Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0691520 | XP_003608336.2 | 90.827 | 556 | 20 | 2 | 1 | 553 | 1 | 528 | 0.0 | 1006 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0691520 | sp|Q9FLG8|SPNS2_ARATH | 62.900 | 531 | 131 | 6 | 21 | 544 | 12 | 483 | 0.0 | 648 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0691520 | G7JTZ9 | 90.827 | 556 | 20 | 2 | 1 | 553 | 1 | 528 | 0.0 | 1006 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0115870 | Msa0691520 | -0.802559 | 5.297710e-49 | -8.615850e-47 |
Msa0608490 | Msa0691520 | 0.956701 | 1.582921e-114 | -8.615850e-47 |
Msa0649010 | Msa0691520 | 0.896766 | 2.691113e-76 | -8.615850e-47 |
Msa0649040 | Msa0691520 | 0.952812 | 1.078521e-110 | -8.615850e-47 |
Msa0654520 | Msa0691520 | 0.824129 | 9.538529e-54 | -8.615850e-47 |
Msa0554910 | Msa0691520 | 0.991073 | 9.387781e-186 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0691520 | MtrunA17_Chr4g0049371 | 90.827 | 556 | 20 | 2 | 1 | 553 | 1 | 528 | 0.0 | 1006 |
Msa0691520 | MtrunA17_Chr2g0280091 | 66.860 | 516 | 115 | 6 | 25 | 528 | 1 | 472 | 0.0 | 677 |
Msa0691520 | MtrunA17_Chr5g0411431 | 64.299 | 521 | 147 | 5 | 29 | 543 | 1 | 488 | 0.0 | 666 |
Msa0691520 | MtrunA17_Chr2g0280101 | 69.302 | 215 | 31 | 2 | 60 | 271 | 1 | 183 | 1.79e-98 | 297 |
Msa0691520 | MtrunA17_Chr2g0280111 | 57.143 | 252 | 54 | 3 | 307 | 553 | 13 | 215 | 1.55e-88 | 272 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0691520 | AT2G22730.3 | 62.569 | 545 | 155 | 8 | 1 | 525 | 1 | 516 | 0.0 | 661 |
Msa0691520 | AT5G64500.1 | 62.900 | 531 | 131 | 6 | 21 | 544 | 12 | 483 | 0.0 | 648 |
Msa0691520 | AT2G22730.2 | 62.477 | 533 | 151 | 8 | 1 | 513 | 1 | 504 | 0.0 | 642 |
Msa0691520 | AT2G22730.6 | 62.289 | 533 | 152 | 7 | 1 | 526 | 1 | 491 | 0.0 | 639 |
Msa0691520 | AT2G22730.1 | 62.308 | 520 | 147 | 7 | 1 | 513 | 1 | 478 | 0.0 | 620 |
Msa0691520 | AT5G65687.1 | 58.350 | 497 | 163 | 8 | 32 | 523 | 12 | 469 | 0.0 | 574 |
Msa0691520 | AT2G22730.7 | 62.670 | 442 | 121 | 6 | 107 | 534 | 1 | 412 | 0.0 | 542 |
Msa0691520 | AT2G22730.5 | 58.963 | 463 | 141 | 8 | 1 | 443 | 1 | 434 | 3.56e-179 | 515 |
Msa0691520 | AT2G22730.4 | 57.421 | 411 | 126 | 7 | 1 | 404 | 1 | 369 | 1.12e-150 | 437 |
Find 166 sgRNAs with CRISPR-Local
Find 470 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGGTCTTTCTTTCAATTTC+TGG | 0.022632 | 4_4:+59683668 | Msa0691520:CDS |
CACCCTATCAAATGCATTTA+AGG | 0.038973 | 4_4:+59686770 | Msa0691520:CDS |
GATGCTTCCATTTGCTATTT+TGG | 0.067366 | 4_4:+59684883 | Msa0691520:CDS |
TGGATGGATTATCCTTTATT+TGG | 0.124107 | 4_4:-59681470 | None:intergenic |
GTAAACCCCTTTAGACTTAT+TGG | 0.127810 | 4_4:+59683607 | Msa0691520:CDS |
ACAAACTTGTGATTAGATTT+TGG | 0.163860 | 4_4:+59681195 | Msa0691520:five_prime_UTR |
AATATTCTGTTTGCATGTTT+TGG | 0.190664 | 4_4:-59686149 | None:intergenic |
CCATGATTCCTGCAACTTCT+TGG | 0.194316 | 4_4:+59681819 | Msa0691520:CDS |
AATATAATATTATATATTAT+TGG | 0.200897 | 4_4:+59681695 | Msa0691520:five_prime_UTR |
TACAATTGTATGCGGAATAT+TGG | 0.202232 | 4_4:+59686707 | Msa0691520:CDS |
ATTATTAATTAAATAGAAAA+TGG | 0.207657 | 4_4:-59681634 | None:intergenic |
CTTCTTGGTTTACACCAAAA+AGG | 0.250484 | 4_4:+59681834 | Msa0691520:CDS |
AAACAGGTTGGAAGTCATTT+TGG | 0.253591 | 4_4:+59684827 | Msa0691520:intron |
ACTAATGCAGATATGATATT+TGG | 0.253804 | 4_4:+59686678 | Msa0691520:CDS |
CATCGGTGCTTACTCGTATT+GGG | 0.254283 | 4_4:+59686462 | Msa0691520:CDS |
GATTAACATGTTGAACTATT+TGG | 0.255328 | 4_4:+59682172 | Msa0691520:CDS |
GCAGCTGCAATATGGTTTAT+TGG | 0.257585 | 4_4:+59688032 | Msa0691520:CDS |
ATGAAGCCTTTGCAGTTAAA+AGG | 0.258410 | 4_4:+59684914 | Msa0691520:CDS |
TTTGAAAGAGATGCAAATAT+TGG | 0.266920 | 4_4:-59683093 | None:intergenic |
TCATCGGTGCTTACTCGTAT+TGG | 0.285278 | 4_4:+59686461 | Msa0691520:CDS |
GGCAGTTGAGACAGTTCCTT+TGG | 0.285577 | 4_4:+59685048 | Msa0691520:CDS |
TAGATTTGATACTAAACTTA+TGG | 0.293376 | 4_4:-59681080 | None:intergenic |
GAAGGTTTCGGTTCATGTTC+AGG | 0.301999 | 4_4:-59681731 | None:intergenic |
CAACCTTAAATGCATTTGAT+AGG | 0.304914 | 4_4:-59686773 | None:intergenic |
TTGGAGTTGGATTGTCAGTT+TGG | 0.308512 | 4_4:+59683626 | Msa0691520:CDS |
TATATACTATAACCAGCTTT+GGG | 0.324548 | 4_4:-59686487 | None:intergenic |
GTTCCTTCCGCGCCTCTTGT+TGG | 0.325321 | 4_4:+59687838 | Msa0691520:CDS |
TCCTTTATTTGGGTAATGTA+TGG | 0.328422 | 4_4:-59681459 | None:intergenic |
TGCAGGAATCATGGTGGACT+TGG | 0.331502 | 4_4:-59681810 | None:intergenic |
TGGTTCTAACCTTCTTATAC+TGG | 0.334464 | 4_4:+59684438 | Msa0691520:CDS |
ATGTTTATGTTTCACCATCT+TGG | 0.336990 | 4_4:+59688734 | Msa0691520:three_prime_UTR |
TTGGTTGGCGTTATGCGTTT+TGG | 0.340113 | 4_4:+59684846 | Msa0691520:CDS |
GTTAGAACCATAAAGAAAAT+AGG | 0.340881 | 4_4:-59684425 | None:intergenic |
ATAGCTAGCAATGGTGTTAA+TGG | 0.342905 | 4_4:+59682206 | Msa0691520:CDS |
ACAATTGTATGCGGAATATT+GGG | 0.345355 | 4_4:+59686708 | Msa0691520:CDS |
TATTTAAATTCGCATATGAT+TGG | 0.352036 | 4_4:-59681418 | None:intergenic |
GGATGGATTATCCTTTATTT+GGG | 0.359939 | 4_4:-59681469 | None:intergenic |
CACAAGTTTGTTGTTGCTGC+AGG | 0.360309 | 4_4:-59681183 | None:intergenic |
GCATAAAAGGTTATCAGAAA+TGG | 0.366960 | 4_4:-59680892 | None:intergenic |
TCCATACATTACCCAAATAA+AGG | 0.367294 | 4_4:+59681458 | Msa0691520:five_prime_UTR |
TGCTTGAAGATATTACAAAA+AGG | 0.368513 | 4_4:-59688324 | None:intergenic |
ATATATACTATAACCAGCTT+TGG | 0.369080 | 4_4:-59686488 | None:intergenic |
CATCAAAAGATATTACAAAA+AGG | 0.379177 | 4_4:-59688557 | None:intergenic |
GGTTATCAGAAATGGACAAT+TGG | 0.381660 | 4_4:-59680884 | None:intergenic |
GAGAGATTGAAGAAGAATAA+AGG | 0.384408 | 4_4:-59680837 | None:intergenic |
GAAGTTGTTGTTGAAGGTTT+CGG | 0.387496 | 4_4:-59681743 | None:intergenic |
TGTTTATGTTTCACCATCTT+GGG | 0.390266 | 4_4:+59688735 | Msa0691520:three_prime_UTR |
GGTGTAAACCAAGAAGTTGC+AGG | 0.391820 | 4_4:-59681827 | None:intergenic |
GGAATATTGGGCACTTTAGC+AGG | 0.393766 | 4_4:+59686720 | Msa0691520:CDS |
CCAACTCCAATAAGTCTAAA+GGG | 0.394466 | 4_4:-59683613 | None:intergenic |
CCCTTTAGACTTATTGGAGT+TGG | 0.397838 | 4_4:+59683613 | Msa0691520:CDS |
ACTGTAGCTATTCATATATT+CGG | 0.404341 | 4_4:+59687811 | Msa0691520:CDS |
TATGCAATTGGCTATGTATA+TGG | 0.405101 | 4_4:+59684517 | Msa0691520:CDS |
ATTTAAATTCGCATATGATT+GGG | 0.410197 | 4_4:-59681417 | None:intergenic |
GCCTCTTGTTGGAGTTGTCC+AGG | 0.411072 | 4_4:+59687849 | Msa0691520:CDS |
GGTTAACCTTCTTGGGATTG+AGG | 0.418224 | 4_4:-59688303 | None:intergenic |
CTCTCTAGGCTCGTTGGTGT+TGG | 0.418538 | 4_4:+59683831 | Msa0691520:intron |
GTTATCAGAAATGGACAATT+GGG | 0.424495 | 4_4:-59680883 | None:intergenic |
TTCGCATTCAAAAGCATGTA+TGG | 0.429280 | 4_4:+59687094 | Msa0691520:CDS |
ACAGTTCCTTTGGGAGTTCA+AGG | 0.434203 | 4_4:+59685058 | Msa0691520:CDS |
CAGGAATCATGGTGGACTTG+GGG | 0.437931 | 4_4:-59681808 | None:intergenic |
ATGTTTGGTTCCACAGAAGA+AGG | 0.439639 | 4_4:-59681782 | None:intergenic |
ATTGATAGTGGCCTCAAACT+TGG | 0.439716 | 4_4:-59687778 | None:intergenic |
AAGTAACAAACCTGTGAAGC+TGG | 0.442495 | 4_4:-59683903 | None:intergenic |
TACAGGATCATATTAACAAC+TGG | 0.443836 | 4_4:+59687970 | Msa0691520:intron |
TCCAACTCCAATAAGTCTAA+AGG | 0.446511 | 4_4:-59683614 | None:intergenic |
CATCATGTATCAAAGGTAGA+AGG | 0.453571 | 4_4:+59688240 | Msa0691520:CDS |
ACAAATCCCAAAATAGCAAA+TGG | 0.454056 | 4_4:-59684890 | None:intergenic |
TGTTGTTGCTGCAGGGTATG+AGG | 0.454305 | 4_4:-59681175 | None:intergenic |
GCAGTTGAGACAGTTCCTTT+GGG | 0.456001 | 4_4:+59685049 | Msa0691520:CDS |
GAAAGAAAGACCACAGCATA+AGG | 0.459452 | 4_4:-59683659 | None:intergenic |
GCAGGAATCATGGTGGACTT+GGG | 0.464706 | 4_4:-59681809 | None:intergenic |
GTTCTTGTTGACAATGATGT+TGG | 0.465124 | 4_4:-59681515 | None:intergenic |
GGTATCTGCAAGTCTGGAAC+AGG | 0.465998 | 4_4:+59682251 | Msa0691520:CDS |
ATAAACCATATTGCAGCTGC+TGG | 0.467805 | 4_4:-59688029 | None:intergenic |
CCAAGAAGTTGCAGGAATCA+TGG | 0.472191 | 4_4:-59681819 | None:intergenic |
TATATGTTTGTATATGCAAT+CGG | 0.472667 | 4_4:+59688416 | Msa0691520:three_prime_UTR |
GAAGAAGAAGTTGTTGTTGA+AGG | 0.473005 | 4_4:-59681749 | None:intergenic |
CCTGTCTTCTCTTCAAGCAA+TGG | 0.474940 | 4_4:-59688356 | None:intergenic |
AACCTTAAATGCATTTGATA+GGG | 0.476183 | 4_4:-59686772 | None:intergenic |
AAAGTGCTGGACACACGTTT+AGG | 0.477991 | 4_4:+59688439 | Msa0691520:three_prime_UTR |
GGTTCCACAGAAGAAGGGTT+AGG | 0.479643 | 4_4:-59681776 | None:intergenic |
TCGTATTGGGGCCCCAAAGC+TGG | 0.481238 | 4_4:+59686475 | Msa0691520:CDS |
TTCTTCTGTGGAACCAAACA+TGG | 0.481946 | 4_4:+59681784 | Msa0691520:CDS |
CTTATTCTCTCTAGGCTCGT+TGG | 0.482973 | 4_4:+59683825 | Msa0691520:intron |
AAGTTTGAGGCCACTATCAA+TGG | 0.484428 | 4_4:+59687780 | Msa0691520:CDS |
TGATAACGCCCCAGCTTCAC+AGG | 0.486992 | 4_4:+59683893 | Msa0691520:CDS |
GAAATGGACAATTGGGTGGC+TGG | 0.494832 | 4_4:-59680876 | None:intergenic |
GTAGACATAGCCATTGATAG+TGG | 0.500369 | 4_4:-59687790 | None:intergenic |
CTCTTCAAGCAATGGTGCTG+TGG | 0.501555 | 4_4:-59688348 | None:intergenic |
CAAGAGAGTTTCGAAGCTGC+GGG | 0.504016 | 4_4:+59681543 | Msa0691520:five_prime_UTR |
ACTGATGGTATCTGCAAGTC+TGG | 0.512923 | 4_4:+59682245 | Msa0691520:CDS |
ATACCAGGCGGATATGCAAT+TGG | 0.513392 | 4_4:+59684505 | Msa0691520:CDS |
AATGAAAAGAAATAATAGAA+TGG | 0.519636 | 4_4:-59680808 | None:intergenic |
TAAACCTTCTTCTTTCTACC+TGG | 0.522437 | 4_4:+59681588 | Msa0691520:five_prime_UTR |
AATATTATATATTATTGGAA+TGG | 0.524557 | 4_4:+59681700 | Msa0691520:exon |
AAATAGAAAATGGAGGTTGA+AGG | 0.524772 | 4_4:-59681624 | None:intergenic |
GAGTGAGCATCATGTATCAA+AGG | 0.526813 | 4_4:+59688233 | Msa0691520:CDS |
AGTAACAAACCTGTGAAGCT+GGG | 0.527094 | 4_4:-59683902 | None:intergenic |
CTCTTCAAGCAACGGCGCAG+TGG | 0.528433 | 4_4:-59688268 | None:intergenic |
TCGTCAAAGTGACGAGGATG+TGG | 0.531526 | 4_4:-59681490 | None:intergenic |
ATTAATTAAATAGAAAATGG+AGG | 0.532992 | 4_4:-59681631 | None:intergenic |
CTCTCATTGACAACATTAGT+CGG | 0.535284 | 4_4:+59687049 | Msa0691520:CDS |
AATGCAGATATGATATTTGG+AGG | 0.536029 | 4_4:+59686681 | Msa0691520:CDS |
GAAGGTAACAAAAGCATGCC+AGG | 0.539035 | 4_4:-59681606 | None:intergenic |
GTTGTTGCTGCAGGGTATGA+GGG | 0.539375 | 4_4:-59681174 | None:intergenic |
TTACATGCGACATAATGTAA+TGG | 0.544368 | 4_4:-59683692 | None:intergenic |
AACACCTAACCCTTCTTCTG+TGG | 0.544683 | 4_4:+59681772 | Msa0691520:CDS |
AGTAGTCAAAGCTAGATGAC+TGG | 0.544697 | 4_4:-59681054 | None:intergenic |
CATTGCTAGCTATTGCTCCT+CGG | 0.549808 | 4_4:-59682196 | None:intergenic |
CATGCCAGGTAGAAAGAAGA+AGG | 0.550575 | 4_4:-59681592 | None:intergenic |
CAAATCTACAACATTGGTCA+TGG | 0.550934 | 4_4:+59681095 | Msa0691520:five_prime_UTR |
AGGTGAAGTTCTCACTTGGA+AGG | 0.555161 | 4_4:-59685872 | None:intergenic |
TTCTTGGGATTGAGGTTCTG+CGG | 0.555513 | 4_4:-59688295 | None:intergenic |
GATACATAGCCAGTATAAGA+AGG | 0.558356 | 4_4:-59684447 | None:intergenic |
TAGTATCAAATCTACAACAT+TGG | 0.559755 | 4_4:+59681089 | Msa0691520:five_prime_UTR |
ACTCCAACAAGAGGCGCGGA+AGG | 0.560727 | 4_4:-59687841 | None:intergenic |
TAGCCAATTGCATATCCGCC+TGG | 0.566626 | 4_4:-59684508 | None:intergenic |
CAAAGTGACGAGGATGTGGA+TGG | 0.567049 | 4_4:-59681486 | None:intergenic |
ATCGGTGCTTACTCGTATTG+GGG | 0.576291 | 4_4:+59686463 | Msa0691520:CDS |
ACAAGAGAGTTTCGAAGCTG+CGG | 0.577938 | 4_4:+59681542 | Msa0691520:five_prime_UTR |
ACAAGTTTGTTGTTGCTGCA+GGG | 0.578232 | 4_4:-59681182 | None:intergenic |
TTTACATGATGTGCCCAAGA+TGG | 0.580075 | 4_4:-59688748 | None:intergenic |
ATAGCATACAACTTTGTCAT+CGG | 0.582605 | 4_4:+59686445 | Msa0691520:CDS |
CATCGTGGGAGTTGCACTGA+TGG | 0.591365 | 4_4:+59682230 | Msa0691520:CDS |
TGTTTGGTTCCACAGAAGAA+GGG | 0.592863 | 4_4:-59681781 | None:intergenic |
TATTTGCATCTCTTTCAAAG+AGG | 0.593085 | 4_4:+59683097 | Msa0691520:CDS |
AAGGAGAAATAGAAAACGGA+TGG | 0.596892 | 4_4:-59681334 | None:intergenic |
GCGGTCTTCTCTTCAAGCAA+CGG | 0.597251 | 4_4:-59688276 | None:intergenic |
TGGAGACATACATAATTCAC+AGG | 0.603452 | 4_4:-59687745 | None:intergenic |
TATATGCAATCGGAAAGTGC+TGG | 0.605386 | 4_4:+59688426 | Msa0691520:three_prime_UTR |
ATTGTGTTAAGCCAAGTTTG+AGG | 0.607042 | 4_4:+59687767 | Msa0691520:CDS |
TAGGCTCGTTGGTGTTGGCG+AGG | 0.608838 | 4_4:+59683836 | Msa0691520:intron |
ATATACTATAACCAGCTTTG+GGG | 0.609629 | 4_4:-59686486 | None:intergenic |
GGAGGAATTACAATTGTATG+CGG | 0.612364 | 4_4:+59686699 | Msa0691520:CDS |
CCATTGCTTGAAGAGAAGAC+AGG | 0.614400 | 4_4:+59688356 | Msa0691520:three_prime_UTR |
GTAACAAACCTGTGAAGCTG+GGG | 0.624884 | 4_4:-59683901 | None:intergenic |
ACCTGGACAACTCCAACAAG+AGG | 0.626399 | 4_4:-59687850 | None:intergenic |
CAACTCCAATAAGTCTAAAG+GGG | 0.627956 | 4_4:-59683612 | None:intergenic |
CGAGGAGCAATAGCTAGCAA+TGG | 0.629263 | 4_4:+59682197 | Msa0691520:CDS |
ATAGTACCTTGAACTCCCAA+AGG | 0.635654 | 4_4:-59685064 | None:intergenic |
TCAAACTTGGCTTAACACAA+TGG | 0.635878 | 4_4:-59687765 | None:intergenic |
GCAGAACCTCAATCCCAAGA+AGG | 0.639701 | 4_4:+59688297 | Msa0691520:CDS |
ATATTGGGCACTTTAGCAGG+AGG | 0.639746 | 4_4:+59686723 | Msa0691520:CDS |
TAGTCATGTAATCAAGAACA+AGG | 0.644078 | 4_4:-59686746 | None:intergenic |
ACTGTTGCAACCTTATGCTG+TGG | 0.644221 | 4_4:+59683649 | Msa0691520:CDS |
GGGGCGTTATCATCAATGAA+AGG | 0.644741 | 4_4:-59683882 | None:intergenic |
ATCAGAAATGGACAATTGGG+TGG | 0.646003 | 4_4:-59680880 | None:intergenic |
TGGTTATAGTATATATAACA+TGG | 0.649082 | 4_4:+59686495 | Msa0691520:CDS |
AGGAATCATGGTGGACTTGG+GGG | 0.651174 | 4_4:-59681807 | None:intergenic |
GACAACTCCAACAAGAGGCG+CGG | 0.651802 | 4_4:-59687845 | None:intergenic |
ATGGACAATTGGGTGGCTGG+CGG | 0.652546 | 4_4:-59680873 | None:intergenic |
AATGGTGTTAATGGACATCG+TGG | 0.666287 | 4_4:+59682215 | Msa0691520:CDS |
AGAGAGTTTCGAAGCTGCGG+GGG | 0.670617 | 4_4:+59681545 | Msa0691520:five_prime_UTR |
AAGAGAGTTTCGAAGCTGCG+GGG | 0.678233 | 4_4:+59681544 | Msa0691520:five_prime_UTR |
TGGCTATGTATATGGTGGAG+TGG | 0.682859 | 4_4:+59684525 | Msa0691520:CDS |
ATGTTGAACTATTTGGACCG+AGG | 0.689226 | 4_4:+59682179 | Msa0691520:CDS |
GCAATTGGCTATGTATATGG+TGG | 0.689730 | 4_4:+59684520 | Msa0691520:CDS |
TCATTGACAACATTAGTCGG+TGG | 0.705421 | 4_4:+59687052 | Msa0691520:CDS |
AGAAGTTGCAGGAATCATGG+TGG | 0.707926 | 4_4:-59681816 | None:intergenic |
ATGGTGTTAATGGACATCGT+GGG | 0.725953 | 4_4:+59682216 | Msa0691520:CDS |
AGAGAAGGGAAGTACCTGAG+TGG | 0.741711 | 4_4:-59687158 | None:intergenic |
AATGTACGAAACAAACTACG+TGG | 0.765297 | 4_4:-59688585 | None:intergenic |
TTGGTGTCGTCAAAGTGACG+AGG | 0.769150 | 4_4:-59681496 | None:intergenic |
CTATGTATCAGAAAACAGTG+TGG | 0.772625 | 4_4:+59684461 | Msa0691520:CDS |
TATTGTTGTTAGAATCAACG+CGG | 0.775609 | 4_4:-59688000 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAAAAAAAAAAAAA+AGG | - | chr4_4:59681355-59681374 | None:intergenic | 0.0% |
!! | AATATAATATTATATATTAT+TGG | + | chr4_4:59681695-59681714 | Msa0691520:five_prime_UTR | 0.0% |
!!! | TGTCAAAATAAATTTTTTTA+AGG | + | chr4_4:59680960-59680979 | Msa0691520:five_prime_UTR | 10.0% |
!! | AATATTATATATTATTGGAA+TGG | + | chr4_4:59681700-59681719 | Msa0691520:exon | 10.0% |
!!! | AAAATTTGATTTTTTTGATT+TGG | + | chr4_4:59681925-59681944 | Msa0691520:intron | 10.0% |
!!! | AAATTTGATTTTTTTGATTT+GGG | + | chr4_4:59681926-59681945 | Msa0691520:intron | 10.0% |
!!! | TTGGAATATTTTATATTATA+TGG | + | chr4_4:59684388-59684407 | Msa0691520:CDS | 10.0% |
!!! | TTTTAAATTATATTTCAAGT+GGG | - | chr4_4:59685129-59685148 | None:intergenic | 10.0% |
!!! | ATTTTAAATTATATTTCAAG+TGG | - | chr4_4:59685130-59685149 | None:intergenic | 10.0% |
!! | AATTAAATAAATATGAAGAA+AGG | - | chr4_4:59686262-59686281 | None:intergenic | 10.0% |
!! | ATTGAATATTTAAATAAGTT+AGG | + | chr4_4:59686880-59686899 | Msa0691520:intron | 10.0% |
!! | AATGAAAAGAAATAATAGAA+TGG | - | chr4_4:59680811-59680830 | None:intergenic | 15.0% |
!!! | ATGAAGTTTTTTTTTTTCTT+TGG | - | chr4_4:59681032-59681051 | None:intergenic | 15.0% |
!!! | TTCTACTGAAAAATATTTTT+TGG | + | chr4_4:59681301-59681320 | Msa0691520:five_prime_UTR | 15.0% |
!! | ATTAATTAAATAGAAAATGG+AGG | - | chr4_4:59681634-59681653 | None:intergenic | 15.0% |
!!! | CAATGTTTTTTTATTCAAAA+CGG | - | chr4_4:59681895-59681914 | None:intergenic | 15.0% |
!!! | TTTCCCTAATTTTATTTTAT+TGG | + | chr4_4:59681990-59682009 | Msa0691520:intron | 15.0% |
!! | CAACCAATAAAATAAAATTA+GGG | - | chr4_4:59681996-59682015 | None:intergenic | 15.0% |
!! | ACAACCAATAAAATAAAATT+AGG | - | chr4_4:59681997-59682016 | None:intergenic | 15.0% |
!!! | TAATTTTATTTTATTGGTTG+TGG | + | chr4_4:59681996-59682015 | Msa0691520:intron | 15.0% |
!!! | AATTTTATTTTATTGGTTGT+GGG | + | chr4_4:59681997-59682016 | Msa0691520:intron | 15.0% |
!!! | TTTTTTTTATTATGTTGTGT+AGG | + | chr4_4:59682129-59682148 | Msa0691520:intron | 15.0% |
!!! | TAGTTAAGTTACAAATTTTA+AGG | + | chr4_4:59682472-59682491 | Msa0691520:intron | 15.0% |
!! | TATAATATAGATCACATAAA+TGG | - | chr4_4:59683550-59683569 | None:intergenic | 15.0% |
!!! | AGATTATTTTTCAAGTTTTA+TGG | + | chr4_4:59683725-59683744 | Msa0691520:intron | 15.0% |
!! | AGAGAATAAGAAAAAAATAA+GGG | - | chr4_4:59683815-59683834 | None:intergenic | 15.0% |
!!! | TTTAAATTATATTTCAAGTG+GGG | - | chr4_4:59685128-59685147 | None:intergenic | 15.0% |
!!! | ATTGTTGATAGAAAATTATT+TGG | - | chr4_4:59685480-59685499 | None:intergenic | 15.0% |
!!! | ATAATTTTCTATCAACAATT+AGG | + | chr4_4:59685481-59685500 | Msa0691520:intron | 15.0% |
!!! | AAATAACATAATTTTTCTCT+AGG | + | chr4_4:59685685-59685704 | Msa0691520:intron | 15.0% |
!!! | ATGTTAGGTTTTTATTTTAT+TGG | + | chr4_4:59685748-59685767 | Msa0691520:intron | 15.0% |
!!! | ATTTTTTATGACTCTTATAT+AGG | + | chr4_4:59686126-59686145 | Msa0691520:intron | 15.0% |
!! | GTAAAAAATAGTTCATATAT+AGG | - | chr4_4:59686363-59686382 | None:intergenic | 15.0% |
!! | AATTTAAAAAATTACGAATG+AGG | + | chr4_4:59687577-59687596 | Msa0691520:intron | 15.0% |
!!! | CTGAATTTTATTTGCATAAA+AGG | - | chr4_4:59680908-59680927 | None:intergenic | 20.0% |
!!! | TTATTTTGACAGAAATATAG+AGG | - | chr4_4:59680951-59680970 | None:intergenic | 20.0% |
!!! | AAGTTTTTTTTTTTCTTTGG+TGG | - | chr4_4:59681029-59681048 | None:intergenic | 20.0% |
!! | TAGATTTGATACTAAACTTA+TGG | - | chr4_4:59681083-59681102 | None:intergenic | 20.0% |
!! | AAAAAAGGAGAAATAGAAAA+CGG | - | chr4_4:59681341-59681360 | None:intergenic | 20.0% |
!! | TAAGATATGAACAAAAATGA+AGG | + | chr4_4:59681377-59681396 | Msa0691520:five_prime_UTR | 20.0% |
!! | ATTTAAATTCGCATATGATT+GGG | - | chr4_4:59681420-59681439 | None:intergenic | 20.0% |
!! | TATTTAAATTCGCATATGAT+TGG | - | chr4_4:59681421-59681440 | None:intergenic | 20.0% |
!!! | TTTGATTTGGGTATTTATTT+TGG | + | chr4_4:59681938-59681957 | Msa0691520:intron | 20.0% |
!!! | ATTTTATTTTATTGGTTGTG+GGG | + | chr4_4:59681998-59682017 | Msa0691520:intron | 20.0% |
!! | TTGAATTCTTGAATAAGTTT+AGG | + | chr4_4:59682327-59682346 | Msa0691520:intron | 20.0% |
!! | GTTAAATAAAAAAGCAATCT+TGG | + | chr4_4:59682442-59682461 | Msa0691520:intron | 20.0% |
!!! | TTACAAATTTTAAGGAAGAA+GGG | + | chr4_4:59682480-59682499 | Msa0691520:intron | 20.0% |
!! | TTCAATCATAAACCATATAT+TGG | - | chr4_4:59682687-59682706 | None:intergenic | 20.0% |
!! | TAGATAGATAGTTCAATTTA+TGG | + | chr4_4:59682787-59682806 | Msa0691520:intron | 20.0% |
!!! | TTTATTTAAGGTATCATTGT+GGG | - | chr4_4:59683159-59683178 | None:intergenic | 20.0% |
!!! | ATTTATTTAAGGTATCATTG+TGG | - | chr4_4:59683160-59683179 | None:intergenic | 20.0% |
!!! | ATGTTCAAGGTATTTATTTA+AGG | - | chr4_4:59683171-59683190 | None:intergenic | 20.0% |
!! | TATCATTGATATGAGTATTA+AGG | + | chr4_4:59683392-59683411 | Msa0691520:intron | 20.0% |
!! | ATCATTGATATGAGTATTAA+GGG | + | chr4_4:59683393-59683412 | Msa0691520:intron | 20.0% |
!! | GAAAAAATAAGAATATCAGA+TGG | - | chr4_4:59683793-59683812 | None:intergenic | 20.0% |
!! | GAGAGAATAAGAAAAAAATA+AGG | - | chr4_4:59683816-59683835 | None:intergenic | 20.0% |
!!! | ATTTTTTTCTTATTCTCTCT+AGG | + | chr4_4:59683817-59683836 | Msa0691520:intron | 20.0% |
!! | CTTAGTTTAACTAAAATATG+AGG | - | chr4_4:59683998-59684017 | None:intergenic | 20.0% |
!! | TTAATTATGATACCTTCATT+GGG | + | chr4_4:59684074-59684093 | Msa0691520:intron | 20.0% |
!!! | TTTTATAACTCAAATCACTA+CGG | + | chr4_4:59684258-59684277 | Msa0691520:intron | 20.0% |
!! | GAAAGATAAAAAAGCAAAAT+AGG | + | chr4_4:59684595-59684614 | Msa0691520:intron | 20.0% |
!! | AGATAAGAAATATCTTAAAC+AGG | + | chr4_4:59684677-59684696 | Msa0691520:intron | 20.0% |
!! | GATAAGAAATATCTTAAACA+GGG | + | chr4_4:59684678-59684697 | Msa0691520:intron | 20.0% |
!! | ATAAGAAATATCTTAAACAG+GGG | + | chr4_4:59684679-59684698 | Msa0691520:intron | 20.0% |
!! | CAAGTAAAAAAATATGACAA+GGG | - | chr4_4:59684767-59684786 | None:intergenic | 20.0% |
!! | ACAAGTAAAAAAATATGACA+AGG | - | chr4_4:59684768-59684787 | None:intergenic | 20.0% |
!!! | TTGCATTGATTTATTTATTG+TGG | + | chr4_4:59684951-59684970 | Msa0691520:intron | 20.0% |
!!! | TATTATGTTTTAGACTAGTT+TGG | + | chr4_4:59685084-59685103 | Msa0691520:intron | 20.0% |
!!! | TTAAATTATATTTCAAGTGG+GGG | - | chr4_4:59685127-59685146 | None:intergenic | 20.0% |
!! | AATCTTTCTATATCTGAAAA+AGG | + | chr4_4:59685401-59685420 | Msa0691520:intron | 20.0% |
!! | ATCTTTCTATATCTGAAAAA+GGG | + | chr4_4:59685402-59685421 | Msa0691520:intron | 20.0% |
!! | CATAGACAATATTAAATCTT+AGG | - | chr4_4:59685623-59685642 | None:intergenic | 20.0% |
!! | AAATAAAAACCTAACATTTC+CGG | - | chr4_4:59685745-59685764 | None:intergenic | 20.0% |
!! | AATATTTCTCAGCTATTATA+AGG | + | chr4_4:59685981-59686000 | Msa0691520:intron | 20.0% |
!!! | TAGCAACAAAAGTTTTTAAA+AGG | - | chr4_4:59686045-59686064 | None:intergenic | 20.0% |
!! | TGGTTATAGTATATATAACA+TGG | + | chr4_4:59686495-59686514 | Msa0691520:CDS | 20.0% |
!! | ATCAAATAAAGAACTGAATT+AGG | - | chr4_4:59686854-59686873 | None:intergenic | 20.0% |
!! | ATTTAAATAAGTTAGGTAAC+TGG | + | chr4_4:59686887-59686906 | Msa0691520:intron | 20.0% |
!!! | ACATCTTTTAATATTACTCT+TGG | - | chr4_4:59687502-59687521 | None:intergenic | 20.0% |
!! | GAGTAATATTAAAAGATGTT+AGG | + | chr4_4:59687503-59687522 | Msa0691520:intron | 20.0% |
!! | TACGAATAAAAATAAGTGTT+TGG | - | chr4_4:59687698-59687717 | None:intergenic | 20.0% |
!!! | TTCTTACTATTTTTTCTTTC+AGG | + | chr4_4:59687720-59687739 | Msa0691520:intron | 20.0% |
!!! | TCTTACTATTTTTTCTTTCA+GGG | + | chr4_4:59687721-59687740 | Msa0691520:intron | 20.0% |
!! | TATATGTTTGTATATGCAAT+CGG | + | chr4_4:59688416-59688435 | Msa0691520:three_prime_UTR | 20.0% |
!! | AAAAAGGTTAATAGTATGTT+TGG | - | chr4_4:59688544-59688563 | None:intergenic | 20.0% |
!! | CATCAAAAGATATTACAAAA+AGG | - | chr4_4:59688560-59688579 | None:intergenic | 20.0% |
!!! | CTTTTTGTAATATCTTTTGA+TGG | + | chr4_4:59688558-59688577 | Msa0691520:three_prime_UTR | 20.0% |
!! | TAAGGAGTTACTTTGAAAAA+TGG | + | chr4_4:59680978-59680997 | Msa0691520:five_prime_UTR | 25.0% |
!! | AAGGAGTTACTTTGAAAAAT+GGG | + | chr4_4:59680979-59680998 | Msa0691520:five_prime_UTR | 25.0% |
! | TAGTATCAAATCTACAACAT+TGG | + | chr4_4:59681089-59681108 | Msa0691520:five_prime_UTR | 25.0% |
!! | ACAAACTTGTGATTAGATTT+TGG | + | chr4_4:59681195-59681214 | Msa0691520:five_prime_UTR | 25.0% |
!!! | ATTTGGGTATTTATTTTGGA+GGG | + | chr4_4:59681942-59681961 | Msa0691520:intron | 25.0% |
!!! | TTTTGAATGTTGTTGATGAT+TGG | + | chr4_4:59682024-59682043 | Msa0691520:intron | 25.0% |
! | TAATGCAGGTTAAAATTAAC+TGG | + | chr4_4:59682055-59682074 | Msa0691520:intron | 25.0% |
! | GATTAACATGTTGAACTATT+TGG | + | chr4_4:59682172-59682191 | Msa0691520:CDS | 25.0% |
!!! | GTTACAAATTTTAAGGAAGA+AGG | + | chr4_4:59682479-59682498 | Msa0691520:intron | 25.0% |
! | TATATTACAGTACACTATCA+TGG | - | chr4_4:59682928-59682947 | None:intergenic | 25.0% |
!!! | AACTTGAACAATTTTCAAGA+TGG | + | chr4_4:59683027-59683046 | Msa0691520:CDS | 25.0% |
! | TTTGAAAGAGATGCAAATAT+TGG | - | chr4_4:59683096-59683115 | None:intergenic | 25.0% |
!! | TTATTTGACTTCTTAATGCT+AGG | + | chr4_4:59683252-59683271 | Msa0691520:intron | 25.0% |
!! | ATCATTTTGTGGGATTAATT+TGG | + | chr4_4:59684023-59684042 | Msa0691520:intron | 25.0% |
!! | TCATTTTGTGGGATTAATTT+GGG | + | chr4_4:59684024-59684043 | Msa0691520:intron | 25.0% |
! | GTTAATTATGATACCTTCAT+TGG | + | chr4_4:59684073-59684092 | Msa0691520:intron | 25.0% |
!! | GTGATTTGAGTTATAAAACT+CGG | - | chr4_4:59684256-59684275 | None:intergenic | 25.0% |
!! | AATGGTTTGTAGATATAATC+TGG | + | chr4_4:59684330-59684349 | Msa0691520:intron | 25.0% |
! | GTTAGAACCATAAAGAAAAT+AGG | - | chr4_4:59684428-59684447 | None:intergenic | 25.0% |
!! | ATATTTTACATGTGTATACC+AGG | + | chr4_4:59684490-59684509 | Msa0691520:CDS | 25.0% |
!! | TTTTTATCTTTCCTTACTAC+TGG | - | chr4_4:59684587-59684606 | None:intergenic | 25.0% |
! | TTGAAAGAGAAATATTACAC+TGG | - | chr4_4:59684624-59684643 | None:intergenic | 25.0% |
! | AACATGAAATGAGTTAGTAA+AGG | - | chr4_4:59685249-59685268 | None:intergenic | 25.0% |
! | TTTACTAACTCATTTCATGT+TGG | + | chr4_4:59685248-59685267 | Msa0691520:intron | 25.0% |
! | ATGTTATAGAAAAGAAGGAT+CGG | - | chr4_4:59685364-59685383 | None:intergenic | 25.0% |
! | GAGATATGTTATAGAAAAGA+AGG | - | chr4_4:59685369-59685388 | None:intergenic | 25.0% |
! | TAGAAAGATTACAACAATTC+TGG | - | chr4_4:59685391-59685410 | None:intergenic | 25.0% |
! | TCTTTCTATATCTGAAAAAG+GGG | + | chr4_4:59685403-59685422 | Msa0691520:intron | 25.0% |
! | TTTGAAAAAGGACAAAAGAA+AGG | - | chr4_4:59685529-59685548 | None:intergenic | 25.0% |
!!! | TTTCTTTTGTCCTTTTTCAA+AGG | + | chr4_4:59685528-59685547 | Msa0691520:intron | 25.0% |
! | ACTAACCAAAATTACTTCTT+TGG | + | chr4_4:59685596-59685615 | Msa0691520:intron | 25.0% |
! | ACTATGTAAATCAAGGATAA+AGG | - | chr4_4:59685895-59685914 | None:intergenic | 25.0% |
! | TTTATCCTTGATTTACATAG+TGG | + | chr4_4:59685894-59685913 | Msa0691520:intron | 25.0% |
! | TACATAGTGGTTTCTATATT+TGG | + | chr4_4:59685907-59685926 | Msa0691520:intron | 25.0% |
!!! | AAAGTTTTTAAAAGGATCGA+GGG | - | chr4_4:59686037-59686056 | None:intergenic | 25.0% |
!!! | AAAAGTTTTTAAAAGGATCG+AGG | - | chr4_4:59686038-59686057 | None:intergenic | 25.0% |
!! | AATATTCTGTTTGCATGTTT+TGG | - | chr4_4:59686152-59686171 | None:intergenic | 25.0% |
!! | AGATATGAAAGAACTTTTGT+CGG | + | chr4_4:59686196-59686215 | Msa0691520:CDS | 25.0% |
! | AATAGTTCATATATAGGTAG+AGG | - | chr4_4:59686357-59686376 | None:intergenic | 25.0% |
! | ATGCTATATAACCTGAAAAT+AGG | - | chr4_4:59686432-59686451 | None:intergenic | 25.0% |
! | TATATACTATAACCAGCTTT+GGG | - | chr4_4:59686490-59686509 | None:intergenic | 25.0% |
! | ATATATACTATAACCAGCTT+TGG | - | chr4_4:59686491-59686510 | None:intergenic | 25.0% |
!! | TAAAATTTTATCCACACTCT+TGG | - | chr4_4:59686543-59686562 | None:intergenic | 25.0% |
! | AAACAAGTAACAATGAAAGA+AGG | - | chr4_4:59686567-59686586 | None:intergenic | 25.0% |
! | TTTACCAGAAAATTAGGTAT+CGG | - | chr4_4:59686605-59686624 | None:intergenic | 25.0% |
! | ATTGTGTTTACCAGAAAATT+AGG | - | chr4_4:59686611-59686630 | None:intergenic | 25.0% |
! | ACTAATGCAGATATGATATT+TGG | + | chr4_4:59686678-59686697 | Msa0691520:CDS | 25.0% |
! | AACCTTAAATGCATTTGATA+GGG | - | chr4_4:59686775-59686794 | None:intergenic | 25.0% |
!! | CTTTTAAACTGCTAATTCTA+CGG | + | chr4_4:59686917-59686936 | Msa0691520:intron | 25.0% |
! | TTATATCTTAGATACAACTC+AGG | - | chr4_4:59686952-59686971 | None:intergenic | 25.0% |
! | TATACATGCTTCTCATTTAT+TGG | + | chr4_4:59687237-59687256 | Msa0691520:intron | 25.0% |
! | ATGTAAATCACCTATATAAC+TGG | + | chr4_4:59687363-59687382 | Msa0691520:intron | 25.0% |
! | TGTAAATCACCTATATAACT+GGG | + | chr4_4:59687364-59687383 | Msa0691520:intron | 25.0% |
! | AATTACATTATACTCAGAAG+TGG | - | chr4_4:59687458-59687477 | None:intergenic | 25.0% |
! | ACTGTAGCTATTCATATATT+CGG | + | chr4_4:59687811-59687830 | Msa0691520:CDS | 25.0% |
! | AGTACAATACAATATTCTGA+TGG | + | chr4_4:59687935-59687954 | Msa0691520:intron | 25.0% |
! | TGCTTGAAGATATTACAAAA+AGG | - | chr4_4:59688327-59688346 | None:intergenic | 25.0% |
GAGAGATTGAAGAAGAATAA+AGG | - | chr4_4:59680840-59680859 | None:intergenic | 30.0% | |
GTTATCAGAAATGGACAATT+GGG | - | chr4_4:59680886-59680905 | None:intergenic | 30.0% | |
GCATAAAAGGTTATCAGAAA+TGG | - | chr4_4:59680895-59680914 | None:intergenic | 30.0% | |
TCCATACATTACCCAAATAA+AGG | + | chr4_4:59681458-59681477 | Msa0691520:five_prime_UTR | 30.0% | |
! | TCCTTTATTTGGGTAATGTA+TGG | - | chr4_4:59681462-59681481 | None:intergenic | 30.0% |
!! | GGATGGATTATCCTTTATTT+GGG | - | chr4_4:59681472-59681491 | None:intergenic | 30.0% |
!! | TGGATGGATTATCCTTTATT+TGG | - | chr4_4:59681473-59681492 | None:intergenic | 30.0% |
AAATAGAAAATGGAGGTTGA+AGG | - | chr4_4:59681627-59681646 | None:intergenic | 30.0% | |
! | AAAAGGGTGAATTACCTTTT+TGG | - | chr4_4:59681851-59681870 | None:intergenic | 30.0% |
ACGGATCTATCAACAAAAAA+GGG | - | chr4_4:59681876-59681895 | None:intergenic | 30.0% | |
AACGGATCTATCAACAAAAA+AGG | - | chr4_4:59681877-59681896 | None:intergenic | 30.0% | |
!!! | GATTTGGGTATTTATTTTGG+AGG | + | chr4_4:59681941-59681960 | Msa0691520:intron | 30.0% |
!! | TTTTGGAGGGTTTATAATTC+TGG | + | chr4_4:59681955-59681974 | Msa0691520:intron | 30.0% |
TTTGGAGGGTTTATAATTCT+GGG | + | chr4_4:59681956-59681975 | Msa0691520:intron | 30.0% | |
AGAGAGAAAACCTATAGATT+CGG | + | chr4_4:59682549-59682568 | Msa0691520:intron | 30.0% | |
AAGGAGAGTAAATCAAATGA+AGG | + | chr4_4:59682576-59682595 | Msa0691520:intron | 30.0% | |
ATGTCCTAGAAAAACTACAA+GGG | + | chr4_4:59682624-59682643 | Msa0691520:intron | 30.0% | |
AAACTACAAGGGAAACTATT+AGG | + | chr4_4:59682635-59682654 | Msa0691520:intron | 30.0% | |
AACTATTAGGAAATACTTGC+AGG | + | chr4_4:59682648-59682667 | Msa0691520:intron | 30.0% | |
! | TAGTGAGTTGAACCAATATA+TGG | + | chr4_4:59682672-59682691 | Msa0691520:intron | 30.0% |
! | TAAGCTTTATCCAACTAAGT+GGG | - | chr4_4:59682742-59682761 | None:intergenic | 30.0% |
! | TTAAGCTTTATCCAACTAAG+TGG | - | chr4_4:59682743-59682762 | None:intergenic | 30.0% |
TATTTGCATCTCTTTCAAAG+AGG | + | chr4_4:59683097-59683116 | Msa0691520:CDS | 30.0% | |
TGATTTGATTCACATGTTCA+AGG | - | chr4_4:59683184-59683203 | None:intergenic | 30.0% | |
TCAAATCAATGACTACTATG+TGG | + | chr4_4:59683196-59683215 | Msa0691520:intron | 30.0% | |
! | AGCATGCTTTAAACAACAAT+CGG | + | chr4_4:59683316-59683335 | Msa0691520:intron | 30.0% |
TTTGTGAATCAAGGACATAT+TGG | - | chr4_4:59683358-59683377 | None:intergenic | 30.0% | |
!! | ATTGCTTTGTTTGTGAATCA+AGG | - | chr4_4:59683367-59683386 | None:intergenic | 30.0% |
ATTGATATGAGTATTAAGGG+TGG | + | chr4_4:59683396-59683415 | Msa0691520:intron | 30.0% | |
TTACATGCGACATAATGTAA+TGG | - | chr4_4:59683695-59683714 | None:intergenic | 30.0% | |
! | AAAGCATGAGACAGTTTTTA+GGG | - | chr4_4:59683930-59683949 | None:intergenic | 30.0% |
! | ACTAAGAAGCAATCATTTTG+TGG | + | chr4_4:59684012-59684031 | Msa0691520:intron | 30.0% |
! | CTAAGAAGCAATCATTTTGT+GGG | + | chr4_4:59684013-59684032 | Msa0691520:intron | 30.0% |
AATTGTGAGACTATTTGCTT+TGG | + | chr4_4:59684113-59684132 | Msa0691520:intron | 30.0% | |
! | GCTTTGGTATAATTGCATTT+TGG | + | chr4_4:59684129-59684148 | Msa0691520:intron | 30.0% |
AGTTATAAAACTCGGCATTT+AGG | - | chr4_4:59684248-59684267 | None:intergenic | 30.0% | |
GCTTCTATTCAACATTTCAA+TGG | + | chr4_4:59684312-59684331 | Msa0691520:intron | 30.0% | |
AAATATTCCAACTGTCAAGA+AGG | - | chr4_4:59684379-59684398 | None:intergenic | 30.0% | |
! | TTTGCTGCCTATTTTCTTTA+TGG | + | chr4_4:59684418-59684437 | Msa0691520:CDS | 30.0% |
TATGCAATTGGCTATGTATA+TGG | + | chr4_4:59684517-59684536 | Msa0691520:CDS | 30.0% | |
TTACTACTGGAACAAAACAA+TGG | - | chr4_4:59684574-59684593 | None:intergenic | 30.0% | |
!! | ATTGTTTTGTTCCAGTAGTA+AGG | + | chr4_4:59684573-59684592 | Msa0691520:intron | 30.0% |
AGCTTGTCACAATAAACTTA+TGG | + | chr4_4:59684728-59684747 | Msa0691520:intron | 30.0% | |
CAATGAAAGGATAAAATCAG+AGG | - | chr4_4:59684802-59684821 | None:intergenic | 30.0% | |
TCCTTTCATTGTTCATAAAC+AGG | + | chr4_4:59684811-59684830 | Msa0691520:intron | 30.0% | |
ACCTGTTTATGAACAATGAA+AGG | - | chr4_4:59684815-59684834 | None:intergenic | 30.0% | |
TTCATTGTTCATAAACAGGT+TGG | + | chr4_4:59684815-59684834 | Msa0691520:intron | 30.0% | |
!!! | ATGCTTCCATTTGCTATTTT+GGG | + | chr4_4:59684884-59684903 | Msa0691520:CDS | 30.0% |
ACAAATCCCAAAATAGCAAA+TGG | - | chr4_4:59684893-59684912 | None:intergenic | 30.0% | |
AGAGATCGAAAACAATATCA+AGG | - | chr4_4:59684979-59684998 | None:intergenic | 30.0% | |
TTTCGATCTCTAAACTACTT+TGG | + | chr4_4:59684988-59685007 | Msa0691520:intron | 30.0% | |
TGTGTAAATATAGATTGGTG+TGG | - | chr4_4:59685193-59685212 | None:intergenic | 30.0% | |
CGAGTTGTGTAAATATAGAT+TGG | - | chr4_4:59685198-59685217 | None:intergenic | 30.0% | |
AATAAACTCAACAAGCACAA+AGG | - | chr4_4:59685290-59685309 | None:intergenic | 30.0% | |
AAAAGGACAAAAGAAAGGAA+CGG | - | chr4_4:59685524-59685543 | None:intergenic | 30.0% | |
! | TAGGACCAAAGAAGTAATTT+TGG | - | chr4_4:59685604-59685623 | None:intergenic | 30.0% |
! | TTATTTTCCCAGACATGAAA+GGG | - | chr4_4:59685671-59685690 | None:intergenic | 30.0% |
TTTCAATTACCGGAAATGTT+AGG | + | chr4_4:59685733-59685752 | Msa0691520:intron | 30.0% | |
!!! | TATCTTTTTTGATGCACAGA+TGG | + | chr4_4:59685815-59685834 | Msa0691520:intron | 30.0% |
!!! | ATCTTTTTTGATGCACAGAT+GGG | + | chr4_4:59685816-59685835 | Msa0691520:intron | 30.0% |
AGAAACCACTATGTAAATCA+AGG | - | chr4_4:59685902-59685921 | None:intergenic | 30.0% | |
AATAGCTGAGAAATATTGAC+AGG | - | chr4_4:59685978-59685997 | None:intergenic | 30.0% | |
! | GTTACTGAATTCCTATTTTC+AGG | + | chr4_4:59686418-59686437 | Msa0691520:intron | 30.0% |
ATAGCATACAACTTTGTCAT+CGG | + | chr4_4:59686445-59686464 | Msa0691520:CDS | 30.0% | |
ATATACTATAACCAGCTTTG+GGG | - | chr4_4:59686489-59686508 | None:intergenic | 30.0% | |
TTACCAGAAAATTAGGTATC+GGG | - | chr4_4:59686604-59686623 | None:intergenic | 30.0% | |
CTGGTAAACACAATGTTAAT+CGG | + | chr4_4:59686617-59686636 | Msa0691520:intron | 30.0% | |
AATGCAGATATGATATTTGG+AGG | + | chr4_4:59686681-59686700 | Msa0691520:CDS | 30.0% | |
TACAATTGTATGCGGAATAT+TGG | + | chr4_4:59686707-59686726 | Msa0691520:CDS | 30.0% | |
ACAATTGTATGCGGAATATT+GGG | + | chr4_4:59686708-59686727 | Msa0691520:CDS | 30.0% | |
TAGTCATGTAATCAAGAACA+AGG | - | chr4_4:59686749-59686768 | None:intergenic | 30.0% | |
CAACCTTAAATGCATTTGAT+AGG | - | chr4_4:59686776-59686795 | None:intergenic | 30.0% | |
! | CTATCAAATGCATTTAAGGT+TGG | + | chr4_4:59686774-59686793 | Msa0691520:intron | 30.0% |
! | AGTTTTCTTCACATAGAGAA+GGG | - | chr4_4:59687175-59687194 | None:intergenic | 30.0% |
! | AAGTTTTCTTCACATAGAGA+AGG | - | chr4_4:59687176-59687195 | None:intergenic | 30.0% |
! | GAGAAGCATGTATATAGTTT+AGG | - | chr4_4:59687231-59687250 | None:intergenic | 30.0% |
GATTAACTTCCCAGTTATAT+AGG | - | chr4_4:59687376-59687395 | None:intergenic | 30.0% | |
ACAATACAATATTCTGATGG+CGG | + | chr4_4:59687938-59687957 | Msa0691520:intron | 30.0% | |
TACAGGATCATATTAACAAC+TGG | + | chr4_4:59687970-59687989 | Msa0691520:intron | 30.0% | |
! | TATTGTTGTTAGAATCAACG+CGG | - | chr4_4:59688003-59688022 | None:intergenic | 30.0% |
TGTAGCATCATATAATAGCA+TGG | + | chr4_4:59688117-59688136 | Msa0691520:intron | 30.0% | |
ACTATGCAAAAATATTCCTG+TGG | - | chr4_4:59688193-59688212 | None:intergenic | 30.0% | |
!! | AGGAATATTTTTGCATAGTG+TGG | + | chr4_4:59688194-59688213 | Msa0691520:intron | 30.0% |
ACAAAAAGGTTAACCTTCTT+GGG | - | chr4_4:59688313-59688332 | None:intergenic | 30.0% | |
TACAAAAAGGTTAACCTTCT+TGG | - | chr4_4:59688314-59688333 | None:intergenic | 30.0% | |
TCAGAAAAAACACGTCAAAA+AGG | + | chr4_4:59688483-59688502 | Msa0691520:three_prime_UTR | 30.0% | |
! | AAAACACGTCAAAAAGGTTT+TGG | + | chr4_4:59688489-59688508 | Msa0691520:three_prime_UTR | 30.0% |
! | AAACACGTCAAAAAGGTTTT+GGG | + | chr4_4:59688490-59688509 | Msa0691520:three_prime_UTR | 30.0% |
!! | ATCTTTTTGCTTTTGCTTAG+TGG | + | chr4_4:59688670-59688689 | Msa0691520:three_prime_UTR | 30.0% |
ATGTTTATGTTTCACCATCT+TGG | + | chr4_4:59688734-59688753 | Msa0691520:three_prime_UTR | 30.0% | |
TGTTTATGTTTCACCATCTT+GGG | + | chr4_4:59688735-59688754 | Msa0691520:three_prime_UTR | 30.0% | |
GGTTATCAGAAATGGACAAT+TGG | - | chr4_4:59680887-59680906 | None:intergenic | 35.0% | |
CAAATCTACAACATTGGTCA+TGG | + | chr4_4:59681095-59681114 | Msa0691520:five_prime_UTR | 35.0% | |
AAGGAGAAATAGAAAACGGA+TGG | - | chr4_4:59681337-59681356 | None:intergenic | 35.0% | |
GTTCTTGTTGACAATGATGT+TGG | - | chr4_4:59681518-59681537 | None:intergenic | 35.0% | |
TAAACCTTCTTCTTTCTACC+TGG | + | chr4_4:59681588-59681607 | Msa0691520:five_prime_UTR | 35.0% | |
! | GAAGTTGTTGTTGAAGGTTT+CGG | - | chr4_4:59681746-59681765 | None:intergenic | 35.0% |
! | GAAGAAGAAGTTGTTGTTGA+AGG | - | chr4_4:59681752-59681771 | None:intergenic | 35.0% |
CTTCTTGGTTTACACCAAAA+AGG | + | chr4_4:59681834-59681853 | Msa0691520:CDS | 35.0% | |
TCAACAAAAAAGGGGGAAAA+GGG | - | chr4_4:59681867-59681886 | None:intergenic | 35.0% | |
ATCAACAAAAAAGGGGGAAA+AGG | - | chr4_4:59681868-59681887 | None:intergenic | 35.0% | |
GGATCTATCAACAAAAAAGG+GGG | - | chr4_4:59681874-59681893 | None:intergenic | 35.0% | |
CGGATCTATCAACAAAAAAG+GGG | - | chr4_4:59681875-59681894 | None:intergenic | 35.0% | |
GATTGGTATTTGACTAATGC+AGG | + | chr4_4:59682041-59682060 | Msa0691520:intron | 35.0% | |
! | ATAGCTAGCAATGGTGTTAA+TGG | + | chr4_4:59682206-59682225 | Msa0691520:CDS | 35.0% |
! | GGGAATTGAGATTGAGATTT+TGG | + | chr4_4:59682500-59682519 | Msa0691520:intron | 35.0% |
! | AACCTATAGATTCGGTAGTA+AGG | + | chr4_4:59682557-59682576 | Msa0691520:intron | 35.0% |
GATGTCCTAGAAAAACTACA+AGG | + | chr4_4:59682623-59682642 | Msa0691520:intron | 35.0% | |
! | GTTTCCCTTGTAGTTTTTCT+AGG | - | chr4_4:59682631-59682650 | None:intergenic | 35.0% |
!! | ATTGTTTTGTACTTCCGTGT+AGG | + | chr4_4:59682995-59683014 | Msa0691520:intron | 35.0% |
!! | TTGTTTTGTACTTCCGTGTA+GGG | + | chr4_4:59682996-59683015 | Msa0691520:intron | 35.0% |
!! | AGTTCTCTCATCTGCTTTTA+TGG | + | chr4_4:59683050-59683069 | Msa0691520:CDS | 35.0% |
TAACCCAATACTGAGAACTT+TGG | + | chr4_4:59683497-59683516 | Msa0691520:intron | 35.0% | |
GGGTTTACACTGCAAAATAT+AGG | - | chr4_4:59683595-59683614 | None:intergenic | 35.0% | |
GTAAACCCCTTTAGACTTAT+TGG | + | chr4_4:59683607-59683626 | Msa0691520:CDS | 35.0% | |
CAACTCCAATAAGTCTAAAG+GGG | - | chr4_4:59683615-59683634 | None:intergenic | 35.0% | |
CCAACTCCAATAAGTCTAAA+GGG | - | chr4_4:59683616-59683635 | None:intergenic | 35.0% | |
TCCAACTCCAATAAGTCTAA+AGG | - | chr4_4:59683617-59683636 | None:intergenic | 35.0% | |
GTGGTCTTTCTTTCAATTTC+TGG | + | chr4_4:59683668-59683687 | Msa0691520:CDS | 35.0% | |
!! | GAAAGCATGAGACAGTTTTT+AGG | - | chr4_4:59683931-59683950 | None:intergenic | 35.0% |
AATATGAGCACAATAGACGA+TGG | - | chr4_4:59683971-59683990 | None:intergenic | 35.0% | |
CGTCTATTGTGCTCATATTT+AGG | + | chr4_4:59683972-59683991 | Msa0691520:intron | 35.0% | |
ACGTATTAATGACCCAATGA+AGG | - | chr4_4:59684089-59684108 | None:intergenic | 35.0% | |
CTCAAATCACTACGGAAATT+TGG | + | chr4_4:59684266-59684285 | Msa0691520:intron | 35.0% | |
TTTCTTACCTTCTTGACAGT+TGG | + | chr4_4:59684369-59684388 | Msa0691520:intron | 35.0% | |
!! | TGGTTCTAACCTTCTTATAC+TGG | + | chr4_4:59684438-59684457 | Msa0691520:CDS | 35.0% |
GATACATAGCCAGTATAAGA+AGG | - | chr4_4:59684450-59684469 | None:intergenic | 35.0% | |
CTATGTATCAGAAAACAGTG+TGG | + | chr4_4:59684461-59684480 | Msa0691520:CDS | 35.0% | |
! | TTTTACATGTGTATACCAGG+CGG | + | chr4_4:59684493-59684512 | Msa0691520:CDS | 35.0% |
AGAAATATCTTAAACAGGGG+AGG | + | chr4_4:59684682-59684701 | Msa0691520:intron | 35.0% | |
!! | AAACAGGTTGGAAGTCATTT+TGG | + | chr4_4:59684827-59684846 | Msa0691520:intron | 35.0% |
!!! | GATGCTTCCATTTGCTATTT+TGG | + | chr4_4:59684883-59684902 | Msa0691520:CDS | 35.0% |
ATGAAGCCTTTGCAGTTAAA+AGG | + | chr4_4:59684914-59684933 | Msa0691520:CDS | 35.0% | |
CTCTAAACTACTTTGGATAC+AGG | + | chr4_4:59684995-59685014 | Msa0691520:intron | 35.0% | |
!!! | GCACATTTTTTGAATCAGCA+GGG | - | chr4_4:59685027-59685046 | None:intergenic | 35.0% |
!!! | AGCACATTTTTTGAATCAGC+AGG | - | chr4_4:59685028-59685047 | None:intergenic | 35.0% |
!! | TGCTGATTCAAAAAATGTGC+TGG | + | chr4_4:59685027-59685046 | Msa0691520:CDS | 35.0% |
!!! | TGTTTTAGACTAGTTTGGTG+AGG | + | chr4_4:59685089-59685108 | Msa0691520:intron | 35.0% |
TAAAAAAAGCAATCCAGCAC+AGG | - | chr4_4:59685332-59685351 | None:intergenic | 35.0% | |
TCTCAACAATCAGGGTTTAA+TGG | - | chr4_4:59685450-59685469 | None:intergenic | 35.0% | |
GAGAACATTCTCAACAATCA+GGG | - | chr4_4:59685458-59685477 | None:intergenic | 35.0% | |
AATATTTCCCCTTTCATGTC+TGG | + | chr4_4:59685660-59685679 | Msa0691520:intron | 35.0% | |
ATATTTCCCCTTTCATGTCT+GGG | + | chr4_4:59685661-59685680 | Msa0691520:intron | 35.0% | |
! | TATTTTCCCAGACATGAAAG+GGG | - | chr4_4:59685670-59685689 | None:intergenic | 35.0% |
!! | GTTATTTTCCCAGACATGAA+AGG | - | chr4_4:59685672-59685691 | None:intergenic | 35.0% |
CACCTATGTCTTTCAATTAC+CGG | + | chr4_4:59685723-59685742 | Msa0691520:intron | 35.0% | |
TTCCGGTAATTGAAAGACAT+AGG | - | chr4_4:59685728-59685747 | None:intergenic | 35.0% | |
!!! | TCTTTTTTGATGCACAGATG+GGG | + | chr4_4:59685817-59685836 | Msa0691520:intron | 35.0% |
ATAAAGGTGAAGTTCTCACT+TGG | - | chr4_4:59685879-59685898 | None:intergenic | 35.0% | |
TTATTGTATCTCCAAGTGTG+TGG | + | chr4_4:59686070-59686089 | Msa0691520:intron | 35.0% | |
! | GAAAGAACTTTTGTCGGATA+AGG | + | chr4_4:59686202-59686221 | Msa0691520:CDS | 35.0% |
CATATATAGGTAGAGGAGAA+TGG | - | chr4_4:59686350-59686369 | None:intergenic | 35.0% | |
GGAGGAATTACAATTGTATG+CGG | + | chr4_4:59686699-59686718 | Msa0691520:CDS | 35.0% | |
CACCCTATCAAATGCATTTA+AGG | + | chr4_4:59686770-59686789 | Msa0691520:CDS | 35.0% | |
TTCAAGGTAACTAGTTAGGA+TGG | - | chr4_4:59687016-59687035 | None:intergenic | 35.0% | |
AGAGTTCAAGGTAACTAGTT+AGG | - | chr4_4:59687020-59687039 | None:intergenic | 35.0% | |
CTCTCATTGACAACATTAGT+CGG | + | chr4_4:59687049-59687068 | Msa0691520:CDS | 35.0% | |
! | ATACATGCTTTTGAATGCGA+AGG | - | chr4_4:59687095-59687114 | None:intergenic | 35.0% |
! | TTCGCATTCAAAAGCATGTA+TGG | + | chr4_4:59687094-59687113 | Msa0691520:CDS | 35.0% |
!! | TTCCTAGCTCTTTTTGCTAT+TGG | + | chr4_4:59687118-59687137 | Msa0691520:CDS | 35.0% |
TCCAAACCTAATGTTGTGTT+TGG | + | chr4_4:59687409-59687428 | Msa0691520:intron | 35.0% | |
TCCAAACACAACATTAGGTT+TGG | - | chr4_4:59687413-59687432 | None:intergenic | 35.0% | |
AGTCATCCAAACACAACATT+AGG | - | chr4_4:59687418-59687437 | None:intergenic | 35.0% | |
TACGAATGAGGACAAAATTG+AGG | + | chr4_4:59687589-59687608 | Msa0691520:intron | 35.0% | |
GATGATGTAGAATGTAGAGA+TGG | + | chr4_4:59687667-59687686 | Msa0691520:intron | 35.0% | |
TGGAGACATACATAATTCAC+AGG | - | chr4_4:59687748-59687767 | None:intergenic | 35.0% | |
TCAAACTTGGCTTAACACAA+TGG | - | chr4_4:59687768-59687787 | None:intergenic | 35.0% | |
ATTGTGTTAAGCCAAGTTTG+AGG | + | chr4_4:59687767-59687786 | Msa0691520:CDS | 35.0% | |
! | TTGTCCAGGTTAGCATTTTT+AGG | + | chr4_4:59687863-59687882 | Msa0691520:intron | 35.0% |
TACACCTAAAAATGCTAACC+TGG | - | chr4_4:59687870-59687889 | None:intergenic | 35.0% | |
GGTTTATTGGTAAGTCATCA+TGG | + | chr4_4:59688045-59688064 | Msa0691520:intron | 35.0% | |
TCATGATACTTTGTTACCAC+AGG | + | chr4_4:59688174-59688193 | Msa0691520:intron | 35.0% | |
CATCATGTATCAAAGGTAGA+AGG | + | chr4_4:59688240-59688259 | Msa0691520:CDS | 35.0% | |
AATGTACGAAACAAACTACG+TGG | - | chr4_4:59688588-59688607 | None:intergenic | 35.0% | |
!! | TTGCTTTTGCTTAGTGGAAA+TGG | + | chr4_4:59688676-59688695 | Msa0691520:three_prime_UTR | 35.0% |
ATCAGAAATGGACAATTGGG+TGG | - | chr4_4:59680883-59680902 | None:intergenic | 40.0% | |
AGTAGTCAAAGCTAGATGAC+TGG | - | chr4_4:59681057-59681076 | None:intergenic | 40.0% | |
!! | ACAAGTTTGTTGTTGCTGCA+GGG | - | chr4_4:59681185-59681204 | None:intergenic | 40.0% |
! | TGTTTGGTTCCACAGAAGAA+GGG | - | chr4_4:59681784-59681803 | None:intergenic | 40.0% |
! | ATGTTTGGTTCCACAGAAGA+AGG | - | chr4_4:59681785-59681804 | None:intergenic | 40.0% |
TTCTTCTGTGGAACCAAACA+TGG | + | chr4_4:59681784-59681803 | Msa0691520:CDS | 40.0% | |
ATGTTGAACTATTTGGACCG+AGG | + | chr4_4:59682179-59682198 | Msa0691520:CDS | 40.0% | |
! | AATGGTGTTAATGGACATCG+TGG | + | chr4_4:59682215-59682234 | Msa0691520:CDS | 40.0% |
! | ATGGTGTTAATGGACATCGT+GGG | + | chr4_4:59682216-59682235 | Msa0691520:CDS | 40.0% |
ACACAGAGTCATGAATGACA+TGG | + | chr4_4:59682387-59682406 | Msa0691520:intron | 40.0% | |
TTCTCTCTACATGCCCAAAA+GGG | - | chr4_4:59682537-59682556 | None:intergenic | 40.0% | |
TTTCTCTCTACATGCCCAAA+AGG | - | chr4_4:59682538-59682557 | None:intergenic | 40.0% | |
CTCCTTACTACCGAATCTAT+AGG | - | chr4_4:59682562-59682581 | None:intergenic | 40.0% | |
AAGGATAGTAAGATCACGAG+AGG | + | chr4_4:59682595-59682614 | Msa0691520:intron | 40.0% | |
TGTAGATGATCCCACTTAGT+TGG | + | chr4_4:59682729-59682748 | Msa0691520:intron | 40.0% | |
CTATCATGGTATGAAACACG+TGG | - | chr4_4:59682914-59682933 | None:intergenic | 40.0% | |
! | TGTTTTGTACTTCCGTGTAG+GGG | + | chr4_4:59682997-59683016 | Msa0691520:intron | 40.0% |
AAGTTAAAATCCCCCCTACA+CGG | - | chr4_4:59683012-59683031 | None:intergenic | 40.0% | |
!! | CTCTCATCTGCTTTTATGGT+TGG | + | chr4_4:59683054-59683073 | Msa0691520:CDS | 40.0% |
ATGACTACTATGTGGCTCAT+TGG | + | chr4_4:59683204-59683223 | Msa0691520:intron | 40.0% | |
TGACTACTATGTGGCTCATT+GGG | + | chr4_4:59683205-59683224 | Msa0691520:intron | 40.0% | |
GGTCCAAAGTTCTCAGTATT+GGG | - | chr4_4:59683503-59683522 | None:intergenic | 40.0% | |
AGGTCCAAAGTTCTCAGTAT+TGG | - | chr4_4:59683504-59683523 | None:intergenic | 40.0% | |
CCCTTTAGACTTATTGGAGT+TGG | + | chr4_4:59683613-59683632 | Msa0691520:CDS | 40.0% | |
TTGGAGTTGGATTGTCAGTT+TGG | + | chr4_4:59683626-59683645 | Msa0691520:CDS | 40.0% | |
GAAAGAAAGACCACAGCATA+AGG | - | chr4_4:59683662-59683681 | None:intergenic | 40.0% | |
AGTAACAAACCTGTGAAGCT+GGG | - | chr4_4:59683905-59683924 | None:intergenic | 40.0% | |
AAGTAACAAACCTGTGAAGC+TGG | - | chr4_4:59683906-59683925 | None:intergenic | 40.0% | |
GCAATTGGCTATGTATATGG+TGG | + | chr4_4:59684520-59684539 | Msa0691520:CDS | 40.0% | |
GGGGAGGTAATTAAAAGAGT+AGG | + | chr4_4:59684698-59684717 | Msa0691520:intron | 40.0% | |
!! | AGGTTGGAAGTCATTTTGGT+TGG | + | chr4_4:59684831-59684850 | Msa0691520:intron | 40.0% |
!! | TGTGCACCTTTTAACTGCAA+AGG | - | chr4_4:59684923-59684942 | None:intergenic | 40.0% |
ATAGTACCTTGAACTCCCAA+AGG | - | chr4_4:59685067-59685086 | None:intergenic | 40.0% | |
! | GTGCATGTTGTGTTACTACA+TGG | + | chr4_4:59685159-59685178 | Msa0691520:intron | 40.0% |
CAGCACAGGAGAAAAAAATC+AGG | - | chr4_4:59685318-59685337 | None:intergenic | 40.0% | |
!!! | CTGATTTTTTTCTCCTGTGC+TGG | + | chr4_4:59685316-59685335 | Msa0691520:intron | 40.0% |
GGAGAACATTCTCAACAATC+AGG | - | chr4_4:59685459-59685478 | None:intergenic | 40.0% | |
!!! | TCCTTTTTCAAAGGCAAGTG+AGG | + | chr4_4:59685537-59685556 | Msa0691520:intron | 40.0% |
!!! | CCTTTTTCAAAGGCAAGTGA+GGG | + | chr4_4:59685538-59685557 | Msa0691520:intron | 40.0% |
GATAATCATTCTCAGCTGGA+GGG | - | chr4_4:59686015-59686034 | None:intergenic | 40.0% | |
! | GTTTTTGTCGTCAACGTTCT+AGG | + | chr4_4:59686224-59686243 | Msa0691520:CDS | 40.0% |
TTCATCTAATGCCAAGAGTG+TGG | + | chr4_4:59686529-59686548 | Msa0691520:intron | 40.0% | |
! | ATGCCCGATACCTAATTTTC+TGG | + | chr4_4:59686598-59686617 | Msa0691520:intron | 40.0% |
TTTACAGGAGAGACTTAGGA+AGG | - | chr4_4:59686983-59687002 | None:intergenic | 40.0% | |
GGAATTTACAGGAGAGACTT+AGG | - | chr4_4:59686987-59687006 | None:intergenic | 40.0% | |
GATGGAGCAATGGAATTTAC+AGG | - | chr4_4:59686998-59687017 | None:intergenic | 40.0% | |
AACTAGTTAGGATGGAGCAA+TGG | - | chr4_4:59687008-59687027 | None:intergenic | 40.0% | |
GAGAAGCTGAAAAGAGTTCA+AGG | - | chr4_4:59687032-59687051 | None:intergenic | 40.0% | |
TCATTGACAACATTAGTCGG+TGG | + | chr4_4:59687052-59687071 | Msa0691520:CDS | 40.0% | |
CACCAATAGCAAAAAGAGCT+AGG | - | chr4_4:59687123-59687142 | None:intergenic | 40.0% | |
!!! | ACTACTTGTTTTTGCCACTC+AGG | + | chr4_4:59687144-59687163 | Msa0691520:CDS | 40.0% |
!! | ATTGATAGTGGCCTCAAACT+TGG | - | chr4_4:59687781-59687800 | None:intergenic | 40.0% |
! | AAGTTTGAGGCCACTATCAA+TGG | + | chr4_4:59687780-59687799 | Msa0691520:CDS | 40.0% |
GTAGACATAGCCATTGATAG+TGG | - | chr4_4:59687793-59687812 | None:intergenic | 40.0% | |
! | TTTTTCCAGCAGCTGCAATA+TGG | + | chr4_4:59688024-59688043 | Msa0691520:CDS | 40.0% |
ATAAACCATATTGCAGCTGC+TGG | - | chr4_4:59688032-59688051 | None:intergenic | 40.0% | |
GCAGCTGCAATATGGTTTAT+TGG | + | chr4_4:59688032-59688051 | Msa0691520:CDS | 40.0% | |
GAGTGAGCATCATGTATCAA+AGG | + | chr4_4:59688233-59688252 | Msa0691520:CDS | 40.0% | |
! | TATATGCAATCGGAAAGTGC+TGG | + | chr4_4:59688426-59688445 | Msa0691520:three_prime_UTR | 40.0% |
TTTACATGATGTGCCCAAGA+TGG | - | chr4_4:59688751-59688770 | None:intergenic | 40.0% | |
!! | CACAAGTTTGTTGTTGCTGC+AGG | - | chr4_4:59681186-59681205 | None:intergenic | 45.0% |
ACAAGAGAGTTTCGAAGCTG+CGG | + | chr4_4:59681542-59681561 | Msa0691520:five_prime_UTR | 45.0% | |
CATGCCAGGTAGAAAGAAGA+AGG | - | chr4_4:59681595-59681614 | None:intergenic | 45.0% | |
! | GAAGGTAACAAAAGCATGCC+AGG | - | chr4_4:59681609-59681628 | None:intergenic | 45.0% |
GAAGGTTTCGGTTCATGTTC+AGG | - | chr4_4:59681734-59681753 | None:intergenic | 45.0% | |
AACACCTAACCCTTCTTCTG+TGG | + | chr4_4:59681772-59681791 | Msa0691520:CDS | 45.0% | |
AGAAGTTGCAGGAATCATGG+TGG | - | chr4_4:59681819-59681838 | None:intergenic | 45.0% | |
CCAAGAAGTTGCAGGAATCA+TGG | - | chr4_4:59681822-59681841 | None:intergenic | 45.0% | |
CCATGATTCCTGCAACTTCT+TGG | + | chr4_4:59681819-59681838 | Msa0691520:CDS | 45.0% | |
GGTGTAAACCAAGAAGTTGC+AGG | - | chr4_4:59681830-59681849 | None:intergenic | 45.0% | |
CATTGCTAGCTATTGCTCCT+CGG | - | chr4_4:59682199-59682218 | None:intergenic | 45.0% | |
ACTGATGGTATCTGCAAGTC+TGG | + | chr4_4:59682245-59682264 | Msa0691520:CDS | 45.0% | |
! | TGGTGATAAATGCCCCCTTT+TGG | + | chr4_4:59682520-59682539 | Msa0691520:intron | 45.0% |
! | GGTGATAAATGCCCCCTTTT+GGG | + | chr4_4:59682521-59682540 | Msa0691520:intron | 45.0% |
TCTCTCTACATGCCCAAAAG+GGG | - | chr4_4:59682536-59682555 | None:intergenic | 45.0% | |
AGTAAGATCACGAGAGGCAA+AGG | + | chr4_4:59682601-59682620 | Msa0691520:intron | 45.0% | |
ACACGTGGAAAAGCTCATAC+AGG | - | chr4_4:59682899-59682918 | None:intergenic | 45.0% | |
! | GTTTTGTACTTCCGTGTAGG+GGG | + | chr4_4:59682998-59683017 | Msa0691520:intron | 45.0% |
! | TTTTGTACTTCCGTGTAGGG+GGG | + | chr4_4:59682999-59683018 | Msa0691520:intron | 45.0% |
GTGCGTGTACTTGAAAGAGA+AGG | - | chr4_4:59683524-59683543 | None:intergenic | 45.0% | |
ACTGTTGCAACCTTATGCTG+TGG | + | chr4_4:59683649-59683668 | Msa0691520:CDS | 45.0% | |
CTTATTCTCTCTAGGCTCGT+TGG | + | chr4_4:59683825-59683844 | Msa0691520:intron | 45.0% | |
! | GGGGCGTTATCATCAATGAA+AGG | - | chr4_4:59683885-59683904 | None:intergenic | 45.0% |
GTAACAAACCTGTGAAGCTG+GGG | - | chr4_4:59683904-59683923 | None:intergenic | 45.0% | |
ATACCAGGCGGATATGCAAT+TGG | + | chr4_4:59684505-59684524 | Msa0691520:CDS | 45.0% | |
! | TGGCTATGTATATGGTGGAG+TGG | + | chr4_4:59684525-59684544 | Msa0691520:CDS | 45.0% |
! | TTGGTTGGCGTTATGCGTTT+TGG | + | chr4_4:59684846-59684865 | Msa0691520:CDS | 45.0% |
! | TGGTTGGCGTTATGCGTTTT+GGG | + | chr4_4:59684847-59684866 | Msa0691520:CDS | 45.0% |
GCAGTTGAGACAGTTCCTTT+GGG | + | chr4_4:59685049-59685068 | Msa0691520:CDS | 45.0% | |
! | ACAGTTCCTTTGGGAGTTCA+AGG | + | chr4_4:59685058-59685077 | Msa0691520:CDS | 45.0% |
! | CCCTCACTTGCCTTTGAAAA+AGG | - | chr4_4:59685541-59685560 | None:intergenic | 45.0% |
! | TTTTTGATGCACAGATGGGG+AGG | + | chr4_4:59685820-59685839 | Msa0691520:intron | 45.0% |
AGGTGAAGTTCTCACTTGGA+AGG | - | chr4_4:59685875-59685894 | None:intergenic | 45.0% | |
GGATAATCATTCTCAGCTGG+AGG | - | chr4_4:59686016-59686035 | None:intergenic | 45.0% | |
GAGGGATAATCATTCTCAGC+TGG | - | chr4_4:59686019-59686038 | None:intergenic | 45.0% | |
GTGCATCAGTCACTTAGAGA+TGG | - | chr4_4:59686099-59686118 | None:intergenic | 45.0% | |
! | TCATCGGTGCTTACTCGTAT+TGG | + | chr4_4:59686461-59686480 | Msa0691520:CDS | 45.0% |
! | CATCGGTGCTTACTCGTATT+GGG | + | chr4_4:59686462-59686481 | Msa0691520:CDS | 45.0% |
! | ATCGGTGCTTACTCGTATTG+GGG | + | chr4_4:59686463-59686482 | Msa0691520:CDS | 45.0% |
GGAATATTGGGCACTTTAGC+AGG | + | chr4_4:59686720-59686739 | Msa0691520:CDS | 45.0% | |
ATATTGGGCACTTTAGCAGG+AGG | + | chr4_4:59686723-59686742 | Msa0691520:CDS | 45.0% | |
TTCTTGGGATTGAGGTTCTG+CGG | - | chr4_4:59688298-59688317 | None:intergenic | 45.0% | |
GGTTAACCTTCTTGGGATTG+AGG | - | chr4_4:59688306-59688325 | None:intergenic | 45.0% | |
CCTGTCTTCTCTTCAAGCAA+TGG | - | chr4_4:59688359-59688378 | None:intergenic | 45.0% | |
CCATTGCTTGAAGAGAAGAC+AGG | + | chr4_4:59688356-59688375 | Msa0691520:three_prime_UTR | 45.0% | |
!! | AAAGTGCTGGACACACGTTT+AGG | + | chr4_4:59688439-59688458 | Msa0691520:three_prime_UTR | 45.0% |
!! | ATTATTAATTAAATAGAAAA+TGG | - | chr4_4:59681637-59681656 | None:intergenic | 5.0% |
GAAATGGACAATTGGGTGGC+TGG | - | chr4_4:59680879-59680898 | None:intergenic | 50.0% | |
GTTGTTGCTGCAGGGTATGA+GGG | - | chr4_4:59681177-59681196 | None:intergenic | 50.0% | |
TGTTGTTGCTGCAGGGTATG+AGG | - | chr4_4:59681178-59681197 | None:intergenic | 50.0% | |
CAAAGTGACGAGGATGTGGA+TGG | - | chr4_4:59681489-59681508 | None:intergenic | 50.0% | |
TCGTCAAAGTGACGAGGATG+TGG | - | chr4_4:59681493-59681512 | None:intergenic | 50.0% | |
!! | TTGGTGTCGTCAAAGTGACG+AGG | - | chr4_4:59681499-59681518 | None:intergenic | 50.0% |
CAAGAGAGTTTCGAAGCTGC+GGG | + | chr4_4:59681543-59681562 | Msa0691520:five_prime_UTR | 50.0% | |
AAGAGAGTTTCGAAGCTGCG+GGG | + | chr4_4:59681544-59681563 | Msa0691520:five_prime_UTR | 50.0% | |
GGTTCCACAGAAGAAGGGTT+AGG | - | chr4_4:59681779-59681798 | None:intergenic | 50.0% | |
!! | AGGAATCATGGTGGACTTGG+GGG | - | chr4_4:59681810-59681829 | None:intergenic | 50.0% |
!! | CAGGAATCATGGTGGACTTG+GGG | - | chr4_4:59681811-59681830 | None:intergenic | 50.0% |
!! | GCAGGAATCATGGTGGACTT+GGG | - | chr4_4:59681812-59681831 | None:intergenic | 50.0% |
!! | TGCAGGAATCATGGTGGACT+TGG | - | chr4_4:59681813-59681832 | None:intergenic | 50.0% |
CGAGGAGCAATAGCTAGCAA+TGG | + | chr4_4:59682197-59682216 | Msa0691520:CDS | 50.0% | |
! | GGTATCTGCAAGTCTGGAAC+AGG | + | chr4_4:59682251-59682270 | Msa0691520:CDS | 50.0% |
CTCTCTACATGCCCAAAAGG+GGG | - | chr4_4:59682535-59682554 | None:intergenic | 50.0% | |
TAGCCAATTGCATATCCGCC+TGG | - | chr4_4:59684511-59684530 | None:intergenic | 50.0% | |
!! | TTGGCGTTATGCGTTTTGGG+TGG | + | chr4_4:59684850-59684869 | Msa0691520:CDS | 50.0% |
GGCAGTTGAGACAGTTCCTT+TGG | + | chr4_4:59685048-59685067 | Msa0691520:CDS | 50.0% | |
AGAGATGGATGCCACACACT+TGG | - | chr4_4:59686084-59686103 | None:intergenic | 50.0% | |
!!! | GTCGGTGGTGCGTTTTGTTT+TGG | + | chr4_4:59687067-59687086 | Msa0691520:CDS | 50.0% |
!! | AGAGAAGGGAAGTACCTGAG+TGG | - | chr4_4:59687161-59687180 | None:intergenic | 50.0% |
ACCTGGACAACTCCAACAAG+AGG | - | chr4_4:59687853-59687872 | None:intergenic | 50.0% | |
GCGGTCTTCTCTTCAAGCAA+CGG | - | chr4_4:59688279-59688298 | None:intergenic | 50.0% | |
GCAGAACCTCAATCCCAAGA+AGG | + | chr4_4:59688297-59688316 | Msa0691520:CDS | 50.0% | |
! | CTCTTCAAGCAATGGTGCTG+TGG | - | chr4_4:59688351-59688370 | None:intergenic | 50.0% |
! | GGCTGGCGGCTTGAGTTTTT+GGG | - | chr4_4:59680862-59680881 | None:intergenic | 55.0% |
! | TGGCTGGCGGCTTGAGTTTT+TGG | - | chr4_4:59680863-59680882 | None:intergenic | 55.0% |
ATGGACAATTGGGTGGCTGG+CGG | - | chr4_4:59680876-59680895 | None:intergenic | 55.0% | |
AGAGAGTTTCGAAGCTGCGG+GGG | + | chr4_4:59681545-59681564 | Msa0691520:five_prime_UTR | 55.0% | |
CATCGTGGGAGTTGCACTGA+TGG | + | chr4_4:59682230-59682249 | Msa0691520:CDS | 55.0% | |
CTCTCTAGGCTCGTTGGTGT+TGG | + | chr4_4:59683831-59683850 | Msa0691520:intron | 55.0% | |
! | TGATAACGCCCCAGCTTCAC+AGG | + | chr4_4:59683893-59683912 | Msa0691520:CDS | 55.0% |
!! | GCGTTATGCGTTTTGGGTGG+AGG | + | chr4_4:59684853-59684872 | Msa0691520:CDS | 55.0% |
GACAACTCCAACAAGAGGCG+CGG | - | chr4_4:59687848-59687867 | None:intergenic | 55.0% | |
GCCTCTTGTTGGAGTTGTCC+AGG | + | chr4_4:59687849-59687868 | Msa0691520:CDS | 55.0% | |
! | GATGGCGGCTCTATGCATAC+AGG | + | chr4_4:59687953-59687972 | Msa0691520:intron | 55.0% |
TTTCGAAGCTGCGGGGGTGA+AGG | + | chr4_4:59681551-59681570 | Msa0691520:five_prime_UTR | 60.0% | |
GTGGACTTGGGGGCCATGTT+TGG | - | chr4_4:59681800-59681819 | None:intergenic | 60.0% | |
!! | TAGGCTCGTTGGTGTTGGCG+AGG | + | chr4_4:59683836-59683855 | Msa0691520:intron | 60.0% |
TCGTATTGGGGCCCCAAAGC+TGG | + | chr4_4:59686475-59686494 | Msa0691520:CDS | 60.0% | |
GTTCCTTCCGCGCCTCTTGT+TGG | + | chr4_4:59687838-59687857 | Msa0691520:CDS | 60.0% | |
! | ACTCCAACAAGAGGCGCGGA+AGG | - | chr4_4:59687844-59687863 | None:intergenic | 60.0% |
CTCTTCAAGCAACGGCGCAG+TGG | - | chr4_4:59688271-59688290 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 59680797 | 59688801 | 59680797 | ID=Msa0691520;Name=Msa0691520 |
chr4_4 | mRNA | 59680797 | 59688801 | 59680797 | ID=Msa0691520-mRNA-1;Parent=Msa0691520;Name=Msa0691520-mRNA-1;_AED=0.08;_eAED=0.09;_QI=922|0.93|0.93|1|1|1|16|478|554 |
chr4_4 | exon | 59680797 | 59681855 | 59680797 | ID=Msa0691520-mRNA-1:exon:16226;Parent=Msa0691520-mRNA-1 |
chr4_4 | exon | 59682151 | 59682279 | 59682151 | ID=Msa0691520-mRNA-1:exon:16227;Parent=Msa0691520-mRNA-1 |
chr4_4 | exon | 59683017 | 59683118 | 59683017 | ID=Msa0691520-mRNA-1:exon:16228;Parent=Msa0691520-mRNA-1 |
chr4_4 | exon | 59683606 | 59683710 | 59683606 | ID=Msa0691520-mRNA-1:exon:16229;Parent=Msa0691520-mRNA-1 |
chr4_4 | exon | 59683839 | 59683914 | 59683839 | ID=Msa0691520-mRNA-1:exon:16230;Parent=Msa0691520-mRNA-1 |
chr4_4 | exon | 59684388 | 59684546 | 59684388 | ID=Msa0691520-mRNA-1:exon:16231;Parent=Msa0691520-mRNA-1 |
chr4_4 | exon | 59684833 | 59684935 | 59684833 | ID=Msa0691520-mRNA-1:exon:16232;Parent=Msa0691520-mRNA-1 |
chr4_4 | exon | 59685017 | 59685079 | 59685017 | ID=Msa0691520-mRNA-1:exon:16233;Parent=Msa0691520-mRNA-1 |
chr4_4 | exon | 59685834 | 59685879 | 59685834 | ID=Msa0691520-mRNA-1:exon:16234;Parent=Msa0691520-mRNA-1 |
chr4_4 | exon | 59686148 | 59686245 | 59686148 | ID=Msa0691520-mRNA-1:exon:16235;Parent=Msa0691520-mRNA-1 |
chr4_4 | exon | 59686440 | 59686516 | 59686440 | ID=Msa0691520-mRNA-1:exon:16236;Parent=Msa0691520-mRNA-1 |
chr4_4 | exon | 59686678 | 59686791 | 59686678 | ID=Msa0691520-mRNA-1:exon:16237;Parent=Msa0691520-mRNA-1 |
chr4_4 | exon | 59687046 | 59687165 | 59687046 | ID=Msa0691520-mRNA-1:exon:16238;Parent=Msa0691520-mRNA-1 |
chr4_4 | exon | 59687742 | 59687870 | 59687742 | ID=Msa0691520-mRNA-1:exon:16239;Parent=Msa0691520-mRNA-1 |
chr4_4 | exon | 59687975 | 59688053 | 59687975 | ID=Msa0691520-mRNA-1:exon:16240;Parent=Msa0691520-mRNA-1 |
chr4_4 | exon | 59688196 | 59688801 | 59688196 | ID=Msa0691520-mRNA-1:exon:16241;Parent=Msa0691520-mRNA-1 |
chr4_4 | five_prime_UTR | 59680797 | 59681718 | 59680797 | ID=Msa0691520-mRNA-1:five_prime_utr;Parent=Msa0691520-mRNA-1 |
chr4_4 | CDS | 59681719 | 59681855 | 59681719 | ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1 |
chr4_4 | CDS | 59682151 | 59682279 | 59682151 | ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1 |
chr4_4 | CDS | 59683017 | 59683118 | 59683017 | ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1 |
chr4_4 | CDS | 59683606 | 59683710 | 59683606 | ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1 |
chr4_4 | CDS | 59683839 | 59683914 | 59683839 | ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1 |
chr4_4 | CDS | 59684388 | 59684546 | 59684388 | ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1 |
chr4_4 | CDS | 59684833 | 59684935 | 59684833 | ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1 |
chr4_4 | CDS | 59685017 | 59685079 | 59685017 | ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1 |
chr4_4 | CDS | 59685834 | 59685879 | 59685834 | ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1 |
chr4_4 | CDS | 59686148 | 59686245 | 59686148 | ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1 |
chr4_4 | CDS | 59686440 | 59686516 | 59686440 | ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1 |
chr4_4 | CDS | 59686678 | 59686791 | 59686678 | ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1 |
chr4_4 | CDS | 59687046 | 59687165 | 59687046 | ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1 |
chr4_4 | CDS | 59687742 | 59687870 | 59687742 | ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1 |
chr4_4 | CDS | 59687975 | 59688053 | 59687975 | ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1 |
chr4_4 | CDS | 59688196 | 59688323 | 59688196 | ID=Msa0691520-mRNA-1:cds;Parent=Msa0691520-mRNA-1 |
chr4_4 | three_prime_UTR | 59688324 | 59688801 | 59688324 | ID=Msa0691520-mRNA-1:three_prime_utr;Parent=Msa0691520-mRNA-1 |
Gene Sequence |
Protein sequence |