Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649010 | XP_003608336.2 | 90.647 | 556 | 21 | 2 | 1 | 553 | 1 | 528 | 0.0 | 1005 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649010 | sp|Q9FLG8|SPNS2_ARATH | 62.712 | 531 | 132 | 6 | 21 | 544 | 12 | 483 | 0.0 | 647 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649010 | G7JTZ9 | 90.647 | 556 | 21 | 2 | 1 | 553 | 1 | 528 | 0.0 | 1005 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0608490 | Msa0649010 | 0.858826 | 6.308591e-63 | -8.615850e-47 |
| Msa0649010 | Msa0649040 | 0.959414 | 2.045920e-117 | -8.615850e-47 |
| Msa0649010 | Msa0654520 | 0.828980 | 6.649725e-55 | -8.615850e-47 |
| Msa0649010 | Msa0691520 | 0.896766 | 2.691113e-76 | -8.615850e-47 |
| Msa0554910 | Msa0649010 | 0.881976 | 1.532963e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649010 | MtrunA17_Chr4g0049371 | 90.647 | 556 | 21 | 2 | 1 | 553 | 1 | 528 | 0.0 | 1005 |
| Msa0649010 | MtrunA17_Chr2g0280091 | 66.667 | 516 | 116 | 6 | 25 | 528 | 1 | 472 | 0.0 | 676 |
| Msa0649010 | MtrunA17_Chr5g0411431 | 64.107 | 521 | 148 | 5 | 29 | 543 | 1 | 488 | 0.0 | 665 |
| Msa0649010 | MtrunA17_Chr2g0280101 | 69.302 | 215 | 31 | 2 | 60 | 271 | 1 | 183 | 1.81e-98 | 297 |
| Msa0649010 | MtrunA17_Chr2g0280111 | 57.143 | 252 | 54 | 3 | 307 | 553 | 13 | 215 | 1.78e-88 | 271 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649010 | AT2G22730.3 | 62.385 | 545 | 156 | 8 | 1 | 525 | 1 | 516 | 0.0 | 659 |
| Msa0649010 | AT5G64500.1 | 62.712 | 531 | 132 | 6 | 21 | 544 | 12 | 483 | 0.0 | 647 |
| Msa0649010 | AT2G22730.2 | 62.289 | 533 | 152 | 8 | 1 | 513 | 1 | 504 | 0.0 | 641 |
| Msa0649010 | AT2G22730.6 | 62.101 | 533 | 153 | 7 | 1 | 526 | 1 | 491 | 0.0 | 639 |
| Msa0649010 | AT2G22730.1 | 62.115 | 520 | 148 | 7 | 1 | 513 | 1 | 478 | 0.0 | 619 |
| Msa0649010 | AT5G65687.1 | 58.149 | 497 | 164 | 8 | 32 | 523 | 12 | 469 | 0.0 | 573 |
| Msa0649010 | AT2G22730.7 | 62.443 | 442 | 122 | 6 | 107 | 534 | 1 | 412 | 0.0 | 541 |
| Msa0649010 | AT2G22730.5 | 58.963 | 463 | 141 | 8 | 1 | 443 | 1 | 434 | 3.72e-179 | 515 |
| Msa0649010 | AT2G22730.4 | 57.421 | 411 | 126 | 7 | 1 | 404 | 1 | 369 | 1.36e-150 | 437 |
Find 169 sgRNAs with CRISPR-Local
Find 518 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGTCTTTCTTTCAATTTC+TGG | 0.022632 | 4_3:+55612419 | Msa0649010:CDS |
| CACCCTATCAAATGCATTTA+AGG | 0.038973 | 4_3:+55615521 | Msa0649010:CDS |
| GATGCTTCCATTTGCTATTT+TGG | 0.067366 | 4_3:+55613634 | Msa0649010:CDS |
| TGGATGGATTATCCTTTATT+TGG | 0.124107 | 4_3:-55609677 | None:intergenic |
| GTAAACCCCTTTAGACTTAT+TGG | 0.127810 | 4_3:+55612358 | Msa0649010:CDS |
| ACAAACTTGTGATTAGATTT+TGG | 0.163860 | 4_3:+55609406 | Msa0649010:five_prime_UTR |
| AATATTCTGTTTGCATGTTT+TGG | 0.190664 | 4_3:-55614900 | None:intergenic |
| CCATGATTCCTGCAACTTCT+TGG | 0.194316 | 4_3:+55610026 | Msa0649010:CDS |
| AATATAATATTATATATTAT+TGG | 0.200897 | 4_3:+55609902 | Msa0649010:five_prime_UTR |
| TACAATTGTATGCGGAATAT+TGG | 0.202232 | 4_3:+55615458 | Msa0649010:CDS |
| ATTATTAATTAAATAGAAAA+TGG | 0.207657 | 4_3:-55609841 | None:intergenic |
| CTTCTTGGTTTACACCAAAA+AGG | 0.250484 | 4_3:+55610041 | Msa0649010:CDS |
| AAACAGGTTGGAAGTCATTT+TGG | 0.253591 | 4_3:+55613578 | Msa0649010:intron |
| ACTAATGCAGATATGATATT+TGG | 0.253804 | 4_3:+55615429 | Msa0649010:CDS |
| CATCGGTGCTTACTCGTATT+GGG | 0.254283 | 4_3:+55615213 | Msa0649010:CDS |
| GATTAACATGTTGAACTATT+TGG | 0.255328 | 4_3:+55610378 | Msa0649010:CDS |
| GCAGCTGCAATATGGTTTAT+TGG | 0.257585 | 4_3:+55616778 | Msa0649010:CDS |
| ATGAAGCCTTTGCAGTTAAA+AGG | 0.258410 | 4_3:+55613665 | Msa0649010:CDS |
| TTTGAAAGAGATGCAAATAT+TGG | 0.266920 | 4_3:-55611815 | None:intergenic |
| TCATCGGTGCTTACTCGTAT+TGG | 0.285278 | 4_3:+55615212 | Msa0649010:CDS |
| GGCAGTTGAGACAGTTCCTT+TGG | 0.285577 | 4_3:+55613799 | Msa0649010:CDS |
| TAGATTTGATACTAAACTTA+TGG | 0.293376 | 4_3:-55609291 | None:intergenic |
| GAAGGTTTCGGTTCATGTTC+AGG | 0.301999 | 4_3:-55609938 | None:intergenic |
| CAACCTTAAATGCATTTGAT+AGG | 0.304914 | 4_3:-55615524 | None:intergenic |
| TTGGAGTTGGATTGTCAGTT+TGG | 0.308512 | 4_3:+55612377 | Msa0649010:CDS |
| TATATACTATAACCAGCTTT+GGG | 0.324548 | 4_3:-55615238 | None:intergenic |
| GTTCCTTCCGCGCCTCTTGT+TGG | 0.325321 | 4_3:+55616589 | Msa0649010:CDS |
| TCCTTTATTTGGGTAATGTA+TGG | 0.328422 | 4_3:-55609666 | None:intergenic |
| AGAACAAGAACAAGAGAGTT+TGG | 0.328600 | 4_3:+55609740 | Msa0649010:five_prime_UTR |
| TGCAGGAATCATGGTGGACT+TGG | 0.331502 | 4_3:-55610017 | None:intergenic |
| TGGTTCTAACCTTCTTATAC+TGG | 0.334464 | 4_3:+55613189 | Msa0649010:CDS |
| ATGTTTATGTTTCACCATCT+TGG | 0.336990 | 4_3:+55617480 | Msa0649010:three_prime_UTR |
| TTGGTTGGCGTTATGCGTTT+TGG | 0.340113 | 4_3:+55613597 | Msa0649010:CDS |
| GTTAGAACCATAAAGAAAAT+AGG | 0.340881 | 4_3:-55613176 | None:intergenic |
| ATAGCTAGCAATGGTGTTAA+TGG | 0.342905 | 4_3:+55610412 | Msa0649010:CDS |
| ACAATTGTATGCGGAATATT+GGG | 0.345355 | 4_3:+55615459 | Msa0649010:CDS |
| TATTTAAATTCGCATATGAT+TGG | 0.352036 | 4_3:-55609625 | None:intergenic |
| GGATGGATTATCCTTTATTT+GGG | 0.359939 | 4_3:-55609676 | None:intergenic |
| CACAAGTTTGTTGTTGCTGC+AGG | 0.360309 | 4_3:-55609394 | None:intergenic |
| GCATAAAAGGTTATCAGAAA+TGG | 0.366960 | 4_3:-55609103 | None:intergenic |
| TCCATACATTACCCAAATAA+AGG | 0.367294 | 4_3:+55609665 | Msa0649010:five_prime_UTR |
| TGCTTGAAGATATTACAAAA+AGG | 0.368513 | 4_3:-55617070 | None:intergenic |
| ATATATACTATAACCAGCTT+TGG | 0.369080 | 4_3:-55615239 | None:intergenic |
| CATCAAAAGATATTACAAAA+AGG | 0.379177 | 4_3:-55617303 | None:intergenic |
| GGTTATCAGAAATGGACAAT+TGG | 0.381660 | 4_3:-55609095 | None:intergenic |
| GAAGTTGTTGTTGAAGGTTT+CGG | 0.387496 | 4_3:-55609950 | None:intergenic |
| TGTTTATGTTTCACCATCTT+GGG | 0.390266 | 4_3:+55617481 | Msa0649010:three_prime_UTR |
| GGTGTAAACCAAGAAGTTGC+AGG | 0.391820 | 4_3:-55610034 | None:intergenic |
| GGAATATTGGGCACTTTAGC+AGG | 0.393766 | 4_3:+55615471 | Msa0649010:CDS |
| CCAACTCCAATAAGTCTAAA+GGG | 0.394466 | 4_3:-55612364 | None:intergenic |
| CCCTTTAGACTTATTGGAGT+TGG | 0.397838 | 4_3:+55612364 | Msa0649010:CDS |
| ACTGTAGCTATTCATATATT+CGG | 0.404341 | 4_3:+55616562 | Msa0649010:CDS |
| TATGCAATTGGCTATGTATA+TGG | 0.405101 | 4_3:+55613268 | Msa0649010:CDS |
| ATTTAAATTCGCATATGATT+GGG | 0.410197 | 4_3:-55609624 | None:intergenic |
| GCCTCTTGTTGGAGTTGTCC+AGG | 0.411072 | 4_3:+55616600 | Msa0649010:CDS |
| GGTTAACCTTCTTGGGATTG+AGG | 0.418224 | 4_3:-55617049 | None:intergenic |
| CTCTCTAGGCTCGTTGGTGT+TGG | 0.418538 | 4_3:+55612582 | Msa0649010:intron |
| GTTATCAGAAATGGACAATT+GGG | 0.424495 | 4_3:-55609094 | None:intergenic |
| TTCGCATTCAAAAGCATGTA+TGG | 0.429280 | 4_3:+55615845 | Msa0649010:CDS |
| ACAGTTCCTTTGGGAGTTCA+AGG | 0.434203 | 4_3:+55613809 | Msa0649010:CDS |
| TTTGGGAGAGATTGAAGAAG+AGG | 0.435580 | 4_3:-55609053 | None:intergenic |
| CAGGAATCATGGTGGACTTG+GGG | 0.437931 | 4_3:-55610015 | None:intergenic |
| ATGTTTGGTTCCACAGAAGA+AGG | 0.439639 | 4_3:-55609989 | None:intergenic |
| ATTGATAGTGGCCTCAAACT+TGG | 0.439716 | 4_3:-55616529 | None:intergenic |
| AAGTAACAAACCTGTGAAGC+TGG | 0.442495 | 4_3:-55612654 | None:intergenic |
| TACAGGATCATATTAACAAC+TGG | 0.443836 | 4_3:+55616716 | Msa0649010:intron |
| TCCAACTCCAATAAGTCTAA+AGG | 0.446511 | 4_3:-55612365 | None:intergenic |
| CATCATGTATCAAAGGTAGA+AGG | 0.453571 | 4_3:+55616986 | Msa0649010:CDS |
| ACAAATCCCAAAATAGCAAA+TGG | 0.454056 | 4_3:-55613641 | None:intergenic |
| TGTTGTTGCTGCAGGGTATG+AGG | 0.454305 | 4_3:-55609386 | None:intergenic |
| GCAGTTGAGACAGTTCCTTT+GGG | 0.456001 | 4_3:+55613800 | Msa0649010:CDS |
| GAAAGAAAGACCACAGCATA+AGG | 0.459452 | 4_3:-55612410 | None:intergenic |
| CAAATCTACAACATTGATCA+TGG | 0.464271 | 4_3:+55609306 | Msa0649010:five_prime_UTR |
| GCAGGAATCATGGTGGACTT+GGG | 0.464706 | 4_3:-55610016 | None:intergenic |
| GTTCTTGTTGACAATGATGT+TGG | 0.465124 | 4_3:-55609722 | None:intergenic |
| GGTATCTGCAAGTCTGGAAC+AGG | 0.465998 | 4_3:+55610457 | Msa0649010:CDS |
| ATAAACCATATTGCAGCTGC+TGG | 0.467805 | 4_3:-55616775 | None:intergenic |
| CCAAGAAGTTGCAGGAATCA+TGG | 0.472191 | 4_3:-55610026 | None:intergenic |
| TATATGTTTGTATATGCAAT+CGG | 0.472667 | 4_3:+55617162 | Msa0649010:three_prime_UTR |
| GAAGAAGAAGTTGTTGTTGA+AGG | 0.473005 | 4_3:-55609956 | None:intergenic |
| CCTGTCTTCTCTTCAAGCAA+TGG | 0.474940 | 4_3:-55617102 | None:intergenic |
| AACCTTAAATGCATTTGATA+GGG | 0.476183 | 4_3:-55615523 | None:intergenic |
| AAAGTGCTGGACACACGTTT+AGG | 0.477991 | 4_3:+55617185 | Msa0649010:three_prime_UTR |
| GGTTCCACAGAAGAAGGGTT+AGG | 0.479643 | 4_3:-55609983 | None:intergenic |
| TCGTATTGGGGCCCCAAAGC+TGG | 0.481238 | 4_3:+55615226 | Msa0649010:CDS |
| TTCTTCTGTGGAACCAAACA+TGG | 0.481946 | 4_3:+55609991 | Msa0649010:CDS |
| CTTATTCTCTCTAGGCTCGT+TGG | 0.482973 | 4_3:+55612576 | Msa0649010:intron |
| AAGTTTGAGGCCACTATCAA+TGG | 0.484428 | 4_3:+55616531 | Msa0649010:CDS |
| TGATAACGCCCCAGCTTCAC+AGG | 0.486992 | 4_3:+55612644 | Msa0649010:CDS |
| GAAATGGACAATTGGGTGGC+TGG | 0.494832 | 4_3:-55609087 | None:intergenic |
| CTCTTCAAGCAATGGTGCTG+TGG | 0.501555 | 4_3:-55617094 | None:intergenic |
| GTAGCCATAGCCATTGATAG+TGG | 0.505422 | 4_3:-55616541 | None:intergenic |
| ACTGATGGTATCTGCAAGTC+TGG | 0.512923 | 4_3:+55610451 | Msa0649010:CDS |
| ATACCAGGCGGATATGCAAT+TGG | 0.513392 | 4_3:+55613256 | Msa0649010:CDS |
| CAAGAGAGTTTGGAAGCTGC+GGG | 0.514497 | 4_3:+55609750 | Msa0649010:five_prime_UTR |
| AATGAAAAGAAATAATAGAA+TGG | 0.519636 | 4_3:-55609019 | None:intergenic |
| TAAACCTTCTTCTTTCTACC+TGG | 0.522437 | 4_3:+55609795 | Msa0649010:five_prime_UTR |
| AATATTATATATTATTGGAA+TGG | 0.524557 | 4_3:+55609907 | Msa0649010:exon |
| AAATAGAAAATGGAGGTTGA+AGG | 0.524772 | 4_3:-55609831 | None:intergenic |
| TTGATACTAAACTTATGGTA+TGG | 0.525927 | 4_3:-55609286 | None:intergenic |
| GAGTGAGCATCATGTATCAA+AGG | 0.526813 | 4_3:+55616979 | Msa0649010:CDS |
| AGTAACAAACCTGTGAAGCT+GGG | 0.527094 | 4_3:-55612653 | None:intergenic |
| CTCTTCAAGCAACGGCGCAG+TGG | 0.528433 | 4_3:-55617014 | None:intergenic |
| TCGTCAAAGTGACGAGGATG+TGG | 0.531526 | 4_3:-55609697 | None:intergenic |
| ATTAATTAAATAGAAAATGG+AGG | 0.532992 | 4_3:-55609838 | None:intergenic |
| CTCTCATTGACAACATTAGT+CGG | 0.535284 | 4_3:+55615800 | Msa0649010:CDS |
| AATGCAGATATGATATTTGG+AGG | 0.536029 | 4_3:+55615432 | Msa0649010:CDS |
| GAAGGTAACAAAAGCATGCC+AGG | 0.539035 | 4_3:-55609813 | None:intergenic |
| GTTGTTGCTGCAGGGTATGA+GGG | 0.539375 | 4_3:-55609385 | None:intergenic |
| GGTAGTCAAAGCAAGATGAC+TGG | 0.543157 | 4_3:-55609265 | None:intergenic |
| TTACATGCGACATAATGTAA+TGG | 0.544368 | 4_3:-55612443 | None:intergenic |
| AACACCTAACCCTTCTTCTG+TGG | 0.544683 | 4_3:+55609979 | Msa0649010:CDS |
| CATTGCTAGCTATTGCTCCT+CGG | 0.549808 | 4_3:-55610402 | None:intergenic |
| CATGCCAGGTAGAAAGAAGA+AGG | 0.550575 | 4_3:-55609799 | None:intergenic |
| AGGTGAAGTTCTCACTTGGA+AGG | 0.555161 | 4_3:-55614623 | None:intergenic |
| TTCTTGGGATTGAGGTTCTG+CGG | 0.555513 | 4_3:-55617041 | None:intergenic |
| GATACATAGCCAGTATAAGA+AGG | 0.558356 | 4_3:-55613198 | None:intergenic |
| ACTCCAACAAGAGGCGCGGA+AGG | 0.560727 | 4_3:-55616592 | None:intergenic |
| TAGCCAATTGCATATCCGCC+TGG | 0.566626 | 4_3:-55613259 | None:intergenic |
| CAAAGTGACGAGGATGTGGA+TGG | 0.567049 | 4_3:-55609693 | None:intergenic |
| ATCGGTGCTTACTCGTATTG+GGG | 0.576291 | 4_3:+55615214 | Msa0649010:CDS |
| ACAAGTTTGTTGTTGCTGCA+GGG | 0.578232 | 4_3:-55609393 | None:intergenic |
| TTTACATGATGTGCCCAAGA+TGG | 0.580075 | 4_3:-55617494 | None:intergenic |
| ATAGCATACAACTTTGTCAT+CGG | 0.582605 | 4_3:+55615196 | Msa0649010:CDS |
| GAGGCCACTATCAATGGCTA+TGG | 0.583730 | 4_3:+55616537 | Msa0649010:CDS |
| ACAAGAGAGTTTGGAAGCTG+CGG | 0.586139 | 4_3:+55609749 | Msa0649010:five_prime_UTR |
| GAGAGATTGAAGAAGAGGAA+AGG | 0.589710 | 4_3:-55609048 | None:intergenic |
| CATCGTGGGAGTTGCACTGA+TGG | 0.591365 | 4_3:+55610436 | Msa0649010:CDS |
| TGTTTGGTTCCACAGAAGAA+GGG | 0.592863 | 4_3:-55609988 | None:intergenic |
| TATTTGCATCTCTTTCAAAG+AGG | 0.593085 | 4_3:+55611819 | Msa0649010:CDS |
| AAGGAGAAATAGAAAACGGA+TGG | 0.596892 | 4_3:-55609545 | None:intergenic |
| GCGGTCTTCTCTTCAAGCAA+CGG | 0.597251 | 4_3:-55617022 | None:intergenic |
| AGAGAGTTTGGAAGCTGCGG+GGG | 0.602322 | 4_3:+55609752 | Msa0649010:five_prime_UTR |
| TGGAGACATACATAATTCAC+AGG | 0.603452 | 4_3:-55616496 | None:intergenic |
| TATATGCAATCGGAAAGTGC+TGG | 0.605386 | 4_3:+55617172 | Msa0649010:three_prime_UTR |
| ATTGTGTTAAGCCAAGTTTG+AGG | 0.607042 | 4_3:+55616518 | Msa0649010:CDS |
| TAGGCTCGTTGGTGTTGGCG+AGG | 0.608838 | 4_3:+55612587 | Msa0649010:intron |
| ATATACTATAACCAGCTTTG+GGG | 0.609629 | 4_3:-55615237 | None:intergenic |
| GGAGGAATTACAATTGTATG+CGG | 0.612364 | 4_3:+55615450 | Msa0649010:CDS |
| CCATTGCTTGAAGAGAAGAC+AGG | 0.614400 | 4_3:+55617102 | Msa0649010:three_prime_UTR |
| GTAACAAACCTGTGAAGCTG+GGG | 0.624884 | 4_3:-55612652 | None:intergenic |
| ACCTGGACAACTCCAACAAG+AGG | 0.626399 | 4_3:-55616601 | None:intergenic |
| CAACTCCAATAAGTCTAAAG+GGG | 0.627956 | 4_3:-55612363 | None:intergenic |
| CGAGGAGCAATAGCTAGCAA+TGG | 0.629263 | 4_3:+55610403 | Msa0649010:CDS |
| ATAGTACCTTGAACTCCCAA+AGG | 0.635654 | 4_3:-55613815 | None:intergenic |
| TCAAACTTGGCTTAACACAA+TGG | 0.635878 | 4_3:-55616516 | None:intergenic |
| GCAGAACCTCAATCCCAAGA+AGG | 0.639701 | 4_3:+55617043 | Msa0649010:CDS |
| ATATTGGGCACTTTAGCAGG+AGG | 0.639746 | 4_3:+55615474 | Msa0649010:CDS |
| TAGTCATGTAATCAAGAACA+AGG | 0.644078 | 4_3:-55615497 | None:intergenic |
| ACTGTTGCAACCTTATGCTG+TGG | 0.644221 | 4_3:+55612400 | Msa0649010:CDS |
| GGGGCGTTATCATCAATGAA+AGG | 0.644741 | 4_3:-55612633 | None:intergenic |
| ATCAGAAATGGACAATTGGG+TGG | 0.646003 | 4_3:-55609091 | None:intergenic |
| TGGTTATAGTATATATAACA+TGG | 0.649082 | 4_3:+55615246 | Msa0649010:CDS |
| AGGAATCATGGTGGACTTGG+GGG | 0.651174 | 4_3:-55610014 | None:intergenic |
| GACAACTCCAACAAGAGGCG+CGG | 0.651802 | 4_3:-55616596 | None:intergenic |
| ATGGACAATTGGGTGGCTGG+CGG | 0.652546 | 4_3:-55609084 | None:intergenic |
| AATGGTGTTAATGGACATCG+TGG | 0.666287 | 4_3:+55610421 | Msa0649010:CDS |
| AAGAGAGTTTGGAAGCTGCG+GGG | 0.675794 | 4_3:+55609751 | Msa0649010:five_prime_UTR |
| TGGCTATGTATATGGTGGAG+TGG | 0.682859 | 4_3:+55613276 | Msa0649010:CDS |
| ATGTTGAACTATTTGGACCG+AGG | 0.689226 | 4_3:+55610385 | Msa0649010:CDS |
| GCAATTGGCTATGTATATGG+TGG | 0.689730 | 4_3:+55613271 | Msa0649010:CDS |
| TCATTGACAACATTAGTCGG+TGG | 0.705421 | 4_3:+55615803 | Msa0649010:CDS |
| AGAAGTTGCAGGAATCATGG+TGG | 0.707926 | 4_3:-55610023 | None:intergenic |
| ATGGTGTTAATGGACATCGT+GGG | 0.725953 | 4_3:+55610422 | Msa0649010:CDS |
| AGAGAAGGGAAGTACCTGAG+TGG | 0.741711 | 4_3:-55615909 | None:intergenic |
| AATGTACGAAACAAACTACG+TGG | 0.765297 | 4_3:-55617331 | None:intergenic |
| TTGGTGTCGTCAAAGTGACG+AGG | 0.769150 | 4_3:-55609703 | None:intergenic |
| CTATGTATCAGAAAACAGTG+TGG | 0.772625 | 4_3:+55613212 | Msa0649010:CDS |
| TATTGTTGTTAGAATCAACG+CGG | 0.775609 | 4_3:-55616746 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAAAAAAAAAAAAA+AGG | - | chr4_3:55609567-55609586 | None:intergenic | 0.0% |
| !! | AATATAATATTATATATTAT+TGG | + | chr4_3:55609902-55609921 | Msa0649010:five_prime_UTR | 0.0% |
| !!! | TGTCAAAATAAATTTTTTTA+AGG | + | chr4_3:55609171-55609190 | Msa0649010:five_prime_UTR | 10.0% |
| !! | AATATTATATATTATTGGAA+TGG | + | chr4_3:55609907-55609926 | Msa0649010:exon | 10.0% |
| !!! | AAAATTTGATTTTTTTGATT+TGG | + | chr4_3:55610131-55610150 | Msa0649010:intron | 10.0% |
| !!! | AAATTTGATTTTTTTGATTT+GGG | + | chr4_3:55610132-55610151 | Msa0649010:intron | 10.0% |
| !!! | TAGATAATTTTATAAAAAGT+CGG | - | chr4_3:55612216-55612235 | None:intergenic | 10.0% |
| !!! | TTGGAATATTTTATATTATA+TGG | + | chr4_3:55613139-55613158 | Msa0649010:CDS | 10.0% |
| !!! | TTTTAAATTATATTTCAAGT+GGG | - | chr4_3:55613880-55613899 | None:intergenic | 10.0% |
| !!! | ATTTTAAATTATATTTCAAG+TGG | - | chr4_3:55613881-55613900 | None:intergenic | 10.0% |
| !! | AATTAAATAAATATGAAGAA+AGG | - | chr4_3:55615013-55615032 | None:intergenic | 10.0% |
| !! | ATTGAATATTTAAATAAGTT+AGG | + | chr4_3:55615631-55615650 | Msa0649010:intron | 10.0% |
| !! | AATGAAAAGAAATAATAGAA+TGG | - | chr4_3:55609022-55609041 | None:intergenic | 15.0% |
| !!! | ATGAAGTTTTTTTTTTTCTT+TGG | - | chr4_3:55609243-55609262 | None:intergenic | 15.0% |
| !!! | TTCTACTGAAAAATATTTTT+TGG | + | chr4_3:55609512-55609531 | Msa0649010:five_prime_UTR | 15.0% |
| !! | ATTAATTAAATAGAAAATGG+AGG | - | chr4_3:55609841-55609860 | None:intergenic | 15.0% |
| !!! | CAATGTTTTTTTATTCAAAA+CGG | - | chr4_3:55610101-55610120 | None:intergenic | 15.0% |
| !! | TGAATAAAAAAACATTGAAA+AGG | + | chr4_3:55610104-55610123 | Msa0649010:intron | 15.0% |
| !!! | TTTCCCTAATTTTATTTTAT+TGG | + | chr4_3:55610196-55610215 | Msa0649010:intron | 15.0% |
| !! | CAACCAATAAAATAAAATTA+GGG | - | chr4_3:55610202-55610221 | None:intergenic | 15.0% |
| !! | ACAACCAATAAAATAAAATT+AGG | - | chr4_3:55610203-55610222 | None:intergenic | 15.0% |
| !!! | TAATTTTATTTTATTGGTTG+TGG | + | chr4_3:55610202-55610221 | Msa0649010:intron | 15.0% |
| !!! | AATTTTATTTTATTGGTTGT+GGG | + | chr4_3:55610203-55610222 | Msa0649010:intron | 15.0% |
| !!! | TATTTTTTATTATGTTGTGT+AGG | + | chr4_3:55610335-55610354 | Msa0649010:intron | 15.0% |
| !!! | TAGTTAAGTTACTAATTTTA+AGG | + | chr4_3:55610678-55610697 | Msa0649010:intron | 15.0% |
| !!! | AGATAATTTTATAAAAAGTC+GGG | - | chr4_3:55612215-55612234 | None:intergenic | 15.0% |
| !! | TATAATATAGATCACATAAA+TGG | - | chr4_3:55612301-55612320 | None:intergenic | 15.0% |
| !!! | AGATTATTTTTCAAGTTTTA+TGG | + | chr4_3:55612476-55612495 | Msa0649010:intron | 15.0% |
| !! | AGAGAATAAGAAAAAAATAA+GGG | - | chr4_3:55612566-55612585 | None:intergenic | 15.0% |
| !!! | TTTAAATTATATTTCAAGTG+GGG | - | chr4_3:55613879-55613898 | None:intergenic | 15.0% |
| !!! | ATTGTTGATAGAAAATTATT+TGG | - | chr4_3:55614231-55614250 | None:intergenic | 15.0% |
| !!! | ATAATTTTCTATCAACAATT+AGG | + | chr4_3:55614232-55614251 | Msa0649010:intron | 15.0% |
| !!! | AAATAACATAATTTTTCTCT+AGG | + | chr4_3:55614436-55614455 | Msa0649010:intron | 15.0% |
| !!! | ATGTTAGGTTTTTATTTTAT+TGG | + | chr4_3:55614499-55614518 | Msa0649010:intron | 15.0% |
| !! | GTAAAAAATAGTTCATATAT+AGG | - | chr4_3:55615114-55615133 | None:intergenic | 15.0% |
| !! | AATTTAAAAAATTACGAATG+AGG | + | chr4_3:55616328-55616347 | Msa0649010:intron | 15.0% |
| !!! | CTGAATTTTATTTGCATAAA+AGG | - | chr4_3:55609119-55609138 | None:intergenic | 20.0% |
| !!! | TTATTTTGACAGAAATATAG+AGG | - | chr4_3:55609162-55609181 | None:intergenic | 20.0% |
| !!! | AAGTTTTTTTTTTTCTTTGG+TGG | - | chr4_3:55609240-55609259 | None:intergenic | 20.0% |
| !! | TAGATTTGATACTAAACTTA+TGG | - | chr4_3:55609294-55609313 | None:intergenic | 20.0% |
| !! | AAAAAAGGAGAAATAGAAAA+CGG | - | chr4_3:55609552-55609571 | None:intergenic | 20.0% |
| !! | TAAGATATGAACAAAAATGA+AGG | + | chr4_3:55609584-55609603 | Msa0649010:five_prime_UTR | 20.0% |
| !! | ATTTAAATTCGCATATGATT+GGG | - | chr4_3:55609627-55609646 | None:intergenic | 20.0% |
| !! | TATTTAAATTCGCATATGAT+TGG | - | chr4_3:55609628-55609647 | None:intergenic | 20.0% |
| !!! | TTTGATTTGGGTATTTATTT+TGG | + | chr4_3:55610144-55610163 | Msa0649010:intron | 20.0% |
| !!! | ATTTTATTTTATTGGTTGTG+GGG | + | chr4_3:55610204-55610223 | Msa0649010:intron | 20.0% |
| !! | TTGAATTCTTGAATAAGTTT+AGG | + | chr4_3:55610533-55610552 | Msa0649010:intron | 20.0% |
| !! | GTTAAATAAAAAAGCAATCT+TGG | + | chr4_3:55610648-55610667 | Msa0649010:intron | 20.0% |
| !!! | TTACTAATTTTAAGGAAGAA+GGG | + | chr4_3:55610686-55610705 | Msa0649010:intron | 20.0% |
| !! | TTCAATCATAAACCATATAT+TGG | - | chr4_3:55610893-55610912 | None:intergenic | 20.0% |
| !! | TTCAATCATAAACCATATAT+TGG | - | chr4_3:55610893-55610912 | None:intergenic | 20.0% |
| !! | TTCAATCATAAACCATATAT+TGG | - | chr4_3:55610893-55610912 | None:intergenic | 20.0% |
| !! | TAGATAGATAGTTCAATTTA+TGG | + | chr4_3:55611509-55611528 | Msa0649010:intron | 20.0% |
| !!! | TTTATTTAAGGTATCATTGT+GGG | - | chr4_3:55611881-55611900 | None:intergenic | 20.0% |
| !!! | ATTTATTTAAGGTATCATTG+TGG | - | chr4_3:55611882-55611901 | None:intergenic | 20.0% |
| !!! | ATGTTCAAGGTATTTATTTA+AGG | - | chr4_3:55611893-55611912 | None:intergenic | 20.0% |
| !! | TATCATTGATATGAGTATTA+AGG | + | chr4_3:55612114-55612133 | Msa0649010:intron | 20.0% |
| !! | ATCATTGATATGAGTATTAA+GGG | + | chr4_3:55612115-55612134 | Msa0649010:intron | 20.0% |
| !! | GAAAAAATAAGAATATCAGA+TGG | - | chr4_3:55612544-55612563 | None:intergenic | 20.0% |
| !! | GAGAGAATAAGAAAAAAATA+AGG | - | chr4_3:55612567-55612586 | None:intergenic | 20.0% |
| !!! | ATTTTTTTCTTATTCTCTCT+AGG | + | chr4_3:55612568-55612587 | Msa0649010:intron | 20.0% |
| !! | CTTAGTTTAACTAAAATATG+AGG | - | chr4_3:55612749-55612768 | None:intergenic | 20.0% |
| !! | TTAATTATGATACCTTCATT+GGG | + | chr4_3:55612825-55612844 | Msa0649010:intron | 20.0% |
| !!! | TTTTATAACTCAAATCACTA+CGG | + | chr4_3:55613009-55613028 | Msa0649010:intron | 20.0% |
| !! | GAAAGATAAAAAAGCAAAAT+AGG | + | chr4_3:55613346-55613365 | Msa0649010:intron | 20.0% |
| !! | AGATAAGAAATATCTTAAAC+AGG | + | chr4_3:55613428-55613447 | Msa0649010:intron | 20.0% |
| !! | GATAAGAAATATCTTAAACA+GGG | + | chr4_3:55613429-55613448 | Msa0649010:intron | 20.0% |
| !! | ATAAGAAATATCTTAAACAG+GGG | + | chr4_3:55613430-55613449 | Msa0649010:intron | 20.0% |
| !! | CAAGTAAAAAAATATGACAA+GGG | - | chr4_3:55613518-55613537 | None:intergenic | 20.0% |
| !! | ACAAGTAAAAAAATATGACA+AGG | - | chr4_3:55613519-55613538 | None:intergenic | 20.0% |
| !!! | TTGCATTGATTTATTTATTG+TGG | + | chr4_3:55613702-55613721 | Msa0649010:intron | 20.0% |
| !!! | TATTATGTTTTAGACTAGTT+TGG | + | chr4_3:55613835-55613854 | Msa0649010:intron | 20.0% |
| !!! | TTAAATTATATTTCAAGTGG+GGG | - | chr4_3:55613878-55613897 | None:intergenic | 20.0% |
| !! | AATCTTTCTATATCTGAAAA+AGG | + | chr4_3:55614152-55614171 | Msa0649010:intron | 20.0% |
| !! | ATCTTTCTATATCTGAAAAA+GGG | + | chr4_3:55614153-55614172 | Msa0649010:intron | 20.0% |
| !! | CATAGACAATATTAAATCTT+AGG | - | chr4_3:55614374-55614393 | None:intergenic | 20.0% |
| !! | AAATAAAAACCTAACATTTC+CGG | - | chr4_3:55614496-55614515 | None:intergenic | 20.0% |
| !! | AATATTTCTCAGCTATTATA+AGG | + | chr4_3:55614732-55614751 | Msa0649010:intron | 20.0% |
| !!! | TAGCAACAAAAGTTTTTAAA+AGG | - | chr4_3:55614796-55614815 | None:intergenic | 20.0% |
| !!! | ATTTTTTGTGACTCTTATAT+AGG | + | chr4_3:55614877-55614896 | Msa0649010:intron | 20.0% |
| !! | TGGTTATAGTATATATAACA+TGG | + | chr4_3:55615246-55615265 | Msa0649010:CDS | 20.0% |
| !! | ATCAAATAAAGAACTGAATT+AGG | - | chr4_3:55615605-55615624 | None:intergenic | 20.0% |
| !! | ATTTAAATAAGTTAGGTAAC+TGG | + | chr4_3:55615638-55615657 | Msa0649010:intron | 20.0% |
| !!! | ACATCTTTTAATATTACTCT+TGG | - | chr4_3:55616253-55616272 | None:intergenic | 20.0% |
| !! | GAGTAATATTAAAAGATGTT+AGG | + | chr4_3:55616254-55616273 | Msa0649010:intron | 20.0% |
| !! | TACGAATAAAAATAAGTGTT+TGG | - | chr4_3:55616449-55616468 | None:intergenic | 20.0% |
| !!! | TTCTTACTATTTTTTCTTTC+AGG | + | chr4_3:55616471-55616490 | Msa0649010:intron | 20.0% |
| !!! | TCTTACTATTTTTTCTTTCA+GGG | + | chr4_3:55616472-55616491 | Msa0649010:intron | 20.0% |
| !! | TATATGTTTGTATATGCAAT+CGG | + | chr4_3:55617162-55617181 | Msa0649010:three_prime_UTR | 20.0% |
| !! | AAAAAGGTTAATAGTATGTT+TGG | - | chr4_3:55617290-55617309 | None:intergenic | 20.0% |
| !! | CATCAAAAGATATTACAAAA+AGG | - | chr4_3:55617306-55617325 | None:intergenic | 20.0% |
| !!! | CTTTTTGTAATATCTTTTGA+TGG | + | chr4_3:55617304-55617323 | Msa0649010:three_prime_UTR | 20.0% |
| !! | TAAGGAGTTACTTTGAAAAA+TGG | + | chr4_3:55609189-55609208 | Msa0649010:five_prime_UTR | 25.0% |
| !! | AAGGAGTTACTTTGAAAAAT+GGG | + | chr4_3:55609190-55609209 | Msa0649010:five_prime_UTR | 25.0% |
| ! | TTGATACTAAACTTATGGTA+TGG | - | chr4_3:55609289-55609308 | None:intergenic | 25.0% |
| !! | ACAAACTTGTGATTAGATTT+TGG | + | chr4_3:55609406-55609425 | Msa0649010:five_prime_UTR | 25.0% |
| !!! | ATTTGGGTATTTATTTTGGA+GGG | + | chr4_3:55610148-55610167 | Msa0649010:intron | 25.0% |
| !!! | TTTTGAATGTTGTTGATGAT+TGG | + | chr4_3:55610230-55610249 | Msa0649010:intron | 25.0% |
| ! | TAATGCAGGTTAAAATTAAC+TGG | + | chr4_3:55610261-55610280 | Msa0649010:intron | 25.0% |
| ! | GATTAACATGTTGAACTATT+TGG | + | chr4_3:55610378-55610397 | Msa0649010:CDS | 25.0% |
| !!! | GTTACTAATTTTAAGGAAGA+AGG | + | chr4_3:55610685-55610704 | Msa0649010:intron | 25.0% |
| ! | TATATTACAGTACACTATCA+TGG | - | chr4_3:55611650-55611669 | None:intergenic | 25.0% |
| !!! | AACTTGAACAATTTTCAAGA+TGG | + | chr4_3:55611749-55611768 | Msa0649010:CDS | 25.0% |
| ! | TTTGAAAGAGATGCAAATAT+TGG | - | chr4_3:55611818-55611837 | None:intergenic | 25.0% |
| !! | TTATTTGACTTCTTAATGCT+AGG | + | chr4_3:55611974-55611993 | Msa0649010:intron | 25.0% |
| !! | ATCATTTTGTGGGATTAATT+TGG | + | chr4_3:55612774-55612793 | Msa0649010:intron | 25.0% |
| !! | TCATTTTGTGGGATTAATTT+GGG | + | chr4_3:55612775-55612794 | Msa0649010:intron | 25.0% |
| ! | GTTAATTATGATACCTTCAT+TGG | + | chr4_3:55612824-55612843 | Msa0649010:intron | 25.0% |
| !! | GTGATTTGAGTTATAAAACT+CGG | - | chr4_3:55613007-55613026 | None:intergenic | 25.0% |
| !! | AATGGTTTGTAGATATAATC+TGG | + | chr4_3:55613081-55613100 | Msa0649010:intron | 25.0% |
| ! | GTTAGAACCATAAAGAAAAT+AGG | - | chr4_3:55613179-55613198 | None:intergenic | 25.0% |
| !! | ATATTTTACATGTGTATACC+AGG | + | chr4_3:55613241-55613260 | Msa0649010:CDS | 25.0% |
| ! | TTACTACTGGAATAAAACAA+TGG | - | chr4_3:55613325-55613344 | None:intergenic | 25.0% |
| !!! | ATTGTTTTATTCCAGTAGTA+AGG | + | chr4_3:55613324-55613343 | Msa0649010:intron | 25.0% |
| !! | TTTTTATCTTTCCTTACTAC+TGG | - | chr4_3:55613338-55613357 | None:intergenic | 25.0% |
| ! | TTGAAAGAGATATATTACAC+TGG | - | chr4_3:55613375-55613394 | None:intergenic | 25.0% |
| ! | ATGTTATAGAAAAGAAGGAT+CGG | - | chr4_3:55614115-55614134 | None:intergenic | 25.0% |
| ! | GAGATATGTTATAGAAAAGA+AGG | - | chr4_3:55614120-55614139 | None:intergenic | 25.0% |
| ! | TAGAAAGATTACAACAATTC+TGG | - | chr4_3:55614142-55614161 | None:intergenic | 25.0% |
| ! | TCTTTCTATATCTGAAAAAG+GGG | + | chr4_3:55614154-55614173 | Msa0649010:intron | 25.0% |
| ! | TTTGAAAAAGGACAAAAGAA+AGG | - | chr4_3:55614280-55614299 | None:intergenic | 25.0% |
| !!! | TTTCTTTTGTCCTTTTTCAA+AGG | + | chr4_3:55614279-55614298 | Msa0649010:intron | 25.0% |
| ! | ACTAACCAAAATTACTTCTT+TGG | + | chr4_3:55614347-55614366 | Msa0649010:intron | 25.0% |
| ! | ACTATGTAAATCAAGGATAA+AGG | - | chr4_3:55614646-55614665 | None:intergenic | 25.0% |
| ! | TTTATCCTTGATTTACATAG+TGG | + | chr4_3:55614645-55614664 | Msa0649010:intron | 25.0% |
| ! | TACATAGTGGTTTCTATATT+TGG | + | chr4_3:55614658-55614677 | Msa0649010:intron | 25.0% |
| !!! | AAAGTTTTTAAAAGGATCGA+GGG | - | chr4_3:55614788-55614807 | None:intergenic | 25.0% |
| !!! | AAAAGTTTTTAAAAGGATCG+AGG | - | chr4_3:55614789-55614808 | None:intergenic | 25.0% |
| !! | AATATTCTGTTTGCATGTTT+TGG | - | chr4_3:55614903-55614922 | None:intergenic | 25.0% |
| !! | AGATATGAAAGAACTTTTGT+CGG | + | chr4_3:55614947-55614966 | Msa0649010:CDS | 25.0% |
| ! | AATAGTTCATATATAGGTAG+AGG | - | chr4_3:55615108-55615127 | None:intergenic | 25.0% |
| ! | ATGCTATATAACCTGAAAAT+AGG | - | chr4_3:55615183-55615202 | None:intergenic | 25.0% |
| ! | TATATACTATAACCAGCTTT+GGG | - | chr4_3:55615241-55615260 | None:intergenic | 25.0% |
| ! | ATATATACTATAACCAGCTT+TGG | - | chr4_3:55615242-55615261 | None:intergenic | 25.0% |
| !! | TAAAATTTTATCCACACTCT+TGG | - | chr4_3:55615294-55615313 | None:intergenic | 25.0% |
| ! | AAACAAGTAACAATGAAAGA+AGG | - | chr4_3:55615318-55615337 | None:intergenic | 25.0% |
| ! | TTTACCAGAAAAATAGGTAT+CGG | - | chr4_3:55615356-55615375 | None:intergenic | 25.0% |
| ! | ATTGTGTTTACCAGAAAAAT+AGG | - | chr4_3:55615362-55615381 | None:intergenic | 25.0% |
| ! | ACTAATGCAGATATGATATT+TGG | + | chr4_3:55615429-55615448 | Msa0649010:CDS | 25.0% |
| ! | AACCTTAAATGCATTTGATA+GGG | - | chr4_3:55615526-55615545 | None:intergenic | 25.0% |
| ! | TTATATCTTAGATACAACTC+AGG | - | chr4_3:55615703-55615722 | None:intergenic | 25.0% |
| ! | TATACATGCTTCTCATTTAT+TGG | + | chr4_3:55615988-55616007 | Msa0649010:intron | 25.0% |
| ! | ATGTAAATCACCTATATAAC+TGG | + | chr4_3:55616114-55616133 | Msa0649010:intron | 25.0% |
| ! | TGTAAATCACCTATATAACT+GGG | + | chr4_3:55616115-55616134 | Msa0649010:intron | 25.0% |
| ! | AATTACATTATACTCAGAAG+TGG | - | chr4_3:55616209-55616228 | None:intergenic | 25.0% |
| ! | ACTGTAGCTATTCATATATT+CGG | + | chr4_3:55616562-55616581 | Msa0649010:CDS | 25.0% |
| ! | AGTACAATACAATATTCTGA+TGG | + | chr4_3:55616681-55616700 | Msa0649010:intron | 25.0% |
| ! | TGCTTGAAGATATTACAAAA+AGG | - | chr4_3:55617073-55617092 | None:intergenic | 25.0% |
| GTTATCAGAAATGGACAATT+GGG | - | chr4_3:55609097-55609116 | None:intergenic | 30.0% | |
| GCATAAAAGGTTATCAGAAA+TGG | - | chr4_3:55609106-55609125 | None:intergenic | 30.0% | |
| CAAATCTACAACATTGATCA+TGG | + | chr4_3:55609306-55609325 | Msa0649010:five_prime_UTR | 30.0% | |
| TCCATACATTACCCAAATAA+AGG | + | chr4_3:55609665-55609684 | Msa0649010:five_prime_UTR | 30.0% | |
| ! | TCCTTTATTTGGGTAATGTA+TGG | - | chr4_3:55609669-55609688 | None:intergenic | 30.0% |
| !! | GGATGGATTATCCTTTATTT+GGG | - | chr4_3:55609679-55609698 | None:intergenic | 30.0% |
| !! | TGGATGGATTATCCTTTATT+TGG | - | chr4_3:55609680-55609699 | None:intergenic | 30.0% |
| AAATAGAAAATGGAGGTTGA+AGG | - | chr4_3:55609834-55609853 | None:intergenic | 30.0% | |
| ACGGATCTATCAACAAAAAA+GGG | - | chr4_3:55610082-55610101 | None:intergenic | 30.0% | |
| AACGGATCTATCAACAAAAA+AGG | - | chr4_3:55610083-55610102 | None:intergenic | 30.0% | |
| !!! | GATTTGGGTATTTATTTTGG+AGG | + | chr4_3:55610147-55610166 | Msa0649010:intron | 30.0% |
| !! | TTTTGGAGGGTTTATAATTC+TGG | + | chr4_3:55610161-55610180 | Msa0649010:intron | 30.0% |
| TTTGGAGGGTTTATAATTCT+GGG | + | chr4_3:55610162-55610181 | Msa0649010:intron | 30.0% | |
| AGAGAGAAAACCTATAGATT+CGG | + | chr4_3:55610755-55610774 | Msa0649010:intron | 30.0% | |
| AAGGAGAGTAAATCAAATGA+AGG | + | chr4_3:55610782-55610801 | Msa0649010:intron | 30.0% | |
| ! | TAGTGAGTTGAACCAATATA+TGG | + | chr4_3:55610878-55610897 | Msa0649010:intron | 30.0% |
| AGAGAGAAAACCTATAGATT+CGG | + | chr4_3:55610755-55610774 | Msa0649010:intron | 30.0% | |
| ! | TAGTGAGTTGAACCAATATA+TGG | + | chr4_3:55610878-55610897 | Msa0649010:intron | 30.0% |
| AGAGAGAAAACCTATAGATT+CGG | + | chr4_3:55610755-55610774 | Msa0649010:intron | 30.0% | |
| AAGGAGAGTAAATCAAATGA+AGG | + | chr4_3:55610782-55610801 | Msa0649010:intron | 30.0% | |
| ATGTCCTAGAAAAACTACAA+GGG | + | chr4_3:55611346-55611365 | Msa0649010:intron | 30.0% | |
| AAACTACAAGGGAAACTATT+AGG | + | chr4_3:55611357-55611376 | Msa0649010:intron | 30.0% | |
| AACTATTAGGAAATACTTGC+AGG | + | chr4_3:55611370-55611389 | Msa0649010:intron | 30.0% | |
| ! | TAGTGAGTTGAACCAATATA+TGG | + | chr4_3:55610878-55610897 | Msa0649010:intron | 30.0% |
| ! | TAAGCTTTATCCAACTAAGT+GGG | - | chr4_3:55611464-55611483 | None:intergenic | 30.0% |
| ! | TTAAGCTTTATCCAACTAAG+TGG | - | chr4_3:55611465-55611484 | None:intergenic | 30.0% |
| TATTTGCATCTCTTTCAAAG+AGG | + | chr4_3:55611819-55611838 | Msa0649010:CDS | 30.0% | |
| TGATTTGATTCACATGTTCA+AGG | - | chr4_3:55611906-55611925 | None:intergenic | 30.0% | |
| TCAAATCAATGACTACTATG+TGG | + | chr4_3:55611918-55611937 | Msa0649010:intron | 30.0% | |
| ! | AGCATGCTTTAAACAACAAT+CGG | + | chr4_3:55612038-55612057 | Msa0649010:intron | 30.0% |
| TTTGTGAATCAAGGACATAT+TGG | - | chr4_3:55612080-55612099 | None:intergenic | 30.0% | |
| !! | ATTGCTTTGTTTGTGAATCA+AGG | - | chr4_3:55612089-55612108 | None:intergenic | 30.0% |
| ATTGATATGAGTATTAAGGG+TGG | + | chr4_3:55612118-55612137 | Msa0649010:intron | 30.0% | |
| TTACATGCGACATAATGTAA+TGG | - | chr4_3:55612446-55612465 | None:intergenic | 30.0% | |
| ! | AAAGCATGAGACAGTTTTTA+GGG | - | chr4_3:55612681-55612700 | None:intergenic | 30.0% |
| ! | ACTAAGAAGCAATCATTTTG+TGG | + | chr4_3:55612763-55612782 | Msa0649010:intron | 30.0% |
| ! | CTAAGAAGCAATCATTTTGT+GGG | + | chr4_3:55612764-55612783 | Msa0649010:intron | 30.0% |
| AATTGTGAGACTATTTGCTT+TGG | + | chr4_3:55612864-55612883 | Msa0649010:intron | 30.0% | |
| ! | GCTTTGGTATAATTGCATTT+TGG | + | chr4_3:55612880-55612899 | Msa0649010:intron | 30.0% |
| AGTTATAAAACTCGGCATTT+AGG | - | chr4_3:55612999-55613018 | None:intergenic | 30.0% | |
| GCTTCTATTCAACATTTCAA+TGG | + | chr4_3:55613063-55613082 | Msa0649010:intron | 30.0% | |
| AAATATTCCAACTGTCAAGA+AGG | - | chr4_3:55613130-55613149 | None:intergenic | 30.0% | |
| ! | TTTGCTGCCTATTTTCTTTA+TGG | + | chr4_3:55613169-55613188 | Msa0649010:CDS | 30.0% |
| TATGCAATTGGCTATGTATA+TGG | + | chr4_3:55613268-55613287 | Msa0649010:CDS | 30.0% | |
| AGCTTGTCACAATAAACTTA+TGG | + | chr4_3:55613479-55613498 | Msa0649010:intron | 30.0% | |
| CAATGAAAGGATAAAATCAG+AGG | - | chr4_3:55613553-55613572 | None:intergenic | 30.0% | |
| TCCTTTCATTGTTCATAAAC+AGG | + | chr4_3:55613562-55613581 | Msa0649010:intron | 30.0% | |
| ACCTGTTTATGAACAATGAA+AGG | - | chr4_3:55613566-55613585 | None:intergenic | 30.0% | |
| TTCATTGTTCATAAACAGGT+TGG | + | chr4_3:55613566-55613585 | Msa0649010:intron | 30.0% | |
| !!! | ATGCTTCCATTTGCTATTTT+GGG | + | chr4_3:55613635-55613654 | Msa0649010:CDS | 30.0% |
| ACAAATCCCAAAATAGCAAA+TGG | - | chr4_3:55613644-55613663 | None:intergenic | 30.0% | |
| AGAGATCGAAAACAATATCA+AGG | - | chr4_3:55613730-55613749 | None:intergenic | 30.0% | |
| TTTCGATCTCTAAACTACTT+TGG | + | chr4_3:55613739-55613758 | Msa0649010:intron | 30.0% | |
| TGTGTAAATATAGATTGGTG+TGG | - | chr4_3:55613944-55613963 | None:intergenic | 30.0% | |
| CGAGTTGTGTAAATATAGAT+TGG | - | chr4_3:55613949-55613968 | None:intergenic | 30.0% | |
| AATAAACTCAACAAGCACAA+AGG | - | chr4_3:55614041-55614060 | None:intergenic | 30.0% | |
| AAAAGGACAAAAGAAAGGAA+CGG | - | chr4_3:55614275-55614294 | None:intergenic | 30.0% | |
| ! | TAGGACCAAAGAAGTAATTT+TGG | - | chr4_3:55614355-55614374 | None:intergenic | 30.0% |
| ! | TTATTTTCCCAGACATGAAA+GGG | - | chr4_3:55614422-55614441 | None:intergenic | 30.0% |
| TTTCAATTACCGGAAATGTT+AGG | + | chr4_3:55614484-55614503 | Msa0649010:intron | 30.0% | |
| GAATCACAATATCTCTTCAT+TGG | + | chr4_3:55614531-55614550 | Msa0649010:intron | 30.0% | |
| !!! | TATCTTTTTTGATGCACAGA+TGG | + | chr4_3:55614566-55614585 | Msa0649010:intron | 30.0% |
| !!! | ATCTTTTTTGATGCACAGAT+GGG | + | chr4_3:55614567-55614586 | Msa0649010:intron | 30.0% |
| AGAAACCACTATGTAAATCA+AGG | - | chr4_3:55614653-55614672 | None:intergenic | 30.0% | |
| AATAGCTGAGAAATATTGAC+AGG | - | chr4_3:55614729-55614748 | None:intergenic | 30.0% | |
| ! | GTTACTGAATTCCTATTTTC+AGG | + | chr4_3:55615169-55615188 | Msa0649010:intron | 30.0% |
| ATAGCATACAACTTTGTCAT+CGG | + | chr4_3:55615196-55615215 | Msa0649010:CDS | 30.0% | |
| ATATACTATAACCAGCTTTG+GGG | - | chr4_3:55615240-55615259 | None:intergenic | 30.0% | |
| TTACCAGAAAAATAGGTATC+GGG | - | chr4_3:55615355-55615374 | None:intergenic | 30.0% | |
| CTGGTAAACACAATGTTAAT+CGG | + | chr4_3:55615368-55615387 | Msa0649010:intron | 30.0% | |
| AATGCAGATATGATATTTGG+AGG | + | chr4_3:55615432-55615451 | Msa0649010:CDS | 30.0% | |
| TACAATTGTATGCGGAATAT+TGG | + | chr4_3:55615458-55615477 | Msa0649010:CDS | 30.0% | |
| ACAATTGTATGCGGAATATT+GGG | + | chr4_3:55615459-55615478 | Msa0649010:CDS | 30.0% | |
| TAGTCATGTAATCAAGAACA+AGG | - | chr4_3:55615500-55615519 | None:intergenic | 30.0% | |
| CAACCTTAAATGCATTTGAT+AGG | - | chr4_3:55615527-55615546 | None:intergenic | 30.0% | |
| ! | CTATCAAATGCATTTAAGGT+TGG | + | chr4_3:55615525-55615544 | Msa0649010:intron | 30.0% |
| ! | AGTTTTCTTCACATAGAGAA+GGG | - | chr4_3:55615926-55615945 | None:intergenic | 30.0% |
| ! | AAGTTTTCTTCACATAGAGA+AGG | - | chr4_3:55615927-55615946 | None:intergenic | 30.0% |
| ! | GAGAAGCATGTATATAGTTT+AGG | - | chr4_3:55615982-55616001 | None:intergenic | 30.0% |
| GATTAACTTCCCAGTTATAT+AGG | - | chr4_3:55616127-55616146 | None:intergenic | 30.0% | |
| ACAATACAATATTCTGATGG+CGG | + | chr4_3:55616684-55616703 | Msa0649010:intron | 30.0% | |
| TACAGGATCATATTAACAAC+TGG | + | chr4_3:55616716-55616735 | Msa0649010:intron | 30.0% | |
| ! | TATTGTTGTTAGAATCAACG+CGG | - | chr4_3:55616749-55616768 | None:intergenic | 30.0% |
| TGTAGCATCATATAATAGCA+TGG | + | chr4_3:55616863-55616882 | Msa0649010:intron | 30.0% | |
| ACTATGCAAAAATATTCCTG+TGG | - | chr4_3:55616939-55616958 | None:intergenic | 30.0% | |
| !! | AGGAATATTTTTGCATAGTG+TGG | + | chr4_3:55616940-55616959 | Msa0649010:intron | 30.0% |
| ACAAAAAGGTTAACCTTCTT+GGG | - | chr4_3:55617059-55617078 | None:intergenic | 30.0% | |
| TACAAAAAGGTTAACCTTCT+TGG | - | chr4_3:55617060-55617079 | None:intergenic | 30.0% | |
| TCAGAAAAAACACGTCAAAA+AGG | + | chr4_3:55617229-55617248 | Msa0649010:three_prime_UTR | 30.0% | |
| ! | AAAACACGTCAAAAAGGTTT+TGG | + | chr4_3:55617235-55617254 | Msa0649010:three_prime_UTR | 30.0% |
| ! | AAACACGTCAAAAAGGTTTT+GGG | + | chr4_3:55617236-55617255 | Msa0649010:three_prime_UTR | 30.0% |
| !! | ATCTTTTTGCTTTTGCTTAG+TGG | + | chr4_3:55617416-55617435 | Msa0649010:three_prime_UTR | 30.0% |
| ATGTTTATGTTTCACCATCT+TGG | + | chr4_3:55617480-55617499 | Msa0649010:three_prime_UTR | 30.0% | |
| TGTTTATGTTTCACCATCTT+GGG | + | chr4_3:55617481-55617500 | Msa0649010:three_prime_UTR | 30.0% | |
| GGTTATCAGAAATGGACAAT+TGG | - | chr4_3:55609098-55609117 | None:intergenic | 35.0% | |
| AAGGAGAAATAGAAAACGGA+TGG | - | chr4_3:55609548-55609567 | None:intergenic | 35.0% | |
| GTTCTTGTTGACAATGATGT+TGG | - | chr4_3:55609725-55609744 | None:intergenic | 35.0% | |
| AGAACAAGAACAAGAGAGTT+TGG | + | chr4_3:55609740-55609759 | Msa0649010:five_prime_UTR | 35.0% | |
| TAAACCTTCTTCTTTCTACC+TGG | + | chr4_3:55609795-55609814 | Msa0649010:five_prime_UTR | 35.0% | |
| ! | GAAGTTGTTGTTGAAGGTTT+CGG | - | chr4_3:55609953-55609972 | None:intergenic | 35.0% |
| ! | GAAGAAGAAGTTGTTGTTGA+AGG | - | chr4_3:55609959-55609978 | None:intergenic | 35.0% |
| CTTCTTGGTTTACACCAAAA+AGG | + | chr4_3:55610041-55610060 | Msa0649010:CDS | 35.0% | |
| ! | GAAAGGGTGAATTACCTTTT+TGG | - | chr4_3:55610058-55610077 | None:intergenic | 35.0% |
| ATCAACAAAAAAGGGGGAAA+GGG | - | chr4_3:55610074-55610093 | None:intergenic | 35.0% | |
| TATCAACAAAAAAGGGGGAA+AGG | - | chr4_3:55610075-55610094 | None:intergenic | 35.0% | |
| GGATCTATCAACAAAAAAGG+GGG | - | chr4_3:55610080-55610099 | None:intergenic | 35.0% | |
| CGGATCTATCAACAAAAAAG+GGG | - | chr4_3:55610081-55610100 | None:intergenic | 35.0% | |
| GATTGGTATTTGACTAATGC+AGG | + | chr4_3:55610247-55610266 | Msa0649010:intron | 35.0% | |
| ! | ATAGCTAGCAATGGTGTTAA+TGG | + | chr4_3:55610412-55610431 | Msa0649010:CDS | 35.0% |
| ! | GGGAATTGAGATTGAGATTT+TGG | + | chr4_3:55610706-55610725 | Msa0649010:intron | 35.0% |
| ! | AACCTATAGATTCGGTAGTA+AGG | + | chr4_3:55610763-55610782 | Msa0649010:intron | 35.0% |
| ! | TTAAGCTTTATCCCACTAAG+TGG | - | chr4_3:55610949-55610968 | None:intergenic | 35.0% |
| ACTTAGTGGGATAAAGCTTA+AGG | + | chr4_3:55610948-55610967 | Msa0649010:intron | 35.0% | |
| GGATAAAGCTTAAGGAAGAA+GGG | + | chr4_3:55610956-55610975 | Msa0649010:intron | 35.0% | |
| ! | GGGAATTGAGATTGAGATTT+TGG | + | chr4_3:55610706-55610725 | Msa0649010:intron | 35.0% |
| TTACTATCCACCGAATCTAT+AGG | - | chr4_3:55611038-55611057 | None:intergenic | 35.0% | |
| ! | TTAAGCTTTATCCCACTAAG+TGG | - | chr4_3:55610949-55610968 | None:intergenic | 35.0% |
| ACTTAGTGGGATAAAGCTTA+AGG | + | chr4_3:55610948-55610967 | Msa0649010:intron | 35.0% | |
| GGATAAAGCTTAAGGAAGAA+GGG | + | chr4_3:55610956-55610975 | Msa0649010:intron | 35.0% | |
| ! | GGGAATTGAGATTGAGATTT+TGG | + | chr4_3:55610706-55610725 | Msa0649010:intron | 35.0% |
| ! | AACCTATAGATTCGGTAGTA+AGG | + | chr4_3:55610763-55610782 | Msa0649010:intron | 35.0% |
| GATGTCCTAGAAAAACTACA+AGG | + | chr4_3:55611345-55611364 | Msa0649010:intron | 35.0% | |
| ! | GTTTCCCTTGTAGTTTTTCT+AGG | - | chr4_3:55611353-55611372 | None:intergenic | 35.0% |
| !! | ATTGTTTTGTACTTCCGTGT+AGG | + | chr4_3:55611717-55611736 | Msa0649010:intron | 35.0% |
| !! | TTGTTTTGTACTTCCGTGTA+GGG | + | chr4_3:55611718-55611737 | Msa0649010:intron | 35.0% |
| !! | AGTTCTCTCATCTGCTTTTA+TGG | + | chr4_3:55611772-55611791 | Msa0649010:CDS | 35.0% |
| TCGGGCACAATAAAATGATA+AGG | - | chr4_3:55612197-55612216 | None:intergenic | 35.0% | |
| TAACCCAATACTGAGAACTT+TGG | + | chr4_3:55612248-55612267 | Msa0649010:intron | 35.0% | |
| GGGTTTACACTGCAAAATAT+AGG | - | chr4_3:55612346-55612365 | None:intergenic | 35.0% | |
| GTAAACCCCTTTAGACTTAT+TGG | + | chr4_3:55612358-55612377 | Msa0649010:CDS | 35.0% | |
| CAACTCCAATAAGTCTAAAG+GGG | - | chr4_3:55612366-55612385 | None:intergenic | 35.0% | |
| CCAACTCCAATAAGTCTAAA+GGG | - | chr4_3:55612367-55612386 | None:intergenic | 35.0% | |
| TCCAACTCCAATAAGTCTAA+AGG | - | chr4_3:55612368-55612387 | None:intergenic | 35.0% | |
| GTGGTCTTTCTTTCAATTTC+TGG | + | chr4_3:55612419-55612438 | Msa0649010:CDS | 35.0% | |
| !! | GAAAGCATGAGACAGTTTTT+AGG | - | chr4_3:55612682-55612701 | None:intergenic | 35.0% |
| AATATGAGCACAATAGACGA+TGG | - | chr4_3:55612722-55612741 | None:intergenic | 35.0% | |
| CGTCTATTGTGCTCATATTT+AGG | + | chr4_3:55612723-55612742 | Msa0649010:intron | 35.0% | |
| ACGTATTAATGACCCAATGA+AGG | - | chr4_3:55612840-55612859 | None:intergenic | 35.0% | |
| CTCAAATCACTACGGAAATT+TGG | + | chr4_3:55613017-55613036 | Msa0649010:intron | 35.0% | |
| TTTCTTACCTTCTTGACAGT+TGG | + | chr4_3:55613120-55613139 | Msa0649010:intron | 35.0% | |
| !! | TGGTTCTAACCTTCTTATAC+TGG | + | chr4_3:55613189-55613208 | Msa0649010:CDS | 35.0% |
| GATACATAGCCAGTATAAGA+AGG | - | chr4_3:55613201-55613220 | None:intergenic | 35.0% | |
| CTATGTATCAGAAAACAGTG+TGG | + | chr4_3:55613212-55613231 | Msa0649010:CDS | 35.0% | |
| ! | TTTTACATGTGTATACCAGG+CGG | + | chr4_3:55613244-55613263 | Msa0649010:CDS | 35.0% |
| AGAAATATCTTAAACAGGGG+AGG | + | chr4_3:55613433-55613452 | Msa0649010:intron | 35.0% | |
| !! | AAACAGGTTGGAAGTCATTT+TGG | + | chr4_3:55613578-55613597 | Msa0649010:intron | 35.0% |
| !!! | GATGCTTCCATTTGCTATTT+TGG | + | chr4_3:55613634-55613653 | Msa0649010:CDS | 35.0% |
| ATGAAGCCTTTGCAGTTAAA+AGG | + | chr4_3:55613665-55613684 | Msa0649010:CDS | 35.0% | |
| CTCTAAACTACTTTGGATAC+AGG | + | chr4_3:55613746-55613765 | Msa0649010:intron | 35.0% | |
| !!! | GCACATTTTTTGAATCAGCA+GGG | - | chr4_3:55613778-55613797 | None:intergenic | 35.0% |
| !!! | AGCACATTTTTTGAATCAGC+AGG | - | chr4_3:55613779-55613798 | None:intergenic | 35.0% |
| !! | TGCTGATTCAAAAAATGTGC+TGG | + | chr4_3:55613778-55613797 | Msa0649010:CDS | 35.0% |
| !!! | TGTTTTAGACTAGTTTGGTG+AGG | + | chr4_3:55613840-55613859 | Msa0649010:intron | 35.0% |
| TAAAAAAAGCAATCCAGCAC+AGG | - | chr4_3:55614083-55614102 | None:intergenic | 35.0% | |
| TCTCAACAATCAGGGTTTAA+TGG | - | chr4_3:55614201-55614220 | None:intergenic | 35.0% | |
| GAGAACATTCTCAACAATCA+GGG | - | chr4_3:55614209-55614228 | None:intergenic | 35.0% | |
| AATATTTCCCCTTTCATGTC+TGG | + | chr4_3:55614411-55614430 | Msa0649010:intron | 35.0% | |
| ATATTTCCCCTTTCATGTCT+GGG | + | chr4_3:55614412-55614431 | Msa0649010:intron | 35.0% | |
| ! | TATTTTCCCAGACATGAAAG+GGG | - | chr4_3:55614421-55614440 | None:intergenic | 35.0% |
| !! | GTTATTTTCCCAGACATGAA+AGG | - | chr4_3:55614423-55614442 | None:intergenic | 35.0% |
| CACCTATGTCTTTCAATTAC+CGG | + | chr4_3:55614474-55614493 | Msa0649010:intron | 35.0% | |
| TTCCGGTAATTGAAAGACAT+AGG | - | chr4_3:55614479-55614498 | None:intergenic | 35.0% | |
| !!! | TCTTTTTTGATGCACAGATG+GGG | + | chr4_3:55614568-55614587 | Msa0649010:intron | 35.0% |
| ATAAAGGTGAAGTTCTCACT+TGG | - | chr4_3:55614630-55614649 | None:intergenic | 35.0% | |
| TTATTGTATCTCCAAGTGTG+TGG | + | chr4_3:55614821-55614840 | Msa0649010:intron | 35.0% | |
| ! | GAAAGAACTTTTGTCGGATA+AGG | + | chr4_3:55614953-55614972 | Msa0649010:CDS | 35.0% |
| CATATATAGGTAGAGGAGAA+TGG | - | chr4_3:55615101-55615120 | None:intergenic | 35.0% | |
| GGAGGAATTACAATTGTATG+CGG | + | chr4_3:55615450-55615469 | Msa0649010:CDS | 35.0% | |
| CACCCTATCAAATGCATTTA+AGG | + | chr4_3:55615521-55615540 | Msa0649010:CDS | 35.0% | |
| TTCAAGGTAACTAGTTAGGA+TGG | - | chr4_3:55615767-55615786 | None:intergenic | 35.0% | |
| AGAGTTCAAGGTAACTAGTT+AGG | - | chr4_3:55615771-55615790 | None:intergenic | 35.0% | |
| CTCTCATTGACAACATTAGT+CGG | + | chr4_3:55615800-55615819 | Msa0649010:CDS | 35.0% | |
| ! | ATACATGCTTTTGAATGCGA+AGG | - | chr4_3:55615846-55615865 | None:intergenic | 35.0% |
| ! | TTCGCATTCAAAAGCATGTA+TGG | + | chr4_3:55615845-55615864 | Msa0649010:CDS | 35.0% |
| !! | TTCCTAGCTCTTTTTGCTAT+TGG | + | chr4_3:55615869-55615888 | Msa0649010:CDS | 35.0% |
| TCCAAACCTAATGTTGTGTT+TGG | + | chr4_3:55616160-55616179 | Msa0649010:intron | 35.0% | |
| TCCAAACACAACATTAGGTT+TGG | - | chr4_3:55616164-55616183 | None:intergenic | 35.0% | |
| AGTCATCCAAACACAACATT+AGG | - | chr4_3:55616169-55616188 | None:intergenic | 35.0% | |
| TACGAATGAGGACAAAATTG+AGG | + | chr4_3:55616340-55616359 | Msa0649010:intron | 35.0% | |
| GATGATGTAGAATGTAGAGA+TGG | + | chr4_3:55616418-55616437 | Msa0649010:intron | 35.0% | |
| TGGAGACATACATAATTCAC+AGG | - | chr4_3:55616499-55616518 | None:intergenic | 35.0% | |
| TCAAACTTGGCTTAACACAA+TGG | - | chr4_3:55616519-55616538 | None:intergenic | 35.0% | |
| ATTGTGTTAAGCCAAGTTTG+AGG | + | chr4_3:55616518-55616537 | Msa0649010:CDS | 35.0% | |
| ! | TTGTCCAGGTTAGCATTTTT+AGG | + | chr4_3:55616614-55616633 | Msa0649010:intron | 35.0% |
| TACACCTAAAAATGCTAACC+TGG | - | chr4_3:55616621-55616640 | None:intergenic | 35.0% | |
| GGTTTATTGGTAAGTCATCA+TGG | + | chr4_3:55616791-55616810 | Msa0649010:intron | 35.0% | |
| TCATGATACTTTGTTACCAC+AGG | + | chr4_3:55616920-55616939 | Msa0649010:intron | 35.0% | |
| CATCATGTATCAAAGGTAGA+AGG | + | chr4_3:55616986-55617005 | Msa0649010:CDS | 35.0% | |
| AATGTACGAAACAAACTACG+TGG | - | chr4_3:55617334-55617353 | None:intergenic | 35.0% | |
| !! | TTGCTTTTGCTTAGTGGAAA+TGG | + | chr4_3:55617422-55617441 | Msa0649010:three_prime_UTR | 35.0% |
| GAGAGATTGAAGAAGAGGAA+AGG | - | chr4_3:55609051-55609070 | None:intergenic | 40.0% | |
| TTTGGGAGAGATTGAAGAAG+AGG | - | chr4_3:55609056-55609075 | None:intergenic | 40.0% | |
| ATCAGAAATGGACAATTGGG+TGG | - | chr4_3:55609094-55609113 | None:intergenic | 40.0% | |
| !! | ACAAGTTTGTTGTTGCTGCA+GGG | - | chr4_3:55609396-55609415 | None:intergenic | 40.0% |
| ! | TGTTTGGTTCCACAGAAGAA+GGG | - | chr4_3:55609991-55610010 | None:intergenic | 40.0% |
| ! | ATGTTTGGTTCCACAGAAGA+AGG | - | chr4_3:55609992-55610011 | None:intergenic | 40.0% |
| TTCTTCTGTGGAACCAAACA+TGG | + | chr4_3:55609991-55610010 | Msa0649010:CDS | 40.0% | |
| ATGTTGAACTATTTGGACCG+AGG | + | chr4_3:55610385-55610404 | Msa0649010:CDS | 40.0% | |
| ! | AATGGTGTTAATGGACATCG+TGG | + | chr4_3:55610421-55610440 | Msa0649010:CDS | 40.0% |
| ! | ATGGTGTTAATGGACATCGT+GGG | + | chr4_3:55610422-55610441 | Msa0649010:CDS | 40.0% |
| ACACAGAGTCATGAATGACA+TGG | + | chr4_3:55610593-55610612 | Msa0649010:intron | 40.0% | |
| TTCTCTCTACATGCCCAAAA+GGG | - | chr4_3:55610743-55610762 | None:intergenic | 40.0% | |
| TTTCTCTCTACATGCCCAAA+AGG | - | chr4_3:55610744-55610763 | None:intergenic | 40.0% | |
| CTCCTTACTACCGAATCTAT+AGG | - | chr4_3:55610768-55610787 | None:intergenic | 40.0% | |
| AAGGATAGTAAGATCACGAG+AGG | + | chr4_3:55610801-55610820 | Msa0649010:intron | 40.0% | |
| ACTAAGTGGAATCGTCTACA+TGG | - | chr4_3:55610935-55610954 | None:intergenic | 40.0% | |
| ATGTAGACGATTCCACTTAG+TGG | + | chr4_3:55610934-55610953 | Msa0649010:intron | 40.0% | |
| TGTAGACGATTCCACTTAGT+GGG | + | chr4_3:55610935-55610954 | Msa0649010:intron | 40.0% | |
| GGGATAAAGCTTAAGGAAGA+AGG | + | chr4_3:55610955-55610974 | Msa0649010:intron | 40.0% | |
| TTCTCTCTACATGCCCAAAA+GGG | - | chr4_3:55610743-55610762 | None:intergenic | 40.0% | |
| TTTCTCTCTACATGCCCAAA+AGG | - | chr4_3:55610744-55610763 | None:intergenic | 40.0% | |
| GAGAAAACCTATAGATTCGG+TGG | + | chr4_3:55610758-55610777 | Msa0649010:intron | 40.0% | |
| ACTAAGTGGAATCGTCTACA+TGG | - | chr4_3:55610935-55610954 | None:intergenic | 40.0% | |
| ATGTAGACGATTCCACTTAG+TGG | + | chr4_3:55610934-55610953 | Msa0649010:intron | 40.0% | |
| TGTAGACGATTCCACTTAGT+GGG | + | chr4_3:55610935-55610954 | Msa0649010:intron | 40.0% | |
| GGGATAAAGCTTAAGGAAGA+AGG | + | chr4_3:55610955-55610974 | Msa0649010:intron | 40.0% | |
| TTCTCTCTACATGCCCAAAA+GGG | - | chr4_3:55610743-55610762 | None:intergenic | 40.0% | |
| TTTCTCTCTACATGCCCAAA+AGG | - | chr4_3:55610744-55610763 | None:intergenic | 40.0% | |
| CTCCTTACTACCGAATCTAT+AGG | - | chr4_3:55610768-55610787 | None:intergenic | 40.0% | |
| AAGGATAGTAAGATCACGAG+AGG | + | chr4_3:55610801-55610820 | Msa0649010:intron | 40.0% | |
| TGTAGATGATCCCACTTAGT+TGG | + | chr4_3:55611451-55611470 | Msa0649010:intron | 40.0% | |
| CTATCATGGTATGAAACACG+TGG | - | chr4_3:55611636-55611655 | None:intergenic | 40.0% | |
| ! | TGTTTTGTACTTCCGTGTAG+GGG | + | chr4_3:55611719-55611738 | Msa0649010:intron | 40.0% |
| AAGTTAAAATCCCCCCTACA+CGG | - | chr4_3:55611734-55611753 | None:intergenic | 40.0% | |
| !! | CTCTCATCTGCTTTTATGGT+TGG | + | chr4_3:55611776-55611795 | Msa0649010:CDS | 40.0% |
| ATGACTACTATGTGGCTCAT+TGG | + | chr4_3:55611926-55611945 | Msa0649010:intron | 40.0% | |
| TGACTACTATGTGGCTCATT+GGG | + | chr4_3:55611927-55611946 | Msa0649010:intron | 40.0% | |
| GGTCCAAAGTTCTCAGTATT+GGG | - | chr4_3:55612254-55612273 | None:intergenic | 40.0% | |
| AGGTCCAAAGTTCTCAGTAT+TGG | - | chr4_3:55612255-55612274 | None:intergenic | 40.0% | |
| CCCTTTAGACTTATTGGAGT+TGG | + | chr4_3:55612364-55612383 | Msa0649010:CDS | 40.0% | |
| TTGGAGTTGGATTGTCAGTT+TGG | + | chr4_3:55612377-55612396 | Msa0649010:CDS | 40.0% | |
| GAAAGAAAGACCACAGCATA+AGG | - | chr4_3:55612413-55612432 | None:intergenic | 40.0% | |
| AGTAACAAACCTGTGAAGCT+GGG | - | chr4_3:55612656-55612675 | None:intergenic | 40.0% | |
| AAGTAACAAACCTGTGAAGC+TGG | - | chr4_3:55612657-55612676 | None:intergenic | 40.0% | |
| GCAATTGGCTATGTATATGG+TGG | + | chr4_3:55613271-55613290 | Msa0649010:CDS | 40.0% | |
| GGGGAGGTAATTAAAAGAGT+AGG | + | chr4_3:55613449-55613468 | Msa0649010:intron | 40.0% | |
| !! | AGGTTGGAAGTCATTTTGGT+TGG | + | chr4_3:55613582-55613601 | Msa0649010:intron | 40.0% |
| !! | TGTGCACCTTTTAACTGCAA+AGG | - | chr4_3:55613674-55613693 | None:intergenic | 40.0% |
| ATAGTACCTTGAACTCCCAA+AGG | - | chr4_3:55613818-55613837 | None:intergenic | 40.0% | |
| ! | GTGCATGTTGTGTTACTACA+TGG | + | chr4_3:55613910-55613929 | Msa0649010:intron | 40.0% |
| CAGCACAGGAGAAAAAAATC+AGG | - | chr4_3:55614069-55614088 | None:intergenic | 40.0% | |
| !!! | CTGATTTTTTTCTCCTGTGC+TGG | + | chr4_3:55614067-55614086 | Msa0649010:intron | 40.0% |
| GGAGAACATTCTCAACAATC+AGG | - | chr4_3:55614210-55614229 | None:intergenic | 40.0% | |
| !!! | TCCTTTTTCAAAGGCAAGTG+AGG | + | chr4_3:55614288-55614307 | Msa0649010:intron | 40.0% |
| !!! | CCTTTTTCAAAGGCAAGTGA+GGG | + | chr4_3:55614289-55614308 | Msa0649010:intron | 40.0% |
| GATAATCATTCTCAGCTGGA+GGG | - | chr4_3:55614766-55614785 | None:intergenic | 40.0% | |
| ! | GTTTTTGTCGTCAACGTTCT+AGG | + | chr4_3:55614975-55614994 | Msa0649010:CDS | 40.0% |
| TTCATCTAATGCCAAGAGTG+TGG | + | chr4_3:55615280-55615299 | Msa0649010:intron | 40.0% | |
| !! | ATGCCCGATACCTATTTTTC+TGG | + | chr4_3:55615349-55615368 | Msa0649010:intron | 40.0% |
| TTTACAGGAGAGACTTAGGA+AGG | - | chr4_3:55615734-55615753 | None:intergenic | 40.0% | |
| GGAATTTACAGGAGAGACTT+AGG | - | chr4_3:55615738-55615757 | None:intergenic | 40.0% | |
| GATGGAGCAATGGAATTTAC+AGG | - | chr4_3:55615749-55615768 | None:intergenic | 40.0% | |
| AACTAGTTAGGATGGAGCAA+TGG | - | chr4_3:55615759-55615778 | None:intergenic | 40.0% | |
| GAGAAGCTGAAAAGAGTTCA+AGG | - | chr4_3:55615783-55615802 | None:intergenic | 40.0% | |
| TCATTGACAACATTAGTCGG+TGG | + | chr4_3:55615803-55615822 | Msa0649010:CDS | 40.0% | |
| CACCAATAGCAAAAAGAGCT+AGG | - | chr4_3:55615874-55615893 | None:intergenic | 40.0% | |
| !!! | ACTACTTGTTTTTGCCACTC+AGG | + | chr4_3:55615895-55615914 | Msa0649010:CDS | 40.0% |
| !! | ATTGATAGTGGCCTCAAACT+TGG | - | chr4_3:55616532-55616551 | None:intergenic | 40.0% |
| ! | AAGTTTGAGGCCACTATCAA+TGG | + | chr4_3:55616531-55616550 | Msa0649010:CDS | 40.0% |
| ! | TTTTTCCAGCAGCTGCAATA+TGG | + | chr4_3:55616770-55616789 | Msa0649010:CDS | 40.0% |
| ATAAACCATATTGCAGCTGC+TGG | - | chr4_3:55616778-55616797 | None:intergenic | 40.0% | |
| GCAGCTGCAATATGGTTTAT+TGG | + | chr4_3:55616778-55616797 | Msa0649010:CDS | 40.0% | |
| GAGTGAGCATCATGTATCAA+AGG | + | chr4_3:55616979-55616998 | Msa0649010:CDS | 40.0% | |
| ! | TATATGCAATCGGAAAGTGC+TGG | + | chr4_3:55617172-55617191 | Msa0649010:three_prime_UTR | 40.0% |
| TTTACATGATGTGCCCAAGA+TGG | - | chr4_3:55617497-55617516 | None:intergenic | 40.0% | |
| GGTAGTCAAAGCAAGATGAC+TGG | - | chr4_3:55609268-55609287 | None:intergenic | 45.0% | |
| !! | CACAAGTTTGTTGTTGCTGC+AGG | - | chr4_3:55609397-55609416 | None:intergenic | 45.0% |
| ACAAGAGAGTTTGGAAGCTG+CGG | + | chr4_3:55609749-55609768 | Msa0649010:five_prime_UTR | 45.0% | |
| CATGCCAGGTAGAAAGAAGA+AGG | - | chr4_3:55609802-55609821 | None:intergenic | 45.0% | |
| ! | GAAGGTAACAAAAGCATGCC+AGG | - | chr4_3:55609816-55609835 | None:intergenic | 45.0% |
| GAAGGTTTCGGTTCATGTTC+AGG | - | chr4_3:55609941-55609960 | None:intergenic | 45.0% | |
| AACACCTAACCCTTCTTCTG+TGG | + | chr4_3:55609979-55609998 | Msa0649010:CDS | 45.0% | |
| AGAAGTTGCAGGAATCATGG+TGG | - | chr4_3:55610026-55610045 | None:intergenic | 45.0% | |
| CCAAGAAGTTGCAGGAATCA+TGG | - | chr4_3:55610029-55610048 | None:intergenic | 45.0% | |
| CCATGATTCCTGCAACTTCT+TGG | + | chr4_3:55610026-55610045 | Msa0649010:CDS | 45.0% | |
| GGTGTAAACCAAGAAGTTGC+AGG | - | chr4_3:55610037-55610056 | None:intergenic | 45.0% | |
| CATTGCTAGCTATTGCTCCT+CGG | - | chr4_3:55610405-55610424 | None:intergenic | 45.0% | |
| ACTGATGGTATCTGCAAGTC+TGG | + | chr4_3:55610451-55610470 | Msa0649010:CDS | 45.0% | |
| ! | TGGTGATAAATGCCCCCTTT+TGG | + | chr4_3:55610726-55610745 | Msa0649010:intron | 45.0% |
| ! | GGTGATAAATGCCCCCTTTT+GGG | + | chr4_3:55610727-55610746 | Msa0649010:intron | 45.0% |
| TCTCTCTACATGCCCAAAAG+GGG | - | chr4_3:55610742-55610761 | None:intergenic | 45.0% | |
| AGTAAGATCACGAGAGGCAA+AGG | + | chr4_3:55610807-55610826 | Msa0649010:intron | 45.0% | |
| ! | TGGTGATAAATGCCCCCTTT+TGG | + | chr4_3:55610726-55610745 | Msa0649010:intron | 45.0% |
| ! | GGTGATAAATGCCCCCTTTT+GGG | + | chr4_3:55610727-55610746 | Msa0649010:intron | 45.0% |
| TCTCTCTACATGCCCAAAAG+GGG | - | chr4_3:55610742-55610761 | None:intergenic | 45.0% | |
| GTGGATAGTAAGATCACGAG+AGG | + | chr4_3:55611047-55611066 | Msa0649010:intron | 45.0% | |
| AGTAAGATCACGAGAGGCAA+AGG | + | chr4_3:55610807-55610826 | Msa0649010:intron | 45.0% | |
| ! | TGGTGATAAATGCCCCCTTT+TGG | + | chr4_3:55610726-55610745 | Msa0649010:intron | 45.0% |
| ! | GGTGATAAATGCCCCCTTTT+GGG | + | chr4_3:55610727-55610746 | Msa0649010:intron | 45.0% |
| TCTCTCTACATGCCCAAAAG+GGG | - | chr4_3:55610742-55610761 | None:intergenic | 45.0% | |
| AGTAAGATCACGAGAGGCAA+AGG | + | chr4_3:55610807-55610826 | Msa0649010:intron | 45.0% | |
| ACACGTGGAAAAGCTCATAC+AGG | - | chr4_3:55611621-55611640 | None:intergenic | 45.0% | |
| ! | GTTTTGTACTTCCGTGTAGG+GGG | + | chr4_3:55611720-55611739 | Msa0649010:intron | 45.0% |
| ! | TTTTGTACTTCCGTGTAGGG+GGG | + | chr4_3:55611721-55611740 | Msa0649010:intron | 45.0% |
| GTGCGTGTACTTGAAAGAGA+AGG | - | chr4_3:55612275-55612294 | None:intergenic | 45.0% | |
| ACTGTTGCAACCTTATGCTG+TGG | + | chr4_3:55612400-55612419 | Msa0649010:CDS | 45.0% | |
| CTTATTCTCTCTAGGCTCGT+TGG | + | chr4_3:55612576-55612595 | Msa0649010:intron | 45.0% | |
| ! | GGGGCGTTATCATCAATGAA+AGG | - | chr4_3:55612636-55612655 | None:intergenic | 45.0% |
| GTAACAAACCTGTGAAGCTG+GGG | - | chr4_3:55612655-55612674 | None:intergenic | 45.0% | |
| ATACCAGGCGGATATGCAAT+TGG | + | chr4_3:55613256-55613275 | Msa0649010:CDS | 45.0% | |
| ! | TGGCTATGTATATGGTGGAG+TGG | + | chr4_3:55613276-55613295 | Msa0649010:CDS | 45.0% |
| ! | TTGGTTGGCGTTATGCGTTT+TGG | + | chr4_3:55613597-55613616 | Msa0649010:CDS | 45.0% |
| ! | TGGTTGGCGTTATGCGTTTT+GGG | + | chr4_3:55613598-55613617 | Msa0649010:CDS | 45.0% |
| GCAGTTGAGACAGTTCCTTT+GGG | + | chr4_3:55613800-55613819 | Msa0649010:CDS | 45.0% | |
| ! | ACAGTTCCTTTGGGAGTTCA+AGG | + | chr4_3:55613809-55613828 | Msa0649010:CDS | 45.0% |
| ! | CCCTCACTTGCCTTTGAAAA+AGG | - | chr4_3:55614292-55614311 | None:intergenic | 45.0% |
| ! | TTTTTGATGCACAGATGGGG+AGG | + | chr4_3:55614571-55614590 | Msa0649010:intron | 45.0% |
| AGGTGAAGTTCTCACTTGGA+AGG | - | chr4_3:55614626-55614645 | None:intergenic | 45.0% | |
| GGATAATCATTCTCAGCTGG+AGG | - | chr4_3:55614767-55614786 | None:intergenic | 45.0% | |
| GAGGGATAATCATTCTCAGC+TGG | - | chr4_3:55614770-55614789 | None:intergenic | 45.0% | |
| ! | TCATCGGTGCTTACTCGTAT+TGG | + | chr4_3:55615212-55615231 | Msa0649010:CDS | 45.0% |
| ! | CATCGGTGCTTACTCGTATT+GGG | + | chr4_3:55615213-55615232 | Msa0649010:CDS | 45.0% |
| ! | ATCGGTGCTTACTCGTATTG+GGG | + | chr4_3:55615214-55615233 | Msa0649010:CDS | 45.0% |
| GGAATATTGGGCACTTTAGC+AGG | + | chr4_3:55615471-55615490 | Msa0649010:CDS | 45.0% | |
| ATATTGGGCACTTTAGCAGG+AGG | + | chr4_3:55615474-55615493 | Msa0649010:CDS | 45.0% | |
| GTAGCCATAGCCATTGATAG+TGG | - | chr4_3:55616544-55616563 | None:intergenic | 45.0% | |
| TTCTTGGGATTGAGGTTCTG+CGG | - | chr4_3:55617044-55617063 | None:intergenic | 45.0% | |
| GGTTAACCTTCTTGGGATTG+AGG | - | chr4_3:55617052-55617071 | None:intergenic | 45.0% | |
| CCTGTCTTCTCTTCAAGCAA+TGG | - | chr4_3:55617105-55617124 | None:intergenic | 45.0% | |
| CCATTGCTTGAAGAGAAGAC+AGG | + | chr4_3:55617102-55617121 | Msa0649010:three_prime_UTR | 45.0% | |
| !! | AAAGTGCTGGACACACGTTT+AGG | + | chr4_3:55617185-55617204 | Msa0649010:three_prime_UTR | 45.0% |
| !! | ATTATTAATTAAATAGAAAA+TGG | - | chr4_3:55609844-55609863 | None:intergenic | 5.0% |
| GAAATGGACAATTGGGTGGC+TGG | - | chr4_3:55609090-55609109 | None:intergenic | 50.0% | |
| GTTGTTGCTGCAGGGTATGA+GGG | - | chr4_3:55609388-55609407 | None:intergenic | 50.0% | |
| TGTTGTTGCTGCAGGGTATG+AGG | - | chr4_3:55609389-55609408 | None:intergenic | 50.0% | |
| CAAAGTGACGAGGATGTGGA+TGG | - | chr4_3:55609696-55609715 | None:intergenic | 50.0% | |
| TCGTCAAAGTGACGAGGATG+TGG | - | chr4_3:55609700-55609719 | None:intergenic | 50.0% | |
| !! | TTGGTGTCGTCAAAGTGACG+AGG | - | chr4_3:55609706-55609725 | None:intergenic | 50.0% |
| CAAGAGAGTTTGGAAGCTGC+GGG | + | chr4_3:55609750-55609769 | Msa0649010:five_prime_UTR | 50.0% | |
| AAGAGAGTTTGGAAGCTGCG+GGG | + | chr4_3:55609751-55609770 | Msa0649010:five_prime_UTR | 50.0% | |
| GGTTCCACAGAAGAAGGGTT+AGG | - | chr4_3:55609986-55610005 | None:intergenic | 50.0% | |
| !! | AGGAATCATGGTGGACTTGG+GGG | - | chr4_3:55610017-55610036 | None:intergenic | 50.0% |
| !! | CAGGAATCATGGTGGACTTG+GGG | - | chr4_3:55610018-55610037 | None:intergenic | 50.0% |
| !! | GCAGGAATCATGGTGGACTT+GGG | - | chr4_3:55610019-55610038 | None:intergenic | 50.0% |
| !! | TGCAGGAATCATGGTGGACT+TGG | - | chr4_3:55610020-55610039 | None:intergenic | 50.0% |
| CGAGGAGCAATAGCTAGCAA+TGG | + | chr4_3:55610403-55610422 | Msa0649010:CDS | 50.0% | |
| ! | GGTATCTGCAAGTCTGGAAC+AGG | + | chr4_3:55610457-55610476 | Msa0649010:CDS | 50.0% |
| CTCTCTACATGCCCAAAAGG+GGG | - | chr4_3:55610741-55610760 | None:intergenic | 50.0% | |
| CTCTCTACATGCCCAAAAGG+GGG | - | chr4_3:55610741-55610760 | None:intergenic | 50.0% | |
| CTCTCTACATGCCCAAAAGG+GGG | - | chr4_3:55610741-55610760 | None:intergenic | 50.0% | |
| TAGCCAATTGCATATCCGCC+TGG | - | chr4_3:55613262-55613281 | None:intergenic | 50.0% | |
| !! | TTGGCGTTATGCGTTTTGGG+TGG | + | chr4_3:55613601-55613620 | Msa0649010:CDS | 50.0% |
| GGCAGTTGAGACAGTTCCTT+TGG | + | chr4_3:55613799-55613818 | Msa0649010:CDS | 50.0% | |
| AGAGATGGATGCCACACACT+TGG | - | chr4_3:55614835-55614854 | None:intergenic | 50.0% | |
| GTGCATCAGTCGCTTAGAGA+TGG | - | chr4_3:55614850-55614869 | None:intergenic | 50.0% | |
| !!! | GTCGGTGGTGCGTTTTGTTT+TGG | + | chr4_3:55615818-55615837 | Msa0649010:CDS | 50.0% |
| !! | AGAGAAGGGAAGTACCTGAG+TGG | - | chr4_3:55615912-55615931 | None:intergenic | 50.0% |
| GAGGCCACTATCAATGGCTA+TGG | + | chr4_3:55616537-55616556 | Msa0649010:CDS | 50.0% | |
| ACCTGGACAACTCCAACAAG+AGG | - | chr4_3:55616604-55616623 | None:intergenic | 50.0% | |
| GCGGTCTTCTCTTCAAGCAA+CGG | - | chr4_3:55617025-55617044 | None:intergenic | 50.0% | |
| GCAGAACCTCAATCCCAAGA+AGG | + | chr4_3:55617043-55617062 | Msa0649010:CDS | 50.0% | |
| ! | CTCTTCAAGCAATGGTGCTG+TGG | - | chr4_3:55617097-55617116 | None:intergenic | 50.0% |
| ! | GGCTGGCGGCTTGAGTTTTT+GGG | - | chr4_3:55609073-55609092 | None:intergenic | 55.0% |
| ! | TGGCTGGCGGCTTGAGTTTT+TGG | - | chr4_3:55609074-55609093 | None:intergenic | 55.0% |
| ATGGACAATTGGGTGGCTGG+CGG | - | chr4_3:55609087-55609106 | None:intergenic | 55.0% | |
| AGAGAGTTTGGAAGCTGCGG+GGG | + | chr4_3:55609752-55609771 | Msa0649010:five_prime_UTR | 55.0% | |
| CATCGTGGGAGTTGCACTGA+TGG | + | chr4_3:55610436-55610455 | Msa0649010:CDS | 55.0% | |
| CTCTCTAGGCTCGTTGGTGT+TGG | + | chr4_3:55612582-55612601 | Msa0649010:intron | 55.0% | |
| ! | TGATAACGCCCCAGCTTCAC+AGG | + | chr4_3:55612644-55612663 | Msa0649010:CDS | 55.0% |
| !! | GCGTTATGCGTTTTGGGTGG+AGG | + | chr4_3:55613604-55613623 | Msa0649010:CDS | 55.0% |
| GACAACTCCAACAAGAGGCG+CGG | - | chr4_3:55616599-55616618 | None:intergenic | 55.0% | |
| GCCTCTTGTTGGAGTTGTCC+AGG | + | chr4_3:55616600-55616619 | Msa0649010:CDS | 55.0% | |
| ! | GATGGCGGCTCTATGCATAC+AGG | + | chr4_3:55616699-55616718 | Msa0649010:intron | 55.0% |
| TTTGGAAGCTGCGGGGGTGA+AGG | + | chr4_3:55609758-55609777 | Msa0649010:five_prime_UTR | 60.0% | |
| GTGGACTTGGGGGCCATGTT+TGG | - | chr4_3:55610007-55610026 | None:intergenic | 60.0% | |
| !! | TAGGCTCGTTGGTGTTGGCG+AGG | + | chr4_3:55612587-55612606 | Msa0649010:intron | 60.0% |
| TCGTATTGGGGCCCCAAAGC+TGG | + | chr4_3:55615226-55615245 | Msa0649010:CDS | 60.0% | |
| GTTCCTTCCGCGCCTCTTGT+TGG | + | chr4_3:55616589-55616608 | Msa0649010:CDS | 60.0% | |
| ! | ACTCCAACAAGAGGCGCGGA+AGG | - | chr4_3:55616595-55616614 | None:intergenic | 60.0% |
| CTCTTCAAGCAACGGCGCAG+TGG | - | chr4_3:55617017-55617036 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 55609008 | 55617547 | 55609008 | ID=Msa0649010;Name=Msa0649010 |
| chr4_3 | mRNA | 55609008 | 55617547 | 55609008 | ID=Msa0649010-mRNA-1;Parent=Msa0649010;Name=Msa0649010-mRNA-1;_AED=0.10;_eAED=0.10;_QI=918|0.93|0.93|1|1|1|16|478|554 |
| chr4_3 | exon | 55609008 | 55610062 | 55609008 | ID=Msa0649010-mRNA-1:exon:14267;Parent=Msa0649010-mRNA-1 |
| chr4_3 | exon | 55610357 | 55610485 | 55610357 | ID=Msa0649010-mRNA-1:exon:14268;Parent=Msa0649010-mRNA-1 |
| chr4_3 | exon | 55611739 | 55611840 | 55611739 | ID=Msa0649010-mRNA-1:exon:14269;Parent=Msa0649010-mRNA-1 |
| chr4_3 | exon | 55612357 | 55612461 | 55612357 | ID=Msa0649010-mRNA-1:exon:14270;Parent=Msa0649010-mRNA-1 |
| chr4_3 | exon | 55612590 | 55612665 | 55612590 | ID=Msa0649010-mRNA-1:exon:14271;Parent=Msa0649010-mRNA-1 |
| chr4_3 | exon | 55613139 | 55613297 | 55613139 | ID=Msa0649010-mRNA-1:exon:14272;Parent=Msa0649010-mRNA-1 |
| chr4_3 | exon | 55613584 | 55613686 | 55613584 | ID=Msa0649010-mRNA-1:exon:14273;Parent=Msa0649010-mRNA-1 |
| chr4_3 | exon | 55613768 | 55613830 | 55613768 | ID=Msa0649010-mRNA-1:exon:14274;Parent=Msa0649010-mRNA-1 |
| chr4_3 | exon | 55614585 | 55614630 | 55614585 | ID=Msa0649010-mRNA-1:exon:14275;Parent=Msa0649010-mRNA-1 |
| chr4_3 | exon | 55614899 | 55614996 | 55614899 | ID=Msa0649010-mRNA-1:exon:14276;Parent=Msa0649010-mRNA-1 |
| chr4_3 | exon | 55615191 | 55615267 | 55615191 | ID=Msa0649010-mRNA-1:exon:14277;Parent=Msa0649010-mRNA-1 |
| chr4_3 | exon | 55615429 | 55615542 | 55615429 | ID=Msa0649010-mRNA-1:exon:14278;Parent=Msa0649010-mRNA-1 |
| chr4_3 | exon | 55615797 | 55615916 | 55615797 | ID=Msa0649010-mRNA-1:exon:14279;Parent=Msa0649010-mRNA-1 |
| chr4_3 | exon | 55616493 | 55616621 | 55616493 | ID=Msa0649010-mRNA-1:exon:14280;Parent=Msa0649010-mRNA-1 |
| chr4_3 | exon | 55616721 | 55616799 | 55616721 | ID=Msa0649010-mRNA-1:exon:14281;Parent=Msa0649010-mRNA-1 |
| chr4_3 | exon | 55616942 | 55617547 | 55616942 | ID=Msa0649010-mRNA-1:exon:14282;Parent=Msa0649010-mRNA-1 |
| chr4_3 | five_prime_UTR | 55609008 | 55609925 | 55609008 | ID=Msa0649010-mRNA-1:five_prime_utr;Parent=Msa0649010-mRNA-1 |
| chr4_3 | CDS | 55609926 | 55610062 | 55609926 | ID=Msa0649010-mRNA-1:cds;Parent=Msa0649010-mRNA-1 |
| chr4_3 | CDS | 55610357 | 55610485 | 55610357 | ID=Msa0649010-mRNA-1:cds;Parent=Msa0649010-mRNA-1 |
| chr4_3 | CDS | 55611739 | 55611840 | 55611739 | ID=Msa0649010-mRNA-1:cds;Parent=Msa0649010-mRNA-1 |
| chr4_3 | CDS | 55612357 | 55612461 | 55612357 | ID=Msa0649010-mRNA-1:cds;Parent=Msa0649010-mRNA-1 |
| chr4_3 | CDS | 55612590 | 55612665 | 55612590 | ID=Msa0649010-mRNA-1:cds;Parent=Msa0649010-mRNA-1 |
| chr4_3 | CDS | 55613139 | 55613297 | 55613139 | ID=Msa0649010-mRNA-1:cds;Parent=Msa0649010-mRNA-1 |
| chr4_3 | CDS | 55613584 | 55613686 | 55613584 | ID=Msa0649010-mRNA-1:cds;Parent=Msa0649010-mRNA-1 |
| chr4_3 | CDS | 55613768 | 55613830 | 55613768 | ID=Msa0649010-mRNA-1:cds;Parent=Msa0649010-mRNA-1 |
| chr4_3 | CDS | 55614585 | 55614630 | 55614585 | ID=Msa0649010-mRNA-1:cds;Parent=Msa0649010-mRNA-1 |
| chr4_3 | CDS | 55614899 | 55614996 | 55614899 | ID=Msa0649010-mRNA-1:cds;Parent=Msa0649010-mRNA-1 |
| chr4_3 | CDS | 55615191 | 55615267 | 55615191 | ID=Msa0649010-mRNA-1:cds;Parent=Msa0649010-mRNA-1 |
| chr4_3 | CDS | 55615429 | 55615542 | 55615429 | ID=Msa0649010-mRNA-1:cds;Parent=Msa0649010-mRNA-1 |
| chr4_3 | CDS | 55615797 | 55615916 | 55615797 | ID=Msa0649010-mRNA-1:cds;Parent=Msa0649010-mRNA-1 |
| chr4_3 | CDS | 55616493 | 55616621 | 55616493 | ID=Msa0649010-mRNA-1:cds;Parent=Msa0649010-mRNA-1 |
| chr4_3 | CDS | 55616721 | 55616799 | 55616721 | ID=Msa0649010-mRNA-1:cds;Parent=Msa0649010-mRNA-1 |
| chr4_3 | CDS | 55616942 | 55617069 | 55616942 | ID=Msa0649010-mRNA-1:cds;Parent=Msa0649010-mRNA-1 |
| chr4_3 | three_prime_UTR | 55617070 | 55617547 | 55617070 | ID=Msa0649010-mRNA-1:three_prime_utr;Parent=Msa0649010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
