Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649040 | XP_003608336.2 | 90.827 | 556 | 20 | 2 | 1 | 553 | 1 | 528 | 0.0 | 1006 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649040 | sp|Q9FLG8|SPNS2_ARATH | 62.900 | 531 | 131 | 6 | 21 | 544 | 12 | 483 | 0.0 | 648 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0115870 | Msa0649040 | -0.805231 | 1.474875e-49 | -8.615850e-47 |
| Msa0608490 | Msa0649040 | 0.944285 | 2.579334e-103 | -8.615850e-47 |
| Msa0649010 | Msa0649040 | 0.959414 | 2.045920e-117 | -8.615850e-47 |
| Msa0649040 | Msa0654520 | 0.869145 | 3.855469e-66 | -8.615850e-47 |
| Msa0649040 | Msa0691520 | 0.952812 | 1.078521e-110 | -8.615850e-47 |
| Msa0554910 | Msa0649040 | 0.946159 | 7.840058e-105 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649040 | MtrunA17_Chr4g0049371 | 90.827 | 556 | 20 | 2 | 1 | 553 | 1 | 528 | 0.0 | 1006 |
| Msa0649040 | MtrunA17_Chr2g0280091 | 66.860 | 516 | 115 | 6 | 25 | 528 | 1 | 472 | 0.0 | 677 |
| Msa0649040 | MtrunA17_Chr5g0411431 | 64.299 | 521 | 147 | 5 | 29 | 543 | 1 | 488 | 0.0 | 666 |
| Msa0649040 | MtrunA17_Chr2g0280101 | 69.302 | 215 | 31 | 2 | 60 | 271 | 1 | 183 | 1.79e-98 | 297 |
| Msa0649040 | MtrunA17_Chr2g0280111 | 57.143 | 252 | 54 | 3 | 307 | 553 | 13 | 215 | 1.55e-88 | 272 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649040 | AT2G22730.3 | 62.569 | 545 | 155 | 8 | 1 | 525 | 1 | 516 | 0.0 | 661 |
| Msa0649040 | AT5G64500.1 | 62.900 | 531 | 131 | 6 | 21 | 544 | 12 | 483 | 0.0 | 648 |
| Msa0649040 | AT2G22730.2 | 62.477 | 533 | 151 | 8 | 1 | 513 | 1 | 504 | 0.0 | 642 |
| Msa0649040 | AT2G22730.6 | 62.289 | 533 | 152 | 7 | 1 | 526 | 1 | 491 | 0.0 | 639 |
| Msa0649040 | AT2G22730.1 | 62.308 | 520 | 147 | 7 | 1 | 513 | 1 | 478 | 0.0 | 620 |
| Msa0649040 | AT5G65687.1 | 58.350 | 497 | 163 | 8 | 32 | 523 | 12 | 469 | 0.0 | 574 |
| Msa0649040 | AT2G22730.7 | 62.670 | 442 | 121 | 6 | 107 | 534 | 1 | 412 | 0.0 | 542 |
| Msa0649040 | AT2G22730.5 | 58.963 | 463 | 141 | 8 | 1 | 443 | 1 | 434 | 3.56e-179 | 515 |
| Msa0649040 | AT2G22730.4 | 57.421 | 411 | 126 | 7 | 1 | 404 | 1 | 369 | 1.12e-150 | 437 |
Find 166 sgRNAs with CRISPR-Local
Find 578 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGTCTTTCTTTCAATTTC+TGG | 0.022632 | 4_3:+55631772 | Msa0649040:CDS |
| CACCCTATCAAATGCATTTA+AGG | 0.038973 | 4_3:+55634851 | Msa0649040:CDS |
| GATGCTTCCATTTGCTATTT+TGG | 0.067366 | 4_3:+55632966 | Msa0649040:CDS |
| TGGATGGATTATCCTTTATT+TGG | 0.124107 | 4_3:-55628742 | None:intergenic |
| GTAAACCCCTTTAGACTTAT+TGG | 0.127810 | 4_3:+55631711 | Msa0649040:CDS |
| ACAAACTTGTGATTAGATTT+TGG | 0.163860 | 4_3:+55628469 | Msa0649040:five_prime_UTR |
| AATATTCTGTTTGCATGTTT+TGG | 0.190664 | 4_3:-55634230 | None:intergenic |
| CCATGATTCCTGCAACTTCT+TGG | 0.194316 | 4_3:+55629086 | Msa0649040:CDS |
| AATATAATATTATATATTAT+TGG | 0.200897 | 4_3:+55628962 | Msa0649040:five_prime_UTR |
| TACAATTGTATGCGGAATAT+TGG | 0.202232 | 4_3:+55634788 | Msa0649040:CDS |
| ATTATTAATTAAATAGAAAA+TGG | 0.207657 | 4_3:-55628906 | None:intergenic |
| CTTCTTGGTTTACACCAAAA+AGG | 0.250484 | 4_3:+55629101 | Msa0649040:CDS |
| AAACAGGTTGGAAGTCATTT+TGG | 0.253591 | 4_3:+55632910 | Msa0649040:intron |
| ACTAATGCAGATATGATATT+TGG | 0.253804 | 4_3:+55634759 | Msa0649040:CDS |
| CATCGGTGCTTACTCGTATT+GGG | 0.254283 | 4_3:+55634543 | Msa0649040:CDS |
| GATTAACATGTTGAACTATT+TGG | 0.255328 | 4_3:+55629437 | Msa0649040:CDS |
| GCAGCTGCAATATGGTTTAT+TGG | 0.257585 | 4_3:+55636648 | Msa0649040:CDS |
| ATGAAGCCTTTGCAGTTAAA+AGG | 0.258410 | 4_3:+55632997 | Msa0649040:CDS |
| TTTGAAAGAGATGCAAATAT+TGG | 0.266920 | 4_3:-55631168 | None:intergenic |
| TCATCGGTGCTTACTCGTAT+TGG | 0.285278 | 4_3:+55634542 | Msa0649040:CDS |
| GGCAGTTGAGACAGTTCCTT+TGG | 0.285577 | 4_3:+55633131 | Msa0649040:CDS |
| TAGATTTGATACTAAACTTA+TGG | 0.293376 | 4_3:-55628354 | None:intergenic |
| GAAGGTTTCGGTTCATGTTC+AGG | 0.301999 | 4_3:-55628998 | None:intergenic |
| CAACCTTAAATGCATTTGAT+AGG | 0.304914 | 4_3:-55634854 | None:intergenic |
| TTGGAGTTGGATTGTCAGTT+TGG | 0.308512 | 4_3:+55631730 | Msa0649040:CDS |
| TATATACTATAACCAGCTTT+GGG | 0.324548 | 4_3:-55634568 | None:intergenic |
| GTTCCTTCCGCGCCTCTTGT+TGG | 0.325321 | 4_3:+55636454 | Msa0649040:CDS |
| TCCTTTATTTGGGTAATGTA+TGG | 0.328422 | 4_3:-55628731 | None:intergenic |
| AGAACAAGAACAAGAGAGTT+TGG | 0.328600 | 4_3:+55628805 | Msa0649040:five_prime_UTR |
| TGCAGGAATCATGGTGGACT+TGG | 0.331502 | 4_3:-55629077 | None:intergenic |
| TGGTTCTAACCTTCTTATAC+TGG | 0.334464 | 4_3:+55632521 | Msa0649040:CDS |
| ATGTTTATGTTTCACCATCT+TGG | 0.336990 | 4_3:+55637350 | Msa0649040:three_prime_UTR |
| TTGGTTGGCGTTATGCGTTT+TGG | 0.340113 | 4_3:+55632929 | Msa0649040:CDS |
| GTTAGAACCATAAAGAAAAT+AGG | 0.340881 | 4_3:-55632508 | None:intergenic |
| ATAGCTAGCAATGGTGTTAA+TGG | 0.342905 | 4_3:+55629471 | Msa0649040:CDS |
| ACAATTGTATGCGGAATATT+GGG | 0.345355 | 4_3:+55634789 | Msa0649040:CDS |
| TATTTAAATTCGCATATGAT+TGG | 0.352036 | 4_3:-55628690 | None:intergenic |
| GGATGGATTATCCTTTATTT+GGG | 0.359939 | 4_3:-55628741 | None:intergenic |
| CACAAGTTTGTTGTTGCTGC+AGG | 0.360309 | 4_3:-55628457 | None:intergenic |
| GCATAAAAGGTTATCAGAAA+TGG | 0.366960 | 4_3:-55628165 | None:intergenic |
| TCCATACATTACCCAAATAA+AGG | 0.367294 | 4_3:+55628730 | Msa0649040:five_prime_UTR |
| TGCTTGAAGATATTACAAAA+AGG | 0.368513 | 4_3:-55636940 | None:intergenic |
| ATATATACTATAACCAGCTT+TGG | 0.369080 | 4_3:-55634569 | None:intergenic |
| CATCAAAAGATATTACAAAA+AGG | 0.379177 | 4_3:-55637173 | None:intergenic |
| GGTTATCAGAAATGGACAAT+TGG | 0.381660 | 4_3:-55628157 | None:intergenic |
| GAGAGATTGAAGAAGAATAA+AGG | 0.384408 | 4_3:-55628110 | None:intergenic |
| GAAGTTGTTGTTGAAGGTTT+CGG | 0.387496 | 4_3:-55629010 | None:intergenic |
| TGTTTATGTTTCACCATCTT+GGG | 0.390266 | 4_3:+55637351 | Msa0649040:three_prime_UTR |
| GGTGTAAACCAAGAAGTTGC+AGG | 0.391820 | 4_3:-55629094 | None:intergenic |
| GGAATATTGGGCACTTTAGC+AGG | 0.393766 | 4_3:+55634801 | Msa0649040:CDS |
| CCAACTCCAATAAGTCTAAA+GGG | 0.394466 | 4_3:-55631717 | None:intergenic |
| CCCTTTAGACTTATTGGAGT+TGG | 0.397838 | 4_3:+55631717 | Msa0649040:CDS |
| ACTGTAGCTATTCATATATT+CGG | 0.404341 | 4_3:+55636427 | Msa0649040:CDS |
| TATGCAATTGGCTATGTATA+TGG | 0.405101 | 4_3:+55632600 | Msa0649040:CDS |
| ATTTAAATTCGCATATGATT+GGG | 0.410197 | 4_3:-55628689 | None:intergenic |
| GCCTCTTGTTGGAGTTGTCC+AGG | 0.411072 | 4_3:+55636465 | Msa0649040:CDS |
| GGTTAACCTTCTTGGGATTG+AGG | 0.418224 | 4_3:-55636919 | None:intergenic |
| CTCTCTAGGCTCGTTGGTGT+TGG | 0.418538 | 4_3:+55631936 | Msa0649040:intron |
| GTTATCAGAAATGGACAATT+GGG | 0.424495 | 4_3:-55628156 | None:intergenic |
| TTCGCATTCAAAAGCATGTA+TGG | 0.429280 | 4_3:+55635710 | Msa0649040:CDS |
| ACAGTTCCTTTGGGAGTTCA+AGG | 0.434203 | 4_3:+55633141 | Msa0649040:CDS |
| CAGGAATCATGGTGGACTTG+GGG | 0.437931 | 4_3:-55629075 | None:intergenic |
| ATGTTTGGTTCCACAGAAGA+AGG | 0.439639 | 4_3:-55629049 | None:intergenic |
| ATTGATAGTGGCCTCAAACT+TGG | 0.439716 | 4_3:-55636394 | None:intergenic |
| AAGTAACAAACCTGTGAAGC+TGG | 0.442495 | 4_3:-55632008 | None:intergenic |
| TACAGGATCATATTAACAAC+TGG | 0.443836 | 4_3:+55636586 | Msa0649040:intron |
| TCCAACTCCAATAAGTCTAA+AGG | 0.446511 | 4_3:-55631718 | None:intergenic |
| CATCATGTATCAAAGGTAGA+AGG | 0.453571 | 4_3:+55636856 | Msa0649040:CDS |
| ACAAATCCCAAAATAGCAAA+TGG | 0.454056 | 4_3:-55632973 | None:intergenic |
| TGTTGTTGCTGCAGGGTATG+AGG | 0.454305 | 4_3:-55628449 | None:intergenic |
| GCAGTTGAGACAGTTCCTTT+GGG | 0.456001 | 4_3:+55633132 | Msa0649040:CDS |
| GAAAGAAAGACCACAGCATA+AGG | 0.459452 | 4_3:-55631763 | None:intergenic |
| CAAATCTACAACATTGATCA+TGG | 0.464271 | 4_3:+55628369 | Msa0649040:five_prime_UTR |
| GCAGGAATCATGGTGGACTT+GGG | 0.464706 | 4_3:-55629076 | None:intergenic |
| GTTCTTGTTGACAATGATGT+TGG | 0.465124 | 4_3:-55628787 | None:intergenic |
| GGTATCTGCAAGTCTGGAAC+AGG | 0.465998 | 4_3:+55629516 | Msa0649040:CDS |
| ATAAACCATATTGCAGCTGC+TGG | 0.467805 | 4_3:-55636645 | None:intergenic |
| CCAAGAAGTTGCAGGAATCA+TGG | 0.472191 | 4_3:-55629086 | None:intergenic |
| TATATGTTTGTATATGCAAT+CGG | 0.472667 | 4_3:+55637032 | Msa0649040:three_prime_UTR |
| GAAGAAGAAGTTGTTGTTGA+AGG | 0.473005 | 4_3:-55629016 | None:intergenic |
| AACCTTAAATGCATTTGATA+GGG | 0.476183 | 4_3:-55634853 | None:intergenic |
| AAAGTGCTGGACACACGTTT+AGG | 0.477991 | 4_3:+55637055 | Msa0649040:three_prime_UTR |
| GGTTCCACAGAAGAAGGGTT+AGG | 0.479643 | 4_3:-55629043 | None:intergenic |
| TCGTATTGGGGCCCCAAAGC+TGG | 0.481238 | 4_3:+55634556 | Msa0649040:CDS |
| TTCTTCTGTGGAACCAAACA+TGG | 0.481946 | 4_3:+55629051 | Msa0649040:CDS |
| CTTATTCTCTCTAGGCTCGT+TGG | 0.482973 | 4_3:+55631930 | Msa0649040:intron |
| AAGTTTGAGGCCACTATCAA+TGG | 0.484428 | 4_3:+55636396 | Msa0649040:CDS |
| TGATAACGCCCCAGCTTCAC+AGG | 0.486992 | 4_3:+55631998 | Msa0649040:CDS |
| GAAATGGACAATTGGGTGGC+TGG | 0.494832 | 4_3:-55628149 | None:intergenic |
| GTAGACATAGCCATTGATAG+TGG | 0.500369 | 4_3:-55636406 | None:intergenic |
| TTCTTCAAGCAATGGTGCTG+TGG | 0.504936 | 4_3:-55636964 | None:intergenic |
| ACTGATGGTATCTGCAAGTC+TGG | 0.512923 | 4_3:+55629510 | Msa0649040:CDS |
| ATACCAGGCGGATATGCAAT+TGG | 0.513392 | 4_3:+55632588 | Msa0649040:CDS |
| CAAGAGAGTTTGGAAGCTGC+GGG | 0.514497 | 4_3:+55628815 | Msa0649040:five_prime_UTR |
| TAAACCTTCTTCTTTCTACC+TGG | 0.522437 | 4_3:+55628860 | Msa0649040:five_prime_UTR |
| AATATTATATATTATTGGAA+TGG | 0.524557 | 4_3:+55628967 | Msa0649040:exon |
| AAATAGAAAATGGAGGTTGA+AGG | 0.524772 | 4_3:-55628896 | None:intergenic |
| TTGATACTAAACTTATGGTA+TGG | 0.525927 | 4_3:-55628349 | None:intergenic |
| GAGTGAGCATCATGTATCAA+AGG | 0.526813 | 4_3:+55636849 | Msa0649040:CDS |
| AGTAACAAACCTGTGAAGCT+GGG | 0.527094 | 4_3:-55632007 | None:intergenic |
| CTCTTCAAGCAACGGCGCAG+TGG | 0.528433 | 4_3:-55636884 | None:intergenic |
| AATGAAAAGAAATAATAGAA+TGG | 0.530404 | 4_3:-55628081 | None:intergenic |
| TCGTCAAAGTGACGAGGATG+TGG | 0.531526 | 4_3:-55628762 | None:intergenic |
| ATTAATTAAATAGAAAATGG+AGG | 0.532992 | 4_3:-55628903 | None:intergenic |
| CTCTCATTGACAACATTAGT+CGG | 0.535284 | 4_3:+55635665 | Msa0649040:CDS |
| AATGCAGATATGATATTTGG+AGG | 0.536029 | 4_3:+55634762 | Msa0649040:CDS |
| GAAGGTAACAAAAGCATGCC+AGG | 0.539035 | 4_3:-55628878 | None:intergenic |
| GTTGTTGCTGCAGGGTATGA+GGG | 0.539375 | 4_3:-55628448 | None:intergenic |
| TTACATGCGACATAATGTAA+TGG | 0.544368 | 4_3:-55631796 | None:intergenic |
| AACACCTAACCCTTCTTCTG+TGG | 0.544683 | 4_3:+55629039 | Msa0649040:CDS |
| GGTAGTCAAAGCTAGATGAC+TGG | 0.544697 | 4_3:-55628328 | None:intergenic |
| CATTGCTAGCTATTGCTCCT+CGG | 0.549808 | 4_3:-55629461 | None:intergenic |
| CATGCCAGGTAGAAAGAAGA+AGG | 0.550575 | 4_3:-55628864 | None:intergenic |
| AGGTGAAGTTCTCACTTGGA+AGG | 0.555161 | 4_3:-55633955 | None:intergenic |
| TTCTTGGGATTGAGGTTCTG+CGG | 0.555513 | 4_3:-55636911 | None:intergenic |
| GATACATAGCCAGTATAAGA+AGG | 0.558356 | 4_3:-55632530 | None:intergenic |
| ACTCCAACAAGAGGCGCGGA+AGG | 0.560727 | 4_3:-55636457 | None:intergenic |
| TAGCCAATTGCATATCCGCC+TGG | 0.566626 | 4_3:-55632591 | None:intergenic |
| CAAAGTGACGAGGATGTGGA+TGG | 0.567049 | 4_3:-55628758 | None:intergenic |
| ATCGGTGCTTACTCGTATTG+GGG | 0.576291 | 4_3:+55634544 | Msa0649040:CDS |
| ACAAGTTTGTTGTTGCTGCA+GGG | 0.578232 | 4_3:-55628456 | None:intergenic |
| TTTACATGATGTGCCCAAGA+TGG | 0.580075 | 4_3:-55637364 | None:intergenic |
| ATAGCATACAACTTTGTCAT+CGG | 0.582605 | 4_3:+55634526 | Msa0649040:CDS |
| ACAAGAGAGTTTGGAAGCTG+CGG | 0.586139 | 4_3:+55628814 | Msa0649040:five_prime_UTR |
| CATCGTGGGAGTTGCACTGA+TGG | 0.591365 | 4_3:+55629495 | Msa0649040:CDS |
| TGTTTGGTTCCACAGAAGAA+GGG | 0.592863 | 4_3:-55629048 | None:intergenic |
| TATTTGCATCTCTTTCAAAG+AGG | 0.593085 | 4_3:+55631172 | Msa0649040:CDS |
| AAGGAGAAATAGAAAACGGA+TGG | 0.596892 | 4_3:-55628608 | None:intergenic |
| GCGGTCTTCTCTTCAAGCAA+CGG | 0.597251 | 4_3:-55636892 | None:intergenic |
| AGAGAGTTTGGAAGCTGCGG+GGG | 0.602322 | 4_3:+55628817 | Msa0649040:five_prime_UTR |
| TGGAGACATACATAATTCAC+AGG | 0.603452 | 4_3:-55636361 | None:intergenic |
| TATATGCAATCGGAAAGTGC+TGG | 0.605386 | 4_3:+55637042 | Msa0649040:three_prime_UTR |
| ATTGTGTTAAGCCAAGTTTG+AGG | 0.607042 | 4_3:+55636383 | Msa0649040:CDS |
| TAGGCTCGTTGGTGTTGGCG+AGG | 0.608838 | 4_3:+55631941 | Msa0649040:intron |
| ATATACTATAACCAGCTTTG+GGG | 0.609629 | 4_3:-55634567 | None:intergenic |
| GGAGGAATTACAATTGTATG+CGG | 0.612364 | 4_3:+55634780 | Msa0649040:CDS |
| GTAACAAACCTGTGAAGCTG+GGG | 0.624884 | 4_3:-55632006 | None:intergenic |
| ACCTGGACAACTCCAACAAG+AGG | 0.626399 | 4_3:-55636466 | None:intergenic |
| CAACTCCAATAAGTCTAAAG+GGG | 0.627956 | 4_3:-55631716 | None:intergenic |
| CGAGGAGCAATAGCTAGCAA+TGG | 0.629263 | 4_3:+55629462 | Msa0649040:CDS |
| ATAGTACCTTGAACTCCCAA+AGG | 0.635654 | 4_3:-55633147 | None:intergenic |
| TCAAACTTGGCTTAACACAA+TGG | 0.635878 | 4_3:-55636381 | None:intergenic |
| GCAGAACCTCAATCCCAAGA+AGG | 0.639701 | 4_3:+55636913 | Msa0649040:CDS |
| ATATTGGGCACTTTAGCAGG+AGG | 0.639746 | 4_3:+55634804 | Msa0649040:CDS |
| CCATTGCTTGAAGAAAAGAC+AGG | 0.640726 | 4_3:+55636972 | Msa0649040:three_prime_UTR |
| TAGTCATGTAATCAAGAACA+AGG | 0.644078 | 4_3:-55634827 | None:intergenic |
| ACTGTTGCAACCTTATGCTG+TGG | 0.644221 | 4_3:+55631753 | Msa0649040:CDS |
| GGGGCGTTATCATCAATGAA+AGG | 0.644741 | 4_3:-55631987 | None:intergenic |
| ATCAGAAATGGACAATTGGG+TGG | 0.646003 | 4_3:-55628153 | None:intergenic |
| TGGTTATAGTATATATAACA+TGG | 0.649082 | 4_3:+55634576 | Msa0649040:CDS |
| AGGAATCATGGTGGACTTGG+GGG | 0.651174 | 4_3:-55629074 | None:intergenic |
| GACAACTCCAACAAGAGGCG+CGG | 0.651802 | 4_3:-55636461 | None:intergenic |
| ATGGACAATTGGGTGGCTGG+CGG | 0.652546 | 4_3:-55628146 | None:intergenic |
| AATGGTGTTAATGGACATCG+TGG | 0.666287 | 4_3:+55629480 | Msa0649040:CDS |
| AAGAGAGTTTGGAAGCTGCG+GGG | 0.675794 | 4_3:+55628816 | Msa0649040:five_prime_UTR |
| TGGCTATGTATATGGTGGAG+TGG | 0.682859 | 4_3:+55632608 | Msa0649040:CDS |
| ATGTTGAACTATTTGGACCG+AGG | 0.689226 | 4_3:+55629444 | Msa0649040:CDS |
| GCAATTGGCTATGTATATGG+TGG | 0.689730 | 4_3:+55632603 | Msa0649040:CDS |
| TCATTGACAACATTAGTCGG+TGG | 0.705421 | 4_3:+55635668 | Msa0649040:CDS |
| AGAAGTTGCAGGAATCATGG+TGG | 0.707926 | 4_3:-55629083 | None:intergenic |
| ATGGTGTTAATGGACATCGT+GGG | 0.725953 | 4_3:+55629481 | Msa0649040:CDS |
| AGAGAAGGGAAGTACCTGAG+TGG | 0.741711 | 4_3:-55635774 | None:intergenic |
| AATGTACGAAACAAACTACG+TGG | 0.765297 | 4_3:-55637201 | None:intergenic |
| TTGGTGTCGTCAAAGTGACG+AGG | 0.769150 | 4_3:-55628768 | None:intergenic |
| CTATGTATCAGAAAACAGTG+TGG | 0.772625 | 4_3:+55632544 | Msa0649040:CDS |
| TATTGTTGTTAGAATCAACG+CGG | 0.775609 | 4_3:-55636616 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | - | chr4_3:55628629-55628648 | None:intergenic | 0.0% |
| !! | AATATAATATTATATATTAT+TGG | + | chr4_3:55628962-55628981 | Msa0649040:five_prime_UTR | 0.0% |
| !!! | TGTCAAAATAAATTTTTTTA+AGG | + | chr4_3:55628233-55628252 | Msa0649040:five_prime_UTR | 10.0% |
| !! | AATATTATATATTATTGGAA+TGG | + | chr4_3:55628967-55628986 | Msa0649040:exon | 10.0% |
| !!! | AAAATTTGATTTTTTTGATT+TGG | + | chr4_3:55629191-55629210 | Msa0649040:intron | 10.0% |
| !!! | AAATTTGATTTTTTTGATTT+GGG | + | chr4_3:55629192-55629211 | Msa0649040:intron | 10.0% |
| !!! | TAGATAATTTTATAAAAAGT+CGG | - | chr4_3:55631569-55631588 | None:intergenic | 10.0% |
| !!! | TTGGAATATTTTATATTATA+TGG | + | chr4_3:55632471-55632490 | Msa0649040:CDS | 10.0% |
| !!! | TTTTAAATTATATTTCAAGT+GGG | - | chr4_3:55633212-55633231 | None:intergenic | 10.0% |
| !!! | ATTTTAAATTATATTTCAAG+TGG | - | chr4_3:55633213-55633232 | None:intergenic | 10.0% |
| !! | AATTAAATAAATATGAAGAA+AGG | - | chr4_3:55634343-55634362 | None:intergenic | 10.0% |
| !! | ATTGAATATTTAAATAAGTT+AGG | + | chr4_3:55635496-55635515 | Msa0649040:intron | 10.0% |
| !! | AATGAAAAGAAATAATAGAA+TGG | - | chr4_3:55628084-55628103 | None:intergenic | 15.0% |
| !!! | TGAAGTTTTTTTTTTTTCTT+TGG | - | chr4_3:55628305-55628324 | None:intergenic | 15.0% |
| !!! | TTCTACTGAAAAATATTTTT+TGG | + | chr4_3:55628575-55628594 | Msa0649040:five_prime_UTR | 15.0% |
| !! | ATTAATTAAATAGAAAATGG+AGG | - | chr4_3:55628906-55628925 | None:intergenic | 15.0% |
| !!! | CAATGTTTTTTTATTCAAAA+CGG | - | chr4_3:55629161-55629180 | None:intergenic | 15.0% |
| !! | TGAATAAAAAAACATTGAAA+AGG | + | chr4_3:55629164-55629183 | Msa0649040:intron | 15.0% |
| !!! | TTTCCCTAATTTTATTTTAT+TGG | + | chr4_3:55629256-55629275 | Msa0649040:intron | 15.0% |
| !! | CAACCAATAAAATAAAATTA+GGG | - | chr4_3:55629262-55629281 | None:intergenic | 15.0% |
| !! | ACAACCAATAAAATAAAATT+AGG | - | chr4_3:55629263-55629282 | None:intergenic | 15.0% |
| !!! | TAATTTTATTTTATTGGTTG+TGG | + | chr4_3:55629262-55629281 | Msa0649040:intron | 15.0% |
| !!! | AATTTTATTTTATTGGTTGT+GGG | + | chr4_3:55629263-55629282 | Msa0649040:intron | 15.0% |
| !!! | TATTTTTTATTATGTTGTGT+AGG | + | chr4_3:55629394-55629413 | Msa0649040:intron | 15.0% |
| !!! | TAGTTAAGTTACTAATTTTA+AGG | + | chr4_3:55629737-55629756 | Msa0649040:intron | 15.0% |
| !!! | AGATAATTTTATAAAAAGTC+GGG | - | chr4_3:55631568-55631587 | None:intergenic | 15.0% |
| !! | TATAATATAGATCACATAAA+TGG | - | chr4_3:55631654-55631673 | None:intergenic | 15.0% |
| !!! | AGATTATTTTTCAAGTTTTA+TGG | + | chr4_3:55631829-55631848 | Msa0649040:intron | 15.0% |
| !! | GAGAATAAGAAAAAAAATAA+GGG | - | chr4_3:55631919-55631938 | None:intergenic | 15.0% |
| !! | AGAGAATAAGAAAAAAAATA+AGG | - | chr4_3:55631920-55631939 | None:intergenic | 15.0% |
| !!! | TTTAAATTATATTTCAAGTG+GGG | - | chr4_3:55633211-55633230 | None:intergenic | 15.0% |
| !!! | ATTGTTGATAGAAAATTATT+TGG | - | chr4_3:55633563-55633582 | None:intergenic | 15.0% |
| !!! | ATAATTTTCTATCAACAATT+AGG | + | chr4_3:55633564-55633583 | Msa0649040:intron | 15.0% |
| !!! | AAATAACATAATTTTTCTCT+AGG | + | chr4_3:55633768-55633787 | Msa0649040:intron | 15.0% |
| !!! | ATGTTAGGTTTTTATTTTAT+TGG | + | chr4_3:55633831-55633850 | Msa0649040:intron | 15.0% |
| !! | GTAAAAAATAGTTCATATAT+AGG | - | chr4_3:55634444-55634463 | None:intergenic | 15.0% |
| !!! | TTGTTTTTTATTTAAAACCA+AGG | - | chr4_3:55635105-55635124 | None:intergenic | 15.0% |
| !!! | TTGGTTTTAAATAAAAAACA+AGG | + | chr4_3:55635104-55635123 | Msa0649040:intron | 15.0% |
| !!! | TGGTTTTAAATAAAAAACAA+GGG | + | chr4_3:55635105-55635124 | Msa0649040:intron | 15.0% |
| !! | AATTTAAAAAATTACGAATG+AGG | + | chr4_3:55636193-55636212 | Msa0649040:intron | 15.0% |
| !!! | CTGAATTTTATTTGCATAAA+AGG | - | chr4_3:55628181-55628200 | None:intergenic | 20.0% |
| !!! | TTATTTTGACAGAAATATAG+AGG | - | chr4_3:55628224-55628243 | None:intergenic | 20.0% |
| !!! | AGTTTTTTTTTTTTCTTTGG+TGG | - | chr4_3:55628302-55628321 | None:intergenic | 20.0% |
| !! | TAGATTTGATACTAAACTTA+TGG | - | chr4_3:55628357-55628376 | None:intergenic | 20.0% |
| !! | AAAAAAGGAGAAATAGAAAA+CGG | - | chr4_3:55628615-55628634 | None:intergenic | 20.0% |
| !! | TAAGATATGAACAAAAATGA+AGG | + | chr4_3:55628649-55628668 | Msa0649040:five_prime_UTR | 20.0% |
| !! | ATTTAAATTCGCATATGATT+GGG | - | chr4_3:55628692-55628711 | None:intergenic | 20.0% |
| !! | TATTTAAATTCGCATATGAT+TGG | - | chr4_3:55628693-55628712 | None:intergenic | 20.0% |
| !!! | TTTGATTTGGGTATTTATTT+TGG | + | chr4_3:55629204-55629223 | Msa0649040:intron | 20.0% |
| !!! | ATTTTATTTTATTGGTTGTG+GGG | + | chr4_3:55629264-55629283 | Msa0649040:intron | 20.0% |
| !! | TTGAATTCTTGAATAAGTTT+AGG | + | chr4_3:55629592-55629611 | Msa0649040:intron | 20.0% |
| !! | GTTAAATAAAAAAGCAATCT+TGG | + | chr4_3:55629707-55629726 | Msa0649040:intron | 20.0% |
| !!! | TTACTAATTTTAAGGAAGAA+GGG | + | chr4_3:55629745-55629764 | Msa0649040:intron | 20.0% |
| !! | TTCAATCATAAACCATATAT+TGG | - | chr4_3:55629952-55629971 | None:intergenic | 20.0% |
| !! | TTCAATCATAAACCATATAT+TGG | - | chr4_3:55629952-55629971 | None:intergenic | 20.0% |
| !! | TTCAATCATAAACCATATAT+TGG | - | chr4_3:55629952-55629971 | None:intergenic | 20.0% |
| !! | TTCAATCATAAACCATATAT+TGG | - | chr4_3:55629952-55629971 | None:intergenic | 20.0% |
| !! | TAGATAGATAGTTCAATTTA+TGG | + | chr4_3:55630862-55630881 | Msa0649040:intron | 20.0% |
| !!! | TTTATTTAAGGTATCATTGT+GGG | - | chr4_3:55631234-55631253 | None:intergenic | 20.0% |
| !!! | ATTTATTTAAGGTATCATTG+TGG | - | chr4_3:55631235-55631254 | None:intergenic | 20.0% |
| !!! | ATGTTCAAGGTATTTATTTA+AGG | - | chr4_3:55631246-55631265 | None:intergenic | 20.0% |
| !! | TATCATTGATATGAGTATTA+AGG | + | chr4_3:55631467-55631486 | Msa0649040:intron | 20.0% |
| !! | ATCATTGATATGAGTATTAA+GGG | + | chr4_3:55631468-55631487 | Msa0649040:intron | 20.0% |
| !! | GAAAAAATAAGAATATCAGA+TGG | - | chr4_3:55631897-55631916 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCTTATTCTCTCT+AGG | + | chr4_3:55631922-55631941 | Msa0649040:intron | 20.0% |
| !! | CTTAGTTTAACTAAAATATG+AGG | - | chr4_3:55632103-55632122 | None:intergenic | 20.0% |
| !!! | TTTTATAACTCAAATCACTA+CGG | + | chr4_3:55632341-55632360 | Msa0649040:intron | 20.0% |
| !! | GAAAGATAAAAAAGCAAAAT+AGG | + | chr4_3:55632678-55632697 | Msa0649040:intron | 20.0% |
| !! | CAAGTAAAAAAATATGACAA+GGG | - | chr4_3:55632850-55632869 | None:intergenic | 20.0% |
| !! | ACAAGTAAAAAAATATGACA+AGG | - | chr4_3:55632851-55632870 | None:intergenic | 20.0% |
| !!! | TTGCATTGATTTATTTATTG+TGG | + | chr4_3:55633034-55633053 | Msa0649040:intron | 20.0% |
| !!! | TATTATGTTTTAGACTAGTT+TGG | + | chr4_3:55633167-55633186 | Msa0649040:intron | 20.0% |
| !!! | TTAAATTATATTTCAAGTGG+GGG | - | chr4_3:55633210-55633229 | None:intergenic | 20.0% |
| !! | AATCTTTCTATATCTGAAAA+AGG | + | chr4_3:55633484-55633503 | Msa0649040:intron | 20.0% |
| !! | ATCTTTCTATATCTGAAAAA+GGG | + | chr4_3:55633485-55633504 | Msa0649040:intron | 20.0% |
| !! | CATAGACAATATTAAATCTT+AGG | - | chr4_3:55633706-55633725 | None:intergenic | 20.0% |
| !! | AAATAAAAACCTAACATTTC+CGG | - | chr4_3:55633828-55633847 | None:intergenic | 20.0% |
| !! | AATATTTCTCAGCTATTATA+AGG | + | chr4_3:55634064-55634083 | Msa0649040:intron | 20.0% |
| !!! | AAAGTTTTTAAAAGGATTGA+GGG | - | chr4_3:55634120-55634139 | None:intergenic | 20.0% |
| !!! | AAAAGTTTTTAAAAGGATTG+AGG | - | chr4_3:55634121-55634140 | None:intergenic | 20.0% |
| !!! | TAGCAACAAAAGTTTTTAAA+AGG | - | chr4_3:55634128-55634147 | None:intergenic | 20.0% |
| !!! | ATTTTTTGTGACTCTTATAT+AGG | + | chr4_3:55634207-55634226 | Msa0649040:intron | 20.0% |
| !! | TGGTTATAGTATATATAACA+TGG | + | chr4_3:55634576-55634595 | Msa0649040:CDS | 20.0% |
| !! | AAACAAGTAACAATAAAAGA+AGG | - | chr4_3:55634648-55634667 | None:intergenic | 20.0% |
| !! | TATATCATAGTAGTTAATAG+CGG | + | chr4_3:55634911-55634930 | Msa0649040:intron | 20.0% |
| !! | GAAACTGAAGTTATTAATTA+GGG | - | chr4_3:55635144-55635163 | None:intergenic | 20.0% |
| !! | AGAAACTGAAGTTATTAATT+AGG | - | chr4_3:55635145-55635164 | None:intergenic | 20.0% |
| !! | CAAAAAGTTATATGAAATAG+CGG | + | chr4_3:55635341-55635360 | Msa0649040:intron | 20.0% |
| !! | TAAATCATAGTAGTTAATAG+CGG | - | chr4_3:55635428-55635447 | None:intergenic | 20.0% |
| !! | ATCAAATAAAGAACTGAATT+AGG | - | chr4_3:55635470-55635489 | None:intergenic | 20.0% |
| !! | ATTTAAATAAGTTAGGTAAC+TGG | + | chr4_3:55635503-55635522 | Msa0649040:intron | 20.0% |
| !!! | TTTTTAAACTGCTAATTCTA+CGG | + | chr4_3:55635533-55635552 | Msa0649040:intron | 20.0% |
| !!! | ACATCTTTTAATATTACTCT+TGG | - | chr4_3:55636118-55636137 | None:intergenic | 20.0% |
| !! | GAGTAATATTAAAAGATGTT+AGG | + | chr4_3:55636119-55636138 | Msa0649040:intron | 20.0% |
| !! | TACGAATAAAAATAAGTGTT+TGG | - | chr4_3:55636314-55636333 | None:intergenic | 20.0% |
| !! | TATATGTTTGTATATGCAAT+CGG | + | chr4_3:55637032-55637051 | Msa0649040:three_prime_UTR | 20.0% |
| !! | AAAAAGGTTAATAGTATGTT+TGG | - | chr4_3:55637160-55637179 | None:intergenic | 20.0% |
| !! | CATCAAAAGATATTACAAAA+AGG | - | chr4_3:55637176-55637195 | None:intergenic | 20.0% |
| !!! | CTTTTTGTAATATCTTTTGA+TGG | + | chr4_3:55637174-55637193 | Msa0649040:three_prime_UTR | 20.0% |
| !! | TAAGGAGTTACTTTGAAAAA+TGG | + | chr4_3:55628251-55628270 | Msa0649040:five_prime_UTR | 25.0% |
| !! | AAGGAGTTACTTTGAAAAAT+GGG | + | chr4_3:55628252-55628271 | Msa0649040:five_prime_UTR | 25.0% |
| ! | TTGATACTAAACTTATGGTA+TGG | - | chr4_3:55628352-55628371 | None:intergenic | 25.0% |
| !! | ACAAACTTGTGATTAGATTT+TGG | + | chr4_3:55628469-55628488 | Msa0649040:five_prime_UTR | 25.0% |
| !!! | ATTTGGGTATTTATTTTGGA+GGG | + | chr4_3:55629208-55629227 | Msa0649040:intron | 25.0% |
| !!! | TTTTGAATGTTGTTGATGAT+TGG | + | chr4_3:55629290-55629309 | Msa0649040:intron | 25.0% |
| ! | TAATGCAGGTTAAAATTAAC+TGG | + | chr4_3:55629321-55629340 | Msa0649040:intron | 25.0% |
| ! | GATTAACATGTTGAACTATT+TGG | + | chr4_3:55629437-55629456 | Msa0649040:CDS | 25.0% |
| !!! | GTTACTAATTTTAAGGAAGA+AGG | + | chr4_3:55629744-55629763 | Msa0649040:intron | 25.0% |
| ! | TATATTACAGTACACTATCA+TGG | - | chr4_3:55631003-55631022 | None:intergenic | 25.0% |
| !!! | AACTTGAACAATTTTCAAGA+TGG | + | chr4_3:55631102-55631121 | Msa0649040:CDS | 25.0% |
| ! | TTTGAAAGAGATGCAAATAT+TGG | - | chr4_3:55631171-55631190 | None:intergenic | 25.0% |
| !! | TTATTTGACTTCTTAATGCT+AGG | + | chr4_3:55631327-55631346 | Msa0649040:intron | 25.0% |
| !! | ATCATTTTGTGGGATTAATT+TGG | + | chr4_3:55632128-55632147 | Msa0649040:intron | 25.0% |
| !! | TCATTTTGTGGGATTAATTT+GGG | + | chr4_3:55632129-55632148 | Msa0649040:intron | 25.0% |
| ! | TTGAATTATGATACCTTCAT+TGG | + | chr4_3:55632156-55632175 | Msa0649040:intron | 25.0% |
| ! | TGAATTATGATACCTTCATT+GGG | + | chr4_3:55632157-55632176 | Msa0649040:intron | 25.0% |
| !! | GTGATTTGAGTTATAAAACT+CGG | - | chr4_3:55632339-55632358 | None:intergenic | 25.0% |
| !! | AATGGTTTGTAGATATAATC+TGG | + | chr4_3:55632413-55632432 | Msa0649040:intron | 25.0% |
| ! | GTTAGAACCATAAAGAAAAT+AGG | - | chr4_3:55632511-55632530 | None:intergenic | 25.0% |
| !! | ATATTTTACATGTGTATACC+AGG | + | chr4_3:55632573-55632592 | Msa0649040:CDS | 25.0% |
| ! | TTACTACTGGAATAAAACAA+TGG | - | chr4_3:55632657-55632676 | None:intergenic | 25.0% |
| !!! | ATTGTTTTATTCCAGTAGTA+AGG | + | chr4_3:55632656-55632675 | Msa0649040:intron | 25.0% |
| !! | TTTTTATCTTTCCTTACTAC+TGG | - | chr4_3:55632670-55632689 | None:intergenic | 25.0% |
| ! | TTGAAAGAGAAATATTACAC+TGG | - | chr4_3:55632707-55632726 | None:intergenic | 25.0% |
| ! | AACATGAAATGAGTTAGTAA+AGG | - | chr4_3:55633332-55633351 | None:intergenic | 25.0% |
| ! | TTTACTAACTCATTTCATGT+TGG | + | chr4_3:55633331-55633350 | Msa0649040:intron | 25.0% |
| ! | ATGTTATAGAAAAGAAGGAT+CGG | - | chr4_3:55633447-55633466 | None:intergenic | 25.0% |
| ! | GAGATATGTTATAGAAAAGA+AGG | - | chr4_3:55633452-55633471 | None:intergenic | 25.0% |
| ! | TAGAAAGATTACAACAATTC+TGG | - | chr4_3:55633474-55633493 | None:intergenic | 25.0% |
| ! | TCTTTCTATATCTGAAAAAG+GGG | + | chr4_3:55633486-55633505 | Msa0649040:intron | 25.0% |
| ! | TTTGAAAAAGGACAAAAGAA+AGG | - | chr4_3:55633612-55633631 | None:intergenic | 25.0% |
| !!! | TTTCTTTTGTCCTTTTTCAA+AGG | + | chr4_3:55633611-55633630 | Msa0649040:intron | 25.0% |
| ! | ACTAACCAAAATTACTTCTT+TGG | + | chr4_3:55633679-55633698 | Msa0649040:intron | 25.0% |
| ! | ACTATGTAAATCAAGGATAA+AGG | - | chr4_3:55633978-55633997 | None:intergenic | 25.0% |
| ! | TTTATCCTTGATTTACATAG+TGG | + | chr4_3:55633977-55633996 | Msa0649040:intron | 25.0% |
| ! | TACATAGTGGTTTCTATATT+TGG | + | chr4_3:55633990-55634009 | Msa0649040:intron | 25.0% |
| !! | AATATTCTGTTTGCATGTTT+TGG | - | chr4_3:55634233-55634252 | None:intergenic | 25.0% |
| !! | AGATATGAAAGAACTTTTGT+CGG | + | chr4_3:55634277-55634296 | Msa0649040:CDS | 25.0% |
| ! | AATAGTTCATATATAGGTAG+AGG | - | chr4_3:55634438-55634457 | None:intergenic | 25.0% |
| ! | ATGCTATATAACCTGAAAAT+AGG | - | chr4_3:55634513-55634532 | None:intergenic | 25.0% |
| ! | TATATACTATAACCAGCTTT+GGG | - | chr4_3:55634571-55634590 | None:intergenic | 25.0% |
| ! | ATATATACTATAACCAGCTT+TGG | - | chr4_3:55634572-55634591 | None:intergenic | 25.0% |
| !! | TAAAATTTTATCCACACTCT+TGG | - | chr4_3:55634624-55634643 | None:intergenic | 25.0% |
| ! | TTTACCAGAAAATTAGGTAT+CGG | - | chr4_3:55634686-55634705 | None:intergenic | 25.0% |
| ! | ATTGTGTTTACCAGAAAATT+AGG | - | chr4_3:55634692-55634711 | None:intergenic | 25.0% |
| ! | ACTAATGCAGATATGATATT+TGG | + | chr4_3:55634759-55634778 | Msa0649040:CDS | 25.0% |
| ! | AACCTTAAATGCATTTGATA+GGG | - | chr4_3:55634856-55634875 | None:intergenic | 25.0% |
| ! | TTTCACGTAAAATGAAATAG+CGG | - | chr4_3:55635070-55635089 | None:intergenic | 25.0% |
| !!! | CGCTATTTCATATAACTTTT+TGG | - | chr4_3:55635343-55635362 | None:intergenic | 25.0% |
| ! | TTATATGTTAGATACAACTC+AGG | - | chr4_3:55635568-55635587 | None:intergenic | 25.0% |
| ! | TATACATGCTTCTCATTTAT+TGG | + | chr4_3:55635853-55635872 | Msa0649040:intron | 25.0% |
| ! | ATGTAAATCACCTATATAAC+TGG | + | chr4_3:55635979-55635998 | Msa0649040:intron | 25.0% |
| ! | TGTAAATCACCTATATAACT+GGG | + | chr4_3:55635980-55635999 | Msa0649040:intron | 25.0% |
| ! | AATTACATTATACTCAGAAG+TGG | - | chr4_3:55636074-55636093 | None:intergenic | 25.0% |
| !!! | TCCTTACTATTTTTTCTTTC+AGG | + | chr4_3:55636336-55636355 | Msa0649040:intron | 25.0% |
| !!! | CCTTACTATTTTTTCTTTCA+GGG | + | chr4_3:55636337-55636356 | Msa0649040:intron | 25.0% |
| ! | ACTGTAGCTATTCATATATT+CGG | + | chr4_3:55636427-55636446 | Msa0649040:CDS | 25.0% |
| ! | AGTACAATACAATATTCTGA+TGG | + | chr4_3:55636551-55636570 | Msa0649040:intron | 25.0% |
| ! | TGCTTGAAGATATTACAAAA+AGG | - | chr4_3:55636943-55636962 | None:intergenic | 25.0% |
| GAGAGATTGAAGAAGAATAA+AGG | - | chr4_3:55628113-55628132 | None:intergenic | 30.0% | |
| GTTATCAGAAATGGACAATT+GGG | - | chr4_3:55628159-55628178 | None:intergenic | 30.0% | |
| GCATAAAAGGTTATCAGAAA+TGG | - | chr4_3:55628168-55628187 | None:intergenic | 30.0% | |
| CAAATCTACAACATTGATCA+TGG | + | chr4_3:55628369-55628388 | Msa0649040:five_prime_UTR | 30.0% | |
| TCCATACATTACCCAAATAA+AGG | + | chr4_3:55628730-55628749 | Msa0649040:five_prime_UTR | 30.0% | |
| ! | TCCTTTATTTGGGTAATGTA+TGG | - | chr4_3:55628734-55628753 | None:intergenic | 30.0% |
| !! | GGATGGATTATCCTTTATTT+GGG | - | chr4_3:55628744-55628763 | None:intergenic | 30.0% |
| !! | TGGATGGATTATCCTTTATT+TGG | - | chr4_3:55628745-55628764 | None:intergenic | 30.0% |
| AAATAGAAAATGGAGGTTGA+AGG | - | chr4_3:55628899-55628918 | None:intergenic | 30.0% | |
| ACGGATCTATCAACAAAAAA+GGG | - | chr4_3:55629142-55629161 | None:intergenic | 30.0% | |
| AACGGATCTATCAACAAAAA+AGG | - | chr4_3:55629143-55629162 | None:intergenic | 30.0% | |
| !!! | GATTTGGGTATTTATTTTGG+AGG | + | chr4_3:55629207-55629226 | Msa0649040:intron | 30.0% |
| !! | TTTTGGAGGGTTTATAATTC+TGG | + | chr4_3:55629221-55629240 | Msa0649040:intron | 30.0% |
| TTTGGAGGGTTTATAATTCT+GGG | + | chr4_3:55629222-55629241 | Msa0649040:intron | 30.0% | |
| AGAGAGAAAACCTATAGATT+CGG | + | chr4_3:55629814-55629833 | Msa0649040:intron | 30.0% | |
| AAGGAGAGTAAATCAAATGA+AGG | + | chr4_3:55629841-55629860 | Msa0649040:intron | 30.0% | |
| ! | TAGTGAGTTGAACCAATATA+TGG | + | chr4_3:55629937-55629956 | Msa0649040:intron | 30.0% |
| AGAGAGAAAACCTATAGATT+CGG | + | chr4_3:55629814-55629833 | Msa0649040:intron | 30.0% | |
| AAGGAGAGTAAATCAAATGA+AGG | + | chr4_3:55629841-55629860 | Msa0649040:intron | 30.0% | |
| ! | TAGTGAGTTGAACCAATATA+TGG | + | chr4_3:55629937-55629956 | Msa0649040:intron | 30.0% |
| AGAGAGAAAACCTATAGATT+CGG | + | chr4_3:55629814-55629833 | Msa0649040:intron | 30.0% | |
| AAGGAGAGTAAATCAAATGA+AGG | + | chr4_3:55629841-55629860 | Msa0649040:intron | 30.0% | |
| ! | TAGTGAGTTGAACCAATATA+TGG | + | chr4_3:55629937-55629956 | Msa0649040:intron | 30.0% |
| AGAGAGAAAACCTATAGATT+CGG | + | chr4_3:55629814-55629833 | Msa0649040:intron | 30.0% | |
| AAGGAGAGTAAATCAAATGA+AGG | + | chr4_3:55629841-55629860 | Msa0649040:intron | 30.0% | |
| ATGTCCTAGAAAAACTACAA+GGG | + | chr4_3:55630699-55630718 | Msa0649040:intron | 30.0% | |
| AACTGTTACGAAATAATTGC+AGG | + | chr4_3:55630723-55630742 | Msa0649040:intron | 30.0% | |
| ! | TAGTGAGTTGAACCAATATA+TGG | + | chr4_3:55629937-55629956 | Msa0649040:intron | 30.0% |
| ! | TAAGCTTTATCCAACTAAGT+GGG | - | chr4_3:55630817-55630836 | None:intergenic | 30.0% |
| ! | TTAAGCTTTATCCAACTAAG+TGG | - | chr4_3:55630818-55630837 | None:intergenic | 30.0% |
| TATTTGCATCTCTTTCAAAG+AGG | + | chr4_3:55631172-55631191 | Msa0649040:CDS | 30.0% | |
| TGATTTGATTCACATGTTCA+AGG | - | chr4_3:55631259-55631278 | None:intergenic | 30.0% | |
| TCAAATCAATGACTACTATG+TGG | + | chr4_3:55631271-55631290 | Msa0649040:intron | 30.0% | |
| ! | AGCATGCTTTAAACAACAAT+CGG | + | chr4_3:55631391-55631410 | Msa0649040:intron | 30.0% |
| TTTGTGAATCAAGGACATAT+TGG | - | chr4_3:55631433-55631452 | None:intergenic | 30.0% | |
| !! | ATTGCTTTGTTTGTGAATCA+AGG | - | chr4_3:55631442-55631461 | None:intergenic | 30.0% |
| ATTGATATGAGTATTAAGGG+TGG | + | chr4_3:55631471-55631490 | Msa0649040:intron | 30.0% | |
| TAACCCAATATTGAGAACTT+TGG | + | chr4_3:55631601-55631620 | Msa0649040:intron | 30.0% | |
| TTACATGCGACATAATGTAA+TGG | - | chr4_3:55631799-55631818 | None:intergenic | 30.0% | |
| ! | AAAGCATGAGACAGTTTTTA+GGG | - | chr4_3:55632035-55632054 | None:intergenic | 30.0% |
| ! | ACTAAGAAGCAATCATTTTG+TGG | + | chr4_3:55632117-55632136 | Msa0649040:intron | 30.0% |
| ! | CTAAGAAGCAATCATTTTGT+GGG | + | chr4_3:55632118-55632137 | Msa0649040:intron | 30.0% |
| AATTGTGAGACTATTTGCTT+TGG | + | chr4_3:55632196-55632215 | Msa0649040:intron | 30.0% | |
| ! | GCTTTGGTATAATTGCATTT+TGG | + | chr4_3:55632212-55632231 | Msa0649040:intron | 30.0% |
| AGTTATAAAACTCGGCATTT+AGG | - | chr4_3:55632331-55632350 | None:intergenic | 30.0% | |
| GCTTCTATTCAACATTTCAA+TGG | + | chr4_3:55632395-55632414 | Msa0649040:intron | 30.0% | |
| AAATATTCCAACTGTCAAGA+AGG | - | chr4_3:55632462-55632481 | None:intergenic | 30.0% | |
| ! | TTTGCTGCCTATTTTCTTTA+TGG | + | chr4_3:55632501-55632520 | Msa0649040:CDS | 30.0% |
| TATGCAATTGGCTATGTATA+TGG | + | chr4_3:55632600-55632619 | Msa0649040:CDS | 30.0% | |
| AGCTTGTCACAATAAACTTA+TGG | + | chr4_3:55632811-55632830 | Msa0649040:intron | 30.0% | |
| CAATGAAAGGATAAAATCAG+AGG | - | chr4_3:55632885-55632904 | None:intergenic | 30.0% | |
| TCCTTTCATTGTTCATAAAC+AGG | + | chr4_3:55632894-55632913 | Msa0649040:intron | 30.0% | |
| ACCTGTTTATGAACAATGAA+AGG | - | chr4_3:55632898-55632917 | None:intergenic | 30.0% | |
| TTCATTGTTCATAAACAGGT+TGG | + | chr4_3:55632898-55632917 | Msa0649040:intron | 30.0% | |
| !!! | ATGCTTCCATTTGCTATTTT+GGG | + | chr4_3:55632967-55632986 | Msa0649040:CDS | 30.0% |
| ACAAATCCCAAAATAGCAAA+TGG | - | chr4_3:55632976-55632995 | None:intergenic | 30.0% | |
| AGAGATCGAAAACAATATCA+AGG | - | chr4_3:55633062-55633081 | None:intergenic | 30.0% | |
| TTTCGATCTCTAAACTACTT+TGG | + | chr4_3:55633071-55633090 | Msa0649040:intron | 30.0% | |
| TGTGTAAATATAGATTGGTG+TGG | - | chr4_3:55633276-55633295 | None:intergenic | 30.0% | |
| CGAGTTGTGTAAATATAGAT+TGG | - | chr4_3:55633281-55633300 | None:intergenic | 30.0% | |
| AATAAACTCAACAAGCACAA+AGG | - | chr4_3:55633373-55633392 | None:intergenic | 30.0% | |
| TAAAAAAAGCAATACAGCAC+AGG | - | chr4_3:55633415-55633434 | None:intergenic | 30.0% | |
| AAAAGGACAAAAGAAAGGAA+CGG | - | chr4_3:55633607-55633626 | None:intergenic | 30.0% | |
| ! | TAGGACCAAAGAAGTAATTT+TGG | - | chr4_3:55633687-55633706 | None:intergenic | 30.0% |
| ! | TTATTTTCCCAGACATGAAA+GGG | - | chr4_3:55633754-55633773 | None:intergenic | 30.0% |
| TTTCAATTACCGGAAATGTT+AGG | + | chr4_3:55633816-55633835 | Msa0649040:intron | 30.0% | |
| GAATCACAATATCTCTTCAT+TGG | + | chr4_3:55633863-55633882 | Msa0649040:intron | 30.0% | |
| !!! | TATCTTTTTTGATGCACAGA+TGG | + | chr4_3:55633898-55633917 | Msa0649040:intron | 30.0% |
| !!! | ATCTTTTTTGATGCACAGAT+GGG | + | chr4_3:55633899-55633918 | Msa0649040:intron | 30.0% |
| AGAAACCACTATGTAAATCA+AGG | - | chr4_3:55633985-55634004 | None:intergenic | 30.0% | |
| AATAGCTGAGAAATATTGAC+AGG | - | chr4_3:55634061-55634080 | None:intergenic | 30.0% | |
| ATTTATTGTATCTCCAAGTG+TGG | + | chr4_3:55634151-55634170 | Msa0649040:intron | 30.0% | |
| ! | GTTACTGAATTCCTATTTTC+AGG | + | chr4_3:55634499-55634518 | Msa0649040:intron | 30.0% |
| ATAGCATACAACTTTGTCAT+CGG | + | chr4_3:55634526-55634545 | Msa0649040:CDS | 30.0% | |
| ATATACTATAACCAGCTTTG+GGG | - | chr4_3:55634570-55634589 | None:intergenic | 30.0% | |
| TTACCAGAAAATTAGGTATC+GGG | - | chr4_3:55634685-55634704 | None:intergenic | 30.0% | |
| CTGGTAAACACAATGTTAAT+CGG | + | chr4_3:55634698-55634717 | Msa0649040:intron | 30.0% | |
| AATGCAGATATGATATTTGG+AGG | + | chr4_3:55634762-55634781 | Msa0649040:CDS | 30.0% | |
| TACAATTGTATGCGGAATAT+TGG | + | chr4_3:55634788-55634807 | Msa0649040:CDS | 30.0% | |
| ACAATTGTATGCGGAATATT+GGG | + | chr4_3:55634789-55634808 | Msa0649040:CDS | 30.0% | |
| TAGTCATGTAATCAAGAACA+AGG | - | chr4_3:55634830-55634849 | None:intergenic | 30.0% | |
| CAACCTTAAATGCATTTGAT+AGG | - | chr4_3:55634857-55634876 | None:intergenic | 30.0% | |
| ! | CTATCAAATGCATTTAAGGT+TGG | + | chr4_3:55634855-55634874 | Msa0649040:intron | 30.0% |
| TGAAAATACAAGATTCTCCT+TGG | + | chr4_3:55635085-55635104 | Msa0649040:intron | 30.0% | |
| CTCTCTTCTTTCATTCTTTA+CGG | + | chr4_3:55635163-55635182 | Msa0649040:intron | 30.0% | |
| AGAGAAGATTTAATGAAGAG+AGG | - | chr4_3:55635230-55635249 | None:intergenic | 30.0% | |
| !! | TTGAGAGAAGATGCTTTTTA+GGG | - | chr4_3:55635272-55635291 | None:intergenic | 30.0% |
| !! | TTTGAGAGAAGATGCTTTTT+AGG | - | chr4_3:55635273-55635292 | None:intergenic | 30.0% |
| ! | AGTTTTCTTCACATAGAGAA+GGG | - | chr4_3:55635791-55635810 | None:intergenic | 30.0% |
| ! | AAGTTTTCTTCACATAGAGA+AGG | - | chr4_3:55635792-55635811 | None:intergenic | 30.0% |
| ! | GAGAAGCATGTATATAGTTT+AGG | - | chr4_3:55635847-55635866 | None:intergenic | 30.0% |
| GATTAACTTCCCAGTTATAT+AGG | - | chr4_3:55635992-55636011 | None:intergenic | 30.0% | |
| CCCTGAAAGAAAAAATAGTA+AGG | - | chr4_3:55636340-55636359 | None:intergenic | 30.0% | |
| ACAATACAATATTCTGATGG+CGG | + | chr4_3:55636554-55636573 | Msa0649040:intron | 30.0% | |
| TACAGGATCATATTAACAAC+TGG | + | chr4_3:55636586-55636605 | Msa0649040:intron | 30.0% | |
| ! | TATTGTTGTTAGAATCAACG+CGG | - | chr4_3:55636619-55636638 | None:intergenic | 30.0% |
| TGTAGCATCATATAATAGCA+TGG | + | chr4_3:55636733-55636752 | Msa0649040:intron | 30.0% | |
| ACTATGCAAAAATATTCCTG+TGG | - | chr4_3:55636809-55636828 | None:intergenic | 30.0% | |
| !! | AGGAATATTTTTGCATAGTG+TGG | + | chr4_3:55636810-55636829 | Msa0649040:intron | 30.0% |
| ACAAAAAGGTTAACCTTCTT+GGG | - | chr4_3:55636929-55636948 | None:intergenic | 30.0% | |
| TACAAAAAGGTTAACCTTCT+TGG | - | chr4_3:55636930-55636949 | None:intergenic | 30.0% | |
| TCAGAAAAAACACGTCAAAA+AGG | + | chr4_3:55637099-55637118 | Msa0649040:three_prime_UTR | 30.0% | |
| ! | AAAACACGTCAAAAAGGTTT+TGG | + | chr4_3:55637105-55637124 | Msa0649040:three_prime_UTR | 30.0% |
| ! | AAACACGTCAAAAAGGTTTT+GGG | + | chr4_3:55637106-55637125 | Msa0649040:three_prime_UTR | 30.0% |
| !! | ATCTTTTTGCTTTTGCTTAG+TGG | + | chr4_3:55637286-55637305 | Msa0649040:three_prime_UTR | 30.0% |
| ATGTTTATGTTTCACCATCT+TGG | + | chr4_3:55637350-55637369 | Msa0649040:three_prime_UTR | 30.0% | |
| TGTTTATGTTTCACCATCTT+GGG | + | chr4_3:55637351-55637370 | Msa0649040:three_prime_UTR | 30.0% | |
| GGTTATCAGAAATGGACAAT+TGG | - | chr4_3:55628160-55628179 | None:intergenic | 35.0% | |
| AAGGAGAAATAGAAAACGGA+TGG | - | chr4_3:55628611-55628630 | None:intergenic | 35.0% | |
| GTTCTTGTTGACAATGATGT+TGG | - | chr4_3:55628790-55628809 | None:intergenic | 35.0% | |
| AGAACAAGAACAAGAGAGTT+TGG | + | chr4_3:55628805-55628824 | Msa0649040:five_prime_UTR | 35.0% | |
| TAAACCTTCTTCTTTCTACC+TGG | + | chr4_3:55628860-55628879 | Msa0649040:five_prime_UTR | 35.0% | |
| ! | GAAGTTGTTGTTGAAGGTTT+CGG | - | chr4_3:55629013-55629032 | None:intergenic | 35.0% |
| ! | GAAGAAGAAGTTGTTGTTGA+AGG | - | chr4_3:55629019-55629038 | None:intergenic | 35.0% |
| CTTCTTGGTTTACACCAAAA+AGG | + | chr4_3:55629101-55629120 | Msa0649040:CDS | 35.0% | |
| ! | GAAAGGGTGAATTACCTTTT+TGG | - | chr4_3:55629118-55629137 | None:intergenic | 35.0% |
| ATCAACAAAAAAGGGGGAAA+GGG | - | chr4_3:55629134-55629153 | None:intergenic | 35.0% | |
| TATCAACAAAAAAGGGGGAA+AGG | - | chr4_3:55629135-55629154 | None:intergenic | 35.0% | |
| GGATCTATCAACAAAAAAGG+GGG | - | chr4_3:55629140-55629159 | None:intergenic | 35.0% | |
| CGGATCTATCAACAAAAAAG+GGG | - | chr4_3:55629141-55629160 | None:intergenic | 35.0% | |
| GATTGGTATTTGACTAATGC+AGG | + | chr4_3:55629307-55629326 | Msa0649040:intron | 35.0% | |
| ! | ATAGCTAGCAATGGTGTTAA+TGG | + | chr4_3:55629471-55629490 | Msa0649040:CDS | 35.0% |
| ! | GGGAATTGAGATTGAGATTT+TGG | + | chr4_3:55629765-55629784 | Msa0649040:intron | 35.0% |
| ! | AACCTATAGATTCGGTAGTA+AGG | + | chr4_3:55629822-55629841 | Msa0649040:intron | 35.0% |
| ! | TTAAGCTTTATCCCACTAAG+TGG | - | chr4_3:55630008-55630027 | None:intergenic | 35.0% |
| ACTTAGTGGGATAAAGCTTA+AGG | + | chr4_3:55630007-55630026 | Msa0649040:intron | 35.0% | |
| GGATAAAGCTTAAGGAAGAA+GGG | + | chr4_3:55630015-55630034 | Msa0649040:intron | 35.0% | |
| ! | GGGAATTGAGATTGAGATTT+TGG | + | chr4_3:55629765-55629784 | Msa0649040:intron | 35.0% |
| ! | AACCTATAGATTCGGTAGTA+AGG | + | chr4_3:55629822-55629841 | Msa0649040:intron | 35.0% |
| ! | TTAAGCTTTATCCCACTAAG+TGG | - | chr4_3:55630008-55630027 | None:intergenic | 35.0% |
| ACTTAGTGGGATAAAGCTTA+AGG | + | chr4_3:55630007-55630026 | Msa0649040:intron | 35.0% | |
| GGATAAAGCTTAAGGAAGAA+GGG | + | chr4_3:55630015-55630034 | Msa0649040:intron | 35.0% | |
| ! | GGGAATTGAGATTGAGATTT+TGG | + | chr4_3:55629765-55629784 | Msa0649040:intron | 35.0% |
| ! | AACCTATAGATTCGGTAGTA+AGG | + | chr4_3:55629822-55629841 | Msa0649040:intron | 35.0% |
| ! | TTAAGCTTTATCCCACTAAG+TGG | - | chr4_3:55630008-55630027 | None:intergenic | 35.0% |
| ACTTAGTGGGATAAAGCTTA+AGG | + | chr4_3:55630007-55630026 | Msa0649040:intron | 35.0% | |
| GGATAAAGCTTAAGGAAGAA+GGG | + | chr4_3:55630015-55630034 | Msa0649040:intron | 35.0% | |
| ! | GGGAATTGAGATTGAGATTT+TGG | + | chr4_3:55629765-55629784 | Msa0649040:intron | 35.0% |
| ! | AACCTATAGATTCGGTAGTA+AGG | + | chr4_3:55629822-55629841 | Msa0649040:intron | 35.0% |
| GATGTCCTAGAAAAACTACA+AGG | + | chr4_3:55630698-55630717 | Msa0649040:intron | 35.0% | |
| ! | GTTTCCCTTGTAGTTTTTCT+AGG | - | chr4_3:55630706-55630725 | None:intergenic | 35.0% |
| !! | ATTGTTTTGTACTTCCGTGT+AGG | + | chr4_3:55631070-55631089 | Msa0649040:intron | 35.0% |
| !! | TTGTTTTGTACTTCCGTGTA+GGG | + | chr4_3:55631071-55631090 | Msa0649040:intron | 35.0% |
| !! | AGTTCTCTCATCTGCTTTTA+TGG | + | chr4_3:55631125-55631144 | Msa0649040:CDS | 35.0% |
| TCGGGCACAATAAAATGATA+AGG | - | chr4_3:55631550-55631569 | None:intergenic | 35.0% | |
| GGTCCAAAGTTCTCAATATT+GGG | - | chr4_3:55631607-55631626 | None:intergenic | 35.0% | |
| AGGTCCAAAGTTCTCAATAT+TGG | - | chr4_3:55631608-55631627 | None:intergenic | 35.0% | |
| GGGTTTACACTGCAAAATAT+AGG | - | chr4_3:55631699-55631718 | None:intergenic | 35.0% | |
| GTAAACCCCTTTAGACTTAT+TGG | + | chr4_3:55631711-55631730 | Msa0649040:CDS | 35.0% | |
| CAACTCCAATAAGTCTAAAG+GGG | - | chr4_3:55631719-55631738 | None:intergenic | 35.0% | |
| CCAACTCCAATAAGTCTAAA+GGG | - | chr4_3:55631720-55631739 | None:intergenic | 35.0% | |
| TCCAACTCCAATAAGTCTAA+AGG | - | chr4_3:55631721-55631740 | None:intergenic | 35.0% | |
| GTGGTCTTTCTTTCAATTTC+TGG | + | chr4_3:55631772-55631791 | Msa0649040:CDS | 35.0% | |
| !! | GAAAGCATGAGACAGTTTTT+AGG | - | chr4_3:55632036-55632055 | None:intergenic | 35.0% |
| AATATGAGCACAATAGACGA+TGG | - | chr4_3:55632076-55632095 | None:intergenic | 35.0% | |
| CGTCTATTGTGCTCATATTT+AGG | + | chr4_3:55632077-55632096 | Msa0649040:intron | 35.0% | |
| ACGTATTAATGACCCAATGA+AGG | - | chr4_3:55632172-55632191 | None:intergenic | 35.0% | |
| CTCAAATCACTACGGAAATT+TGG | + | chr4_3:55632349-55632368 | Msa0649040:intron | 35.0% | |
| TTTCTTACCTTCTTGACAGT+TGG | + | chr4_3:55632452-55632471 | Msa0649040:intron | 35.0% | |
| !! | TGGTTCTAACCTTCTTATAC+TGG | + | chr4_3:55632521-55632540 | Msa0649040:CDS | 35.0% |
| GATACATAGCCAGTATAAGA+AGG | - | chr4_3:55632533-55632552 | None:intergenic | 35.0% | |
| CTATGTATCAGAAAACAGTG+TGG | + | chr4_3:55632544-55632563 | Msa0649040:CDS | 35.0% | |
| ! | TTTTACATGTGTATACCAGG+CGG | + | chr4_3:55632576-55632595 | Msa0649040:CDS | 35.0% |
| !! | AAACAGGTTGGAAGTCATTT+TGG | + | chr4_3:55632910-55632929 | Msa0649040:intron | 35.0% |
| !!! | GATGCTTCCATTTGCTATTT+TGG | + | chr4_3:55632966-55632985 | Msa0649040:CDS | 35.0% |
| ATGAAGCCTTTGCAGTTAAA+AGG | + | chr4_3:55632997-55633016 | Msa0649040:CDS | 35.0% | |
| CTCTAAACTACTTTGGATAC+AGG | + | chr4_3:55633078-55633097 | Msa0649040:intron | 35.0% | |
| !!! | GCACATTTTTTGAATCAGCA+GGG | - | chr4_3:55633110-55633129 | None:intergenic | 35.0% |
| !!! | AGCACATTTTTTGAATCAGC+AGG | - | chr4_3:55633111-55633130 | None:intergenic | 35.0% |
| !! | TGCTGATTCAAAAAATGTGC+TGG | + | chr4_3:55633110-55633129 | Msa0649040:CDS | 35.0% |
| !!! | TGTTTTAGACTAGTTTGGTG+AGG | + | chr4_3:55633172-55633191 | Msa0649040:intron | 35.0% |
| TCTCAACAATCAGGGTTTAA+TGG | - | chr4_3:55633533-55633552 | None:intergenic | 35.0% | |
| GAGAACATTCTCAACAATCA+GGG | - | chr4_3:55633541-55633560 | None:intergenic | 35.0% | |
| AATATTTCCCCTTTCATGTC+TGG | + | chr4_3:55633743-55633762 | Msa0649040:intron | 35.0% | |
| ATATTTCCCCTTTCATGTCT+GGG | + | chr4_3:55633744-55633763 | Msa0649040:intron | 35.0% | |
| ! | TATTTTCCCAGACATGAAAG+GGG | - | chr4_3:55633753-55633772 | None:intergenic | 35.0% |
| !! | GTTATTTTCCCAGACATGAA+AGG | - | chr4_3:55633755-55633774 | None:intergenic | 35.0% |
| CACCTATGTCTTTCAATTAC+CGG | + | chr4_3:55633806-55633825 | Msa0649040:intron | 35.0% | |
| TTCCGGTAATTGAAAGACAT+AGG | - | chr4_3:55633811-55633830 | None:intergenic | 35.0% | |
| !!! | TCTTTTTTGATGCACAGATG+GGG | + | chr4_3:55633900-55633919 | Msa0649040:intron | 35.0% |
| ATAAAGGTGAAGTTCTCACT+TGG | - | chr4_3:55633962-55633981 | None:intergenic | 35.0% | |
| ! | GAAAGAACTTTTGTCGGATA+AGG | + | chr4_3:55634283-55634302 | Msa0649040:CDS | 35.0% |
| CATATATAGGTAGAGGAGAA+TGG | - | chr4_3:55634431-55634450 | None:intergenic | 35.0% | |
| GGAGGAATTACAATTGTATG+CGG | + | chr4_3:55634780-55634799 | Msa0649040:CDS | 35.0% | |
| CACCCTATCAAATGCATTTA+AGG | + | chr4_3:55634851-55634870 | Msa0649040:CDS | 35.0% | |
| ! | TATCCCGCTATAGCATTTTT+GGG | + | chr4_3:55635380-55635399 | Msa0649040:intron | 35.0% |
| !! | TAGTAGTTAATAGCGGATAG+CGG | - | chr4_3:55635421-55635440 | None:intergenic | 35.0% |
| TTCAAGGTAACTAGTTAGGA+TGG | - | chr4_3:55635632-55635651 | None:intergenic | 35.0% | |
| AGAGTTCAAGGTAACTAGTT+AGG | - | chr4_3:55635636-55635655 | None:intergenic | 35.0% | |
| CTCTCATTGACAACATTAGT+CGG | + | chr4_3:55635665-55635684 | Msa0649040:CDS | 35.0% | |
| ! | ATACATGCTTTTGAATGCGA+AGG | - | chr4_3:55635711-55635730 | None:intergenic | 35.0% |
| ! | TTCGCATTCAAAAGCATGTA+TGG | + | chr4_3:55635710-55635729 | Msa0649040:CDS | 35.0% |
| !! | TTCCTAGCTCTTTTTGCTAT+TGG | + | chr4_3:55635734-55635753 | Msa0649040:CDS | 35.0% |
| TCCAAACCTAATGTTGTGTT+TGG | + | chr4_3:55636025-55636044 | Msa0649040:intron | 35.0% | |
| TCCAAACACAACATTAGGTT+TGG | - | chr4_3:55636029-55636048 | None:intergenic | 35.0% | |
| AGTCATCCAAACACAACATT+AGG | - | chr4_3:55636034-55636053 | None:intergenic | 35.0% | |
| TACGAATGAGGACAAAATTG+AGG | + | chr4_3:55636205-55636224 | Msa0649040:intron | 35.0% | |
| GATGATGTAGAATGTAGAGA+TGG | + | chr4_3:55636283-55636302 | Msa0649040:intron | 35.0% | |
| TGGAGACATACATAATTCAC+AGG | - | chr4_3:55636364-55636383 | None:intergenic | 35.0% | |
| TCAAACTTGGCTTAACACAA+TGG | - | chr4_3:55636384-55636403 | None:intergenic | 35.0% | |
| ATTGTGTTAAGCCAAGTTTG+AGG | + | chr4_3:55636383-55636402 | Msa0649040:CDS | 35.0% | |
| ! | TTGTCCAGGTTAGCATTTTT+AGG | + | chr4_3:55636479-55636498 | Msa0649040:intron | 35.0% |
| TACACCTAAAAATGCTAACC+TGG | - | chr4_3:55636486-55636505 | None:intergenic | 35.0% | |
| GGTTTATTGGTAAGTCATCA+TGG | + | chr4_3:55636661-55636680 | Msa0649040:intron | 35.0% | |
| TCATGATACTTTGTTACCAC+AGG | + | chr4_3:55636790-55636809 | Msa0649040:intron | 35.0% | |
| CATCATGTATCAAAGGTAGA+AGG | + | chr4_3:55636856-55636875 | Msa0649040:CDS | 35.0% | |
| AATGTACGAAACAAACTACG+TGG | - | chr4_3:55637204-55637223 | None:intergenic | 35.0% | |
| !! | TTGCTTTTGCTTAGTGGAAA+TGG | + | chr4_3:55637292-55637311 | Msa0649040:three_prime_UTR | 35.0% |
| ATCAGAAATGGACAATTGGG+TGG | - | chr4_3:55628156-55628175 | None:intergenic | 40.0% | |
| !! | ACAAGTTTGTTGTTGCTGCA+GGG | - | chr4_3:55628459-55628478 | None:intergenic | 40.0% |
| ! | TGTTTGGTTCCACAGAAGAA+GGG | - | chr4_3:55629051-55629070 | None:intergenic | 40.0% |
| ! | ATGTTTGGTTCCACAGAAGA+AGG | - | chr4_3:55629052-55629071 | None:intergenic | 40.0% |
| TTCTTCTGTGGAACCAAACA+TGG | + | chr4_3:55629051-55629070 | Msa0649040:CDS | 40.0% | |
| ATGTTGAACTATTTGGACCG+AGG | + | chr4_3:55629444-55629463 | Msa0649040:CDS | 40.0% | |
| ! | AATGGTGTTAATGGACATCG+TGG | + | chr4_3:55629480-55629499 | Msa0649040:CDS | 40.0% |
| ! | ATGGTGTTAATGGACATCGT+GGG | + | chr4_3:55629481-55629500 | Msa0649040:CDS | 40.0% |
| ACACAGAGTCATGAATGACA+TGG | + | chr4_3:55629652-55629671 | Msa0649040:intron | 40.0% | |
| TTCTCTCTACATGCCCAAAA+GGG | - | chr4_3:55629802-55629821 | None:intergenic | 40.0% | |
| TTTCTCTCTACATGCCCAAA+AGG | - | chr4_3:55629803-55629822 | None:intergenic | 40.0% | |
| CTCCTTACTACCGAATCTAT+AGG | - | chr4_3:55629827-55629846 | None:intergenic | 40.0% | |
| AAGGATAGTAAGATCACGAG+AGG | + | chr4_3:55629860-55629879 | Msa0649040:intron | 40.0% | |
| ACTAAGTGGAATCGTCTACA+TGG | - | chr4_3:55629994-55630013 | None:intergenic | 40.0% | |
| ATGTAGACGATTCCACTTAG+TGG | + | chr4_3:55629993-55630012 | Msa0649040:intron | 40.0% | |
| TGTAGACGATTCCACTTAGT+GGG | + | chr4_3:55629994-55630013 | Msa0649040:intron | 40.0% | |
| GGGATAAAGCTTAAGGAAGA+AGG | + | chr4_3:55630014-55630033 | Msa0649040:intron | 40.0% | |
| TTCTCTCTACATGCCCAAAA+GGG | - | chr4_3:55629802-55629821 | None:intergenic | 40.0% | |
| TTTCTCTCTACATGCCCAAA+AGG | - | chr4_3:55629803-55629822 | None:intergenic | 40.0% | |
| CTCCTTACTACCGAATCTAT+AGG | - | chr4_3:55629827-55629846 | None:intergenic | 40.0% | |
| AAGGATAGTAAGATCACGAG+AGG | + | chr4_3:55629860-55629879 | Msa0649040:intron | 40.0% | |
| ACTAAGTGGAATCGTCTACA+TGG | - | chr4_3:55629994-55630013 | None:intergenic | 40.0% | |
| ATGTAGACGATTCCACTTAG+TGG | + | chr4_3:55629993-55630012 | Msa0649040:intron | 40.0% | |
| TGTAGACGATTCCACTTAGT+GGG | + | chr4_3:55629994-55630013 | Msa0649040:intron | 40.0% | |
| GGGATAAAGCTTAAGGAAGA+AGG | + | chr4_3:55630014-55630033 | Msa0649040:intron | 40.0% | |
| TTCTCTCTACATGCCCAAAA+GGG | - | chr4_3:55629802-55629821 | None:intergenic | 40.0% | |
| TTTCTCTCTACATGCCCAAA+AGG | - | chr4_3:55629803-55629822 | None:intergenic | 40.0% | |
| CTCCTTACTACCGAATCTAT+AGG | - | chr4_3:55629827-55629846 | None:intergenic | 40.0% | |
| AAGGATAGTAAGATCACGAG+AGG | + | chr4_3:55629860-55629879 | Msa0649040:intron | 40.0% | |
| ACTAAGTGGAATCGTCTACA+TGG | - | chr4_3:55629994-55630013 | None:intergenic | 40.0% | |
| ATGTAGACGATTCCACTTAG+TGG | + | chr4_3:55629993-55630012 | Msa0649040:intron | 40.0% | |
| TGTAGACGATTCCACTTAGT+GGG | + | chr4_3:55629994-55630013 | Msa0649040:intron | 40.0% | |
| GGGATAAAGCTTAAGGAAGA+AGG | + | chr4_3:55630014-55630033 | Msa0649040:intron | 40.0% | |
| TTCTCTCTACATGCCCAAAA+GGG | - | chr4_3:55629802-55629821 | None:intergenic | 40.0% | |
| TTTCTCTCTACATGCCCAAA+AGG | - | chr4_3:55629803-55629822 | None:intergenic | 40.0% | |
| CTCCTTACTACCGAATCTAT+AGG | - | chr4_3:55629827-55629846 | None:intergenic | 40.0% | |
| AAGGATAGTAAGATCACGAG+AGG | + | chr4_3:55629860-55629879 | Msa0649040:intron | 40.0% | |
| TGTAGATGATCCCACTTAGT+TGG | + | chr4_3:55630804-55630823 | Msa0649040:intron | 40.0% | |
| CTATCATGGTATGAAACACG+TGG | - | chr4_3:55630989-55631008 | None:intergenic | 40.0% | |
| ! | TGTTTTGTACTTCCGTGTAG+GGG | + | chr4_3:55631072-55631091 | Msa0649040:intron | 40.0% |
| AAGTTAAAATCCCCCCTACA+CGG | - | chr4_3:55631087-55631106 | None:intergenic | 40.0% | |
| !! | CTCTCATCTGCTTTTATGGT+TGG | + | chr4_3:55631129-55631148 | Msa0649040:CDS | 40.0% |
| ATGACTACTATGTGGCTCAT+TGG | + | chr4_3:55631279-55631298 | Msa0649040:intron | 40.0% | |
| TGACTACTATGTGGCTCATT+GGG | + | chr4_3:55631280-55631299 | Msa0649040:intron | 40.0% | |
| CCCTTTAGACTTATTGGAGT+TGG | + | chr4_3:55631717-55631736 | Msa0649040:CDS | 40.0% | |
| TTGGAGTTGGATTGTCAGTT+TGG | + | chr4_3:55631730-55631749 | Msa0649040:CDS | 40.0% | |
| GAAAGAAAGACCACAGCATA+AGG | - | chr4_3:55631766-55631785 | None:intergenic | 40.0% | |
| AGTAACAAACCTGTGAAGCT+GGG | - | chr4_3:55632010-55632029 | None:intergenic | 40.0% | |
| AAGTAACAAACCTGTGAAGC+TGG | - | chr4_3:55632011-55632030 | None:intergenic | 40.0% | |
| GCAATTGGCTATGTATATGG+TGG | + | chr4_3:55632603-55632622 | Msa0649040:CDS | 40.0% | |
| GGGGAGGTAATTAAAAGAGT+AGG | + | chr4_3:55632781-55632800 | Msa0649040:intron | 40.0% | |
| !! | AGGTTGGAAGTCATTTTGGT+TGG | + | chr4_3:55632914-55632933 | Msa0649040:intron | 40.0% |
| !! | TGTGCACCTTTTAACTGCAA+AGG | - | chr4_3:55633006-55633025 | None:intergenic | 40.0% |
| ATAGTACCTTGAACTCCCAA+AGG | - | chr4_3:55633150-55633169 | None:intergenic | 40.0% | |
| ! | GTGCATGTTGTGTTACTACA+TGG | + | chr4_3:55633242-55633261 | Msa0649040:intron | 40.0% |
| CAGCACAGGAGAAAAAAATC+AGG | - | chr4_3:55633401-55633420 | None:intergenic | 40.0% | |
| GGAGAACATTCTCAACAATC+AGG | - | chr4_3:55633542-55633561 | None:intergenic | 40.0% | |
| !!! | TCCTTTTTCAAAGGCAAGTG+AGG | + | chr4_3:55633620-55633639 | Msa0649040:intron | 40.0% |
| !!! | CCTTTTTCAAAGGCAAGTGA+GGG | + | chr4_3:55633621-55633640 | Msa0649040:intron | 40.0% |
| GATAATCATTCTCAGCTGGA+GGG | - | chr4_3:55634098-55634117 | None:intergenic | 40.0% | |
| ! | GTTTTTGTCGTCAACGTTCT+AGG | + | chr4_3:55634305-55634324 | Msa0649040:CDS | 40.0% |
| TTCATCTAATGCCAAGAGTG+TGG | + | chr4_3:55634610-55634629 | Msa0649040:intron | 40.0% | |
| ! | ATGCCCGATACCTAATTTTC+TGG | + | chr4_3:55634679-55634698 | Msa0649040:intron | 40.0% |
| ! | CTATCCCGCTATAGCATTTT+TGG | + | chr4_3:55635379-55635398 | Msa0649040:intron | 40.0% |
| ! | ATCCCGCTATAGCATTTTTG+GGG | + | chr4_3:55635381-55635400 | Msa0649040:intron | 40.0% |
| TTTACAGGAGAGACTTAGGA+AGG | - | chr4_3:55635599-55635618 | None:intergenic | 40.0% | |
| GGAATTTACAGGAGAGACTT+AGG | - | chr4_3:55635603-55635622 | None:intergenic | 40.0% | |
| GATGGAGCAATGGAATTTAC+AGG | - | chr4_3:55635614-55635633 | None:intergenic | 40.0% | |
| AACTAGTTAGGATGGAGCAA+TGG | - | chr4_3:55635624-55635643 | None:intergenic | 40.0% | |
| GAGAAGCTGAAAAGAGTTCA+AGG | - | chr4_3:55635648-55635667 | None:intergenic | 40.0% | |
| TCATTGACAACATTAGTCGG+TGG | + | chr4_3:55635668-55635687 | Msa0649040:CDS | 40.0% | |
| CACCAATAGCAAAAAGAGCT+AGG | - | chr4_3:55635739-55635758 | None:intergenic | 40.0% | |
| !!! | ACTACTTGTTTTTGCCACTC+AGG | + | chr4_3:55635760-55635779 | Msa0649040:CDS | 40.0% |
| !! | ATTGATAGTGGCCTCAAACT+TGG | - | chr4_3:55636397-55636416 | None:intergenic | 40.0% |
| ! | AAGTTTGAGGCCACTATCAA+TGG | + | chr4_3:55636396-55636415 | Msa0649040:CDS | 40.0% |
| GTAGACATAGCCATTGATAG+TGG | - | chr4_3:55636409-55636428 | None:intergenic | 40.0% | |
| ! | TTTTTCCAGCAGCTGCAATA+TGG | + | chr4_3:55636640-55636659 | Msa0649040:CDS | 40.0% |
| ATAAACCATATTGCAGCTGC+TGG | - | chr4_3:55636648-55636667 | None:intergenic | 40.0% | |
| GCAGCTGCAATATGGTTTAT+TGG | + | chr4_3:55636648-55636667 | Msa0649040:CDS | 40.0% | |
| GAGTGAGCATCATGTATCAA+AGG | + | chr4_3:55636849-55636868 | Msa0649040:CDS | 40.0% | |
| ! | CCTGTCTTTTCTTCAAGCAA+TGG | - | chr4_3:55636975-55636994 | None:intergenic | 40.0% |
| CCATTGCTTGAAGAAAAGAC+AGG | + | chr4_3:55636972-55636991 | Msa0649040:three_prime_UTR | 40.0% | |
| ! | TATATGCAATCGGAAAGTGC+TGG | + | chr4_3:55637042-55637061 | Msa0649040:three_prime_UTR | 40.0% |
| TTTACATGATGTGCCCAAGA+TGG | - | chr4_3:55637367-55637386 | None:intergenic | 40.0% | |
| GGTAGTCAAAGCTAGATGAC+TGG | - | chr4_3:55628331-55628350 | None:intergenic | 45.0% | |
| !! | CACAAGTTTGTTGTTGCTGC+AGG | - | chr4_3:55628460-55628479 | None:intergenic | 45.0% |
| ACAAGAGAGTTTGGAAGCTG+CGG | + | chr4_3:55628814-55628833 | Msa0649040:five_prime_UTR | 45.0% | |
| CATGCCAGGTAGAAAGAAGA+AGG | - | chr4_3:55628867-55628886 | None:intergenic | 45.0% | |
| ! | GAAGGTAACAAAAGCATGCC+AGG | - | chr4_3:55628881-55628900 | None:intergenic | 45.0% |
| GAAGGTTTCGGTTCATGTTC+AGG | - | chr4_3:55629001-55629020 | None:intergenic | 45.0% | |
| AACACCTAACCCTTCTTCTG+TGG | + | chr4_3:55629039-55629058 | Msa0649040:CDS | 45.0% | |
| AGAAGTTGCAGGAATCATGG+TGG | - | chr4_3:55629086-55629105 | None:intergenic | 45.0% | |
| CCAAGAAGTTGCAGGAATCA+TGG | - | chr4_3:55629089-55629108 | None:intergenic | 45.0% | |
| CCATGATTCCTGCAACTTCT+TGG | + | chr4_3:55629086-55629105 | Msa0649040:CDS | 45.0% | |
| GGTGTAAACCAAGAAGTTGC+AGG | - | chr4_3:55629097-55629116 | None:intergenic | 45.0% | |
| CATTGCTAGCTATTGCTCCT+CGG | - | chr4_3:55629464-55629483 | None:intergenic | 45.0% | |
| ACTGATGGTATCTGCAAGTC+TGG | + | chr4_3:55629510-55629529 | Msa0649040:CDS | 45.0% | |
| ! | TGGTGATAAATGCCCCCTTT+TGG | + | chr4_3:55629785-55629804 | Msa0649040:intron | 45.0% |
| ! | GGTGATAAATGCCCCCTTTT+GGG | + | chr4_3:55629786-55629805 | Msa0649040:intron | 45.0% |
| TCTCTCTACATGCCCAAAAG+GGG | - | chr4_3:55629801-55629820 | None:intergenic | 45.0% | |
| AGTAAGATCACGAGAGGCAA+AGG | + | chr4_3:55629866-55629885 | Msa0649040:intron | 45.0% | |
| ! | TGGTGATAAATGCCCCCTTT+TGG | + | chr4_3:55629785-55629804 | Msa0649040:intron | 45.0% |
| ! | GGTGATAAATGCCCCCTTTT+GGG | + | chr4_3:55629786-55629805 | Msa0649040:intron | 45.0% |
| TCTCTCTACATGCCCAAAAG+GGG | - | chr4_3:55629801-55629820 | None:intergenic | 45.0% | |
| AGTAAGATCACGAGAGGCAA+AGG | + | chr4_3:55629866-55629885 | Msa0649040:intron | 45.0% | |
| ! | TGGTGATAAATGCCCCCTTT+TGG | + | chr4_3:55629785-55629804 | Msa0649040:intron | 45.0% |
| ! | GGTGATAAATGCCCCCTTTT+GGG | + | chr4_3:55629786-55629805 | Msa0649040:intron | 45.0% |
| TCTCTCTACATGCCCAAAAG+GGG | - | chr4_3:55629801-55629820 | None:intergenic | 45.0% | |
| AGTAAGATCACGAGAGGCAA+AGG | + | chr4_3:55629866-55629885 | Msa0649040:intron | 45.0% | |
| ! | TGGTGATAAATGCCCCCTTT+TGG | + | chr4_3:55629785-55629804 | Msa0649040:intron | 45.0% |
| ! | GGTGATAAATGCCCCCTTTT+GGG | + | chr4_3:55629786-55629805 | Msa0649040:intron | 45.0% |
| TCTCTCTACATGCCCAAAAG+GGG | - | chr4_3:55629801-55629820 | None:intergenic | 45.0% | |
| AGTAAGATCACGAGAGGCAA+AGG | + | chr4_3:55629866-55629885 | Msa0649040:intron | 45.0% | |
| ACACGTGGAAAAGCTCATAC+AGG | - | chr4_3:55630974-55630993 | None:intergenic | 45.0% | |
| ! | GTTTTGTACTTCCGTGTAGG+GGG | + | chr4_3:55631073-55631092 | Msa0649040:intron | 45.0% |
| ! | TTTTGTACTTCCGTGTAGGG+GGG | + | chr4_3:55631074-55631093 | Msa0649040:intron | 45.0% |
| GTGCGTGTACTTGAAAGAGA+AGG | - | chr4_3:55631628-55631647 | None:intergenic | 45.0% | |
| ACTGTTGCAACCTTATGCTG+TGG | + | chr4_3:55631753-55631772 | Msa0649040:CDS | 45.0% | |
| CTTATTCTCTCTAGGCTCGT+TGG | + | chr4_3:55631930-55631949 | Msa0649040:intron | 45.0% | |
| ! | GGGGCGTTATCATCAATGAA+AGG | - | chr4_3:55631990-55632009 | None:intergenic | 45.0% |
| GTAACAAACCTGTGAAGCTG+GGG | - | chr4_3:55632009-55632028 | None:intergenic | 45.0% | |
| ATACCAGGCGGATATGCAAT+TGG | + | chr4_3:55632588-55632607 | Msa0649040:CDS | 45.0% | |
| ! | TGGCTATGTATATGGTGGAG+TGG | + | chr4_3:55632608-55632627 | Msa0649040:CDS | 45.0% |
| ! | TTGGTTGGCGTTATGCGTTT+TGG | + | chr4_3:55632929-55632948 | Msa0649040:CDS | 45.0% |
| ! | TGGTTGGCGTTATGCGTTTT+GGG | + | chr4_3:55632930-55632949 | Msa0649040:CDS | 45.0% |
| GCAGTTGAGACAGTTCCTTT+GGG | + | chr4_3:55633132-55633151 | Msa0649040:CDS | 45.0% | |
| ! | ACAGTTCCTTTGGGAGTTCA+AGG | + | chr4_3:55633141-55633160 | Msa0649040:CDS | 45.0% |
| ! | CCCTCACTTGCCTTTGAAAA+AGG | - | chr4_3:55633624-55633643 | None:intergenic | 45.0% |
| ! | TTTTTGATGCACAGATGGGG+AGG | + | chr4_3:55633903-55633922 | Msa0649040:intron | 45.0% |
| AGGTGAAGTTCTCACTTGGA+AGG | - | chr4_3:55633958-55633977 | None:intergenic | 45.0% | |
| GGATAATCATTCTCAGCTGG+AGG | - | chr4_3:55634099-55634118 | None:intergenic | 45.0% | |
| GAGGGATAATCATTCTCAGC+TGG | - | chr4_3:55634102-55634121 | None:intergenic | 45.0% | |
| TTAGAGATGGATGCCACACT+TGG | - | chr4_3:55634167-55634186 | None:intergenic | 45.0% | |
| GTGCATCAGTCACTTAGAGA+TGG | - | chr4_3:55634180-55634199 | None:intergenic | 45.0% | |
| ! | TCATCGGTGCTTACTCGTAT+TGG | + | chr4_3:55634542-55634561 | Msa0649040:CDS | 45.0% |
| ! | CATCGGTGCTTACTCGTATT+GGG | + | chr4_3:55634543-55634562 | Msa0649040:CDS | 45.0% |
| ! | ATCGGTGCTTACTCGTATTG+GGG | + | chr4_3:55634544-55634563 | Msa0649040:CDS | 45.0% |
| GGAATATTGGGCACTTTAGC+AGG | + | chr4_3:55634801-55634820 | Msa0649040:CDS | 45.0% | |
| ATATTGGGCACTTTAGCAGG+AGG | + | chr4_3:55634804-55634823 | Msa0649040:CDS | 45.0% | |
| AGTTAATAGCGGCGCTATAG+CGG | + | chr4_3:55634922-55634941 | Msa0649040:intron | 45.0% | |
| TATCTCATAACGCTACGCCT+TGG | - | chr4_3:55634998-55635017 | None:intergenic | 45.0% | |
| AAAACCGCTATGCAGTGTTG+CGG | - | chr4_3:55635036-55635055 | None:intergenic | 45.0% | |
| CAGATGCGTACAGATCTGAA+AGG | - | chr4_3:55635191-55635210 | None:intergenic | 45.0% | |
| GACCCCAAAAATGCTATAGC+GGG | - | chr4_3:55635386-55635405 | None:intergenic | 45.0% | |
| CGACCCCAAAAATGCTATAG+CGG | - | chr4_3:55635387-55635406 | None:intergenic | 45.0% | |
| !!! | CGCTATAGCATTTTTGGGGT+CGG | + | chr4_3:55635385-55635404 | Msa0649040:intron | 45.0% |
| TTCTTGGGATTGAGGTTCTG+CGG | - | chr4_3:55636914-55636933 | None:intergenic | 45.0% | |
| GGTTAACCTTCTTGGGATTG+AGG | - | chr4_3:55636922-55636941 | None:intergenic | 45.0% | |
| ! | TTCTTCAAGCAATGGTGCTG+TGG | - | chr4_3:55636967-55636986 | None:intergenic | 45.0% |
| !! | AAAGTGCTGGACACACGTTT+AGG | + | chr4_3:55637055-55637074 | Msa0649040:three_prime_UTR | 45.0% |
| !! | ATTATTAATTAAATAGAAAA+TGG | - | chr4_3:55628909-55628928 | None:intergenic | 5.0% |
| GAAATGGACAATTGGGTGGC+TGG | - | chr4_3:55628152-55628171 | None:intergenic | 50.0% | |
| GTTGTTGCTGCAGGGTATGA+GGG | - | chr4_3:55628451-55628470 | None:intergenic | 50.0% | |
| TGTTGTTGCTGCAGGGTATG+AGG | - | chr4_3:55628452-55628471 | None:intergenic | 50.0% | |
| CAAAGTGACGAGGATGTGGA+TGG | - | chr4_3:55628761-55628780 | None:intergenic | 50.0% | |
| TCGTCAAAGTGACGAGGATG+TGG | - | chr4_3:55628765-55628784 | None:intergenic | 50.0% | |
| !! | TTGGTGTCGTCAAAGTGACG+AGG | - | chr4_3:55628771-55628790 | None:intergenic | 50.0% |
| CAAGAGAGTTTGGAAGCTGC+GGG | + | chr4_3:55628815-55628834 | Msa0649040:five_prime_UTR | 50.0% | |
| AAGAGAGTTTGGAAGCTGCG+GGG | + | chr4_3:55628816-55628835 | Msa0649040:five_prime_UTR | 50.0% | |
| GGTTCCACAGAAGAAGGGTT+AGG | - | chr4_3:55629046-55629065 | None:intergenic | 50.0% | |
| !! | AGGAATCATGGTGGACTTGG+GGG | - | chr4_3:55629077-55629096 | None:intergenic | 50.0% |
| !! | CAGGAATCATGGTGGACTTG+GGG | - | chr4_3:55629078-55629097 | None:intergenic | 50.0% |
| !! | GCAGGAATCATGGTGGACTT+GGG | - | chr4_3:55629079-55629098 | None:intergenic | 50.0% |
| !! | TGCAGGAATCATGGTGGACT+TGG | - | chr4_3:55629080-55629099 | None:intergenic | 50.0% |
| CGAGGAGCAATAGCTAGCAA+TGG | + | chr4_3:55629462-55629481 | Msa0649040:CDS | 50.0% | |
| ! | GGTATCTGCAAGTCTGGAAC+AGG | + | chr4_3:55629516-55629535 | Msa0649040:CDS | 50.0% |
| CTCTCTACATGCCCAAAAGG+GGG | - | chr4_3:55629800-55629819 | None:intergenic | 50.0% | |
| CTCTCTACATGCCCAAAAGG+GGG | - | chr4_3:55629800-55629819 | None:intergenic | 50.0% | |
| CTCTCTACATGCCCAAAAGG+GGG | - | chr4_3:55629800-55629819 | None:intergenic | 50.0% | |
| CTCTCTACATGCCCAAAAGG+GGG | - | chr4_3:55629800-55629819 | None:intergenic | 50.0% | |
| TAGCCAATTGCATATCCGCC+TGG | - | chr4_3:55632594-55632613 | None:intergenic | 50.0% | |
| !! | TTGGCGTTATGCGTTTTGGG+TGG | + | chr4_3:55632933-55632952 | Msa0649040:CDS | 50.0% |
| GGCAGTTGAGACAGTTCCTT+TGG | + | chr4_3:55633131-55633150 | Msa0649040:CDS | 50.0% | |
| GACCGCTATGCAATAAGCCA+AGG | + | chr4_3:55634978-55634997 | Msa0649040:intron | 50.0% | |
| CGCCTTGGCTTATTGCATAG+CGG | - | chr4_3:55634983-55635002 | None:intergenic | 50.0% | |
| GGCGTAGCGTTATGAGATAG+CGG | + | chr4_3:55634999-55635018 | Msa0649040:intron | 50.0% | |
| ! | ATGAGATAGCGGCGCAATAG+CGG | + | chr4_3:55635010-55635029 | Msa0649040:intron | 50.0% |
| GAAATAGCGGTCATAGCGCT+AGG | + | chr4_3:55635354-55635373 | Msa0649040:intron | 50.0% | |
| !!! | GTCGGTGGTGCGTTTTGTTT+TGG | + | chr4_3:55635683-55635702 | Msa0649040:CDS | 50.0% |
| !! | AGAGAAGGGAAGTACCTGAG+TGG | - | chr4_3:55635777-55635796 | None:intergenic | 50.0% |
| ACCTGGACAACTCCAACAAG+AGG | - | chr4_3:55636469-55636488 | None:intergenic | 50.0% | |
| GCGGTCTTCTCTTCAAGCAA+CGG | - | chr4_3:55636895-55636914 | None:intergenic | 50.0% | |
| GCAGAACCTCAATCCCAAGA+AGG | + | chr4_3:55636913-55636932 | Msa0649040:CDS | 50.0% | |
| ! | GGCTGGCGGCTTGAGTTTTT+GGG | - | chr4_3:55628135-55628154 | None:intergenic | 55.0% |
| ! | TGGCTGGCGGCTTGAGTTTT+TGG | - | chr4_3:55628136-55628155 | None:intergenic | 55.0% |
| ATGGACAATTGGGTGGCTGG+CGG | - | chr4_3:55628149-55628168 | None:intergenic | 55.0% | |
| AGAGAGTTTGGAAGCTGCGG+GGG | + | chr4_3:55628817-55628836 | Msa0649040:five_prime_UTR | 55.0% | |
| CATCGTGGGAGTTGCACTGA+TGG | + | chr4_3:55629495-55629514 | Msa0649040:CDS | 55.0% | |
| CTCTCTAGGCTCGTTGGTGT+TGG | + | chr4_3:55631936-55631955 | Msa0649040:intron | 55.0% | |
| ! | TGATAACGCCCCAGCTTCAC+AGG | + | chr4_3:55631998-55632017 | Msa0649040:CDS | 55.0% |
| !! | GCGTTATGCGTTTTGGGTGG+AGG | + | chr4_3:55632936-55632955 | Msa0649040:CDS | 55.0% |
| GGCTTATTGCATAGCGGTCC+TGG | - | chr4_3:55634977-55634996 | None:intergenic | 55.0% | |
| GACAACTCCAACAAGAGGCG+CGG | - | chr4_3:55636464-55636483 | None:intergenic | 55.0% | |
| GCCTCTTGTTGGAGTTGTCC+AGG | + | chr4_3:55636465-55636484 | Msa0649040:CDS | 55.0% | |
| ! | GATGGCGGCTCTATGCATAC+AGG | + | chr4_3:55636569-55636588 | Msa0649040:intron | 55.0% |
| TTTGGAAGCTGCGGGGGTGA+AGG | + | chr4_3:55628823-55628842 | Msa0649040:five_prime_UTR | 60.0% | |
| GTGGACTTGGGGGCCATGTT+TGG | - | chr4_3:55629067-55629086 | None:intergenic | 60.0% | |
| !! | TAGGCTCGTTGGTGTTGGCG+AGG | + | chr4_3:55631941-55631960 | Msa0649040:intron | 60.0% |
| TCGTATTGGGGCCCCAAAGC+TGG | + | chr4_3:55634556-55634575 | Msa0649040:CDS | 60.0% | |
| GGCGCTATAGCGGCCAATAG+CGG | + | chr4_3:55634932-55634951 | Msa0649040:intron | 60.0% | |
| GTTCCTTCCGCGCCTCTTGT+TGG | + | chr4_3:55636454-55636473 | Msa0649040:CDS | 60.0% | |
| ! | ACTCCAACAAGAGGCGCGGA+AGG | - | chr4_3:55636460-55636479 | None:intergenic | 60.0% |
| CTCTTCAAGCAACGGCGCAG+TGG | - | chr4_3:55636887-55636906 | None:intergenic | 60.0% | |
| GCGGCCGCAACACTGCATAG+CGG | + | chr4_3:55635029-55635048 | Msa0649040:intron | 65.0% | |
| ! | TAGCGGATAGCGGCGCGTAG+CGG | - | chr4_3:55635411-55635430 | None:intergenic | 65.0% |
| AGCGGCCAATAGCGGCCGCG+CGG | + | chr4_3:55634940-55634959 | Msa0649040:intron | 75.0% | |
| CCAATAGCGGCCGCGCGGTG+CGG | + | chr4_3:55634945-55634964 | Msa0649040:intron | 75.0% | |
| ! | CCGCACCGCGCGGCCGCTAT+TGG | - | chr4_3:55634948-55634967 | None:intergenic | 80.0% |
| ! | CTGGACCGCACCGCACCGCG+CGG | - | chr4_3:55634958-55634977 | None:intergenic | 80.0% |
| ! | AGCGGCCGCGCGGTGCGGTG+CGG | + | chr4_3:55634950-55634969 | Msa0649040:intron | 85.0% |
| ! | CGCGCGGTGCGGTGCGGTCC+AGG | + | chr4_3:55634956-55634975 | Msa0649040:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 55628070 | 55637417 | 55628070 | ID=Msa0649040;Name=Msa0649040 |
| chr4_3 | mRNA | 55628070 | 55637417 | 55628070 | ID=Msa0649040-mRNA-1;Parent=Msa0649040;Name=Msa0649040-mRNA-1;_AED=0.09;_eAED=0.09;_QI=916|0.93|0.93|1|1|1|16|478|554 |
| chr4_3 | exon | 55628070 | 55629122 | 55628070 | ID=Msa0649040-mRNA-1:exon:14251;Parent=Msa0649040-mRNA-1 |
| chr4_3 | exon | 55629416 | 55629544 | 55629416 | ID=Msa0649040-mRNA-1:exon:14252;Parent=Msa0649040-mRNA-1 |
| chr4_3 | exon | 55631092 | 55631193 | 55631092 | ID=Msa0649040-mRNA-1:exon:14253;Parent=Msa0649040-mRNA-1 |
| chr4_3 | exon | 55631710 | 55631814 | 55631710 | ID=Msa0649040-mRNA-1:exon:14254;Parent=Msa0649040-mRNA-1 |
| chr4_3 | exon | 55631944 | 55632019 | 55631944 | ID=Msa0649040-mRNA-1:exon:14255;Parent=Msa0649040-mRNA-1 |
| chr4_3 | exon | 55632471 | 55632629 | 55632471 | ID=Msa0649040-mRNA-1:exon:14256;Parent=Msa0649040-mRNA-1 |
| chr4_3 | exon | 55632916 | 55633018 | 55632916 | ID=Msa0649040-mRNA-1:exon:14257;Parent=Msa0649040-mRNA-1 |
| chr4_3 | exon | 55633100 | 55633162 | 55633100 | ID=Msa0649040-mRNA-1:exon:14258;Parent=Msa0649040-mRNA-1 |
| chr4_3 | exon | 55633917 | 55633962 | 55633917 | ID=Msa0649040-mRNA-1:exon:14259;Parent=Msa0649040-mRNA-1 |
| chr4_3 | exon | 55634229 | 55634326 | 55634229 | ID=Msa0649040-mRNA-1:exon:14260;Parent=Msa0649040-mRNA-1 |
| chr4_3 | exon | 55634521 | 55634597 | 55634521 | ID=Msa0649040-mRNA-1:exon:14261;Parent=Msa0649040-mRNA-1 |
| chr4_3 | exon | 55634759 | 55634872 | 55634759 | ID=Msa0649040-mRNA-1:exon:14262;Parent=Msa0649040-mRNA-1 |
| chr4_3 | exon | 55635662 | 55635781 | 55635662 | ID=Msa0649040-mRNA-1:exon:14263;Parent=Msa0649040-mRNA-1 |
| chr4_3 | exon | 55636358 | 55636486 | 55636358 | ID=Msa0649040-mRNA-1:exon:14264;Parent=Msa0649040-mRNA-1 |
| chr4_3 | exon | 55636591 | 55636669 | 55636591 | ID=Msa0649040-mRNA-1:exon:14265;Parent=Msa0649040-mRNA-1 |
| chr4_3 | exon | 55636812 | 55637417 | 55636812 | ID=Msa0649040-mRNA-1:exon:14266;Parent=Msa0649040-mRNA-1 |
| chr4_3 | five_prime_UTR | 55628070 | 55628985 | 55628070 | ID=Msa0649040-mRNA-1:five_prime_utr;Parent=Msa0649040-mRNA-1 |
| chr4_3 | CDS | 55628986 | 55629122 | 55628986 | ID=Msa0649040-mRNA-1:cds;Parent=Msa0649040-mRNA-1 |
| chr4_3 | CDS | 55629416 | 55629544 | 55629416 | ID=Msa0649040-mRNA-1:cds;Parent=Msa0649040-mRNA-1 |
| chr4_3 | CDS | 55631092 | 55631193 | 55631092 | ID=Msa0649040-mRNA-1:cds;Parent=Msa0649040-mRNA-1 |
| chr4_3 | CDS | 55631710 | 55631814 | 55631710 | ID=Msa0649040-mRNA-1:cds;Parent=Msa0649040-mRNA-1 |
| chr4_3 | CDS | 55631944 | 55632019 | 55631944 | ID=Msa0649040-mRNA-1:cds;Parent=Msa0649040-mRNA-1 |
| chr4_3 | CDS | 55632471 | 55632629 | 55632471 | ID=Msa0649040-mRNA-1:cds;Parent=Msa0649040-mRNA-1 |
| chr4_3 | CDS | 55632916 | 55633018 | 55632916 | ID=Msa0649040-mRNA-1:cds;Parent=Msa0649040-mRNA-1 |
| chr4_3 | CDS | 55633100 | 55633162 | 55633100 | ID=Msa0649040-mRNA-1:cds;Parent=Msa0649040-mRNA-1 |
| chr4_3 | CDS | 55633917 | 55633962 | 55633917 | ID=Msa0649040-mRNA-1:cds;Parent=Msa0649040-mRNA-1 |
| chr4_3 | CDS | 55634229 | 55634326 | 55634229 | ID=Msa0649040-mRNA-1:cds;Parent=Msa0649040-mRNA-1 |
| chr4_3 | CDS | 55634521 | 55634597 | 55634521 | ID=Msa0649040-mRNA-1:cds;Parent=Msa0649040-mRNA-1 |
| chr4_3 | CDS | 55634759 | 55634872 | 55634759 | ID=Msa0649040-mRNA-1:cds;Parent=Msa0649040-mRNA-1 |
| chr4_3 | CDS | 55635662 | 55635781 | 55635662 | ID=Msa0649040-mRNA-1:cds;Parent=Msa0649040-mRNA-1 |
| chr4_3 | CDS | 55636358 | 55636486 | 55636358 | ID=Msa0649040-mRNA-1:cds;Parent=Msa0649040-mRNA-1 |
| chr4_3 | CDS | 55636591 | 55636669 | 55636591 | ID=Msa0649040-mRNA-1:cds;Parent=Msa0649040-mRNA-1 |
| chr4_3 | CDS | 55636812 | 55636939 | 55636812 | ID=Msa0649040-mRNA-1:cds;Parent=Msa0649040-mRNA-1 |
| chr4_3 | three_prime_UTR | 55636940 | 55637417 | 55636940 | ID=Msa0649040-mRNA-1:three_prime_utr;Parent=Msa0649040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
