AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0691520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691520 MtrunA17_Chr4g0049371 90.827 556 20 2 1 553 1 528 0.0 1006
Msa0691520 MtrunA17_Chr2g0280091 66.860 516 115 6 25 528 1 472 0.0 677
Msa0691520 MtrunA17_Chr5g0411431 64.299 521 147 5 29 543 1 488 0.0 666
Msa0691520 MtrunA17_Chr2g0280101 69.302 215 31 2 60 271 1 183 1.79e-98 297
Msa0691520 MtrunA17_Chr2g0280111 57.143 252 54 3 307 553 13 215 1.55e-88 272
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691520 AT2G22730.3 62.569 545 155 8 1 525 1 516 0.0 661
Msa0691520 AT5G64500.1 62.900 531 131 6 21 544 12 483 0.0 648
Msa0691520 AT2G22730.2 62.477 533 151 8 1 513 1 504 0.0 642
Msa0691520 AT2G22730.6 62.289 533 152 7 1 526 1 491 0.0 639
Msa0691520 AT2G22730.1 62.308 520 147 7 1 513 1 478 0.0 620
Msa0691520 AT5G65687.1 58.350 497 163 8 32 523 12 469 0.0 574
Msa0691520 AT2G22730.7 62.670 442 121 6 107 534 1 412 0.0 542
Msa0691520 AT2G22730.5 58.963 463 141 8 1 443 1 434 3.56e-179 515
Msa0691520 AT2G22730.4 57.421 411 126 7 1 404 1 369 1.12e-150 437

Find 166 sgRNAs with CRISPR-Local

Find 470 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGTCTTTCTTTCAATTTC+TGG 0.022632 4_4:+59683668 Msa0691520:CDS
CACCCTATCAAATGCATTTA+AGG 0.038973 4_4:+59686770 Msa0691520:CDS
GATGCTTCCATTTGCTATTT+TGG 0.067366 4_4:+59684883 Msa0691520:CDS
TGGATGGATTATCCTTTATT+TGG 0.124107 4_4:-59681470 None:intergenic
GTAAACCCCTTTAGACTTAT+TGG 0.127810 4_4:+59683607 Msa0691520:CDS
ACAAACTTGTGATTAGATTT+TGG 0.163860 4_4:+59681195 Msa0691520:five_prime_UTR
AATATTCTGTTTGCATGTTT+TGG 0.190664 4_4:-59686149 None:intergenic
CCATGATTCCTGCAACTTCT+TGG 0.194316 4_4:+59681819 Msa0691520:CDS
AATATAATATTATATATTAT+TGG 0.200897 4_4:+59681695 Msa0691520:five_prime_UTR
TACAATTGTATGCGGAATAT+TGG 0.202232 4_4:+59686707 Msa0691520:CDS
ATTATTAATTAAATAGAAAA+TGG 0.207657 4_4:-59681634 None:intergenic
CTTCTTGGTTTACACCAAAA+AGG 0.250484 4_4:+59681834 Msa0691520:CDS
AAACAGGTTGGAAGTCATTT+TGG 0.253591 4_4:+59684827 Msa0691520:intron
ACTAATGCAGATATGATATT+TGG 0.253804 4_4:+59686678 Msa0691520:CDS
CATCGGTGCTTACTCGTATT+GGG 0.254283 4_4:+59686462 Msa0691520:CDS
GATTAACATGTTGAACTATT+TGG 0.255328 4_4:+59682172 Msa0691520:CDS
GCAGCTGCAATATGGTTTAT+TGG 0.257585 4_4:+59688032 Msa0691520:CDS
ATGAAGCCTTTGCAGTTAAA+AGG 0.258410 4_4:+59684914 Msa0691520:CDS
TTTGAAAGAGATGCAAATAT+TGG 0.266920 4_4:-59683093 None:intergenic
TCATCGGTGCTTACTCGTAT+TGG 0.285278 4_4:+59686461 Msa0691520:CDS
GGCAGTTGAGACAGTTCCTT+TGG 0.285577 4_4:+59685048 Msa0691520:CDS
TAGATTTGATACTAAACTTA+TGG 0.293376 4_4:-59681080 None:intergenic
GAAGGTTTCGGTTCATGTTC+AGG 0.301999 4_4:-59681731 None:intergenic
CAACCTTAAATGCATTTGAT+AGG 0.304914 4_4:-59686773 None:intergenic
TTGGAGTTGGATTGTCAGTT+TGG 0.308512 4_4:+59683626 Msa0691520:CDS
TATATACTATAACCAGCTTT+GGG 0.324548 4_4:-59686487 None:intergenic
GTTCCTTCCGCGCCTCTTGT+TGG 0.325321 4_4:+59687838 Msa0691520:CDS
TCCTTTATTTGGGTAATGTA+TGG 0.328422 4_4:-59681459 None:intergenic
TGCAGGAATCATGGTGGACT+TGG 0.331502 4_4:-59681810 None:intergenic
TGGTTCTAACCTTCTTATAC+TGG 0.334464 4_4:+59684438 Msa0691520:CDS
ATGTTTATGTTTCACCATCT+TGG 0.336990 4_4:+59688734 Msa0691520:three_prime_UTR
TTGGTTGGCGTTATGCGTTT+TGG 0.340113 4_4:+59684846 Msa0691520:CDS
GTTAGAACCATAAAGAAAAT+AGG 0.340881 4_4:-59684425 None:intergenic
ATAGCTAGCAATGGTGTTAA+TGG 0.342905 4_4:+59682206 Msa0691520:CDS
ACAATTGTATGCGGAATATT+GGG 0.345355 4_4:+59686708 Msa0691520:CDS
TATTTAAATTCGCATATGAT+TGG 0.352036 4_4:-59681418 None:intergenic
GGATGGATTATCCTTTATTT+GGG 0.359939 4_4:-59681469 None:intergenic
CACAAGTTTGTTGTTGCTGC+AGG 0.360309 4_4:-59681183 None:intergenic
GCATAAAAGGTTATCAGAAA+TGG 0.366960 4_4:-59680892 None:intergenic
TCCATACATTACCCAAATAA+AGG 0.367294 4_4:+59681458 Msa0691520:five_prime_UTR
TGCTTGAAGATATTACAAAA+AGG 0.368513 4_4:-59688324 None:intergenic
ATATATACTATAACCAGCTT+TGG 0.369080 4_4:-59686488 None:intergenic
CATCAAAAGATATTACAAAA+AGG 0.379177 4_4:-59688557 None:intergenic
GGTTATCAGAAATGGACAAT+TGG 0.381660 4_4:-59680884 None:intergenic
GAGAGATTGAAGAAGAATAA+AGG 0.384408 4_4:-59680837 None:intergenic
GAAGTTGTTGTTGAAGGTTT+CGG 0.387496 4_4:-59681743 None:intergenic
TGTTTATGTTTCACCATCTT+GGG 0.390266 4_4:+59688735 Msa0691520:three_prime_UTR
GGTGTAAACCAAGAAGTTGC+AGG 0.391820 4_4:-59681827 None:intergenic
GGAATATTGGGCACTTTAGC+AGG 0.393766 4_4:+59686720 Msa0691520:CDS
CCAACTCCAATAAGTCTAAA+GGG 0.394466 4_4:-59683613 None:intergenic
CCCTTTAGACTTATTGGAGT+TGG 0.397838 4_4:+59683613 Msa0691520:CDS
ACTGTAGCTATTCATATATT+CGG 0.404341 4_4:+59687811 Msa0691520:CDS
TATGCAATTGGCTATGTATA+TGG 0.405101 4_4:+59684517 Msa0691520:CDS
ATTTAAATTCGCATATGATT+GGG 0.410197 4_4:-59681417 None:intergenic
GCCTCTTGTTGGAGTTGTCC+AGG 0.411072 4_4:+59687849 Msa0691520:CDS
GGTTAACCTTCTTGGGATTG+AGG 0.418224 4_4:-59688303 None:intergenic
CTCTCTAGGCTCGTTGGTGT+TGG 0.418538 4_4:+59683831 Msa0691520:intron
GTTATCAGAAATGGACAATT+GGG 0.424495 4_4:-59680883 None:intergenic
TTCGCATTCAAAAGCATGTA+TGG 0.429280 4_4:+59687094 Msa0691520:CDS
ACAGTTCCTTTGGGAGTTCA+AGG 0.434203 4_4:+59685058 Msa0691520:CDS
CAGGAATCATGGTGGACTTG+GGG 0.437931 4_4:-59681808 None:intergenic
ATGTTTGGTTCCACAGAAGA+AGG 0.439639 4_4:-59681782 None:intergenic
ATTGATAGTGGCCTCAAACT+TGG 0.439716 4_4:-59687778 None:intergenic
AAGTAACAAACCTGTGAAGC+TGG 0.442495 4_4:-59683903 None:intergenic
TACAGGATCATATTAACAAC+TGG 0.443836 4_4:+59687970 Msa0691520:intron
TCCAACTCCAATAAGTCTAA+AGG 0.446511 4_4:-59683614 None:intergenic
CATCATGTATCAAAGGTAGA+AGG 0.453571 4_4:+59688240 Msa0691520:CDS
ACAAATCCCAAAATAGCAAA+TGG 0.454056 4_4:-59684890 None:intergenic
TGTTGTTGCTGCAGGGTATG+AGG 0.454305 4_4:-59681175 None:intergenic
GCAGTTGAGACAGTTCCTTT+GGG 0.456001 4_4:+59685049 Msa0691520:CDS
GAAAGAAAGACCACAGCATA+AGG 0.459452 4_4:-59683659 None:intergenic
GCAGGAATCATGGTGGACTT+GGG 0.464706 4_4:-59681809 None:intergenic
GTTCTTGTTGACAATGATGT+TGG 0.465124 4_4:-59681515 None:intergenic
GGTATCTGCAAGTCTGGAAC+AGG 0.465998 4_4:+59682251 Msa0691520:CDS
ATAAACCATATTGCAGCTGC+TGG 0.467805 4_4:-59688029 None:intergenic
CCAAGAAGTTGCAGGAATCA+TGG 0.472191 4_4:-59681819 None:intergenic
TATATGTTTGTATATGCAAT+CGG 0.472667 4_4:+59688416 Msa0691520:three_prime_UTR
GAAGAAGAAGTTGTTGTTGA+AGG 0.473005 4_4:-59681749 None:intergenic
CCTGTCTTCTCTTCAAGCAA+TGG 0.474940 4_4:-59688356 None:intergenic
AACCTTAAATGCATTTGATA+GGG 0.476183 4_4:-59686772 None:intergenic
AAAGTGCTGGACACACGTTT+AGG 0.477991 4_4:+59688439 Msa0691520:three_prime_UTR
GGTTCCACAGAAGAAGGGTT+AGG 0.479643 4_4:-59681776 None:intergenic
TCGTATTGGGGCCCCAAAGC+TGG 0.481238 4_4:+59686475 Msa0691520:CDS
TTCTTCTGTGGAACCAAACA+TGG 0.481946 4_4:+59681784 Msa0691520:CDS
CTTATTCTCTCTAGGCTCGT+TGG 0.482973 4_4:+59683825 Msa0691520:intron
AAGTTTGAGGCCACTATCAA+TGG 0.484428 4_4:+59687780 Msa0691520:CDS
TGATAACGCCCCAGCTTCAC+AGG 0.486992 4_4:+59683893 Msa0691520:CDS
GAAATGGACAATTGGGTGGC+TGG 0.494832 4_4:-59680876 None:intergenic
GTAGACATAGCCATTGATAG+TGG 0.500369 4_4:-59687790 None:intergenic
CTCTTCAAGCAATGGTGCTG+TGG 0.501555 4_4:-59688348 None:intergenic
CAAGAGAGTTTCGAAGCTGC+GGG 0.504016 4_4:+59681543 Msa0691520:five_prime_UTR
ACTGATGGTATCTGCAAGTC+TGG 0.512923 4_4:+59682245 Msa0691520:CDS
ATACCAGGCGGATATGCAAT+TGG 0.513392 4_4:+59684505 Msa0691520:CDS
AATGAAAAGAAATAATAGAA+TGG 0.519636 4_4:-59680808 None:intergenic
TAAACCTTCTTCTTTCTACC+TGG 0.522437 4_4:+59681588 Msa0691520:five_prime_UTR
AATATTATATATTATTGGAA+TGG 0.524557 4_4:+59681700 Msa0691520:exon
AAATAGAAAATGGAGGTTGA+AGG 0.524772 4_4:-59681624 None:intergenic
GAGTGAGCATCATGTATCAA+AGG 0.526813 4_4:+59688233 Msa0691520:CDS
AGTAACAAACCTGTGAAGCT+GGG 0.527094 4_4:-59683902 None:intergenic
CTCTTCAAGCAACGGCGCAG+TGG 0.528433 4_4:-59688268 None:intergenic
TCGTCAAAGTGACGAGGATG+TGG 0.531526 4_4:-59681490 None:intergenic
ATTAATTAAATAGAAAATGG+AGG 0.532992 4_4:-59681631 None:intergenic
CTCTCATTGACAACATTAGT+CGG 0.535284 4_4:+59687049 Msa0691520:CDS
AATGCAGATATGATATTTGG+AGG 0.536029 4_4:+59686681 Msa0691520:CDS
GAAGGTAACAAAAGCATGCC+AGG 0.539035 4_4:-59681606 None:intergenic
GTTGTTGCTGCAGGGTATGA+GGG 0.539375 4_4:-59681174 None:intergenic
TTACATGCGACATAATGTAA+TGG 0.544368 4_4:-59683692 None:intergenic
AACACCTAACCCTTCTTCTG+TGG 0.544683 4_4:+59681772 Msa0691520:CDS
AGTAGTCAAAGCTAGATGAC+TGG 0.544697 4_4:-59681054 None:intergenic
CATTGCTAGCTATTGCTCCT+CGG 0.549808 4_4:-59682196 None:intergenic
CATGCCAGGTAGAAAGAAGA+AGG 0.550575 4_4:-59681592 None:intergenic
CAAATCTACAACATTGGTCA+TGG 0.550934 4_4:+59681095 Msa0691520:five_prime_UTR
AGGTGAAGTTCTCACTTGGA+AGG 0.555161 4_4:-59685872 None:intergenic
TTCTTGGGATTGAGGTTCTG+CGG 0.555513 4_4:-59688295 None:intergenic
GATACATAGCCAGTATAAGA+AGG 0.558356 4_4:-59684447 None:intergenic
TAGTATCAAATCTACAACAT+TGG 0.559755 4_4:+59681089 Msa0691520:five_prime_UTR
ACTCCAACAAGAGGCGCGGA+AGG 0.560727 4_4:-59687841 None:intergenic
TAGCCAATTGCATATCCGCC+TGG 0.566626 4_4:-59684508 None:intergenic
CAAAGTGACGAGGATGTGGA+TGG 0.567049 4_4:-59681486 None:intergenic
ATCGGTGCTTACTCGTATTG+GGG 0.576291 4_4:+59686463 Msa0691520:CDS
ACAAGAGAGTTTCGAAGCTG+CGG 0.577938 4_4:+59681542 Msa0691520:five_prime_UTR
ACAAGTTTGTTGTTGCTGCA+GGG 0.578232 4_4:-59681182 None:intergenic
TTTACATGATGTGCCCAAGA+TGG 0.580075 4_4:-59688748 None:intergenic
ATAGCATACAACTTTGTCAT+CGG 0.582605 4_4:+59686445 Msa0691520:CDS
CATCGTGGGAGTTGCACTGA+TGG 0.591365 4_4:+59682230 Msa0691520:CDS
TGTTTGGTTCCACAGAAGAA+GGG 0.592863 4_4:-59681781 None:intergenic
TATTTGCATCTCTTTCAAAG+AGG 0.593085 4_4:+59683097 Msa0691520:CDS
AAGGAGAAATAGAAAACGGA+TGG 0.596892 4_4:-59681334 None:intergenic
GCGGTCTTCTCTTCAAGCAA+CGG 0.597251 4_4:-59688276 None:intergenic
TGGAGACATACATAATTCAC+AGG 0.603452 4_4:-59687745 None:intergenic
TATATGCAATCGGAAAGTGC+TGG 0.605386 4_4:+59688426 Msa0691520:three_prime_UTR
ATTGTGTTAAGCCAAGTTTG+AGG 0.607042 4_4:+59687767 Msa0691520:CDS
TAGGCTCGTTGGTGTTGGCG+AGG 0.608838 4_4:+59683836 Msa0691520:intron
ATATACTATAACCAGCTTTG+GGG 0.609629 4_4:-59686486 None:intergenic
GGAGGAATTACAATTGTATG+CGG 0.612364 4_4:+59686699 Msa0691520:CDS
CCATTGCTTGAAGAGAAGAC+AGG 0.614400 4_4:+59688356 Msa0691520:three_prime_UTR
GTAACAAACCTGTGAAGCTG+GGG 0.624884 4_4:-59683901 None:intergenic
ACCTGGACAACTCCAACAAG+AGG 0.626399 4_4:-59687850 None:intergenic
CAACTCCAATAAGTCTAAAG+GGG 0.627956 4_4:-59683612 None:intergenic
CGAGGAGCAATAGCTAGCAA+TGG 0.629263 4_4:+59682197 Msa0691520:CDS
ATAGTACCTTGAACTCCCAA+AGG 0.635654 4_4:-59685064 None:intergenic
TCAAACTTGGCTTAACACAA+TGG 0.635878 4_4:-59687765 None:intergenic
GCAGAACCTCAATCCCAAGA+AGG 0.639701 4_4:+59688297 Msa0691520:CDS
ATATTGGGCACTTTAGCAGG+AGG 0.639746 4_4:+59686723 Msa0691520:CDS
TAGTCATGTAATCAAGAACA+AGG 0.644078 4_4:-59686746 None:intergenic
ACTGTTGCAACCTTATGCTG+TGG 0.644221 4_4:+59683649 Msa0691520:CDS
GGGGCGTTATCATCAATGAA+AGG 0.644741 4_4:-59683882 None:intergenic
ATCAGAAATGGACAATTGGG+TGG 0.646003 4_4:-59680880 None:intergenic
TGGTTATAGTATATATAACA+TGG 0.649082 4_4:+59686495 Msa0691520:CDS
AGGAATCATGGTGGACTTGG+GGG 0.651174 4_4:-59681807 None:intergenic
GACAACTCCAACAAGAGGCG+CGG 0.651802 4_4:-59687845 None:intergenic
ATGGACAATTGGGTGGCTGG+CGG 0.652546 4_4:-59680873 None:intergenic
AATGGTGTTAATGGACATCG+TGG 0.666287 4_4:+59682215 Msa0691520:CDS
AGAGAGTTTCGAAGCTGCGG+GGG 0.670617 4_4:+59681545 Msa0691520:five_prime_UTR
AAGAGAGTTTCGAAGCTGCG+GGG 0.678233 4_4:+59681544 Msa0691520:five_prime_UTR
TGGCTATGTATATGGTGGAG+TGG 0.682859 4_4:+59684525 Msa0691520:CDS
ATGTTGAACTATTTGGACCG+AGG 0.689226 4_4:+59682179 Msa0691520:CDS
GCAATTGGCTATGTATATGG+TGG 0.689730 4_4:+59684520 Msa0691520:CDS
TCATTGACAACATTAGTCGG+TGG 0.705421 4_4:+59687052 Msa0691520:CDS
AGAAGTTGCAGGAATCATGG+TGG 0.707926 4_4:-59681816 None:intergenic
ATGGTGTTAATGGACATCGT+GGG 0.725953 4_4:+59682216 Msa0691520:CDS
AGAGAAGGGAAGTACCTGAG+TGG 0.741711 4_4:-59687158 None:intergenic
AATGTACGAAACAAACTACG+TGG 0.765297 4_4:-59688585 None:intergenic
TTGGTGTCGTCAAAGTGACG+AGG 0.769150 4_4:-59681496 None:intergenic
CTATGTATCAGAAAACAGTG+TGG 0.772625 4_4:+59684461 Msa0691520:CDS
TATTGTTGTTAGAATCAACG+CGG 0.775609 4_4:-59688000 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+AGG - chr4_4:59681355-59681374 None:intergenic 0.0%
!! AATATAATATTATATATTAT+TGG + chr4_4:59681695-59681714 Msa0691520:five_prime_UTR 0.0%
!!! TGTCAAAATAAATTTTTTTA+AGG + chr4_4:59680960-59680979 Msa0691520:five_prime_UTR 10.0%
!! AATATTATATATTATTGGAA+TGG + chr4_4:59681700-59681719 Msa0691520:exon 10.0%
!!! AAAATTTGATTTTTTTGATT+TGG + chr4_4:59681925-59681944 Msa0691520:intron 10.0%
!!! AAATTTGATTTTTTTGATTT+GGG + chr4_4:59681926-59681945 Msa0691520:intron 10.0%
!!! TTGGAATATTTTATATTATA+TGG + chr4_4:59684388-59684407 Msa0691520:CDS 10.0%
!!! TTTTAAATTATATTTCAAGT+GGG - chr4_4:59685129-59685148 None:intergenic 10.0%
!!! ATTTTAAATTATATTTCAAG+TGG - chr4_4:59685130-59685149 None:intergenic 10.0%
!! AATTAAATAAATATGAAGAA+AGG - chr4_4:59686262-59686281 None:intergenic 10.0%
!! ATTGAATATTTAAATAAGTT+AGG + chr4_4:59686880-59686899 Msa0691520:intron 10.0%
!! AATGAAAAGAAATAATAGAA+TGG - chr4_4:59680811-59680830 None:intergenic 15.0%
!!! ATGAAGTTTTTTTTTTTCTT+TGG - chr4_4:59681032-59681051 None:intergenic 15.0%
!!! TTCTACTGAAAAATATTTTT+TGG + chr4_4:59681301-59681320 Msa0691520:five_prime_UTR 15.0%
!! ATTAATTAAATAGAAAATGG+AGG - chr4_4:59681634-59681653 None:intergenic 15.0%
!!! CAATGTTTTTTTATTCAAAA+CGG - chr4_4:59681895-59681914 None:intergenic 15.0%
!!! TTTCCCTAATTTTATTTTAT+TGG + chr4_4:59681990-59682009 Msa0691520:intron 15.0%
!! CAACCAATAAAATAAAATTA+GGG - chr4_4:59681996-59682015 None:intergenic 15.0%
!! ACAACCAATAAAATAAAATT+AGG - chr4_4:59681997-59682016 None:intergenic 15.0%
!!! TAATTTTATTTTATTGGTTG+TGG + chr4_4:59681996-59682015 Msa0691520:intron 15.0%
!!! AATTTTATTTTATTGGTTGT+GGG + chr4_4:59681997-59682016 Msa0691520:intron 15.0%
!!! TTTTTTTTATTATGTTGTGT+AGG + chr4_4:59682129-59682148 Msa0691520:intron 15.0%
!!! TAGTTAAGTTACAAATTTTA+AGG + chr4_4:59682472-59682491 Msa0691520:intron 15.0%
!! TATAATATAGATCACATAAA+TGG - chr4_4:59683550-59683569 None:intergenic 15.0%
!!! AGATTATTTTTCAAGTTTTA+TGG + chr4_4:59683725-59683744 Msa0691520:intron 15.0%
!! AGAGAATAAGAAAAAAATAA+GGG - chr4_4:59683815-59683834 None:intergenic 15.0%
!!! TTTAAATTATATTTCAAGTG+GGG - chr4_4:59685128-59685147 None:intergenic 15.0%
!!! ATTGTTGATAGAAAATTATT+TGG - chr4_4:59685480-59685499 None:intergenic 15.0%
!!! ATAATTTTCTATCAACAATT+AGG + chr4_4:59685481-59685500 Msa0691520:intron 15.0%
!!! AAATAACATAATTTTTCTCT+AGG + chr4_4:59685685-59685704 Msa0691520:intron 15.0%
!!! ATGTTAGGTTTTTATTTTAT+TGG + chr4_4:59685748-59685767 Msa0691520:intron 15.0%
!!! ATTTTTTATGACTCTTATAT+AGG + chr4_4:59686126-59686145 Msa0691520:intron 15.0%
!! GTAAAAAATAGTTCATATAT+AGG - chr4_4:59686363-59686382 None:intergenic 15.0%
!! AATTTAAAAAATTACGAATG+AGG + chr4_4:59687577-59687596 Msa0691520:intron 15.0%
!!! CTGAATTTTATTTGCATAAA+AGG - chr4_4:59680908-59680927 None:intergenic 20.0%
!!! TTATTTTGACAGAAATATAG+AGG - chr4_4:59680951-59680970 None:intergenic 20.0%
!!! AAGTTTTTTTTTTTCTTTGG+TGG - chr4_4:59681029-59681048 None:intergenic 20.0%
!! TAGATTTGATACTAAACTTA+TGG - chr4_4:59681083-59681102 None:intergenic 20.0%
!! AAAAAAGGAGAAATAGAAAA+CGG - chr4_4:59681341-59681360 None:intergenic 20.0%
!! TAAGATATGAACAAAAATGA+AGG + chr4_4:59681377-59681396 Msa0691520:five_prime_UTR 20.0%
!! ATTTAAATTCGCATATGATT+GGG - chr4_4:59681420-59681439 None:intergenic 20.0%
!! TATTTAAATTCGCATATGAT+TGG - chr4_4:59681421-59681440 None:intergenic 20.0%
!!! TTTGATTTGGGTATTTATTT+TGG + chr4_4:59681938-59681957 Msa0691520:intron 20.0%
!!! ATTTTATTTTATTGGTTGTG+GGG + chr4_4:59681998-59682017 Msa0691520:intron 20.0%
!! TTGAATTCTTGAATAAGTTT+AGG + chr4_4:59682327-59682346 Msa0691520:intron 20.0%
!! GTTAAATAAAAAAGCAATCT+TGG + chr4_4:59682442-59682461 Msa0691520:intron 20.0%
!!! TTACAAATTTTAAGGAAGAA+GGG + chr4_4:59682480-59682499 Msa0691520:intron 20.0%
!! TTCAATCATAAACCATATAT+TGG - chr4_4:59682687-59682706 None:intergenic 20.0%
!! TAGATAGATAGTTCAATTTA+TGG + chr4_4:59682787-59682806 Msa0691520:intron 20.0%
!!! TTTATTTAAGGTATCATTGT+GGG - chr4_4:59683159-59683178 None:intergenic 20.0%
!!! ATTTATTTAAGGTATCATTG+TGG - chr4_4:59683160-59683179 None:intergenic 20.0%
!!! ATGTTCAAGGTATTTATTTA+AGG - chr4_4:59683171-59683190 None:intergenic 20.0%
!! TATCATTGATATGAGTATTA+AGG + chr4_4:59683392-59683411 Msa0691520:intron 20.0%
!! ATCATTGATATGAGTATTAA+GGG + chr4_4:59683393-59683412 Msa0691520:intron 20.0%
!! GAAAAAATAAGAATATCAGA+TGG - chr4_4:59683793-59683812 None:intergenic 20.0%
!! GAGAGAATAAGAAAAAAATA+AGG - chr4_4:59683816-59683835 None:intergenic 20.0%
!!! ATTTTTTTCTTATTCTCTCT+AGG + chr4_4:59683817-59683836 Msa0691520:intron 20.0%
!! CTTAGTTTAACTAAAATATG+AGG - chr4_4:59683998-59684017 None:intergenic 20.0%
!! TTAATTATGATACCTTCATT+GGG + chr4_4:59684074-59684093 Msa0691520:intron 20.0%
!!! TTTTATAACTCAAATCACTA+CGG + chr4_4:59684258-59684277 Msa0691520:intron 20.0%
!! GAAAGATAAAAAAGCAAAAT+AGG + chr4_4:59684595-59684614 Msa0691520:intron 20.0%
!! AGATAAGAAATATCTTAAAC+AGG + chr4_4:59684677-59684696 Msa0691520:intron 20.0%
!! GATAAGAAATATCTTAAACA+GGG + chr4_4:59684678-59684697 Msa0691520:intron 20.0%
!! ATAAGAAATATCTTAAACAG+GGG + chr4_4:59684679-59684698 Msa0691520:intron 20.0%
!! CAAGTAAAAAAATATGACAA+GGG - chr4_4:59684767-59684786 None:intergenic 20.0%
!! ACAAGTAAAAAAATATGACA+AGG - chr4_4:59684768-59684787 None:intergenic 20.0%
!!! TTGCATTGATTTATTTATTG+TGG + chr4_4:59684951-59684970 Msa0691520:intron 20.0%
!!! TATTATGTTTTAGACTAGTT+TGG + chr4_4:59685084-59685103 Msa0691520:intron 20.0%
!!! TTAAATTATATTTCAAGTGG+GGG - chr4_4:59685127-59685146 None:intergenic 20.0%
!! AATCTTTCTATATCTGAAAA+AGG + chr4_4:59685401-59685420 Msa0691520:intron 20.0%
!! ATCTTTCTATATCTGAAAAA+GGG + chr4_4:59685402-59685421 Msa0691520:intron 20.0%
!! CATAGACAATATTAAATCTT+AGG - chr4_4:59685623-59685642 None:intergenic 20.0%
!! AAATAAAAACCTAACATTTC+CGG - chr4_4:59685745-59685764 None:intergenic 20.0%
!! AATATTTCTCAGCTATTATA+AGG + chr4_4:59685981-59686000 Msa0691520:intron 20.0%
!!! TAGCAACAAAAGTTTTTAAA+AGG - chr4_4:59686045-59686064 None:intergenic 20.0%
!! TGGTTATAGTATATATAACA+TGG + chr4_4:59686495-59686514 Msa0691520:CDS 20.0%
!! ATCAAATAAAGAACTGAATT+AGG - chr4_4:59686854-59686873 None:intergenic 20.0%
!! ATTTAAATAAGTTAGGTAAC+TGG + chr4_4:59686887-59686906 Msa0691520:intron 20.0%
!!! ACATCTTTTAATATTACTCT+TGG - chr4_4:59687502-59687521 None:intergenic 20.0%
!! GAGTAATATTAAAAGATGTT+AGG + chr4_4:59687503-59687522 Msa0691520:intron 20.0%
!! TACGAATAAAAATAAGTGTT+TGG - chr4_4:59687698-59687717 None:intergenic 20.0%
!!! TTCTTACTATTTTTTCTTTC+AGG + chr4_4:59687720-59687739 Msa0691520:intron 20.0%
!!! TCTTACTATTTTTTCTTTCA+GGG + chr4_4:59687721-59687740 Msa0691520:intron 20.0%
!! TATATGTTTGTATATGCAAT+CGG + chr4_4:59688416-59688435 Msa0691520:three_prime_UTR 20.0%
!! AAAAAGGTTAATAGTATGTT+TGG - chr4_4:59688544-59688563 None:intergenic 20.0%
!! CATCAAAAGATATTACAAAA+AGG - chr4_4:59688560-59688579 None:intergenic 20.0%
!!! CTTTTTGTAATATCTTTTGA+TGG + chr4_4:59688558-59688577 Msa0691520:three_prime_UTR 20.0%
!! TAAGGAGTTACTTTGAAAAA+TGG + chr4_4:59680978-59680997 Msa0691520:five_prime_UTR 25.0%
!! AAGGAGTTACTTTGAAAAAT+GGG + chr4_4:59680979-59680998 Msa0691520:five_prime_UTR 25.0%
! TAGTATCAAATCTACAACAT+TGG + chr4_4:59681089-59681108 Msa0691520:five_prime_UTR 25.0%
!! ACAAACTTGTGATTAGATTT+TGG + chr4_4:59681195-59681214 Msa0691520:five_prime_UTR 25.0%
!!! ATTTGGGTATTTATTTTGGA+GGG + chr4_4:59681942-59681961 Msa0691520:intron 25.0%
!!! TTTTGAATGTTGTTGATGAT+TGG + chr4_4:59682024-59682043 Msa0691520:intron 25.0%
! TAATGCAGGTTAAAATTAAC+TGG + chr4_4:59682055-59682074 Msa0691520:intron 25.0%
! GATTAACATGTTGAACTATT+TGG + chr4_4:59682172-59682191 Msa0691520:CDS 25.0%
!!! GTTACAAATTTTAAGGAAGA+AGG + chr4_4:59682479-59682498 Msa0691520:intron 25.0%
! TATATTACAGTACACTATCA+TGG - chr4_4:59682928-59682947 None:intergenic 25.0%
!!! AACTTGAACAATTTTCAAGA+TGG + chr4_4:59683027-59683046 Msa0691520:CDS 25.0%
! TTTGAAAGAGATGCAAATAT+TGG - chr4_4:59683096-59683115 None:intergenic 25.0%
!! TTATTTGACTTCTTAATGCT+AGG + chr4_4:59683252-59683271 Msa0691520:intron 25.0%
!! ATCATTTTGTGGGATTAATT+TGG + chr4_4:59684023-59684042 Msa0691520:intron 25.0%
!! TCATTTTGTGGGATTAATTT+GGG + chr4_4:59684024-59684043 Msa0691520:intron 25.0%
! GTTAATTATGATACCTTCAT+TGG + chr4_4:59684073-59684092 Msa0691520:intron 25.0%
!! GTGATTTGAGTTATAAAACT+CGG - chr4_4:59684256-59684275 None:intergenic 25.0%
!! AATGGTTTGTAGATATAATC+TGG + chr4_4:59684330-59684349 Msa0691520:intron 25.0%
! GTTAGAACCATAAAGAAAAT+AGG - chr4_4:59684428-59684447 None:intergenic 25.0%
!! ATATTTTACATGTGTATACC+AGG + chr4_4:59684490-59684509 Msa0691520:CDS 25.0%
!! TTTTTATCTTTCCTTACTAC+TGG - chr4_4:59684587-59684606 None:intergenic 25.0%
! TTGAAAGAGAAATATTACAC+TGG - chr4_4:59684624-59684643 None:intergenic 25.0%
! AACATGAAATGAGTTAGTAA+AGG - chr4_4:59685249-59685268 None:intergenic 25.0%
! TTTACTAACTCATTTCATGT+TGG + chr4_4:59685248-59685267 Msa0691520:intron 25.0%
! ATGTTATAGAAAAGAAGGAT+CGG - chr4_4:59685364-59685383 None:intergenic 25.0%
! GAGATATGTTATAGAAAAGA+AGG - chr4_4:59685369-59685388 None:intergenic 25.0%
! TAGAAAGATTACAACAATTC+TGG - chr4_4:59685391-59685410 None:intergenic 25.0%
! TCTTTCTATATCTGAAAAAG+GGG + chr4_4:59685403-59685422 Msa0691520:intron 25.0%
! TTTGAAAAAGGACAAAAGAA+AGG - chr4_4:59685529-59685548 None:intergenic 25.0%
!!! TTTCTTTTGTCCTTTTTCAA+AGG + chr4_4:59685528-59685547 Msa0691520:intron 25.0%
! ACTAACCAAAATTACTTCTT+TGG + chr4_4:59685596-59685615 Msa0691520:intron 25.0%
! ACTATGTAAATCAAGGATAA+AGG - chr4_4:59685895-59685914 None:intergenic 25.0%
! TTTATCCTTGATTTACATAG+TGG + chr4_4:59685894-59685913 Msa0691520:intron 25.0%
! TACATAGTGGTTTCTATATT+TGG + chr4_4:59685907-59685926 Msa0691520:intron 25.0%
!!! AAAGTTTTTAAAAGGATCGA+GGG - chr4_4:59686037-59686056 None:intergenic 25.0%
!!! AAAAGTTTTTAAAAGGATCG+AGG - chr4_4:59686038-59686057 None:intergenic 25.0%
!! AATATTCTGTTTGCATGTTT+TGG - chr4_4:59686152-59686171 None:intergenic 25.0%
!! AGATATGAAAGAACTTTTGT+CGG + chr4_4:59686196-59686215 Msa0691520:CDS 25.0%
! AATAGTTCATATATAGGTAG+AGG - chr4_4:59686357-59686376 None:intergenic 25.0%
! ATGCTATATAACCTGAAAAT+AGG - chr4_4:59686432-59686451 None:intergenic 25.0%
! TATATACTATAACCAGCTTT+GGG - chr4_4:59686490-59686509 None:intergenic 25.0%
! ATATATACTATAACCAGCTT+TGG - chr4_4:59686491-59686510 None:intergenic 25.0%
!! TAAAATTTTATCCACACTCT+TGG - chr4_4:59686543-59686562 None:intergenic 25.0%
! AAACAAGTAACAATGAAAGA+AGG - chr4_4:59686567-59686586 None:intergenic 25.0%
! TTTACCAGAAAATTAGGTAT+CGG - chr4_4:59686605-59686624 None:intergenic 25.0%
! ATTGTGTTTACCAGAAAATT+AGG - chr4_4:59686611-59686630 None:intergenic 25.0%
! ACTAATGCAGATATGATATT+TGG + chr4_4:59686678-59686697 Msa0691520:CDS 25.0%
! AACCTTAAATGCATTTGATA+GGG - chr4_4:59686775-59686794 None:intergenic 25.0%
!! CTTTTAAACTGCTAATTCTA+CGG + chr4_4:59686917-59686936 Msa0691520:intron 25.0%
! TTATATCTTAGATACAACTC+AGG - chr4_4:59686952-59686971 None:intergenic 25.0%
! TATACATGCTTCTCATTTAT+TGG + chr4_4:59687237-59687256 Msa0691520:intron 25.0%
! ATGTAAATCACCTATATAAC+TGG + chr4_4:59687363-59687382 Msa0691520:intron 25.0%
! TGTAAATCACCTATATAACT+GGG + chr4_4:59687364-59687383 Msa0691520:intron 25.0%
! AATTACATTATACTCAGAAG+TGG - chr4_4:59687458-59687477 None:intergenic 25.0%
! ACTGTAGCTATTCATATATT+CGG + chr4_4:59687811-59687830 Msa0691520:CDS 25.0%
! AGTACAATACAATATTCTGA+TGG + chr4_4:59687935-59687954 Msa0691520:intron 25.0%
! TGCTTGAAGATATTACAAAA+AGG - chr4_4:59688327-59688346 None:intergenic 25.0%
GAGAGATTGAAGAAGAATAA+AGG - chr4_4:59680840-59680859 None:intergenic 30.0%
GTTATCAGAAATGGACAATT+GGG - chr4_4:59680886-59680905 None:intergenic 30.0%
GCATAAAAGGTTATCAGAAA+TGG - chr4_4:59680895-59680914 None:intergenic 30.0%
TCCATACATTACCCAAATAA+AGG + chr4_4:59681458-59681477 Msa0691520:five_prime_UTR 30.0%
! TCCTTTATTTGGGTAATGTA+TGG - chr4_4:59681462-59681481 None:intergenic 30.0%
!! GGATGGATTATCCTTTATTT+GGG - chr4_4:59681472-59681491 None:intergenic 30.0%
!! TGGATGGATTATCCTTTATT+TGG - chr4_4:59681473-59681492 None:intergenic 30.0%
AAATAGAAAATGGAGGTTGA+AGG - chr4_4:59681627-59681646 None:intergenic 30.0%
! AAAAGGGTGAATTACCTTTT+TGG - chr4_4:59681851-59681870 None:intergenic 30.0%
ACGGATCTATCAACAAAAAA+GGG - chr4_4:59681876-59681895 None:intergenic 30.0%
AACGGATCTATCAACAAAAA+AGG - chr4_4:59681877-59681896 None:intergenic 30.0%
!!! GATTTGGGTATTTATTTTGG+AGG + chr4_4:59681941-59681960 Msa0691520:intron 30.0%
!! TTTTGGAGGGTTTATAATTC+TGG + chr4_4:59681955-59681974 Msa0691520:intron 30.0%
TTTGGAGGGTTTATAATTCT+GGG + chr4_4:59681956-59681975 Msa0691520:intron 30.0%
AGAGAGAAAACCTATAGATT+CGG + chr4_4:59682549-59682568 Msa0691520:intron 30.0%
AAGGAGAGTAAATCAAATGA+AGG + chr4_4:59682576-59682595 Msa0691520:intron 30.0%
ATGTCCTAGAAAAACTACAA+GGG + chr4_4:59682624-59682643 Msa0691520:intron 30.0%
AAACTACAAGGGAAACTATT+AGG + chr4_4:59682635-59682654 Msa0691520:intron 30.0%
AACTATTAGGAAATACTTGC+AGG + chr4_4:59682648-59682667 Msa0691520:intron 30.0%
! TAGTGAGTTGAACCAATATA+TGG + chr4_4:59682672-59682691 Msa0691520:intron 30.0%
! TAAGCTTTATCCAACTAAGT+GGG - chr4_4:59682742-59682761 None:intergenic 30.0%
! TTAAGCTTTATCCAACTAAG+TGG - chr4_4:59682743-59682762 None:intergenic 30.0%
TATTTGCATCTCTTTCAAAG+AGG + chr4_4:59683097-59683116 Msa0691520:CDS 30.0%
TGATTTGATTCACATGTTCA+AGG - chr4_4:59683184-59683203 None:intergenic 30.0%
TCAAATCAATGACTACTATG+TGG + chr4_4:59683196-59683215 Msa0691520:intron 30.0%
! AGCATGCTTTAAACAACAAT+CGG + chr4_4:59683316-59683335 Msa0691520:intron 30.0%
TTTGTGAATCAAGGACATAT+TGG - chr4_4:59683358-59683377 None:intergenic 30.0%
!! ATTGCTTTGTTTGTGAATCA+AGG - chr4_4:59683367-59683386 None:intergenic 30.0%
ATTGATATGAGTATTAAGGG+TGG + chr4_4:59683396-59683415 Msa0691520:intron 30.0%
TTACATGCGACATAATGTAA+TGG - chr4_4:59683695-59683714 None:intergenic 30.0%
! AAAGCATGAGACAGTTTTTA+GGG - chr4_4:59683930-59683949 None:intergenic 30.0%
! ACTAAGAAGCAATCATTTTG+TGG + chr4_4:59684012-59684031 Msa0691520:intron 30.0%
! CTAAGAAGCAATCATTTTGT+GGG + chr4_4:59684013-59684032 Msa0691520:intron 30.0%
AATTGTGAGACTATTTGCTT+TGG + chr4_4:59684113-59684132 Msa0691520:intron 30.0%
! GCTTTGGTATAATTGCATTT+TGG + chr4_4:59684129-59684148 Msa0691520:intron 30.0%
AGTTATAAAACTCGGCATTT+AGG - chr4_4:59684248-59684267 None:intergenic 30.0%
GCTTCTATTCAACATTTCAA+TGG + chr4_4:59684312-59684331 Msa0691520:intron 30.0%
AAATATTCCAACTGTCAAGA+AGG - chr4_4:59684379-59684398 None:intergenic 30.0%
! TTTGCTGCCTATTTTCTTTA+TGG + chr4_4:59684418-59684437 Msa0691520:CDS 30.0%
TATGCAATTGGCTATGTATA+TGG + chr4_4:59684517-59684536 Msa0691520:CDS 30.0%
TTACTACTGGAACAAAACAA+TGG - chr4_4:59684574-59684593 None:intergenic 30.0%
!! ATTGTTTTGTTCCAGTAGTA+AGG + chr4_4:59684573-59684592 Msa0691520:intron 30.0%
AGCTTGTCACAATAAACTTA+TGG + chr4_4:59684728-59684747 Msa0691520:intron 30.0%
CAATGAAAGGATAAAATCAG+AGG - chr4_4:59684802-59684821 None:intergenic 30.0%
TCCTTTCATTGTTCATAAAC+AGG + chr4_4:59684811-59684830 Msa0691520:intron 30.0%
ACCTGTTTATGAACAATGAA+AGG - chr4_4:59684815-59684834 None:intergenic 30.0%
TTCATTGTTCATAAACAGGT+TGG + chr4_4:59684815-59684834 Msa0691520:intron 30.0%
!!! ATGCTTCCATTTGCTATTTT+GGG + chr4_4:59684884-59684903 Msa0691520:CDS 30.0%
ACAAATCCCAAAATAGCAAA+TGG - chr4_4:59684893-59684912 None:intergenic 30.0%
AGAGATCGAAAACAATATCA+AGG - chr4_4:59684979-59684998 None:intergenic 30.0%
TTTCGATCTCTAAACTACTT+TGG + chr4_4:59684988-59685007 Msa0691520:intron 30.0%
TGTGTAAATATAGATTGGTG+TGG - chr4_4:59685193-59685212 None:intergenic 30.0%
CGAGTTGTGTAAATATAGAT+TGG - chr4_4:59685198-59685217 None:intergenic 30.0%
AATAAACTCAACAAGCACAA+AGG - chr4_4:59685290-59685309 None:intergenic 30.0%
AAAAGGACAAAAGAAAGGAA+CGG - chr4_4:59685524-59685543 None:intergenic 30.0%
! TAGGACCAAAGAAGTAATTT+TGG - chr4_4:59685604-59685623 None:intergenic 30.0%
! TTATTTTCCCAGACATGAAA+GGG - chr4_4:59685671-59685690 None:intergenic 30.0%
TTTCAATTACCGGAAATGTT+AGG + chr4_4:59685733-59685752 Msa0691520:intron 30.0%
!!! TATCTTTTTTGATGCACAGA+TGG + chr4_4:59685815-59685834 Msa0691520:intron 30.0%
!!! ATCTTTTTTGATGCACAGAT+GGG + chr4_4:59685816-59685835 Msa0691520:intron 30.0%
AGAAACCACTATGTAAATCA+AGG - chr4_4:59685902-59685921 None:intergenic 30.0%
AATAGCTGAGAAATATTGAC+AGG - chr4_4:59685978-59685997 None:intergenic 30.0%
! GTTACTGAATTCCTATTTTC+AGG + chr4_4:59686418-59686437 Msa0691520:intron 30.0%
ATAGCATACAACTTTGTCAT+CGG + chr4_4:59686445-59686464 Msa0691520:CDS 30.0%
ATATACTATAACCAGCTTTG+GGG - chr4_4:59686489-59686508 None:intergenic 30.0%
TTACCAGAAAATTAGGTATC+GGG - chr4_4:59686604-59686623 None:intergenic 30.0%
CTGGTAAACACAATGTTAAT+CGG + chr4_4:59686617-59686636 Msa0691520:intron 30.0%
AATGCAGATATGATATTTGG+AGG + chr4_4:59686681-59686700 Msa0691520:CDS 30.0%
TACAATTGTATGCGGAATAT+TGG + chr4_4:59686707-59686726 Msa0691520:CDS 30.0%
ACAATTGTATGCGGAATATT+GGG + chr4_4:59686708-59686727 Msa0691520:CDS 30.0%
TAGTCATGTAATCAAGAACA+AGG - chr4_4:59686749-59686768 None:intergenic 30.0%
CAACCTTAAATGCATTTGAT+AGG - chr4_4:59686776-59686795 None:intergenic 30.0%
! CTATCAAATGCATTTAAGGT+TGG + chr4_4:59686774-59686793 Msa0691520:intron 30.0%
! AGTTTTCTTCACATAGAGAA+GGG - chr4_4:59687175-59687194 None:intergenic 30.0%
! AAGTTTTCTTCACATAGAGA+AGG - chr4_4:59687176-59687195 None:intergenic 30.0%
! GAGAAGCATGTATATAGTTT+AGG - chr4_4:59687231-59687250 None:intergenic 30.0%
GATTAACTTCCCAGTTATAT+AGG - chr4_4:59687376-59687395 None:intergenic 30.0%
ACAATACAATATTCTGATGG+CGG + chr4_4:59687938-59687957 Msa0691520:intron 30.0%
TACAGGATCATATTAACAAC+TGG + chr4_4:59687970-59687989 Msa0691520:intron 30.0%
! TATTGTTGTTAGAATCAACG+CGG - chr4_4:59688003-59688022 None:intergenic 30.0%
TGTAGCATCATATAATAGCA+TGG + chr4_4:59688117-59688136 Msa0691520:intron 30.0%
ACTATGCAAAAATATTCCTG+TGG - chr4_4:59688193-59688212 None:intergenic 30.0%
!! AGGAATATTTTTGCATAGTG+TGG + chr4_4:59688194-59688213 Msa0691520:intron 30.0%
ACAAAAAGGTTAACCTTCTT+GGG - chr4_4:59688313-59688332 None:intergenic 30.0%
TACAAAAAGGTTAACCTTCT+TGG - chr4_4:59688314-59688333 None:intergenic 30.0%
TCAGAAAAAACACGTCAAAA+AGG + chr4_4:59688483-59688502 Msa0691520:three_prime_UTR 30.0%
! AAAACACGTCAAAAAGGTTT+TGG + chr4_4:59688489-59688508 Msa0691520:three_prime_UTR 30.0%
! AAACACGTCAAAAAGGTTTT+GGG + chr4_4:59688490-59688509 Msa0691520:three_prime_UTR 30.0%
!! ATCTTTTTGCTTTTGCTTAG+TGG + chr4_4:59688670-59688689 Msa0691520:three_prime_UTR 30.0%
ATGTTTATGTTTCACCATCT+TGG + chr4_4:59688734-59688753 Msa0691520:three_prime_UTR 30.0%
TGTTTATGTTTCACCATCTT+GGG + chr4_4:59688735-59688754 Msa0691520:three_prime_UTR 30.0%
GGTTATCAGAAATGGACAAT+TGG - chr4_4:59680887-59680906 None:intergenic 35.0%
CAAATCTACAACATTGGTCA+TGG + chr4_4:59681095-59681114 Msa0691520:five_prime_UTR 35.0%
AAGGAGAAATAGAAAACGGA+TGG - chr4_4:59681337-59681356 None:intergenic 35.0%
GTTCTTGTTGACAATGATGT+TGG - chr4_4:59681518-59681537 None:intergenic 35.0%
TAAACCTTCTTCTTTCTACC+TGG + chr4_4:59681588-59681607 Msa0691520:five_prime_UTR 35.0%
! GAAGTTGTTGTTGAAGGTTT+CGG - chr4_4:59681746-59681765 None:intergenic 35.0%
! GAAGAAGAAGTTGTTGTTGA+AGG - chr4_4:59681752-59681771 None:intergenic 35.0%
CTTCTTGGTTTACACCAAAA+AGG + chr4_4:59681834-59681853 Msa0691520:CDS 35.0%
TCAACAAAAAAGGGGGAAAA+GGG - chr4_4:59681867-59681886 None:intergenic 35.0%
ATCAACAAAAAAGGGGGAAA+AGG - chr4_4:59681868-59681887 None:intergenic 35.0%
GGATCTATCAACAAAAAAGG+GGG - chr4_4:59681874-59681893 None:intergenic 35.0%
CGGATCTATCAACAAAAAAG+GGG - chr4_4:59681875-59681894 None:intergenic 35.0%
GATTGGTATTTGACTAATGC+AGG + chr4_4:59682041-59682060 Msa0691520:intron 35.0%
! ATAGCTAGCAATGGTGTTAA+TGG + chr4_4:59682206-59682225 Msa0691520:CDS 35.0%
! GGGAATTGAGATTGAGATTT+TGG + chr4_4:59682500-59682519 Msa0691520:intron 35.0%
! AACCTATAGATTCGGTAGTA+AGG + chr4_4:59682557-59682576 Msa0691520:intron 35.0%
GATGTCCTAGAAAAACTACA+AGG + chr4_4:59682623-59682642 Msa0691520:intron 35.0%
! GTTTCCCTTGTAGTTTTTCT+AGG - chr4_4:59682631-59682650 None:intergenic 35.0%
!! ATTGTTTTGTACTTCCGTGT+AGG + chr4_4:59682995-59683014 Msa0691520:intron 35.0%
!! TTGTTTTGTACTTCCGTGTA+GGG + chr4_4:59682996-59683015 Msa0691520:intron 35.0%
!! AGTTCTCTCATCTGCTTTTA+TGG + chr4_4:59683050-59683069 Msa0691520:CDS 35.0%
TAACCCAATACTGAGAACTT+TGG + chr4_4:59683497-59683516 Msa0691520:intron 35.0%
GGGTTTACACTGCAAAATAT+AGG - chr4_4:59683595-59683614 None:intergenic 35.0%
GTAAACCCCTTTAGACTTAT+TGG + chr4_4:59683607-59683626 Msa0691520:CDS 35.0%
CAACTCCAATAAGTCTAAAG+GGG - chr4_4:59683615-59683634 None:intergenic 35.0%
CCAACTCCAATAAGTCTAAA+GGG - chr4_4:59683616-59683635 None:intergenic 35.0%
TCCAACTCCAATAAGTCTAA+AGG - chr4_4:59683617-59683636 None:intergenic 35.0%
GTGGTCTTTCTTTCAATTTC+TGG + chr4_4:59683668-59683687 Msa0691520:CDS 35.0%
!! GAAAGCATGAGACAGTTTTT+AGG - chr4_4:59683931-59683950 None:intergenic 35.0%
AATATGAGCACAATAGACGA+TGG - chr4_4:59683971-59683990 None:intergenic 35.0%
CGTCTATTGTGCTCATATTT+AGG + chr4_4:59683972-59683991 Msa0691520:intron 35.0%
ACGTATTAATGACCCAATGA+AGG - chr4_4:59684089-59684108 None:intergenic 35.0%
CTCAAATCACTACGGAAATT+TGG + chr4_4:59684266-59684285 Msa0691520:intron 35.0%
TTTCTTACCTTCTTGACAGT+TGG + chr4_4:59684369-59684388 Msa0691520:intron 35.0%
!! TGGTTCTAACCTTCTTATAC+TGG + chr4_4:59684438-59684457 Msa0691520:CDS 35.0%
GATACATAGCCAGTATAAGA+AGG - chr4_4:59684450-59684469 None:intergenic 35.0%
CTATGTATCAGAAAACAGTG+TGG + chr4_4:59684461-59684480 Msa0691520:CDS 35.0%
! TTTTACATGTGTATACCAGG+CGG + chr4_4:59684493-59684512 Msa0691520:CDS 35.0%
AGAAATATCTTAAACAGGGG+AGG + chr4_4:59684682-59684701 Msa0691520:intron 35.0%
!! AAACAGGTTGGAAGTCATTT+TGG + chr4_4:59684827-59684846 Msa0691520:intron 35.0%
!!! GATGCTTCCATTTGCTATTT+TGG + chr4_4:59684883-59684902 Msa0691520:CDS 35.0%
ATGAAGCCTTTGCAGTTAAA+AGG + chr4_4:59684914-59684933 Msa0691520:CDS 35.0%
CTCTAAACTACTTTGGATAC+AGG + chr4_4:59684995-59685014 Msa0691520:intron 35.0%
!!! GCACATTTTTTGAATCAGCA+GGG - chr4_4:59685027-59685046 None:intergenic 35.0%
!!! AGCACATTTTTTGAATCAGC+AGG - chr4_4:59685028-59685047 None:intergenic 35.0%
!! TGCTGATTCAAAAAATGTGC+TGG + chr4_4:59685027-59685046 Msa0691520:CDS 35.0%
!!! TGTTTTAGACTAGTTTGGTG+AGG + chr4_4:59685089-59685108 Msa0691520:intron 35.0%
TAAAAAAAGCAATCCAGCAC+AGG - chr4_4:59685332-59685351 None:intergenic 35.0%
TCTCAACAATCAGGGTTTAA+TGG - chr4_4:59685450-59685469 None:intergenic 35.0%
GAGAACATTCTCAACAATCA+GGG - chr4_4:59685458-59685477 None:intergenic 35.0%
AATATTTCCCCTTTCATGTC+TGG + chr4_4:59685660-59685679 Msa0691520:intron 35.0%
ATATTTCCCCTTTCATGTCT+GGG + chr4_4:59685661-59685680 Msa0691520:intron 35.0%
! TATTTTCCCAGACATGAAAG+GGG - chr4_4:59685670-59685689 None:intergenic 35.0%
!! GTTATTTTCCCAGACATGAA+AGG - chr4_4:59685672-59685691 None:intergenic 35.0%
CACCTATGTCTTTCAATTAC+CGG + chr4_4:59685723-59685742 Msa0691520:intron 35.0%
TTCCGGTAATTGAAAGACAT+AGG - chr4_4:59685728-59685747 None:intergenic 35.0%
!!! TCTTTTTTGATGCACAGATG+GGG + chr4_4:59685817-59685836 Msa0691520:intron 35.0%
ATAAAGGTGAAGTTCTCACT+TGG - chr4_4:59685879-59685898 None:intergenic 35.0%
TTATTGTATCTCCAAGTGTG+TGG + chr4_4:59686070-59686089 Msa0691520:intron 35.0%
! GAAAGAACTTTTGTCGGATA+AGG + chr4_4:59686202-59686221 Msa0691520:CDS 35.0%
CATATATAGGTAGAGGAGAA+TGG - chr4_4:59686350-59686369 None:intergenic 35.0%
GGAGGAATTACAATTGTATG+CGG + chr4_4:59686699-59686718 Msa0691520:CDS 35.0%
CACCCTATCAAATGCATTTA+AGG + chr4_4:59686770-59686789 Msa0691520:CDS 35.0%
TTCAAGGTAACTAGTTAGGA+TGG - chr4_4:59687016-59687035 None:intergenic 35.0%
AGAGTTCAAGGTAACTAGTT+AGG - chr4_4:59687020-59687039 None:intergenic 35.0%
CTCTCATTGACAACATTAGT+CGG + chr4_4:59687049-59687068 Msa0691520:CDS 35.0%
! ATACATGCTTTTGAATGCGA+AGG - chr4_4:59687095-59687114 None:intergenic 35.0%
! TTCGCATTCAAAAGCATGTA+TGG + chr4_4:59687094-59687113 Msa0691520:CDS 35.0%
!! TTCCTAGCTCTTTTTGCTAT+TGG + chr4_4:59687118-59687137 Msa0691520:CDS 35.0%
TCCAAACCTAATGTTGTGTT+TGG + chr4_4:59687409-59687428 Msa0691520:intron 35.0%
TCCAAACACAACATTAGGTT+TGG - chr4_4:59687413-59687432 None:intergenic 35.0%
AGTCATCCAAACACAACATT+AGG - chr4_4:59687418-59687437 None:intergenic 35.0%
TACGAATGAGGACAAAATTG+AGG + chr4_4:59687589-59687608 Msa0691520:intron 35.0%
GATGATGTAGAATGTAGAGA+TGG + chr4_4:59687667-59687686 Msa0691520:intron 35.0%
TGGAGACATACATAATTCAC+AGG - chr4_4:59687748-59687767 None:intergenic 35.0%
TCAAACTTGGCTTAACACAA+TGG - chr4_4:59687768-59687787 None:intergenic 35.0%
ATTGTGTTAAGCCAAGTTTG+AGG + chr4_4:59687767-59687786 Msa0691520:CDS 35.0%
! TTGTCCAGGTTAGCATTTTT+AGG + chr4_4:59687863-59687882 Msa0691520:intron 35.0%
TACACCTAAAAATGCTAACC+TGG - chr4_4:59687870-59687889 None:intergenic 35.0%
GGTTTATTGGTAAGTCATCA+TGG + chr4_4:59688045-59688064 Msa0691520:intron 35.0%
TCATGATACTTTGTTACCAC+AGG + chr4_4:59688174-59688193 Msa0691520:intron 35.0%
CATCATGTATCAAAGGTAGA+AGG + chr4_4:59688240-59688259 Msa0691520:CDS 35.0%
AATGTACGAAACAAACTACG+TGG - chr4_4:59688588-59688607 None:intergenic 35.0%
!! TTGCTTTTGCTTAGTGGAAA+TGG + chr4_4:59688676-59688695 Msa0691520:three_prime_UTR 35.0%
ATCAGAAATGGACAATTGGG+TGG - chr4_4:59680883-59680902 None:intergenic 40.0%
AGTAGTCAAAGCTAGATGAC+TGG - chr4_4:59681057-59681076 None:intergenic 40.0%
!! ACAAGTTTGTTGTTGCTGCA+GGG - chr4_4:59681185-59681204 None:intergenic 40.0%
! TGTTTGGTTCCACAGAAGAA+GGG - chr4_4:59681784-59681803 None:intergenic 40.0%
! ATGTTTGGTTCCACAGAAGA+AGG - chr4_4:59681785-59681804 None:intergenic 40.0%
TTCTTCTGTGGAACCAAACA+TGG + chr4_4:59681784-59681803 Msa0691520:CDS 40.0%
ATGTTGAACTATTTGGACCG+AGG + chr4_4:59682179-59682198 Msa0691520:CDS 40.0%
! AATGGTGTTAATGGACATCG+TGG + chr4_4:59682215-59682234 Msa0691520:CDS 40.0%
! ATGGTGTTAATGGACATCGT+GGG + chr4_4:59682216-59682235 Msa0691520:CDS 40.0%
ACACAGAGTCATGAATGACA+TGG + chr4_4:59682387-59682406 Msa0691520:intron 40.0%
TTCTCTCTACATGCCCAAAA+GGG - chr4_4:59682537-59682556 None:intergenic 40.0%
TTTCTCTCTACATGCCCAAA+AGG - chr4_4:59682538-59682557 None:intergenic 40.0%
CTCCTTACTACCGAATCTAT+AGG - chr4_4:59682562-59682581 None:intergenic 40.0%
AAGGATAGTAAGATCACGAG+AGG + chr4_4:59682595-59682614 Msa0691520:intron 40.0%
TGTAGATGATCCCACTTAGT+TGG + chr4_4:59682729-59682748 Msa0691520:intron 40.0%
CTATCATGGTATGAAACACG+TGG - chr4_4:59682914-59682933 None:intergenic 40.0%
! TGTTTTGTACTTCCGTGTAG+GGG + chr4_4:59682997-59683016 Msa0691520:intron 40.0%
AAGTTAAAATCCCCCCTACA+CGG - chr4_4:59683012-59683031 None:intergenic 40.0%
!! CTCTCATCTGCTTTTATGGT+TGG + chr4_4:59683054-59683073 Msa0691520:CDS 40.0%
ATGACTACTATGTGGCTCAT+TGG + chr4_4:59683204-59683223 Msa0691520:intron 40.0%
TGACTACTATGTGGCTCATT+GGG + chr4_4:59683205-59683224 Msa0691520:intron 40.0%
GGTCCAAAGTTCTCAGTATT+GGG - chr4_4:59683503-59683522 None:intergenic 40.0%
AGGTCCAAAGTTCTCAGTAT+TGG - chr4_4:59683504-59683523 None:intergenic 40.0%
CCCTTTAGACTTATTGGAGT+TGG + chr4_4:59683613-59683632 Msa0691520:CDS 40.0%
TTGGAGTTGGATTGTCAGTT+TGG + chr4_4:59683626-59683645 Msa0691520:CDS 40.0%
GAAAGAAAGACCACAGCATA+AGG - chr4_4:59683662-59683681 None:intergenic 40.0%
AGTAACAAACCTGTGAAGCT+GGG - chr4_4:59683905-59683924 None:intergenic 40.0%
AAGTAACAAACCTGTGAAGC+TGG - chr4_4:59683906-59683925 None:intergenic 40.0%
GCAATTGGCTATGTATATGG+TGG + chr4_4:59684520-59684539 Msa0691520:CDS 40.0%
GGGGAGGTAATTAAAAGAGT+AGG + chr4_4:59684698-59684717 Msa0691520:intron 40.0%
!! AGGTTGGAAGTCATTTTGGT+TGG + chr4_4:59684831-59684850 Msa0691520:intron 40.0%
!! TGTGCACCTTTTAACTGCAA+AGG - chr4_4:59684923-59684942 None:intergenic 40.0%
ATAGTACCTTGAACTCCCAA+AGG - chr4_4:59685067-59685086 None:intergenic 40.0%
! GTGCATGTTGTGTTACTACA+TGG + chr4_4:59685159-59685178 Msa0691520:intron 40.0%
CAGCACAGGAGAAAAAAATC+AGG - chr4_4:59685318-59685337 None:intergenic 40.0%
!!! CTGATTTTTTTCTCCTGTGC+TGG + chr4_4:59685316-59685335 Msa0691520:intron 40.0%
GGAGAACATTCTCAACAATC+AGG - chr4_4:59685459-59685478 None:intergenic 40.0%
!!! TCCTTTTTCAAAGGCAAGTG+AGG + chr4_4:59685537-59685556 Msa0691520:intron 40.0%
!!! CCTTTTTCAAAGGCAAGTGA+GGG + chr4_4:59685538-59685557 Msa0691520:intron 40.0%
GATAATCATTCTCAGCTGGA+GGG - chr4_4:59686015-59686034 None:intergenic 40.0%
! GTTTTTGTCGTCAACGTTCT+AGG + chr4_4:59686224-59686243 Msa0691520:CDS 40.0%
TTCATCTAATGCCAAGAGTG+TGG + chr4_4:59686529-59686548 Msa0691520:intron 40.0%
! ATGCCCGATACCTAATTTTC+TGG + chr4_4:59686598-59686617 Msa0691520:intron 40.0%
TTTACAGGAGAGACTTAGGA+AGG - chr4_4:59686983-59687002 None:intergenic 40.0%
GGAATTTACAGGAGAGACTT+AGG - chr4_4:59686987-59687006 None:intergenic 40.0%
GATGGAGCAATGGAATTTAC+AGG - chr4_4:59686998-59687017 None:intergenic 40.0%
AACTAGTTAGGATGGAGCAA+TGG - chr4_4:59687008-59687027 None:intergenic 40.0%
GAGAAGCTGAAAAGAGTTCA+AGG - chr4_4:59687032-59687051 None:intergenic 40.0%
TCATTGACAACATTAGTCGG+TGG + chr4_4:59687052-59687071 Msa0691520:CDS 40.0%
CACCAATAGCAAAAAGAGCT+AGG - chr4_4:59687123-59687142 None:intergenic 40.0%
!!! ACTACTTGTTTTTGCCACTC+AGG + chr4_4:59687144-59687163 Msa0691520:CDS 40.0%
!! ATTGATAGTGGCCTCAAACT+TGG - chr4_4:59687781-59687800 None:intergenic 40.0%
! AAGTTTGAGGCCACTATCAA+TGG + chr4_4:59687780-59687799 Msa0691520:CDS 40.0%
GTAGACATAGCCATTGATAG+TGG - chr4_4:59687793-59687812 None:intergenic 40.0%
! TTTTTCCAGCAGCTGCAATA+TGG + chr4_4:59688024-59688043 Msa0691520:CDS 40.0%
ATAAACCATATTGCAGCTGC+TGG - chr4_4:59688032-59688051 None:intergenic 40.0%
GCAGCTGCAATATGGTTTAT+TGG + chr4_4:59688032-59688051 Msa0691520:CDS 40.0%
GAGTGAGCATCATGTATCAA+AGG + chr4_4:59688233-59688252 Msa0691520:CDS 40.0%
! TATATGCAATCGGAAAGTGC+TGG + chr4_4:59688426-59688445 Msa0691520:three_prime_UTR 40.0%
TTTACATGATGTGCCCAAGA+TGG - chr4_4:59688751-59688770 None:intergenic 40.0%
!! CACAAGTTTGTTGTTGCTGC+AGG - chr4_4:59681186-59681205 None:intergenic 45.0%
ACAAGAGAGTTTCGAAGCTG+CGG + chr4_4:59681542-59681561 Msa0691520:five_prime_UTR 45.0%
CATGCCAGGTAGAAAGAAGA+AGG - chr4_4:59681595-59681614 None:intergenic 45.0%
! GAAGGTAACAAAAGCATGCC+AGG - chr4_4:59681609-59681628 None:intergenic 45.0%
GAAGGTTTCGGTTCATGTTC+AGG - chr4_4:59681734-59681753 None:intergenic 45.0%
AACACCTAACCCTTCTTCTG+TGG + chr4_4:59681772-59681791 Msa0691520:CDS 45.0%
AGAAGTTGCAGGAATCATGG+TGG - chr4_4:59681819-59681838 None:intergenic 45.0%
CCAAGAAGTTGCAGGAATCA+TGG - chr4_4:59681822-59681841 None:intergenic 45.0%
CCATGATTCCTGCAACTTCT+TGG + chr4_4:59681819-59681838 Msa0691520:CDS 45.0%
GGTGTAAACCAAGAAGTTGC+AGG - chr4_4:59681830-59681849 None:intergenic 45.0%
CATTGCTAGCTATTGCTCCT+CGG - chr4_4:59682199-59682218 None:intergenic 45.0%
ACTGATGGTATCTGCAAGTC+TGG + chr4_4:59682245-59682264 Msa0691520:CDS 45.0%
! TGGTGATAAATGCCCCCTTT+TGG + chr4_4:59682520-59682539 Msa0691520:intron 45.0%
! GGTGATAAATGCCCCCTTTT+GGG + chr4_4:59682521-59682540 Msa0691520:intron 45.0%
TCTCTCTACATGCCCAAAAG+GGG - chr4_4:59682536-59682555 None:intergenic 45.0%
AGTAAGATCACGAGAGGCAA+AGG + chr4_4:59682601-59682620 Msa0691520:intron 45.0%
ACACGTGGAAAAGCTCATAC+AGG - chr4_4:59682899-59682918 None:intergenic 45.0%
! GTTTTGTACTTCCGTGTAGG+GGG + chr4_4:59682998-59683017 Msa0691520:intron 45.0%
! TTTTGTACTTCCGTGTAGGG+GGG + chr4_4:59682999-59683018 Msa0691520:intron 45.0%
GTGCGTGTACTTGAAAGAGA+AGG - chr4_4:59683524-59683543 None:intergenic 45.0%
ACTGTTGCAACCTTATGCTG+TGG + chr4_4:59683649-59683668 Msa0691520:CDS 45.0%
CTTATTCTCTCTAGGCTCGT+TGG + chr4_4:59683825-59683844 Msa0691520:intron 45.0%
! GGGGCGTTATCATCAATGAA+AGG - chr4_4:59683885-59683904 None:intergenic 45.0%
GTAACAAACCTGTGAAGCTG+GGG - chr4_4:59683904-59683923 None:intergenic 45.0%
ATACCAGGCGGATATGCAAT+TGG + chr4_4:59684505-59684524 Msa0691520:CDS 45.0%
! TGGCTATGTATATGGTGGAG+TGG + chr4_4:59684525-59684544 Msa0691520:CDS 45.0%
! TTGGTTGGCGTTATGCGTTT+TGG + chr4_4:59684846-59684865 Msa0691520:CDS 45.0%
! TGGTTGGCGTTATGCGTTTT+GGG + chr4_4:59684847-59684866 Msa0691520:CDS 45.0%
GCAGTTGAGACAGTTCCTTT+GGG + chr4_4:59685049-59685068 Msa0691520:CDS 45.0%
! ACAGTTCCTTTGGGAGTTCA+AGG + chr4_4:59685058-59685077 Msa0691520:CDS 45.0%
! CCCTCACTTGCCTTTGAAAA+AGG - chr4_4:59685541-59685560 None:intergenic 45.0%
! TTTTTGATGCACAGATGGGG+AGG + chr4_4:59685820-59685839 Msa0691520:intron 45.0%
AGGTGAAGTTCTCACTTGGA+AGG - chr4_4:59685875-59685894 None:intergenic 45.0%
GGATAATCATTCTCAGCTGG+AGG - chr4_4:59686016-59686035 None:intergenic 45.0%
GAGGGATAATCATTCTCAGC+TGG - chr4_4:59686019-59686038 None:intergenic 45.0%
GTGCATCAGTCACTTAGAGA+TGG - chr4_4:59686099-59686118 None:intergenic 45.0%
! TCATCGGTGCTTACTCGTAT+TGG + chr4_4:59686461-59686480 Msa0691520:CDS 45.0%
! CATCGGTGCTTACTCGTATT+GGG + chr4_4:59686462-59686481 Msa0691520:CDS 45.0%
! ATCGGTGCTTACTCGTATTG+GGG + chr4_4:59686463-59686482 Msa0691520:CDS 45.0%
GGAATATTGGGCACTTTAGC+AGG + chr4_4:59686720-59686739 Msa0691520:CDS 45.0%
ATATTGGGCACTTTAGCAGG+AGG + chr4_4:59686723-59686742 Msa0691520:CDS 45.0%
TTCTTGGGATTGAGGTTCTG+CGG - chr4_4:59688298-59688317 None:intergenic 45.0%
GGTTAACCTTCTTGGGATTG+AGG - chr4_4:59688306-59688325 None:intergenic 45.0%
CCTGTCTTCTCTTCAAGCAA+TGG - chr4_4:59688359-59688378 None:intergenic 45.0%
CCATTGCTTGAAGAGAAGAC+AGG + chr4_4:59688356-59688375 Msa0691520:three_prime_UTR 45.0%
!! AAAGTGCTGGACACACGTTT+AGG + chr4_4:59688439-59688458 Msa0691520:three_prime_UTR 45.0%
!! ATTATTAATTAAATAGAAAA+TGG - chr4_4:59681637-59681656 None:intergenic 5.0%
GAAATGGACAATTGGGTGGC+TGG - chr4_4:59680879-59680898 None:intergenic 50.0%
GTTGTTGCTGCAGGGTATGA+GGG - chr4_4:59681177-59681196 None:intergenic 50.0%
TGTTGTTGCTGCAGGGTATG+AGG - chr4_4:59681178-59681197 None:intergenic 50.0%
CAAAGTGACGAGGATGTGGA+TGG - chr4_4:59681489-59681508 None:intergenic 50.0%
TCGTCAAAGTGACGAGGATG+TGG - chr4_4:59681493-59681512 None:intergenic 50.0%
!! TTGGTGTCGTCAAAGTGACG+AGG - chr4_4:59681499-59681518 None:intergenic 50.0%
CAAGAGAGTTTCGAAGCTGC+GGG + chr4_4:59681543-59681562 Msa0691520:five_prime_UTR 50.0%
AAGAGAGTTTCGAAGCTGCG+GGG + chr4_4:59681544-59681563 Msa0691520:five_prime_UTR 50.0%
GGTTCCACAGAAGAAGGGTT+AGG - chr4_4:59681779-59681798 None:intergenic 50.0%
!! AGGAATCATGGTGGACTTGG+GGG - chr4_4:59681810-59681829 None:intergenic 50.0%
!! CAGGAATCATGGTGGACTTG+GGG - chr4_4:59681811-59681830 None:intergenic 50.0%
!! GCAGGAATCATGGTGGACTT+GGG - chr4_4:59681812-59681831 None:intergenic 50.0%
!! TGCAGGAATCATGGTGGACT+TGG - chr4_4:59681813-59681832 None:intergenic 50.0%
CGAGGAGCAATAGCTAGCAA+TGG + chr4_4:59682197-59682216 Msa0691520:CDS 50.0%
! GGTATCTGCAAGTCTGGAAC+AGG + chr4_4:59682251-59682270 Msa0691520:CDS 50.0%
CTCTCTACATGCCCAAAAGG+GGG - chr4_4:59682535-59682554 None:intergenic 50.0%
TAGCCAATTGCATATCCGCC+TGG - chr4_4:59684511-59684530 None:intergenic 50.0%
!! TTGGCGTTATGCGTTTTGGG+TGG + chr4_4:59684850-59684869 Msa0691520:CDS 50.0%
GGCAGTTGAGACAGTTCCTT+TGG + chr4_4:59685048-59685067 Msa0691520:CDS 50.0%
AGAGATGGATGCCACACACT+TGG - chr4_4:59686084-59686103 None:intergenic 50.0%
!!! GTCGGTGGTGCGTTTTGTTT+TGG + chr4_4:59687067-59687086 Msa0691520:CDS 50.0%
!! AGAGAAGGGAAGTACCTGAG+TGG - chr4_4:59687161-59687180 None:intergenic 50.0%
ACCTGGACAACTCCAACAAG+AGG - chr4_4:59687853-59687872 None:intergenic 50.0%
GCGGTCTTCTCTTCAAGCAA+CGG - chr4_4:59688279-59688298 None:intergenic 50.0%
GCAGAACCTCAATCCCAAGA+AGG + chr4_4:59688297-59688316 Msa0691520:CDS 50.0%
! CTCTTCAAGCAATGGTGCTG+TGG - chr4_4:59688351-59688370 None:intergenic 50.0%
! GGCTGGCGGCTTGAGTTTTT+GGG - chr4_4:59680862-59680881 None:intergenic 55.0%
! TGGCTGGCGGCTTGAGTTTT+TGG - chr4_4:59680863-59680882 None:intergenic 55.0%
ATGGACAATTGGGTGGCTGG+CGG - chr4_4:59680876-59680895 None:intergenic 55.0%
AGAGAGTTTCGAAGCTGCGG+GGG + chr4_4:59681545-59681564 Msa0691520:five_prime_UTR 55.0%
CATCGTGGGAGTTGCACTGA+TGG + chr4_4:59682230-59682249 Msa0691520:CDS 55.0%
CTCTCTAGGCTCGTTGGTGT+TGG + chr4_4:59683831-59683850 Msa0691520:intron 55.0%
! TGATAACGCCCCAGCTTCAC+AGG + chr4_4:59683893-59683912 Msa0691520:CDS 55.0%
!! GCGTTATGCGTTTTGGGTGG+AGG + chr4_4:59684853-59684872 Msa0691520:CDS 55.0%
GACAACTCCAACAAGAGGCG+CGG - chr4_4:59687848-59687867 None:intergenic 55.0%
GCCTCTTGTTGGAGTTGTCC+AGG + chr4_4:59687849-59687868 Msa0691520:CDS 55.0%
! GATGGCGGCTCTATGCATAC+AGG + chr4_4:59687953-59687972 Msa0691520:intron 55.0%
TTTCGAAGCTGCGGGGGTGA+AGG + chr4_4:59681551-59681570 Msa0691520:five_prime_UTR 60.0%
GTGGACTTGGGGGCCATGTT+TGG - chr4_4:59681800-59681819 None:intergenic 60.0%
!! TAGGCTCGTTGGTGTTGGCG+AGG + chr4_4:59683836-59683855 Msa0691520:intron 60.0%
TCGTATTGGGGCCCCAAAGC+TGG + chr4_4:59686475-59686494 Msa0691520:CDS 60.0%
GTTCCTTCCGCGCCTCTTGT+TGG + chr4_4:59687838-59687857 Msa0691520:CDS 60.0%
! ACTCCAACAAGAGGCGCGGA+AGG - chr4_4:59687844-59687863 None:intergenic 60.0%
CTCTTCAAGCAACGGCGCAG+TGG - chr4_4:59688271-59688290 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 59680797 59688801 59680797 ID=Msa0691520;Name=Msa0691520
chr4_4 mRNA 59680797 59688801 59680797 ID=Msa0691520-mRNA-1;Parent=Msa0691520;Name=Msa0691520-mRNA-1;_AED=0.08;_eAED=0.09;_QI=922|0.93|0.93|1|1|1|16|478|554
chr4_4 exon 59680797 59681855 59680797 ID=Msa0691520-mRNA-1:exon:16226;Parent=Msa0691520-mRNA-1
chr4_4 exon 59682151 59682279 59682151 ID=Msa0691520-mRNA-1:exon:16227;Parent=Msa0691520-mRNA-1
chr4_4 exon 59683017 59683118 59683017 ID=Msa0691520-mRNA-1:exon:16228;Parent=Msa0691520-mRNA-1
chr4_4 exon 59683606 59683710 59683606 ID=Msa0691520-mRNA-1:exon:16229;Parent=Msa0691520-mRNA-1
chr4_4 exon 59683839 59683914 59683839 ID=Msa0691520-mRNA-1:exon:16230;Parent=Msa0691520-mRNA-1
chr4_4 exon 59684388 59684546 59684388 ID=Msa0691520-mRNA-1:exon:16231;Parent=Msa0691520-mRNA-1
chr4_4 exon 59684833 59684935 59684833 ID=Msa0691520-mRNA-1:exon:16232;Parent=Msa0691520-mRNA-1
chr4_4 exon 59685017 59685079 59685017 ID=Msa0691520-mRNA-1:exon:16233;Parent=Msa0691520-mRNA-1
chr4_4 exon 59685834 59685879 59685834 ID=Msa0691520-mRNA-1:exon:16234;Parent=Msa0691520-mRNA-1
chr4_4 exon 59686148 59686245 59686148 ID=Msa0691520-mRNA-1:exon:16235;Parent=Msa0691520-mRNA-1
chr4_4 exon 59686440 59686516 59686440 ID=Msa0691520-mRNA-1:exon:16236;Parent=Msa0691520-mRNA-1
chr4_4 exon 59686678 59686791 59686678 ID=Msa0691520-mRNA-1:exon:16237;Parent=Msa0691520-mRNA-1
chr4_4 exon 59687046 59687165 59687046 ID=Msa0691520-mRNA-1:exon:16238;Parent=Msa0691520-mRNA-1
chr4_4 exon 59687742 59687870 59687742 ID=Msa0691520-mRNA-1:exon:16239;Parent=Msa0691520-mRNA-1
chr4_4 exon 59687975 59688053 59687975 ID=Msa0691520-mRNA-1:exon:16240;Parent=Msa0691520-mRNA-1
chr4_4 exon 59688196 59688801 59688196 ID=Msa0691520-mRNA-1:exon:16241;Parent=Msa0691520-mRNA-1
chr4_4 five_prime_UTR 59680797 59681718 59680797 ID=Msa0691520-mRNA-1:five_prime_utr;Parent=Msa0691520-mRNA-1
chr4_4 CDS 59681719 59681855 59681719 ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1
chr4_4 CDS 59682151 59682279 59682151 ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1
chr4_4 CDS 59683017 59683118 59683017 ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1
chr4_4 CDS 59683606 59683710 59683606 ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1
chr4_4 CDS 59683839 59683914 59683839 ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1
chr4_4 CDS 59684388 59684546 59684388 ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1
chr4_4 CDS 59684833 59684935 59684833 ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1
chr4_4 CDS 59685017 59685079 59685017 ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1
chr4_4 CDS 59685834 59685879 59685834 ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1
chr4_4 CDS 59686148 59686245 59686148 ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1
chr4_4 CDS 59686440 59686516 59686440 ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1
chr4_4 CDS 59686678 59686791 59686678 ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1
chr4_4 CDS 59687046 59687165 59687046 ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1
chr4_4 CDS 59687742 59687870 59687742 ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1
chr4_4 CDS 59687975 59688053 59687975 ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1
chr4_4 CDS 59688196 59688323 59688196 ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1
chr4_4 three_prime_UTR 59688324 59688801 59688324 ID=Msa0691520-mRNA-1:three_prime_utr;Parent=Msa0691520-mRNA-1
Gene Sequence

>Msa0691520

ATGGCACAAAAACCTGAACATGAACCGAAACCTTCAACAACAACTTCTTCTTCAACACCTAACCCTTCTTCTGTGGAACCAAACATGGCCCCCAAGTCCACCATGATTCCTGCAACTTCTTGGTTTACACCAAAAAGGTTACTTGCTATATTTTGTGTGATTAACATGTTGAACTATTTGGACCGAGGAGCAATAGCTAGCAATGGTGTTAATGGACATCGTGGGAGTTGCACTGATGGTATCTGCAAGTCTGGAACAGGAATTCAGGGGGATTTTAACTTGAACAATTTTCAAGATGGAGTTCTCTCATCTGCTTTTATGGTTGGACTTCTTATAGCTTCTCCAATATTTGCATCTCTTTCAAAGAGTGTAAACCCCTTTAGACTTATTGGAGTTGGATTGTCAGTTTGGACTGTTGCAACCTTATGCTGTGGTCTTTCTTTCAATTTCTGGTCCATTACATTATGTCGCATGCTCGTTGGTGTTGGCGAGGCTTCATTTATAAGTCTTGCAGCACCTTTCATTGATGATAACGCCCCAGCTTCACAGTTGGAATATTTTATATTATATGGTATTGCGTTTGCTGCCTATTTTCTTTATGGTTCTAACCTTCTTATACTGGCTATGTATCAGAAAACAGTGTGGCTTTCTATATTTTACATGTGTATACCAGGCGGATATGCAATTGGCTATGTATATGGTGGAGTGGTTGGAAGTCATTTTGGTTGGCGTTATGCGTTTTGGGTGGAGGCTATCTTGATGCTTCCATTTGCTATTTTGGGATTTGTTATGAAGCCTTTGCAGTTAAAAGGTTTTGTCCCTGCTGATTCAAAAAATGTGCTGGCAGTTGAGACAGTTCCTTTGGGAGTTCAAGATGGGGAGGATTCAAATAGAAACAACGAATCGCATGAACCTTCCAAGCCAAAACATGCAAACAGAATATTAAATCAGCTCTCAATATTTCTGAAAGATATGAAAGAACTTTTGTCGGATAAGGTTTTTGTCGTCAACGTTCTAGGTTATATAGCATACAACTTTGTCATCGGTGCTTACTCGTATTGGGGCCCCAAAGCTGGTTATAGTATATATAACATGACTAATGCAGATATGATATTTGGAGGAATTACAATTGTATGCGGAATATTGGGCACTTTAGCAGGAGGCCTTGTTCTTGATTACATGACTAACACCCTATCAAATGCATTTAAGCTTCTCTCATTGACAACATTAGTCGGTGGTGCGTTTTGTTTTGGTGCCTTCGCATTCAAAAGCATGTATGGCTTCCTAGCTCTTTTTGCTATTGGTGAACTACTTGTTTTTGCCACTCAGGGTCCTGTGAATTATGTATGTCTCCATTGTGTTAAGCCAAGTTTGAGGCCACTATCAATGGCTATGTCTACTGTAGCTATTCATATATTCGGAGATGTTCCTTCCGCGCCTCTTGTTGGAGTTGTCCAGGATCATATTAACAACTGGAGAACTACCGCGTTGATTCTAACAACAATATTTTTTCCAGCAGCTGCAATATGGTTTATTGGAATATTTTTGCATAGTGTGGATAAATTTAATGAAGAGAGTGAGCATCATGTATCAAAGGTAGAAGGAACAACCACTGCGCCGTTGCTTGAAGAGAAGACCGCAGAACCTCAATCCCAAGAAGGTTAA

Protein sequence

>Msa0691520

MAQKPEHEPKPSTTTSSSTPNPSSVEPNMAPKSTMIPATSWFTPKRLLAIFCVINMLNYLDRGAIASNGVNGHRGSCTDGICKSGTGIQGDFNLNNFQDGVLSSAFMVGLLIASPIFASLSKSVNPFRLIGVGLSVWTVATLCCGLSFNFWSITLCRMLVGVGEASFISLAAPFIDDNAPASQLEYFILYGIAFAAYFLYGSNLLILAMYQKTVWLSIFYMCIPGGYAIGYVYGGVVGSHFGWRYAFWVEAILMLPFAILGFVMKPLQLKGFVPADSKNVLAVETVPLGVQDGEDSNRNNESHEPSKPKHANRILNQLSIFLKDMKELLSDKVFVVNVLGYIAYNFVIGAYSYWGPKAGYSIYNMTNADMIFGGITIVCGILGTLAGGLVLDYMTNTLSNAFKLLSLTTLVGGAFCFGAFAFKSMYGFLALFAIGELLVFATQGPVNYVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSAPLVGVVQDHINNWRTTALILTTIFFPAAAIWFIGIFLHSVDKFNEESEHHVSKVEGTTTAPLLEEKTAEPQSQEG*