenic | 30.0% | |
| AACATGAAATTGAGAGGATA+AGG | - | chr4_3:52919314-52919333 | None:intergenic | 30.0% | |
| TTCTCTCAGCAATATGATAA+TGG | + | chr4_3:52919337-52919356 | Msa0646960:intron | 30.0% | |
| ACACTAAGTGATGCAAAATT+AGG | + | chr4_3:52919433-52919452 | Msa0646960:intron | 30.0% | |
| CATTGTGAAAATGAAACGTT+AGG | + | chr4_3:52919569-52919588 | Msa0646960:CDS | 30.0% | |
| AAAGAAGTTAGGCACAAATA+TGG | + | chr4_3:52919982-52920001 | Msa0646960:intron | 30.0% | |
| GTAATTGTGAGAGAACAAAT+AGG | + | chr4_3:52920181-52920200 | Msa0646960:intron | 30.0% | |
| ! | TATATTTTTCACCGAACAGT+TGG | + | chr4_3:52920248-52920267 | Msa0646960:intron | 30.0% |
| AAAGTGAAATAATGCAGTGA+GGG | + | chr4_3:52920335-52920354 | Msa0646960:intron | 30.0% | |
| TGAAAATACAAGATTCTCCT+TGG | + | chr4_3:52920688-52920707 | Msa0646960:intron | 30.0% | |
| ! | GTATTTGTTGAAGATGTTGT+AGG | + | chr4_3:52920914-52920933 | Msa0646960:CDS | 30.0% |
| ! | AGATGATGATGATAATTCGT+TGG | + | chr4_3:52920952-52920971 | Msa0646960:CDS | 30.0% |
| TCCTCTTCACCATAATAATT+CGG | - | chr4_3:52920986-52921005 | None:intergenic | 30.0% | |
| TTTCCAATGCTATGTAATGT+TGG | + | chr4_3:52921047-52921066 | Msa0646960:intron | 30.0% | |
| ATTCCAACATTACATAGCAT+TGG | - | chr4_3:52921053-52921072 | None:intergenic | 30.0% | |
| !! | CGTAATGTTTTGAATTTTGG+TGG | + | chr4_3:52921160-52921179 | Msa0646960:intron | 30.0% |
| AACCTTTCATAAGATTTAGG+TGG | + | chr4_3:52921210-52921229 | Msa0646960:intron | 30.0% | |
| AACCACCTAAATCTTATGAA+AGG | - | chr4_3:52921215-52921234 | None:intergenic | 30.0% | |
| !! | ACCGCTATTTCATAACTTTT+AGG | - | chr4_3:52921346-52921365 | None:intergenic | 30.0% |
| CACATCATAGTAGTTAATAG+CGG | - | chr4_3:52921429-52921448 | None:intergenic | 30.0% | |
| TATTTCGGTTACCATTTACT+CGG | - | chr4_3:52921535-52921554 | None:intergenic | 30.0% | |
| CTTACAATTCAATGTTCTTG+AGG | + | chr4_3:52921561-52921580 | Msa0646960:intron | 30.0% | |
| CTGAATCTTTCAACATTTCT+AGG | + | chr4_3:52921590-52921609 | Msa0646960:intron | 30.0% | |
| TTTCTAGGCAAATATGCATA+TGG | + | chr4_3:52921605-52921624 | Msa0646960:intron | 30.0% | |
| !! | TTGTGATTTTGTTTGTATGG+TGG | + | chr4_3:52921668-52921687 | Msa0646960:intron | 30.0% |
| !! | ACTATGATTTTGGTAAGTTC+TGG | - | chr4_3:52921893-52921912 | None:intergenic | 30.0% |
| ! | GATGTTGTCAACTATGATTT+TGG | - | chr4_3:52921903-52921922 | None:intergenic | 30.0% |
| ATATCAATGGGAACTGAAAT+TGG | + | chr4_3:52922270-52922289 | Msa0646960:CDS | 30.0% | |
| TCTATGATTATCTCAAGAGT+AGG | + | chr4_3:52922364-52922383 | Msa0646960:CDS | 30.0% | |
| TATGACAAGGATAGAAAGAA+AGG | + | chr4_3:52922880-52922899 | Msa0646960:CDS | 30.0% | |
| AGCTAATAATATACCTTAGC+TGG | - | chr4_3:52922925-52922944 | None:intergenic | 30.0% | |
| ! | ACTTTCTTTTTGTCAGTAAC+AGG | - | chr4_3:52923086-52923105 | None:intergenic | 30.0% |
| AAAGAAGGAATCTACTGAAA+AGG | + | chr4_3:52923220-52923239 | Msa0646960:CDS | 30.0% | |
| ! | TTATCTTTCTTTTTGCTTGG+CGG | - | chr4_3:52923338-52923357 | None:intergenic | 30.0% |
| TACATATATTTCGCTCTAGT+CGG | - | chr4_3:52923375-52923394 | None:intergenic | 30.0% | |
| !!! | CAGTCATTTTTTTGCAAAAG+TGG | - | chr4_3:52923654-52923673 | None:intergenic | 30.0% |
| ! | CACTTTTGCAAAAAAATGAC+TGG | + | chr4_3:52923652-52923671 | Msa0646960:three_prime_UTR | 30.0% |
| TCTTCACCAAACCCTAATTT+AGG | + | chr4_3:52918122-52918141 | Msa0646960:five_prime_UTR | 35.0% | |
| CTTCACCAAACCCTAATTTA+GGG | + | chr4_3:52918123-52918142 | Msa0646960:five_prime_UTR | 35.0% | |
| CAGGTACAAATTCGAATTTG+GGG | - | chr4_3:52918170-52918189 | None:intergenic | 35.0% | |
| GCAACATTCTACTCAACTTA+AGG | + | chr4_3:52918211-52918230 | Msa0646960:five_prime_UTR | 35.0% | |
| CAGCACAAGAGATAGTAAAT+AGG | - | chr4_3:52918274-52918293 | None:intergenic | 35.0% | |
| TCTGTGCGGAAGAAAATTAT+TGG | + | chr4_3:52918500-52918519 | Msa0646960:intron | 35.0% | |
| !!! | TTGGCAAAGTCAACGTTTTT+TGG | + | chr4_3:52918589-52918608 | Msa0646960:intron | 35.0% |
| !!! | TTTTGGTGTTTGCTTGTAAC+TGG | + | chr4_3:52918606-52918625 | Msa0646960:intron | 35.0% |
| !! | TTTGGTGTTTGCTTGTAACT+GGG | + | chr4_3:52918607-52918626 | Msa0646960:intron | 35.0% |
| ! | CACTTTGAAAATAGCAAACC+CGG | - | chr4_3:52918774-52918793 | None:intergenic | 35.0% |
| !! | AGGAAAGCTTTCTAAAGTTG+AGG | + | chr4_3:52918802-52918821 | Msa0646960:CDS | 35.0% |
| CTTAGTGGTATTAAAGACAG+TGG | - | chr4_3:52919020-52919039 | None:intergenic | 35.0% | |
| CACTGTCTTTAATACCACTA+AGG | + | chr4_3:52919018-52919037 | Msa0646960:intron | 35.0% | |
| TAGATTCTACACTTCCTTAG+TGG | - | chr4_3:52919035-52919054 | None:intergenic | 35.0% | |
| ATGTATAGGAGTTCACAATC+CGG | + | chr4_3:52919122-52919141 | Msa0646960:intron | 35.0% | |
| CGAAGACAGTATAAATACAG+TGG | - | chr4_3:52919186-52919205 | None:intergenic | 35.0% | |
| GAAGCAAACATGAAATTGAG+AGG | - | chr4_3:52919320-52919339 | None:intergenic | 35.0% | |
| CTAAGTGATGCAAAATTAGG+TGG | + | chr4_3:52919436-52919455 | Msa0646960:intron | 35.0% | |
| !! | AAAGCTTGGGAGTATCATTA+AGG | + | chr4_3:52919604-52919623 | Msa0646960:CDS | 35.0% |
| TGTTCACAACAATGCTGTTA+TGG | + | chr4_3:52919731-52919750 | Msa0646960:CDS | 35.0% | |
| CAATTGAATGAACTCATAGC+AGG | + | chr4_3:52919777-52919796 | Msa0646960:CDS | 35.0% | |
| ATGACTAGCAAAGGAGAATA+CGG | - | chr4_3:52919961-52919980 | None:intergenic | 35.0% | |
| ! | ACTTCTTTGATGACTAGCAA+AGG | - | chr4_3:52919970-52919989 | None:intergenic | 35.0% |
| TGCTAGTCATCAAAGAAGTT+AGG | + | chr4_3:52919971-52919990 | Msa0646960:intron | 35.0% | |
| !!! | TCAAAACCTTCTGGTTTTGA+TGG | - | chr4_3:52920306-52920325 | None:intergenic | 35.0% |
| CAAAGTGAAATAATGCAGTG+AGG | + | chr4_3:52920334-52920353 | Msa0646960:intron | 35.0% | |
| AAAAGTTGGACCTAACACTA+CGG | - | chr4_3:52920498-52920517 | None:intergenic | 35.0% | |
| ! | TGATGATGATAATTCGTTGG+AGG | + | chr4_3:52920955-52920974 | Msa0646960:CDS | 35.0% |
| GAGGATGATCCGAATTATTA+TGG | + | chr4_3:52920974-52920993 | Msa0646960:CDS | 35.0% | |
| TCCGAATTATTATGGTGAAG+AGG | + | chr4_3:52920982-52921001 | Msa0646960:CDS | 35.0% | |
| ! | TATCCCGCTATAGCATTTTT+GGG | + | chr4_3:52921381-52921400 | Msa0646960:intron | 35.0% |
| !! | TAGTAGTTAATAGCGGATAG+CGG | - | chr4_3:52921422-52921441 | None:intergenic | 35.0% |
| GACCTTTACTAACGTTCTAA+TGG | + | chr4_3:52921473-52921492 | Msa0646960:intron | 35.0% | |
| CACCATTAGAACGTTAGTAA+AGG | - | chr4_3:52921478-52921497 | None:intergenic | 35.0% | |
| CTTTACTAACGTTCTAATGG+TGG | + | chr4_3:52921476-52921495 | Msa0646960:intron | 35.0% | |
| ATTTCGGTTACCATTTACTC+GGG | - | chr4_3:52921534-52921553 | None:intergenic | 35.0% | |
| !!! | AACTTTTTTCTTCAGCTAGC+TGG | + | chr4_3:52921715-52921734 | Msa0646960:intron | 35.0% |
| TTGACAACATCCAATATGCA+AGG | + | chr4_3:52921912-52921931 | Msa0646960:CDS | 35.0% | |
| TGAGTAAATTAATTGGCAGC+AGG | - | chr4_3:52922014-52922033 | None:intergenic | 35.0% | |
| ! | ATTTCAGATTTTGTCAGAGG+AGG | + | chr4_3:52922218-52922237 | Msa0646960:intron | 35.0% |
| GAAGCTTCAGTGATATCAAT+GGG | + | chr4_3:52922258-52922277 | Msa0646960:CDS | 35.0% | |
| !! | TGCTCTAAAAAGAGCTTTCT+CGG | - | chr4_3:52922517-52922536 | None:intergenic | 35.0% |
| TGGTAAATGAGACCATACTT+TGG | - | chr4_3:52922561-52922580 | None:intergenic | 35.0% | |
| ATTTACCATGCATCCTTGAT+TGG | + | chr4_3:52922573-52922592 | Msa0646960:CDS | 35.0% | |
| ! | GAAATTTTCCCCTTGAACTT+TGG | - | chr4_3:52922609-52922628 | None:intergenic | 35.0% |
| AGTTCAAGGGGAAAATTTCT+CGG | + | chr4_3:52922610-52922629 | Msa0646960:CDS | 35.0% | |
| TTGTCATATGCTTCGATCTT+GGG | - | chr4_3:52922868-52922887 | None:intergenic | 35.0% | |
| ACCAAAGTCTAATTCTGCAA+TGG | + | chr4_3:52923040-52923059 | Msa0646960:CDS | 35.0% | |
| TCCATTGCAGAATTAGACTT+TGG | - | chr4_3:52923044-52923063 | None:intergenic | 35.0% | |
| ! | TTCTTTTTGTCAGTAACAGG+AGG | - | chr4_3:52923083-52923102 | None:intergenic | 35.0% |
| GAAAAAGGAGAAAAAGGAAG+AGG | + | chr4_3:52923139-52923158 | Msa0646960:CDS | 35.0% | |
| TTCTTAACAACTTCCTCTTC+TGG | - | chr4_3:52923188-52923207 | None:intergenic | 35.0% | |
| GAGGAGAAAAGAAGAAAAAG+AGG | + | chr4_3:52923276-52923295 | Msa0646960:CDS | 35.0% | |
| ! | GCTCCAGAAGTATACAAAAA+TGG | - | chr4_3:52923425-52923444 | None:intergenic | 35.0% |
| !! | TTTGTTTTTCCTGACTTCAG+TGG | + | chr4_3:52923534-52923553 | Msa0646960:three_prime_UTR | 35.0% |
| ACATATTATCCACTGAAGTC+AGG | - | chr4_3:52923546-52923565 | None:intergenic | 35.0% | |
| TGACTTCAGTGGATAATATG+TGG | + | chr4_3:52923545-52923564 | Msa0646960:three_prime_UTR | 35.0% | |
| TACAGTCTACAACTCAGAGA+AGG | - | chr4_3:52918102-52918121 | None:intergenic | 40.0% | |
| !! | TCTTCTGAGATGTTTCTGTG+CGG | + | chr4_3:52918486-52918505 | Msa0646960:intron | 40.0% |
| ATTATTGGAGACCTGAACTG+AGG | + | chr4_3:52918515-52918534 | Msa0646960:intron | 40.0% | |
| ! | ATTCCGATGTGTCTGTTTTC+TGG | + | chr4_3:52918563-52918582 | Msa0646960:intron | 40.0% |
| ! | TTCCGATGTGTCTGTTTTCT+GGG | + | chr4_3:52918564-52918583 | Msa0646960:intron | 40.0% |
| CAGTACATAACGCAATTCAC+CGG | - | chr4_3:52919144-52919163 | None:intergenic | 40.0% | |
| ! | AATTGAGAGGATAAGGGTGT+GGG | - | chr4_3:52919307-52919326 | None:intergenic | 40.0% |
| AAATTGAGAGGATAAGGGTG+TGG | - | chr4_3:52919308-52919327 | None:intergenic | 40.0% | |
| ! | GCAGCTACTTTGCTAATTGA+TGG | + | chr4_3:52919509-52919528 | Msa0646960:CDS | 40.0% |
| ! | AATTGATGGCAAAGCTAGCA+AGG | + | chr4_3:52919523-52919542 | Msa0646960:CDS | 40.0% |
| ! | ATTGATGGCAAAGCTAGCAA+GGG | + | chr4_3:52919524-52919543 | Msa0646960:CDS | 40.0% |
| GCTAAACTTCAGCTTGTATC+TGG | - | chr4_3:52919856-52919875 | None:intergenic | 40.0% | |
| ! | GATAAGGCATCAAAACCTTC+TGG | - | chr4_3:52920315-52920334 | None:intergenic | 40.0% |
| AGTCTTCTTTGTATCACAGC+TGG | - | chr4_3:52920469-52920488 | None:intergenic | 40.0% | |
| AAAGTTGGACCTAACACTAC+GGG | - | chr4_3:52920497-52920516 | None:intergenic | 40.0% | |
| ! | ATCAAGTTGCCAATGCAAGT+GGG | + | chr4_3:52920789-52920808 | Msa0646960:intron | 40.0% |
| ATGAGCCTATTGTGAACACA+AGG | + | chr4_3:52920816-52920835 | Msa0646960:intron | 40.0% | |
| TGAGCCTATTGTGAACACAA+GGG | + | chr4_3:52920817-52920836 | Msa0646960:intron | 40.0% | |
| ! | TGAACACAAGGGCTAGTATT+AGG | + | chr4_3:52920828-52920847 | Msa0646960:intron | 40.0% |
| ! | GAACACAAGGGCTAGTATTA+GGG | + | chr4_3:52920829-52920848 | Msa0646960:intron | 40.0% |
| ! | CTATCCCGCTATAGCATTTT+TGG | + | chr4_3:52921380-52921399 | Msa0646960:intron | 40.0% |
| ! | ATCCCGCTATAGCATTTTTG+GGG | + | chr4_3:52921382-52921401 | Msa0646960:intron | 40.0% |
| CTAACGTTCTAATGGTGGTA+AGG | + | chr4_3:52921481-52921500 | Msa0646960:intron | 40.0% | |
| TTCTAATGTGCCCGAGTAAA+TGG | + | chr4_3:52921521-52921540 | Msa0646960:intron | 40.0% | |
| ACTATGATCGTTCAGGCTAT+TGG | + | chr4_3:52921794-52921813 | Msa0646960:CDS | 40.0% | |
| ACTTGACAGACCTTGCATAT+TGG | - | chr4_3:52921925-52921944 | None:intergenic | 40.0% | |
| TGCAAAGCTTGATTTCTCTG+AGG | + | chr4_3:52921967-52921986 | Msa0646960:CDS | 40.0% | |
| GGAAGCTTCAGTGATATCAA+TGG | + | chr4_3:52922257-52922276 | Msa0646960:CDS | 40.0% | |
| TATTAGAGAGCTCTGTGATC+AGG | + | chr4_3:52922311-52922330 | Msa0646960:CDS | 40.0% | |
| CCAACCATAGCAGTCAAATT+GGG | - | chr4_3:52922405-52922424 | None:intergenic | 40.0% | |
| CCAATTTGACTGCTATGGTT+GGG | + | chr4_3:52922403-52922422 | Msa0646960:CDS | 40.0% | |
| CAATTTGACTGCTATGGTTG+GGG | + | chr4_3:52922404-52922423 | Msa0646960:CDS | 40.0% | |
| GTTTATTAAGCTTCCTCCGT+GGG | - | chr4_3:52922454-52922473 | None:intergenic | 40.0% | |
| !! | ATACTTTGGAGTAGCATGCT+TGG | - | chr4_3:52922547-52922566 | None:intergenic | 40.0% |
| AAGCATGCTACTCCAAAGTA+TGG | + | chr4_3:52922546-52922565 | Msa0646960:CDS | 40.0% | |
| AACCTTGAAGGCAAAGAACT+AGG | + | chr4_3:52922814-52922833 | Msa0646960:CDS | 40.0% | |
| CTTGTCATATGCTTCGATCT+TGG | - | chr4_3:52922869-52922888 | None:intergenic | 40.0% | |
| CAAGATCGAAGCATATGACA+AGG | + | chr4_3:52922867-52922886 | Msa0646960:CDS | 40.0% | |
| AAGGATAGAAAGAAAGGAGC+CGG | + | chr4_3:52922886-52922905 | Msa0646960:CDS | 40.0% | |
| AAAGGAGAAAAAGGAAGAGG+AGG | + | chr4_3:52923142-52923161 | Msa0646960:CDS | 40.0% | |
| TTTCTCCTCCATTCGAAGTA+TGG | - | chr4_3:52923265-52923284 | None:intergenic | 40.0% | |
| GAAGAAAAAGAGGAAGAAGC+AGG | + | chr4_3:52923286-52923305 | Msa0646960:CDS | 40.0% | |
| CAGCTAATCAATATGGTGAC+TGG | + | chr4_3:52923396-52923415 | Msa0646960:intron | 40.0% | |
| ! | TGCAAAAGTGGATCTGAGAT+GGG | - | chr4_3:52923642-52923661 | None:intergenic | 40.0% |
| TTGCAAAAGTGGATCTGAGA+TGG | - | chr4_3:52923643-52923662 | None:intergenic | 40.0% | |
| AGTCTACAACTCAGAGAAGG+AGG | - | chr4_3:52918099-52918118 | None:intergenic | 45.0% | |
| CGTGAAAAGGTGGTTGAATC+AGG | - | chr4_3:52918189-52918208 | None:intergenic | 45.0% | |
| TAGAATGTTGCGGCGTGAAA+AGG | - | chr4_3:52918202-52918221 | None:intergenic | 45.0% | |
| TGAAAGAGTCTCCTCAGTTC+AGG | - | chr4_3:52918529-52918548 | None:intergenic | 45.0% | |
| CACCCAGAAAACAGACACAT+CGG | - | chr4_3:52918569-52918588 | None:intergenic | 45.0% | |
| ! | TGTGTCTGTTTTCTGGGTGT+TGG | + | chr4_3:52918570-52918589 | Msa0646960:intron | 45.0% |
| GCTTCTACTGTTCGAAACAC+CGG | + | chr4_3:52918748-52918767 | Msa0646960:CDS | 45.0% | |
| TTGAAAATAGCAAACCCGGC+CGG | - | chr4_3:52918770-52918789 | None:intergenic | 45.0% | |
| ! | GAATACTTCCGAAGCTCTAG+AGG | + | chr4_3:52919487-52919506 | Msa0646960:CDS | 45.0% |
| ! | GTGTTGCTGAGTCAAAGCTT+GGG | + | chr4_3:52919591-52919610 | Msa0646960:CDS | 45.0% |
| !! | GCTGTTATGGAGTTGATGAG+AGG | + | chr4_3:52919744-52919763 | Msa0646960:CDS | 45.0% |
| AGGTCTAGCTGTTCAAGACA+TGG | + | chr4_3:52919797-52919816 | Msa0646960:CDS | 45.0% | |
| AGACAAACCCAAGCTCATAG+GGG | - | chr4_3:52919823-52919842 | None:intergenic | 45.0% | |
| GAGACAAACCCAAGCTCATA+GGG | - | chr4_3:52919824-52919843 | None:intergenic | 45.0% | |
| TGAGACAAACCCAAGCTCAT+AGG | - | chr4_3:52919825-52919844 | None:intergenic | 45.0% | |
| GTGAGAGAACAAATAGGTGC+TGG | + | chr4_3:52920187-52920206 | Msa0646960:intron | 45.0% | |
| !! | AGAGAACAAATAGGTGCTGG+TGG | + | chr4_3:52920190-52920209 | Msa0646960:intron | 45.0% |
| TTTCACCGAACAGTTGGTTG+TGG | + | chr4_3:52920254-52920273 | Msa0646960:intron | 45.0% | |
| AGGAGACCATCAAAACCAGA+AGG | + | chr4_3:52920297-52920316 | Msa0646960:CDS | 45.0% | |
| GAAATAATGCAGTGAGGGAG+AGG | + | chr4_3:52920340-52920359 | Msa0646960:intron | 45.0% | |
| GACTATATCCCCGTAGTGTT+AGG | + | chr4_3:52920485-52920504 | Msa0646960:intron | 45.0% | |
| AAGTTGGACCTAACACTACG+GGG | - | chr4_3:52920496-52920515 | None:intergenic | 45.0% | |
| TATCTCATAACGCTACGCCA+TGG | - | chr4_3:52920601-52920620 | None:intergenic | 45.0% | |
| AAAACCGCTATGCAGTGTTG+CGG | - | chr4_3:52920639-52920658 | None:intergenic | 45.0% | |
| ! | GATCAAGTTGCCAATGCAAG+TGG | + | chr4_3:52920788-52920807 | Msa0646960:intron | 45.0% |
| ! | TCAAGTTGCCAATGCAAGTG+GGG | + | chr4_3:52920790-52920809 | Msa0646960:intron | 45.0% |
| CTCATTAACCCCACTTGCAT+TGG | - | chr4_3:52920801-52920820 | None:intergenic | 45.0% | |
| CTAGCCCTTGTGTTCACAAT+AGG | - | chr4_3:52920824-52920843 | None:intergenic | 45.0% | |
| TATTAGGGCAGAACGAGCAA+AGG | + | chr4_3:52920844-52920863 | Msa0646960:CDS | 45.0% | |
| GACCCCAAAAATGCTATAGC+GGG | - | chr4_3:52921387-52921406 | None:intergenic | 45.0% | |
| CGACCCCAAAAATGCTATAG+CGG | - | chr4_3:52921388-52921407 | None:intergenic | 45.0% | |
| !!! | CGCTATAGCATTTTTGGGGT+CGG | + | chr4_3:52921386-52921405 | Msa0646960:intron | 45.0% |
| GGTGGATACTATGATCGTTC+AGG | + | chr4_3:52921787-52921806 | Msa0646960:intron | 45.0% | |
| ATACCATTCACGAACCCTCA+TGG | - | chr4_3:52921858-52921877 | None:intergenic | 45.0% | |
| ATGAGGGTTCGTGAATGGTA+TGG | + | chr4_3:52921857-52921876 | Msa0646960:CDS | 45.0% | |
| !! | TGCAAGGTCTGTCAAGTTGA+TGG | + | chr4_3:52921928-52921947 | Msa0646960:CDS | 45.0% |
| !! | GCAAGGTCTGTCAAGTTGAT+GGG | + | chr4_3:52921929-52921948 | Msa0646960:CDS | 45.0% |
| ! | GATTTTGTCAGAGGAGGTTG+AGG | + | chr4_3:52922224-52922243 | Msa0646960:intron | 45.0% |
| TGCACCCAATTTGACTGCTA+TGG | + | chr4_3:52922398-52922417 | Msa0646960:CDS | 45.0% | |
| CCCAATTTGACTGCTATGGT+TGG | + | chr4_3:52922402-52922421 | Msa0646960:CDS | 45.0% | |
| CCCAACCATAGCAGTCAAAT+TGG | - | chr4_3:52922406-52922425 | None:intergenic | 45.0% | |
| GGTTTATTAAGCTTCCTCCG+TGG | - | chr4_3:52922455-52922474 | None:intergenic | 45.0% | |
| ATAAACCTTGCAAAGCAGCC+TGG | + | chr4_3:52922468-52922487 | Msa0646960:CDS | 45.0% | |
| ! | TTTCCCCTTGAACTTTGGAG+CGG | - | chr4_3:52922604-52922623 | None:intergenic | 45.0% |
| ! | ACTTGCTGCAAAGACTGCTT+TGG | + | chr4_3:52922635-52922654 | Msa0646960:CDS | 45.0% |
| CAAAGACTGCTTTGGCTATC+AGG | + | chr4_3:52922643-52922662 | Msa0646960:CDS | 45.0% | |
| GCAAGATAACACCATGGGAT+TGG | + | chr4_3:52922686-52922705 | Msa0646960:CDS | 45.0% | |
| ! | AGCTCTGTTTTCCAATCCCA+TGG | - | chr4_3:52922700-52922719 | None:intergenic | 45.0% |
| GGGATTGGAAAACAGAGCTA+AGG | + | chr4_3:52922701-52922720 | Msa0646960:CDS | 45.0% | |
| AGGACTGATAACTCCAGCTA+AGG | + | chr4_3:52922909-52922928 | Msa0646960:CDS | 45.0% | |
| GGAGGTTGAAGATGTTGTTG+AGG | + | chr4_3:52923160-52923179 | Msa0646960:CDS | 45.0% | |
| TGTTGTTGAGGAACCAGAAG+AGG | + | chr4_3:52923172-52923191 | Msa0646960:CDS | 45.0% | |
| GGAATCTACTGAAAAGGCAG+AGG | + | chr4_3:52923226-52923245 | Msa0646960:CDS | 45.0% | |
| ! | AAAAGGCAGAGGTGCAGAAT+GGG | + | chr4_3:52923237-52923256 | Msa0646960:CDS | 45.0% |
| AATGGGGACCATACTTCGAA+TGG | + | chr4_3:52923254-52923273 | Msa0646960:CDS | 45.0% | |
| ! | GCAAAAGTGGATCTGAGATG+GGG | - | chr4_3:52923641-52923660 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTATAGTTTA+TGG | + | chr4_3:52918404-52918423 | Msa0646960:intron | 5.0% |
| !!! | TTTTTTTTTTTATAGTTTAT+GGG | + | chr4_3:52918405-52918424 | Msa0646960:intron | 5.0% |
| AATGTTGCGGCGTGAAAAGG+TGG | - | chr4_3:52918199-52918218 | None:intergenic | 50.0% | |
| ! | CTTTCTAGCAGCATCTGCAG+TGG | - | chr4_3:52919266-52919285 | None:intergenic | 50.0% |
| CACTGCAGATGCTGCTAGAA+AGG | + | chr4_3:52919264-52919283 | Msa0646960:CDS | 50.0% | |
| !! | AGTAGCTGCCTCTAGAGCTT+CGG | - | chr4_3:52919498-52919517 | None:intergenic | 50.0% |
| !! | GGTGTTGCTGAGTCAAAGCT+TGG | + | chr4_3:52919590-52919609 | Msa0646960:CDS | 50.0% |
| !! | GCTGAAGTTTAGCGCTGACA+AGG | + | chr4_3:52919863-52919882 | Msa0646960:CDS | 50.0% |
| !! | AATAGGTGCTGGTGGAGCTT+TGG | + | chr4_3:52920198-52920217 | Msa0646960:intron | 50.0% |
| ! | CGGTGCAGGAGTATGAGTTT+AGG | + | chr4_3:52920277-52920296 | Msa0646960:CDS | 50.0% |
| TGAGGGAGAGGAGAATAGAG+AGG | + | chr4_3:52920352-52920371 | Msa0646960:intron | 50.0% | |
| GAGGGAGAGGAGAATAGAGA+GGG | + | chr4_3:52920353-52920372 | Msa0646960:intron | 50.0% | |
| GTGTAATAGCGGCGCTATAG+CGG | + | chr4_3:52920525-52920544 | Msa0646960:intron | 50.0% | |
| TGGCTTATTGCATAGCGGTC+CGG | - | chr4_3:52920581-52920600 | None:intergenic | 50.0% | |
| GACCGCTATGCAATAAGCCA+TGG | + | chr4_3:52920581-52920600 | Msa0646960:intron | 50.0% | |
| CGCCATGGCTTATTGCATAG+CGG | - | chr4_3:52920586-52920605 | None:intergenic | 50.0% | |
| GGCGTAGCGTTATGAGATAG+CGG | + | chr4_3:52920602-52920621 | Msa0646960:intron | 50.0% | |
| ! | ATGAGATAGCGGCGCAATAG+CGG | + | chr4_3:52920613-52920632 | Msa0646960:intron | 50.0% |
| GAAATAGCGGTCATAGCGCT+AGG | + | chr4_3:52921355-52921374 | Msa0646960:intron | 50.0% | |
| AGCTGAACACGTATGCCATG+AGG | + | chr4_3:52921840-52921859 | Msa0646960:CDS | 50.0% | |
| GCTGAACACGTATGCCATGA+GGG | + | chr4_3:52921841-52921860 | Msa0646960:CDS | 50.0% | |
| ATGCCATGAGGGTTCGTGAA+TGG | + | chr4_3:52921852-52921871 | Msa0646960:CDS | 50.0% | |
| GGGTTCGTGAATGGTATGGT+TGG | + | chr4_3:52921861-52921880 | Msa0646960:CDS | 50.0% | |
| ! | TACTACCAGGCTGCTTTGCA+AGG | - | chr4_3:52922476-52922495 | None:intergenic | 50.0% |
| AGAATCTGCACGGTACTACC+AGG | - | chr4_3:52922489-52922508 | None:intergenic | 50.0% | |
| GGTAGTACCGTGCAGATTCT+TGG | + | chr4_3:52922489-52922508 | Msa0646960:CDS | 50.0% | |
| CCTGACCAATCAAGGATGCA+TGG | - | chr4_3:52922581-52922600 | None:intergenic | 50.0% | |
| ! | CCATGCATCCTTGATTGGTC+AGG | + | chr4_3:52922578-52922597 | Msa0646960:CDS | 50.0% |
| GCTATCAGGTGTGATGCACT+GGG | + | chr4_3:52922657-52922676 | Msa0646960:CDS | 50.0% | |
| ! | TGACGGGCAAGATAACACCA+TGG | + | chr4_3:52922680-52922699 | Msa0646960:CDS | 50.0% |
| GACGGGCAAGATAACACCAT+GGG | + | chr4_3:52922681-52922700 | Msa0646960:CDS | 50.0% | |
| TGCAGCTTGAAGCACGTTTG+AGG | + | chr4_3:52922791-52922810 | Msa0646960:intron | 50.0% | |
| GCACGTTTGAGGAACCTTGA+AGG | + | chr4_3:52922802-52922821 | Msa0646960:CDS | 50.0% | |
| ! | GGCCTAGTTCTTTGCCTTCA+AGG | - | chr4_3:52922819-52922838 | None:intergenic | 50.0% |
| ! | AAAGAACTAGGCCGCTTTGC+CGG | + | chr4_3:52922826-52922845 | Msa0646960:CDS | 50.0% |
| CTTTAGCAGAACCGGCAAAG+CGG | - | chr4_3:52922840-52922859 | None:intergenic | 50.0% | |
| !! | GCTTTGCCGGTTCTGCTAAA+GGG | + | chr4_3:52922839-52922858 | Msa0646960:CDS | 50.0% |
| GATAGAAAGAAAGGAGCCGG+AGG | + | chr4_3:52922889-52922908 | Msa0646960:CDS | 50.0% | |
| AGCTGGAGTTATCAGTCCTC+CGG | - | chr4_3:52922908-52922927 | None:intergenic | 50.0% | |
| TTGTCAGTAACAGGAGGCTC+TGG | - | chr4_3:52923077-52923096 | None:intergenic | 50.0% | |
| ! | GAAAAGGCAGAGGTGCAGAA+TGG | + | chr4_3:52923236-52923255 | Msa0646960:CDS | 50.0% |
| ! | AAAGGCAGAGGTGCAGAATG+GGG | + | chr4_3:52923238-52923257 | Msa0646960:CDS | 50.0% |
| AAAGAGGAAGAAGCAGGCAG+AGG | + | chr4_3:52923292-52923311 | Msa0646960:CDS | 50.0% | |
| !! | GAGAAGGAGGCGCTGGTTTA+GGG | - | chr4_3:52918086-52918105 | None:intergenic | 55.0% |
| !! | AGAGAAGGAGGCGCTGGTTT+AGG | - | chr4_3:52918087-52918106 | None:intergenic | 55.0% |
| CTACTGTTCGAAACACCGGC+CGG | + | chr4_3:52918752-52918771 | Msa0646960:CDS | 55.0% | |
| TACTGTTCGAAACACCGGCC+GGG | + | chr4_3:52918753-52918772 | Msa0646960:CDS | 55.0% | |
| AGACATGGCCCCTATGAGCT+TGG | + | chr4_3:52919812-52919831 | Msa0646960:CDS | 55.0% | |
| GACATGGCCCCTATGAGCTT+GGG | + | chr4_3:52919813-52919832 | Msa0646960:CDS | 55.0% | |
| CACCGAACAGTTGGTTGTGG+CGG | + | chr4_3:52920257-52920276 | Msa0646960:intron | 55.0% | |
| CACCGCCACAACCAACTGTT+CGG | - | chr4_3:52920262-52920281 | None:intergenic | 55.0% | |
| CGGGCACATTAGAAAGCAGC+TGG | - | chr4_3:52921515-52921534 | None:intergenic | 55.0% | |
| GCTATGGTTGGGGAGCTTGT+TGG | + | chr4_3:52922414-52922433 | Msa0646960:CDS | 55.0% | |
| CTCGGCACCAAGAATCTGCA+CGG | - | chr4_3:52922499-52922518 | None:intergenic | 55.0% | |
| TCAGGCCGCTCCAAAGTTCA+AGG | + | chr4_3:52922596-52922615 | Msa0646960:CDS | 55.0% | |
| CAGGCCGCTCCAAAGTTCAA+GGG | + | chr4_3:52922597-52922616 | Msa0646960:CDS | 55.0% | |
| AGGCCGCTCCAAAGTTCAAG+GGG | + | chr4_3:52922598-52922617 | Msa0646960:CDS | 55.0% | |
| GGCTATCAGGTGTGATGCAC+TGG | + | chr4_3:52922656-52922675 | Msa0646960:CDS | 55.0% | |
| AGGTGTGATGCACTGGGTGA+CGG | + | chr4_3:52922663-52922682 | Msa0646960:CDS | 55.0% | |
| !! | CGCTTTGCCGGTTCTGCTAA+AGG | + | chr4_3:52922838-52922857 | Msa0646960:CDS | 55.0% |
| GGGCTTCCCTTTAGCAGAAC+CGG | - | chr4_3:52922848-52922867 | None:intergenic | 55.0% | |
| GGGGACCATACTTCGAATGG+AGG | + | chr4_3:52923257-52923276 | Msa0646960:CDS | 55.0% | |
| ! | CAACTCAGAGAAGGAGGCGC+TGG | - | chr4_3:52918093-52918112 | None:intergenic | 60.0% |
| ACAGTTGGTTGTGGCGGTGC+AGG | + | chr4_3:52920263-52920282 | Msa0646960:intron | 60.0% | |
| GGCGCTATAGCGGCCAATAG+CGG | + | chr4_3:52920535-52920554 | Msa0646960:intron | 60.0% | |
| ! | TAGCGGATAGCGGCACGTAG+CGG | - | chr4_3:52921412-52921431 | None:intergenic | 60.0% |
| GTCAGAGGAGGTTGAGGCAG+AGG | + | chr4_3:52922230-52922249 | Msa0646960:CDS | 60.0% | |
| GGAGGTTGAGGCAGAGGTGA+AGG | + | chr4_3:52922236-52922255 | Msa0646960:CDS | 60.0% | |
| AGCTTCCTCCGTGGGCAATG+AGG | - | chr4_3:52922446-52922465 | None:intergenic | 60.0% | |
| TGGAGCGGCCTGACCAATCA+AGG | - | chr4_3:52922589-52922608 | None:intergenic | 60.0% | |
| GGTGTGATGCACTGGGTGAC+GGG | + | chr4_3:52922664-52922683 | Msa0646960:CDS | 60.0% | |
| GAGGAAGAAGCAGGCAGAGG+AGG | + | chr4_3:52923295-52923314 | Msa0646960:CDS | 60.0% | |
| GCGGCCGCAACACTGCATAG+CGG | + | chr4_3:52920632-52920651 | Msa0646960:intron | 65.0% | |
| GGTGCTCGCCTCATTGCCCA+CGG | + | chr4_3:52922435-52922454 | Msa0646960:CDS | 65.0% | |
| GCTCGCCTCATTGCCCACGG+AGG | + | chr4_3:52922438-52922457 | Msa0646960:CDS | 70.0% | |
| AGCGGCCAATAGCGGCCGCG+CGG | + | chr4_3:52920543-52920562 | Msa0646960:intron | 75.0% | |
| CCAATAGCGGCCGCGCGGTG+CGG | + | chr4_3:52920548-52920567 | Msa0646960:intron | 75.0% | |
| ! | CCGCACCGCGCGGCCGCTAT+TGG | - | chr4_3:52920551-52920570 | None:intergenic | 80.0% |
| ! | CGGTACCGCACCGCACCGCG+CGG | - | chr4_3:52920561-52920580 | None:intergenic | 80.0% |
| ! | CGCGCGGTGCGGTGCGGTAC+CGG | + | chr4_3:52920559-52920578 | Msa0646960:intron | 80.0% |
| ! | AGCGGCCGCGCGGTGCGGTG+CGG | + | chr4_3:52920553-52920572 | Msa0646960:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 52918037 | 52923696 | 52918037 | ID=Msa0646960;Name=Msa0646960 |
| chr4_3 | mRNA | 52918037 | 52923696 | 52918037 | ID=Msa0646960-mRNA-1;Parent=Msa0646960;Name=Msa0646960-mRNA-1;_AED=0.07;_eAED=0.07;_QI=219|0.72|0.83|0.83|0.81|0.66|12|297|640 |
| chr4_3 | exon | 52918037 | 52918232 | 52918037 | ID=Msa0646960-mRNA-1:exon:13073;Parent=Msa0646960-mRNA-1 |
| chr4_3 | exon | 52918723 | 52918823 | 52918723 | ID=Msa0646960-mRNA-1:exon:13074;Parent=Msa0646960-mRNA-1 |
| chr4_3 | exon | 52919244 | 52919285 | 52919244 | ID=Msa0646960-mRNA-1:exon:13075;Parent=Msa0646960-mRNA-1 |
| chr4_3 | exon | 52919455 | 52919634 | 52919455 | ID=Msa0646960-mRNA-1:exon:13076;Parent=Msa0646960-mRNA-1 |
| chr4_3 | exon | 52919720 | 52919884 | 52919720 | ID=Msa0646960-mRNA-1:exon:13077;Parent=Msa0646960-mRNA-1 |
| chr4_3 | exon | 52920267 | 52920337 | 52920267 | ID=Msa0646960-mRNA-1:exon:13078;Parent=Msa0646960-mRNA-1 |
| chr4_3 | exon | 52920838 | 52921018 | 52920838 | ID=Msa0646960-mRNA-1:exon:13079;Parent=Msa0646960-mRNA-1 |
| chr4_3 | exon | 52921788 | 52921988 | 52921788 | ID=Msa0646960-mRNA-1:exon:13080;Parent=Msa0646960-mRNA-1 |
| chr4_3 | exon | 52922225 | 52922722 | 52922225 | ID=Msa0646960-mRNA-1:exon:13081;Parent=Msa0646960-mRNA-1 |
| chr4_3 | exon | 52922796 | 52922930 | 52922796 | ID=Msa0646960-mRNA-1:exon:13082;Parent=Msa0646960-mRNA-1 |
| chr4_3 | exon | 52923008 | 52923413 | 52923008 | ID=Msa0646960-mRNA-1:exon:13083;Parent=Msa0646960-mRNA-1 |
| chr4_3 | exon | 52923434 | 52923696 | 52923434 | ID=Msa0646960-mRNA-1:exon:13084;Parent=Msa0646960-mRNA-1 |
| chr4_3 | five_prime_UTR | 52918037 | 52918232 | 52918037 | ID=Msa0646960-mRNA-1:five_prime_utr;Parent=Msa0646960-mRNA-1 |
| chr4_3 | five_prime_UTR | 52918723 | 52918745 | 52918723 | ID=Msa0646960-mRNA-1:five_prime_utr;Parent=Msa0646960-mRNA-1 |
| chr4_3 | CDS | 52918746 | 52918823 | 52918746 | ID=Msa0646960-mRNA-1:cds;Parent=Msa0646960-mRNA-1 |
| chr4_3 | CDS | 52919244 | 52919285 | 52919244 | ID=Msa0646960-mRNA-1:cds;Parent=Msa0646960-mRNA-1 |
| chr4_3 | CDS | 52919455 | 52919634 | 52919455 | ID=Msa0646960-mRNA-1:cds;Parent=Msa0646960-mRNA-1 |
| chr4_3 | CDS | 52919720 | 52919884 | 52919720 | ID=Msa0646960-mRNA-1:cds;Parent=Msa0646960-mRNA-1 |
| chr4_3 | CDS | 52920267 | 52920337 | 52920267 | ID=Msa0646960-mRNA-1:cds;Parent=Msa0646960-mRNA-1 |
| chr4_3 | CDS | 52920838 | 52921018 | 52920838 | ID=Msa0646960-mRNA-1:cds;Parent=Msa0646960-mRNA-1 |
| chr4_3 | CDS | 52921788 | 52921988 | 52921788 | ID=Msa0646960-mRNA-1:cds;Parent=Msa0646960-mRNA-1 |
| chr4_3 | CDS | 52922225 | 52922722 | 52922225 | ID=Msa0646960-mRNA-1:cds;Parent=Msa0646960-mRNA-1 |
| chr4_3 | CDS | 52922796 | 52922930 | 52922796 | ID=Msa0646960-mRNA-1:cds;Parent=Msa0646960-mRNA-1 |
| chr4_3 | CDS | 52923008 | 52923379 | 52923008 | ID=Msa0646960-mRNA-1:cds;Parent=Msa0646960-mRNA-1 |
| chr4_3 | three_prime_UTR | 52923380 | 52923413 | 52923380 | ID=Msa0646960-mRNA-1:three_prime_utr;Parent=Msa0646960-mRNA-1 |
| chr4_3 | three_prime_UTR | 52923434 | 52923696 | 52923434 | ID=Msa0646960-mRNA-1:three_prime_utr;Parent=Msa0646960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
