AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0652560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652560 MtrunA17_Chr4g0046291 98.950 476 5 0 2 477 1 476 0.0 983
Msa0652560 MtrunA17_Chr4g0040681 47.525 505 195 10 1 439 1 501 7.57e-144 421
Msa0652560 MtrunA17_Chr2g0283011 82.857 70 11 1 6 74 3 72 7.83e-32 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652560 AT1G28520.4 69.980 493 121 7 1 475 1 484 0.0 684
Msa0652560 AT1G28520.1 69.980 493 121 7 1 475 1 484 0.0 684
Msa0652560 AT1G28520.2 69.980 493 121 7 1 475 1 484 0.0 684
Msa0652560 AT1G28520.5 69.980 493 121 7 1 475 1 484 0.0 684
Msa0652560 AT1G28520.3 67.343 493 118 8 1 475 1 468 0.0 644
Msa0652560 AT2G42400.1 49.436 443 182 10 22 430 14 448 1.90e-128 380

Find 162 sgRNAs with CRISPR-Local

Find 513 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTCCTCCTTCTGCTTTCT+TGG 0.101987 4_3:-60279805 Msa0652560:CDS
GTTGCTGCTCCCTCACATTC+TGG 0.148081 4_3:+60279573 None:intergenic
AAGCAAGTTATCAACGAATT+TGG 0.192112 4_3:-60279269 Msa0652560:CDS
GAGAACACGGGCGACTATTA+TGG 0.245346 4_3:-60278888 Msa0652560:CDS
TGAATAGCTCATTCTCTTAC+TGG 0.264115 4_3:-60278698 Msa0652560:three_prime_UTR
CGTAAAGGTGCCATTCAAAA+TGG 0.269912 4_3:+60279204 None:intergenic
CTAAATGGAACATATGAATA+TGG 0.273129 4_3:-60278939 Msa0652560:CDS
CTTTAGTTCTAAACGGTATA+AGG 0.278335 4_3:+60279151 None:intergenic
CAGTCCCAAAGTGCACATTT+TGG 0.278981 4_3:+60279780 None:intergenic
CCTCCTCCTTCTGCTTTCTT+GGG 0.294484 4_3:-60279804 Msa0652560:CDS
TTCTTGAGGGCGAGACTATT+AGG 0.300754 4_3:-60279394 Msa0652560:CDS
TCAGGCTTAGGTGCAGTTAA+TGG 0.307307 4_3:+60283591 None:intergenic
TGATCTGCAGCTGATGTTCC+TGG 0.313776 4_3:-60284017 Msa0652560:CDS
TGCGTTGGTGATGTGAATTT+TGG 0.318949 4_3:+60284698 None:intergenic
GCCAACTTTGGCATTGATCT+TGG 0.322951 4_3:+60279001 None:intergenic
TTACTAGGGGAAGGGATAAA+AGG 0.326014 4_3:+60278763 None:intergenic
ATCATTTGTTATTCTTGCCT+TGG 0.335227 4_3:+60279106 None:intergenic
ATTGATCTTGGCTCTGCCTT+TGG 0.340387 4_3:+60279013 None:intergenic
TCTGAAGAGATCCTATTATA+TGG 0.344078 4_3:-60279243 Msa0652560:CDS
CACTGGAAGCTGCTGGATGC+TGG 0.345400 4_3:-60278668 Msa0652560:three_prime_UTR
AATTTATATGCTGGTTTCAA+TGG 0.345408 4_3:-60279888 Msa0652560:CDS
TTCAAAATTATGCTAATGTA+AGG 0.349293 4_3:-60278506 Msa0652560:three_prime_UTR
TATTCATATGTTCCATTTAG+TGG 0.352586 4_3:+60278942 None:intergenic
TCTTGAGGGCGAGACTATTA+GGG 0.353978 4_3:-60279393 Msa0652560:CDS
CCACTTTCAAATGCTCTTCG+AGG 0.358784 4_3:+60279350 None:intergenic
TCCAACCCTTGTGCGGGTCT+TGG 0.359244 4_3:+60279756 None:intergenic
GGGCCCAAAATGTGCACTTT+GGG 0.366259 4_3:-60279784 Msa0652560:CDS
ATCTTGGCTCTGCCTTTGGC+AGG 0.367430 4_3:+60279017 None:intergenic
CCAATACTATGTACCTTTGA+AGG 0.369943 4_3:+60278444 None:intergenic
TTTGATCTTTCTGTTCTTGA+GGG 0.378195 4_3:-60279407 Msa0652560:CDS
TTAGAACTAAAGCTTGTTGA+TGG 0.379159 4_3:-60279140 Msa0652560:CDS
TGAATTCAGGGTGGAAGTCT+TGG 0.379269 4_3:-60283678 Msa0652560:intron
CGTAGAACTGGGGCCATGCC+TGG 0.380276 4_3:+60279675 None:intergenic
CTCTTACTGGAGTGCGGCAC+TGG 0.383217 4_3:-60278685 Msa0652560:three_prime_UTR
AGGCTGTGGATCCATATAAT+AGG 0.383713 4_3:+60279232 None:intergenic
GTCTCATTTGCACTATTTCA+TGG 0.385507 4_3:-60278484 Msa0652560:three_prime_UTR
ATTGAGAAGGTGGCATATAA+AGG 0.385692 4_3:+60284769 None:intergenic
TTGCTGCTCCCTCACATTCT+GGG 0.388280 4_3:+60279574 None:intergenic
GCCTGCAGAGCCTGGTCGTT+AGG 0.397299 4_3:+60283567 None:intergenic
AACGACCAGGCTCTGCAGGC+TGG 0.398000 4_3:-60283564 Msa0652560:CDS
ACGACCAGGCTCTGCAGGCT+GGG 0.402119 4_3:-60283563 Msa0652560:CDS
CTGCAAAAGCCGACAGATAT+CGG 0.402396 4_3:+60283644 None:intergenic
GGCCTTGGATTCTTGTTACT+AGG 0.415115 4_3:+60278748 None:intergenic
AGAATTGCCCTGCTCTGTTT+AGG 0.425288 4_3:-60278561 Msa0652560:three_prime_UTR
TTTGATCATAATTTATATGC+TGG 0.428255 4_3:-60279897 Msa0652560:CDS
CAACCACGTCCACTGTAATC+TGG 0.432462 4_3:+60279305 None:intergenic
TCACCAGTTTGATTTGCAAC+AGG 0.437142 4_3:-60279922 Msa0652560:CDS
TGGCCCCAGTTCTACGACCC+GGG 0.437730 4_3:-60279668 Msa0652560:CDS
CAACAAGCTTTAGTTCTAAA+CGG 0.440064 4_3:+60279144 None:intergenic
AGAACACGGGCGACTATTAT+GGG 0.444586 4_3:-60278887 Msa0652560:CDS
GACAGCACCCATGCCAACTT+TGG 0.445539 4_3:+60278989 None:intergenic
ATTCATATGTTCCATTTAGT+GGG 0.448423 4_3:+60278943 None:intergenic
TGGTCGTTAGGTTCAGGCTT+AGG 0.450727 4_3:+60283579 None:intergenic
CTTTGATCTTTCTGTTCTTG+AGG 0.455790 4_3:-60279408 Msa0652560:CDS
AGCAAGGAGGCCAAAACAAA+AGG 0.459805 4_3:+60278794 None:intergenic
CCCAAGAAAGCAGAAGGAGG+AGG 0.461567 4_3:+60279804 None:intergenic
TGGGCCCAAAATGTGCACTT+TGG 0.466392 4_3:-60279785 Msa0652560:CDS
AGTCCTGTTGCAAATCAAAC+TGG 0.466924 4_3:+60279919 None:intergenic
ACCTAACGACCAGGCTCTGC+AGG 0.467191 4_3:-60283568 Msa0652560:CDS
GCCTTGGATTCTTGTTACTA+GGG 0.468364 4_3:+60278749 None:intergenic
TCCTCGCAAACTGCAAATCC+AGG 0.470484 4_3:+60283999 None:intergenic
TTCGAGTTTGATGATGAAGA+AGG 0.472308 4_3:-60284107 Msa0652560:exon
GGATTTGCAGTTTGCGAGGA+AGG 0.474779 4_3:-60283996 Msa0652560:CDS
CGACCAGGCTCTGCAGGCTG+GGG 0.475560 4_3:-60283562 Msa0652560:CDS
GAATTCAGGGTGGAAGTCTT+GGG 0.477842 4_3:-60283677 Msa0652560:intron
AGTGCGGCACTGGAAGCTGC+TGG 0.480412 4_3:-60278675 Msa0652560:three_prime_UTR
GACCCGCACAAGGGTTGGAC+TGG 0.484548 4_3:-60279752 Msa0652560:CDS
ATCCTTTAAACCAATGCCCC+CGG 0.485600 4_3:+60279650 None:intergenic
GAAGGAGGAGGGCATATACT+TGG 0.487811 4_3:+60279816 None:intergenic
TAAATGGAACATATGAATAT+GGG 0.492155 4_3:-60278938 Msa0652560:CDS
TCAAAATGTGGCAGCCAACC+AGG 0.492352 4_3:-60279964 Msa0652560:CDS
GGATTCTTGTTACTAGGGGA+AGG 0.492494 4_3:+60278754 None:intergenic
TCCAAGACCCGCACAAGGGT+TGG 0.493065 4_3:-60279757 Msa0652560:CDS
GCCGCTCTAGCTTTGAATGA+AGG 0.497242 4_3:-60279702 Msa0652560:CDS
CCTTCAAAGGTACATAGTAT+TGG 0.501571 4_3:-60278444 Msa0652560:three_prime_UTR
GCCAAGATCAATGCCAAAGT+TGG 0.501693 4_3:-60279002 Msa0652560:CDS
CAATAGAGCCTAAACAGAGC+AGG 0.507900 4_3:+60278553 None:intergenic
TGCTAATCTCATATTCGTAA+AGG 0.512641 4_3:+60279189 None:intergenic
GGTAGATAGCTAGATATAAG+AGG 0.516496 4_3:+60279837 None:intergenic
TCAAAATGGTTCAGAGGCTG+TGG 0.519821 4_3:+60279218 None:intergenic
AGAGCCTGGTCGTTAGGTTC+AGG 0.520922 4_3:+60283573 None:intergenic
GAATGAAGGGCCACCAGGCA+TGG 0.521673 4_3:-60279688 Msa0652560:CDS
TTCTCCACAAGATAGTCATA+TGG 0.522377 4_3:+60278906 None:intergenic
CAAGTTATCAACGAATTTGG+AGG 0.523716 4_3:-60279266 Msa0652560:CDS
GCTTTGAATGAAGGGCCACC+AGG 0.524274 4_3:-60279693 Msa0652560:CDS
CTATTTCATGGTAGAGTCGC+AGG 0.526136 4_3:-60278472 Msa0652560:three_prime_UTR
AGTTTCCACCTGATAACAAA+AGG 0.534609 4_3:-60279040 Msa0652560:CDS
GAATTACCAGGTGCATTCCA+TGG 0.536252 4_3:+60279540 None:intergenic
GATTCTTGTTACTAGGGGAA+GGG 0.537320 4_3:+60278755 None:intergenic
AAATTACAACAAAATGAGAC+TGG 0.539754 4_3:+60278404 None:intergenic
ATTCTAAAGCAGCTCCATCC+TGG 0.540756 4_3:+60279946 None:intergenic
CAGCAACTGCAAAGTCTCCA+TGG 0.541576 4_3:-60279557 Msa0652560:CDS
TTATGGGACATGAGCTACAT+TGG 0.541623 4_3:-60278871 Msa0652560:exon
GGGAGAAGGCTCGTTGAGCT+CGG 0.543281 4_3:+60283907 None:intergenic
GGCCCCAGTTCTACGACCCG+GGG 0.544452 4_3:-60279667 Msa0652560:CDS
GATCAATGCCAAAGTTGGCA+TGG 0.545115 4_3:-60278997 Msa0652560:CDS
CCGCTCTAGCTTTGAATGAA+GGG 0.545380 4_3:-60279701 Msa0652560:CDS
TGATATGAGCTACCTACTGT+TGG 0.548455 4_3:-60278346 Msa0652560:three_prime_UTR
CACCAGTCCAACCCTTGTGC+GGG 0.549255 4_3:+60279750 None:intergenic
ACACCAGTCCAACCCTTGTG+CGG 0.549317 4_3:+60279749 None:intergenic
CCTCGAAGAGCATTTGAAAG+TGG 0.553107 4_3:-60279350 Msa0652560:CDS
TCGAGTTTGATGATGAAGAA+GGG 0.554322 4_3:-60284106 Msa0652560:exon
ACAGCAACATGATTTCCCAT+TGG 0.555494 4_3:-60280018 Msa0652560:CDS
GTTTGCGCTCATCAACCAAT+GGG 0.555849 4_3:+60280003 None:intergenic
ATGGCCCCAGTTCTACGACC+CGG 0.558759 4_3:-60279669 Msa0652560:CDS
GAGCGCAAACACTCAACCTC+AGG 0.559169 4_3:-60279990 Msa0652560:CDS
TAGAACTAAAGCTTGTTGAT+GGG 0.559679 4_3:-60279139 Msa0652560:CDS
ATCAATGCCAAAGTTGGCAT+GGG 0.569128 4_3:-60278996 Msa0652560:CDS
TTCATATGTTCCATTTAGTG+GGG 0.571518 4_3:+60278944 None:intergenic
ACTTGCTGCAATGAAGAAGC+GGG 0.572984 4_3:+60283887 None:intergenic
TGCAATGAAGAAGCGGGAGA+AGG 0.575278 4_3:+60283893 None:intergenic
TGACTATCTTGTGGAGAACA+CGG 0.579872 4_3:-60278901 Msa0652560:CDS
TACTTGCTGCAATGAAGAAG+CGG 0.580011 4_3:+60283886 None:intergenic
GCTCTTAGTGCAAAGGCACA+AGG 0.580099 4_3:-60279612 Msa0652560:CDS
TGTTTGCGCTCATCAACCAA+TGG 0.580494 4_3:+60280002 None:intergenic
AAGGCACAAGGAAAAGATGT+TGG 0.580647 4_3:-60279600 Msa0652560:CDS
TTCATCAAATGCTTCGTGAG+TGG 0.582116 4_3:-60283934 Msa0652560:CDS
TTTGGGCCCAAGAAAGCAGA+AGG 0.584965 4_3:+60279798 None:intergenic
AGGGCGAGACTATTAGGGAA+TGG 0.585029 4_3:-60279388 Msa0652560:CDS
CCAAGAAAGCAGAAGGAGGA+GGG 0.588070 4_3:+60279805 None:intergenic
CAATGGTACAAGTTATTGTG+AGG 0.589421 4_3:-60279871 Msa0652560:CDS
CCTTGGATTCTTGTTACTAG+GGG 0.591387 4_3:+60278750 None:intergenic
GACTATCTTGTGGAGAACAC+GGG 0.594122 4_3:-60278900 Msa0652560:CDS
TTGCCAGATTACAGTGGACG+TGG 0.598415 4_3:-60279308 Msa0652560:CDS
TGCCATTCAAAATGGTTCAG+AGG 0.599568 4_3:+60279212 None:intergenic
GTCGCAGGACAAACCTTCAA+AGG 0.599665 4_3:-60278457 Msa0652560:three_prime_UTR
AGCGATTATCACAGAATCTG+AGG 0.600961 4_3:-60284661 Msa0652560:intron
ATGGGAAATCATGTTGCTGT+TGG 0.604103 4_3:+60280021 None:intergenic
TAAAGCAGCTCCATCCTGGT+TGG 0.604183 4_3:+60279950 None:intergenic
TCCTGGATTTGCAGTTTGCG+AGG 0.604508 4_3:-60284000 Msa0652560:CDS
CCCCTAGTAACAAGAATCCA+AGG 0.605884 4_3:-60278750 Msa0652560:three_prime_UTR
AAGTCTCCATGGAATGCACC+TGG 0.606170 4_3:-60279546 Msa0652560:intron
GCACAGCAGCATCAACAGTA+CGG 0.606444 4_3:+60283969 None:intergenic
TGTTGATGCTGCTGTGCTCG+AGG 0.606882 4_3:-60283963 Msa0652560:CDS
TGTTGGCATCCCAGAATGTG+AGG 0.607178 4_3:-60279583 Msa0652560:CDS
TCATATGTTCCATTTAGTGG+GGG 0.609101 4_3:+60278945 None:intergenic
AATGTGGCAGCCAACCAGGA+TGG 0.609826 4_3:-60279960 Msa0652560:CDS
AATAGAGCCTAAACAGAGCA+GGG 0.610657 4_3:+60278554 None:intergenic
CAGATTACAGTGGACGTGGT+TGG 0.611374 4_3:-60279304 Msa0652560:CDS
CAGTGAAATCATCCAACAGT+AGG 0.612787 4_3:+60278334 None:intergenic
CTCATTCTCTTACTGGAGTG+CGG 0.615702 4_3:-60278691 Msa0652560:three_prime_UTR
GACTGTCCAAGACCCGCACA+AGG 0.617960 4_3:-60279762 Msa0652560:CDS
CATACTCCACCGATATCTGT+CGG 0.625485 4_3:-60283653 Msa0652560:CDS
TGCACCATATGACTATCTTG+TGG 0.628768 4_3:-60278910 Msa0652560:CDS
AGAACTGGGGCCATGCCTGG+TGG 0.629740 4_3:+60279678 None:intergenic
TGCTGATCTACAGAAGCAGA+TGG 0.633546 4_3:-60279078 Msa0652560:CDS
TGGTACAAGTTATTGTGAGG+AGG 0.634405 4_3:-60279868 Msa0652560:CDS
GGGCCCAAGAAAGCAGAAGG+AGG 0.637584 4_3:+60279801 None:intergenic
CTATTCACAATATCTAGACA+AGG 0.640060 4_3:+60278714 None:intergenic
GATAACAAAAGGCCTGCCAA+AGG 0.643078 4_3:-60279029 Msa0652560:CDS
TAAGCCTGAACCTAACGACC+AGG 0.645449 4_3:-60283577 Msa0652560:CDS
GACCAGGCTCTGCAGGCTGG+GGG 0.657815 4_3:-60283561 Msa0652560:CDS
CCCTTCATTCAAAGCTAGAG+CGG 0.661772 4_3:+60279701 None:intergenic
GTTGGCATCCCAGAATGTGA+GGG 0.666558 4_3:-60279582 Msa0652560:CDS
AGGTCATTGCCAGATTACAG+TGG 0.682159 4_3:-60279314 Msa0652560:CDS
CAAAAGCCGACAGATATCGG+TGG 0.685536 4_3:+60283647 None:intergenic
TGATGGGAAGAAGAACTCCA+AGG 0.686149 4_3:-60279123 Msa0652560:CDS
AACCTCAGGAGTTCAAAATG+TGG 0.696064 4_3:-60279976 Msa0652560:CDS
GCCCCAGTTCTACGACCCGG+GGG 0.700926 4_3:-60279666 Msa0652560:CDS
ACTGTCCAAGACCCGCACAA+GGG 0.731238 4_3:-60279761 Msa0652560:CDS
AAAGTGGAAACAGAAAGCAG+AGG 0.746526 4_3:-60279334 Msa0652560:CDS
TCAGCTGCAGATCATCAACA+CGG 0.775219 4_3:+60284026 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAATAAATGAAAAAG+TGG + chr4_3:60279975-60279994 None:intergenic 10.0%
!! TATAAATAATAGATAATAGA+TGG + chr4_3:60280773-60280792 None:intergenic 10.0%
!!! TTTTACTTGATTTTCATTTT+TGG - chr4_3:60278694-60278713 Msa0652560:three_prime_UTR 15.0%
!!! TTTACTTGATTTTCATTTTT+GGG - chr4_3:60278695-60278714 Msa0652560:three_prime_UTR 15.0%
!!! ATTAATATGCTTTTCTTTAT+TGG - chr4_3:60278787-60278806 Msa0652560:three_prime_UTR 15.0%
!!! CATGTTTTTCTATTTTTATT+AGG - chr4_3:60279690-60279709 Msa0652560:CDS 15.0%
!!! TTAATCAGTGTTATTAATAA+CGG + chr4_3:60280514-60280533 None:intergenic 15.0%
!!! TTCTTTTTTATACTCATATA+CGG + chr4_3:60281347-60281366 None:intergenic 15.0%
!! ATGAGTATAAAAAAGAATTA+CGG - chr4_3:60281350-60281369 Msa0652560:intron 15.0%
!! ACAACTATAAAATTTATAGA+TGG + chr4_3:60281501-60281520 None:intergenic 15.0%
!! TTTCATTAACTTTGTAAATT+GGG - chr4_3:60282691-60282710 Msa0652560:intron 15.0%
!!! TTACTTGATTTTCATTTTTG+GGG - chr4_3:60278696-60278715 Msa0652560:three_prime_UTR 20.0%
!!! AATTTAACTTAATTCTCAAG+TGG - chr4_3:60278851-60278870 Msa0652560:three_prime_UTR 20.0%
!!! ATTTAACTTAATTCTCAAGT+GGG - chr4_3:60278852-60278871 Msa0652560:three_prime_UTR 20.0%
!! TAATATCATGTAATGTAAAC+TGG - chr4_3:60280531-60280550 Msa0652560:intron 20.0%
!! AACATTGTAGTTGAATAATA+TGG - chr4_3:60281070-60281089 Msa0652560:intron 20.0%
!!! TCTTTTTTATACTCATATAC+GGG + chr4_3:60281346-60281365 None:intergenic 20.0%
!! ATAAAAAAGAATTACGGATA+AGG - chr4_3:60281356-60281375 Msa0652560:intron 20.0%
!! ATAAATAAATAATACAGGCT+TGG - chr4_3:60282637-60282656 Msa0652560:intron 20.0%
!! GTTTCATTAACTTTGTAAAT+TGG - chr4_3:60282690-60282709 Msa0652560:intron 20.0%
!! TAAATATGTCGATCTTTAAA+AGG + chr4_3:60282989-60283008 None:intergenic 20.0%
!! TTTGATCATAATTTATATGC+TGG - chr4_3:60283246-60283265 Msa0652560:intron 20.0%
!!! CAATCTTTTAGAATCTTTTA+TGG - chr4_3:60283625-60283644 Msa0652560:CDS 20.0%
!! TAAATGGAACATATGAATAT+GGG - chr4_3:60284205-60284224 Msa0652560:intron 20.0%
!! TTCAAAATTATGCTAATGTA+AGG - chr4_3:60284637-60284656 Msa0652560:intron 20.0%
!!! TGTAATTTTTGTATGATTGA+AGG - chr4_3:60284754-60284773 Msa0652560:five_prime_UTR 20.0%
!!! GTAATTTTTGTATGATTGAA+GGG - chr4_3:60284755-60284774 Msa0652560:five_prime_UTR 20.0%
!! AAAGGTATGATTGTTGATTA+GGG + chr4_3:60278532-60278551 None:intergenic 25.0%
!!! TATTCATCCAATTTTGTTTC+TGG - chr4_3:60278599-60278618 Msa0652560:three_prime_UTR 25.0%
!!! ATTCATCCAATTTTGTTTCT+GGG - chr4_3:60278600-60278619 Msa0652560:three_prime_UTR 25.0%
! TTTCTGCTAGTATATTTACT+TGG - chr4_3:60278630-60278649 Msa0652560:three_prime_UTR 25.0%
! TTCTGCTAGTATATTTACTT+GGG - chr4_3:60278631-60278650 Msa0652560:three_prime_UTR 25.0%
!!! ATTTTCATTTTTGGGGTTTT+GGG - chr4_3:60278703-60278722 Msa0652560:three_prime_UTR 25.0%
! GTCAAAACAATCAAATAATC+TGG + chr4_3:60278729-60278748 None:intergenic 25.0%
!!! ATTGTTTTGACCTATGTTTA+GGG - chr4_3:60278738-60278757 Msa0652560:three_prime_UTR 25.0%
! GAAAAATAAACCCTAAACAT+AGG + chr4_3:60278751-60278770 None:intergenic 25.0%
! ATTGGTTAATTAATTGCGAT+TGG - chr4_3:60278805-60278824 Msa0652560:three_prime_UTR 25.0%
! TTGGTTAATTAATTGCGATT+GGG - chr4_3:60278806-60278825 Msa0652560:three_prime_UTR 25.0%
!! TTTAACTTAATTCTCAAGTG+GGG - chr4_3:60278853-60278872 Msa0652560:three_prime_UTR 25.0%
!!! TTTGTGAGTTTAGGTTTTAT+CGG - chr4_3:60279007-60279026 Msa0652560:CDS 25.0%
! ATCACAATTCATAAAATTGC+TGG + chr4_3:60279375-60279394 None:intergenic 25.0%
!! AGCAATTTTATGAATTGTGA+TGG - chr4_3:60279374-60279393 Msa0652560:CDS 25.0%
! ATTGAGTGACAATATATTAG+TGG - chr4_3:60279408-60279427 Msa0652560:CDS 25.0%
!! CATATCCTTCAACTTTTAAA+TGG + chr4_3:60280110-60280129 None:intergenic 25.0%
! ATGAGGATAATGATTATGTT+AGG - chr4_3:60280145-60280164 Msa0652560:intron 25.0%
! TGAGGATAATGATTATGTTA+GGG - chr4_3:60280146-60280165 Msa0652560:intron 25.0%
! AGTTCAAAACAACTAATAAC+CGG + chr4_3:60280221-60280240 None:intergenic 25.0%
!!! TATTTCTCATAGTGGATTTT+CGG - chr4_3:60280467-60280486 Msa0652560:intron 25.0%
!! ATAATATCATCCTTTTCTAG+AGG + chr4_3:60280589-60280608 None:intergenic 25.0%
! TTATATTGAAGCCAGAAAAA+TGG - chr4_3:60280788-60280807 Msa0652560:intron 25.0%
!!! ATTTGAACATACCATTTTTC+TGG + chr4_3:60280802-60280821 None:intergenic 25.0%
!! TTTGATTTCTTTATGTGAGT+TGG - chr4_3:60280929-60280948 Msa0652560:intron 25.0%
! TTGTAGTTGAATAATATGGA+TGG - chr4_3:60281074-60281093 Msa0652560:intron 25.0%
! ACTCATTTATTAAACGAGTT+AGG + chr4_3:60281238-60281257 None:intergenic 25.0%
! GCCTATTAATTTAATTAAGC+CGG - chr4_3:60281279-60281298 Msa0652560:intron 25.0%
! TCCGGCTTAATTAAATTAAT+AGG + chr4_3:60281283-60281302 None:intergenic 25.0%
!!! TTGATTTGTGTGAATTGTTA+AGG - chr4_3:60281383-60281402 Msa0652560:intron 25.0%
! TGAAATTTGTAACACAAACT+AGG - chr4_3:60281619-60281638 Msa0652560:intron 25.0%
! CTTAAAATAAAGCCTTTGAT+AGG - chr4_3:60281689-60281708 Msa0652560:intron 25.0%
! AATCTCAATTTATCTCAAGA+GGG - chr4_3:60281790-60281809 Msa0652560:intron 25.0%
! ATCAATTAGGTTTCTTGATA+GGG + chr4_3:60282229-60282248 None:intergenic 25.0%
! TATCAATTAGGTTTCTTGAT+AGG + chr4_3:60282230-60282249 None:intergenic 25.0%
! TATTTCCTAGCATATCAATT+AGG + chr4_3:60282242-60282261 None:intergenic 25.0%
! AATTGATATGCTAGGAAATA+AGG - chr4_3:60282242-60282261 Msa0652560:intron 25.0%
!! AACAAAAAGCAATCAAGTTT+TGG + chr4_3:60282541-60282560 None:intergenic 25.0%
! TCTATAAACTGCCATAAATA+AGG + chr4_3:60282595-60282614 None:intergenic 25.0%
! ATTGCTTTATAGTGTTTCAT+AGG - chr4_3:60282668-60282687 Msa0652560:intron 25.0%
!! TCTTCTTTTGAATCAGTTAA+AGG + chr4_3:60282914-60282933 None:intergenic 25.0%
! CAGCATTAAAATATGGATAA+AGG + chr4_3:60283035-60283054 None:intergenic 25.0%
!!! AATTTATATGCTGGTTTCAA+TGG - chr4_3:60283255-60283274 Msa0652560:intron 25.0%
!! TTCTAAAAGATTGAATTACC+AGG + chr4_3:60283618-60283637 None:intergenic 25.0%
! ATTCATATGTTCCATTTAGT+GGG + chr4_3:60284203-60284222 None:intergenic 25.0%
! TATTCATATGTTCCATTTAG+TGG + chr4_3:60284204-60284223 None:intergenic 25.0%
! CTAAATGGAACATATGAATA+TGG - chr4_3:60284204-60284223 Msa0652560:intron 25.0%
! AAATTACAACAAAATGAGAC+TGG + chr4_3:60284742-60284761 None:intergenic 25.0%
! GAAAGGTATGATTGTTGATT+AGG + chr4_3:60278533-60278552 None:intergenic 30.0%
GAACAAAATGAACAGTGAAA+AGG + chr4_3:60278572-60278591 None:intergenic 30.0%
!!! GATTTTCATTTTTGGGGTTT+TGG - chr4_3:60278702-60278721 Msa0652560:three_prime_UTR 30.0%
!!! GATTGTTTTGACCTATGTTT+AGG - chr4_3:60278737-60278756 Msa0652560:three_prime_UTR 30.0%
TGGTTAATTAATTGCGATTG+GGG - chr4_3:60278807-60278826 Msa0652560:three_prime_UTR 30.0%
AAATTATTCACAACGCCAAA+AGG + chr4_3:60278900-60278919 None:intergenic 30.0%
CATGTCATATTTGTGAGTTT+AGG - chr4_3:60278998-60279017 Msa0652560:CDS 30.0%
! TTTGTTTGAGATAACTGTCA+TGG - chr4_3:60279335-60279354 Msa0652560:CDS 30.0%
! TTGTTTGAGATAACTGTCAT+GGG - chr4_3:60279336-60279355 Msa0652560:CDS 30.0%
!!! AAAGCTCTTATTTTGAACTG+TGG - chr4_3:60279432-60279451 Msa0652560:intron 30.0%
! TGAGTTTCTTATTCCCTTTT+GGG - chr4_3:60279625-60279644 Msa0652560:CDS 30.0%
ATCCGTTATTGCTTAAATAG+CGG - chr4_3:60279915-60279934 Msa0652560:CDS 30.0%
TTCCGCTATTTAAGCAATAA+CGG + chr4_3:60279920-60279939 None:intergenic 30.0%
AGCGGAATAAAATAGTGTTT+CGG - chr4_3:60279933-60279952 Msa0652560:CDS 30.0%
TATGAGATGAAGAGATAAGA+TGG + chr4_3:60280054-60280073 None:intergenic 30.0%
GGATTCCATTTAAAAGTTGA+AGG - chr4_3:60280102-60280121 Msa0652560:intron 30.0%
TAATGATTATGTTAGGGAAG+AGG - chr4_3:60280152-60280171 Msa0652560:intron 30.0%
TTATCACTAGTTAGAACTAC+CGG - chr4_3:60280199-60280218 Msa0652560:intron 30.0%
TCATGTAATGTAAACTGGAA+AGG - chr4_3:60280536-60280555 Msa0652560:intron 30.0%
TGGCATTCAAATTTCAAGAA+CGG + chr4_3:60280753-60280772 None:intergenic 30.0%
AAAACTCAATGTGCATACAT+TGG - chr4_3:60280833-60280852 Msa0652560:intron 30.0%
! ATTTCTTTATGTGAGTTGGA+GGG - chr4_3:60280933-60280952 Msa0652560:intron 30.0%
GTCGAATTAACAGTACTTTA+TGG - chr4_3:60281002-60281021 Msa0652560:intron 30.0%
AATTTAATTAAGCCGGACTT+AGG - chr4_3:60281286-60281305 Msa0652560:intron 30.0%
!!! CTTTTTTATAAGCCTAAGTC+CGG + chr4_3:60281301-60281320 None:intergenic 30.0%
AATCATGTCTGATAACATCA+AGG + chr4_3:60281462-60281481 None:intergenic 30.0%
TAAAGCCTTTGATAGGTAAA+AGG - chr4_3:60281696-60281715 Msa0652560:intron 30.0%
CTTGAGATAAATTGAGATTC+AGG + chr4_3:60281789-60281808 None:intergenic 30.0%
GAATCTCAATTTATCTCAAG+AGG - chr4_3:60281789-60281808 Msa0652560:intron 30.0%
TGAAATGTAACTTGGATTTG+TGG - chr4_3:60282092-60282111 Msa0652560:intron 30.0%
! TATCTCTTCTACTCTGTTTT+TGG + chr4_3:60282130-60282149 None:intergenic 30.0%
AGAGATAGTTGAAAAAGATG+TGG - chr4_3:60282143-60282162 Msa0652560:intron 30.0%
GAGATAGTTGAAAAAGATGT+GGG - chr4_3:60282144-60282163 Msa0652560:intron 30.0%
AGAAACCTAATTGATATGCT+AGG - chr4_3:60282234-60282253 Msa0652560:intron 30.0%
TTAACCACATACAAAGAGTT+GGG + chr4_3:60282431-60282450 None:intergenic 30.0%
TTTACCGTGTGAATAAATCT+TGG - chr4_3:60282560-60282579 Msa0652560:intron 30.0%
TTACCGTGTGAATAAATCTT+GGG - chr4_3:60282561-60282580 Msa0652560:intron 30.0%
ATAACATATCCAACAAACTG+GGG + chr4_3:60282844-60282863 None:intergenic 30.0%
CATAACATATCCAACAAACT+GGG + chr4_3:60282845-60282864 None:intergenic 30.0%
ACATAACATATCCAACAAAC+TGG + chr4_3:60282846-60282865 None:intergenic 30.0%
TTGGATATGTTATGTTGCAA+TGG - chr4_3:60282851-60282870 Msa0652560:intron 30.0%
TGGATATGTTATGTTGCAAT+GGG - chr4_3:60282852-60282871 Msa0652560:intron 30.0%
! TCTTTTGAATCAGTTAAAGG+AGG + chr4_3:60282911-60282930 None:intergenic 30.0%
!! AGGAAACTTGTTACAATTAC+AGG + chr4_3:60283082-60283101 None:intergenic 30.0%
TGTAATTGTAACAAGTTTCC+TGG - chr4_3:60283081-60283100 Msa0652560:intron 30.0%
ACAATATTGCTAAACCTTGT+AGG + chr4_3:60283682-60283701 None:intergenic 30.0%
TTTAATTATTTCCCCCTTGT+TGG - chr4_3:60283701-60283720 Msa0652560:intron 30.0%
TTTGATCTTTCTGTTCTTGA+GGG - chr4_3:60283736-60283755 Msa0652560:intron 30.0%
AAGCAAGTTATCAACGAATT+TGG - chr4_3:60283874-60283893 Msa0652560:intron 30.0%
TCTGAAGAGATCCTATTATA+TGG - chr4_3:60283900-60283919 Msa0652560:CDS 30.0%
TGCTAATCTCATATTCGTAA+AGG + chr4_3:60283957-60283976 None:intergenic 30.0%
!! CTTTAGTTCTAAACGGTATA+AGG + chr4_3:60283995-60284014 None:intergenic 30.0%
!! CAACAAGCTTTAGTTCTAAA+CGG + chr4_3:60284002-60284021 None:intergenic 30.0%
!! TTAGAACTAAAGCTTGTTGA+TGG - chr4_3:60284003-60284022 Msa0652560:CDS 30.0%
!! TAGAACTAAAGCTTGTTGAT+GGG - chr4_3:60284004-60284023 Msa0652560:CDS 30.0%
!! ATCATTTGTTATTCTTGCCT+TGG + chr4_3:60284040-60284059 None:intergenic 30.0%
TTCATATGTTCCATTTAGTG+GGG + chr4_3:60284202-60284221 None:intergenic 30.0%
!!! TATGCTGTTTCCTTTTGTTT+TGG - chr4_3:60284339-60284358 Msa0652560:intron 30.0%
ATAAAAGGAAAAACAGAGCA+AGG + chr4_3:60284368-60284387 None:intergenic 30.0%
CTATTCACAATATCTAGACA+AGG + chr4_3:60284432-60284451 None:intergenic 30.0%
! GACTGGACATTTTTATTACA+TGG + chr4_3:60284725-60284744 None:intergenic 30.0%
ATTGAGAAGGTGGCATATAA+AGG + chr4_3:60278377-60278396 None:intergenic 35.0%
! TATGCCACCTTCTCAATTTT+TGG - chr4_3:60278380-60278399 Msa0652560:three_prime_UTR 35.0%
TCTTCCAAAAATTGAGAAGG+TGG + chr4_3:60278387-60278406 None:intergenic 35.0%
GTCTCTTCCAAAAATTGAGA+AGG + chr4_3:60278390-60278409 None:intergenic 35.0%
TGATTAGGGTAGAAAAGAGA+AGG + chr4_3:60278518-60278537 None:intergenic 35.0%
GATGTTGTAGATCGATTGAA+AGG + chr4_3:60278550-60278569 None:intergenic 35.0%
CGAAAACCCAGAAACAAAAT+TGG + chr4_3:60278609-60278628 None:intergenic 35.0%
GCTAGTATATTTACTTGGGT+TGG - chr4_3:60278635-60278654 Msa0652560:three_prime_UTR 35.0%
!!! GATTCCTTGTTTTAGCCTTT+TGG - chr4_3:60278882-60278901 Msa0652560:CDS 35.0%
!! TTCGAGTTTGATGATGAAGA+AGG - chr4_3:60279036-60279055 Msa0652560:CDS 35.0%
!! TCGAGTTTGATGATGAAGAA+GGG - chr4_3:60279037-60279056 Msa0652560:CDS 35.0%
! TGCATCACATAGTCTTTTCA+AGG - chr4_3:60279081-60279100 Msa0652560:CDS 35.0%
!! ACATAGTCTTTTCAAGGACA+AGG - chr4_3:60279087-60279106 Msa0652560:CDS 35.0%
! TTTTGAACTGTGGTGTTTGT+TGG - chr4_3:60279442-60279461 Msa0652560:intron 35.0%
!!! GGGTAACATCATTTTTCAAG+AGG - chr4_3:60279602-60279621 Msa0652560:CDS 35.0%
! GTGAGTTTCTTATTCCCTTT+TGG - chr4_3:60279624-60279643 Msa0652560:CDS 35.0%
! GAGTTTCTTATTCCCTTTTG+GGG - chr4_3:60279626-60279645 Msa0652560:CDS 35.0%
TAGATTATCCATCCCCAAAA+GGG + chr4_3:60279641-60279660 None:intergenic 35.0%
ATAGATTATCCATCCCCAAA+AGG + chr4_3:60279642-60279661 None:intergenic 35.0%
TCTTGTAGATGCTTCAGAAA+TGG - chr4_3:60279745-60279764 Msa0652560:CDS 35.0%
CAAATCTCGAAACGTAATAG+CGG + chr4_3:60279813-60279832 None:intergenic 35.0%
GGATATCACCAATATGCAAA+AGG + chr4_3:60279899-60279918 None:intergenic 35.0%
ATAAGATGGAGATACAGATG+TGG + chr4_3:60280040-60280059 None:intergenic 35.0%
! ATCCTCATTTTCAGATAGTG+AGG + chr4_3:60280133-60280152 None:intergenic 35.0%
!! CTATCTGCTATTTCTCATAG+TGG - chr4_3:60280459-60280478 Msa0652560:intron 35.0%
! TGTTTTCACCAGTCATTAAG+TGG - chr4_3:60280625-60280644 Msa0652560:intron 35.0%
! GTTTTCACCAGTCATTAAGT+GGG - chr4_3:60280626-60280645 Msa0652560:intron 35.0%
! TTTTCACCAGTCATTAAGTG+GGG - chr4_3:60280627-60280646 Msa0652560:intron 35.0%
! GATTTCTTTATGTGAGTTGG+AGG - chr4_3:60280932-60280951 Msa0652560:intron 35.0%
GTACTGTTAATTCGACAACA+AGG + chr4_3:60280998-60281017 None:intergenic 35.0%
GATTCAATGCAAGTCTTCAA+TGG - chr4_3:60281112-60281131 Msa0652560:intron 35.0%
ATGTTGAATCACTTTGTTCC+TGG - chr4_3:60281141-60281160 Msa0652560:intron 35.0%
! TTTTATACTCATATACGGGC+CGG + chr4_3:60281342-60281361 None:intergenic 35.0%
CTATAACCATACTTGACCTT+AGG + chr4_3:60281424-60281443 None:intergenic 35.0%
CTAAGGTCAAGTATGGTTAT+AGG - chr4_3:60281422-60281441 Msa0652560:intron 35.0%
AGTACGTTGCACAAATTGAA+AGG - chr4_3:60281568-60281587 Msa0652560:intron 35.0%
!!! GGCCTTAGTTTTTTTCAACT+AGG - chr4_3:60281729-60281748 Msa0652560:intron 35.0%
GGCCTAGTTGAAAAAAACTA+AGG + chr4_3:60281734-60281753 None:intergenic 35.0%
!!! TAGTTTTTTTCAACTAGGCC+CGG - chr4_3:60281734-60281753 Msa0652560:intron 35.0%
GAAAAATTAAGCCTGTCTTC+GGG + chr4_3:60281917-60281936 None:intergenic 35.0%
GGAAAAATTAAGCCTGTCTT+CGG + chr4_3:60281918-60281937 None:intergenic 35.0%
AAGTTAGAAAGAGAAGAGTG+TGG - chr4_3:60282178-60282197 Msa0652560:intron 35.0%
! AAGAGTGTGGAGAAAAGATA+GGG - chr4_3:60282191-60282210 Msa0652560:intron 35.0%
!!! GAGACGCATTTTCTGAAATA+TGG + chr4_3:60282358-60282377 None:intergenic 35.0%
TATTTCAGAAAATGCGTCTC+TGG - chr4_3:60282358-60282377 Msa0652560:intron 35.0%
ACAAAGAGTTGGGTTTATCA+TGG + chr4_3:60282421-60282440 None:intergenic 35.0%
TAAACCCAACTCTTTGTATG+TGG - chr4_3:60282424-60282443 Msa0652560:intron 35.0%
CTTAACCACATACAAAGAGT+TGG + chr4_3:60282432-60282451 None:intergenic 35.0%
CAACTCTTTGTATGTGGTTA+AGG - chr4_3:60282430-60282449 Msa0652560:intron 35.0%
AGTTGTTAATTCCATCTACC+TGG - chr4_3:60282461-60282480 Msa0652560:intron 35.0%
ATCACGTTAAAGTGCATACT+CGG + chr4_3:60282492-60282511 None:intergenic 35.0%
CTGCCATAAATAAGGTACAT+AGG + chr4_3:60282587-60282606 None:intergenic 35.0%
GGCAGTTTATAGACTTTGAA+AGG - chr4_3:60282602-60282621 Msa0652560:intron 35.0%
TGGAATAGTCATTAAGCATC+AGG - chr4_3:60282743-60282762 Msa0652560:intron 35.0%
! GAATCAGTTGCTTTCAAATC+AGG + chr4_3:60282769-60282788 None:intergenic 35.0%
! ACTGATTCAAAAGAAGAGAG+AGG - chr4_3:60282917-60282936 Msa0652560:intron 35.0%
GAAACATGTGTAAACTCTTG+AGG + chr4_3:60282967-60282986 None:intergenic 35.0%
!!! TCCATATTTTAATGCTGAGC+TGG - chr4_3:60283038-60283057 Msa0652560:intron 35.0%
ACCAGCTCAGCATTAAAATA+TGG + chr4_3:60283042-60283061 None:intergenic 35.0%
TTACAGGTGAGATCTAGTTA+CGG + chr4_3:60283066-60283085 None:intergenic 35.0%
TCCTGGTTTAACTGTAAAAC+AGG - chr4_3:60283098-60283117 Msa0652560:intron 35.0%
CCTGGTTTAACTGTAAAACA+GGG - chr4_3:60283099-60283118 Msa0652560:intron 35.0%
CAATGGTACAAGTTATTGTG+AGG - chr4_3:60283272-60283291 Msa0652560:intron 35.0%
GGTAGATAGCTAGATATAAG+AGG + chr4_3:60283309-60283328 None:intergenic 35.0%
! TTTTTCTGCTCTTAGTGCAA+AGG - chr4_3:60283524-60283543 Msa0652560:intron 35.0%
CTTTGATCTTTCTGTTCTTG+AGG - chr4_3:60283735-60283754 Msa0652560:intron 35.0%
CAAGTTATCAACGAATTTGG+AGG - chr4_3:60283877-60283896 Msa0652560:intron 35.0%
AGTTTCCACCTGATAACAAA+AGG - chr4_3:60284103-60284122 Msa0652560:exon 35.0%
TCATATGTTCCATTTAGTGG+GGG + chr4_3:60284201-60284220 None:intergenic 35.0%
TTCTCCACAAGATAGTCATA+TGG + chr4_3:60284240-60284259 None:intergenic 35.0%
CTAGACAAGGCAAACAAAAA+TGG + chr4_3:60284419-60284438 None:intergenic 35.0%
TGAATAGCTCATTCTCTTAC+TGG - chr4_3:60284445-60284464 Msa0652560:intron 35.0%
GTCTCATTTGCACTATTTCA+TGG - chr4_3:60284659-60284678 Msa0652560:intron 35.0%
CCAATACTATGTACCTTTGA+AGG + chr4_3:60284702-60284721 None:intergenic 35.0%
! CCTTCAAAGGTACATAGTAT+TGG - chr4_3:60284699-60284718 Msa0652560:five_prime_UTR 35.0%
!!! CGTTGGTGATGTGAATTTTG+GGG + chr4_3:60278446-60278465 None:intergenic 40.0%
!!! GCGTTGGTGATGTGAATTTT+GGG + chr4_3:60278447-60278466 None:intergenic 40.0%
!!! TGCGTTGGTGATGTGAATTT+TGG + chr4_3:60278448-60278467 None:intergenic 40.0%
! TCACATCACCAACGCATTTT+TGG - chr4_3:60278452-60278471 Msa0652560:three_prime_UTR 40.0%
! CACATCACCAACGCATTTTT+GGG - chr4_3:60278453-60278472 Msa0652560:three_prime_UTR 40.0%
! ACATCACCAACGCATTTTTG+GGG - chr4_3:60278454-60278473 Msa0652560:three_prime_UTR 40.0%
! TTTTTCCCCCAAAAATGCGT+TGG + chr4_3:60278463-60278482 None:intergenic 40.0%
AGCGATTATCACAGAATCTG+AGG - chr4_3:60278482-60278501 Msa0652560:three_prime_UTR 40.0%
TAGGGTAGAAAAGAGAAGGA+CGG + chr4_3:60278514-60278533 None:intergenic 40.0%
AACGCCAAAAGGCTAAAACA+AGG + chr4_3:60278889-60278908 None:intergenic 40.0%
GCGTTGTGAATAATTTCAGC+TGG - chr4_3:60278904-60278923 Msa0652560:CDS 40.0%
TGCTAGTTGTGTGCATTTGT+TGG - chr4_3:60278956-60278975 Msa0652560:CDS 40.0%
TTCATCAAATGCTTCGTGAG+TGG - chr4_3:60279209-60279228 Msa0652560:CDS 40.0%
! TACTTGCTGCAATGAAGAAG+CGG + chr4_3:60279260-60279279 None:intergenic 40.0%
TTCAATGCAATTGCAGCTAG+TGG - chr4_3:60279310-60279329 Msa0652560:CDS 40.0%
TCAATGCAATTGCAGCTAGT+GGG - chr4_3:60279311-60279330 Msa0652560:CDS 40.0%
! TGGTGTTTGTTGGTGAATTC+AGG - chr4_3:60279452-60279471 Msa0652560:intron 40.0%
! GGTGTTTGTTGGTGAATTCA+GGG - chr4_3:60279453-60279472 Msa0652560:intron 40.0%
!! TTCTTATTCCCTTTTGGGGA+TGG - chr4_3:60279630-60279649 Msa0652560:CDS 40.0%
GAAACGTAATAGCGGTATAG+AGG + chr4_3:60279805-60279824 None:intergenic 40.0%
! TAGCAGTGCCTTTTGCATAT+TGG - chr4_3:60279888-60279907 Msa0652560:CDS 40.0%
TTTAGTGATGAGAGGTTAGC+TGG + chr4_3:60280017-60280036 None:intergenic 40.0%
AGATGTGGTTTAGTGATGAG+AGG + chr4_3:60280025-60280044 None:intergenic 40.0%
TCCTTCAAGACATTGATCAG+AGG - chr4_3:60280081-60280100 Msa0652560:intron 40.0%
TCCTCTGATCAATGTCTTGA+AGG + chr4_3:60280085-60280104 None:intergenic 40.0%
TGCCTCACTATCTGAAAATG+AGG - chr4_3:60280128-60280147 Msa0652560:intron 40.0%
TCACTTTCGATTTCTGCTAC+TGG - chr4_3:60280262-60280281 Msa0652560:intron 40.0%
GAAATAGCAGATAGCGAAGT+GGG + chr4_3:60280453-60280472 None:intergenic 40.0%
AGAAATAGCAGATAGCGAAG+TGG + chr4_3:60280454-60280473 None:intergenic 40.0%
! CGAATCTTCTCCTCTAGAAA+AGG - chr4_3:60280576-60280595 Msa0652560:intron 40.0%
! ATGTGAGTTGGAGGGTAAAT+TGG - chr4_3:60280941-60280960 Msa0652560:intron 40.0%
! TGTGAGTTGGAGGGTAAATT+GGG - chr4_3:60280942-60280961 Msa0652560:intron 40.0%
ATCACTTTGTTCCTGGAAGT+AGG - chr4_3:60281148-60281167 Msa0652560:intron 40.0%
TCACTTTGTTCCTGGAAGTA+GGG - chr4_3:60281149-60281168 Msa0652560:intron 40.0%
AAAAGCCTATCAAGCCTATC+AGG - chr4_3:60281316-60281335 Msa0652560:intron 40.0%
GATATGCCTAAGGTCAAGTA+TGG - chr4_3:60281415-60281434 Msa0652560:intron 40.0%
! CACAAACTAGGCTTTTAGAC+AGG - chr4_3:60281631-60281650 Msa0652560:intron 40.0%
! AGGCTTTTAGACAGGCTAAT+AGG - chr4_3:60281639-60281658 Msa0652560:intron 40.0%
!! ACCTTTTTAAAAGCCTGGCT+TGG + chr4_3:60281665-60281684 None:intergenic 40.0%
!! CTTGGCCTTTTACCTATCAA+AGG + chr4_3:60281704-60281723 None:intergenic 40.0%
CTTTGATAGGTAAAAGGCCA+AGG - chr4_3:60281702-60281721 Msa0652560:intron 40.0%
AAAAACTAAGGCCTAAGCCT+TGG + chr4_3:60281722-60281741 None:intergenic 40.0%
TTGTTTCATTGCCACAACAG+TGG + chr4_3:60281832-60281851 None:intergenic 40.0%
GTTGTGGCAATGAAACAATG+TGG - chr4_3:60281834-60281853 Msa0652560:intron 40.0%
GCAATGAAACAATGTGGCTA+CGG - chr4_3:60281840-60281859 Msa0652560:intron 40.0%
! ACTCTTCGCTGATGAGATTT+TGG + chr4_3:60281876-60281895 None:intergenic 40.0%
ACGTAGCAATCTGACAATCA+GGG - chr4_3:60281973-60281992 Msa0652560:intron 40.0%
! TCTGCTGATTGGTATTGGAT+GGG - chr4_3:60282039-60282058 Msa0652560:intron 40.0%
GTAACTTGGATTTGTGGATC+TGG - chr4_3:60282098-60282117 Msa0652560:intron 40.0%
! GAAGAGTGTGGAGAAAAGAT+AGG - chr4_3:60282190-60282209 Msa0652560:intron 40.0%
TCTTGATAGGGCATGATCAT+GGG + chr4_3:60282217-60282236 None:intergenic 40.0%
TTCTTGATAGGGCATGATCA+TGG + chr4_3:60282218-60282237 None:intergenic 40.0%
AGGCCCAAGATTTATTCACA+CGG + chr4_3:60282567-60282586 None:intergenic 40.0%
! GGGCCTATGTACCTTATTTA+TGG - chr4_3:60282581-60282600 Msa0652560:intron 40.0%
GTTATGTTGCAATGGGCATT+AGG - chr4_3:60282859-60282878 Msa0652560:intron 40.0%
GTACAGTGTGCAAGAAAAGA+TGG + chr4_3:60283013-60283032 None:intergenic 40.0%
! CCCTGTTTTACAGTTAAACC+AGG + chr4_3:60283102-60283121 None:intergenic 40.0%
ATGGGAAATCATGTTGCTGT+TGG + chr4_3:60283125-60283144 None:intergenic 40.0%
ACAGCAACATGATTTCCCAT+TGG - chr4_3:60283125-60283144 Msa0652560:intron 40.0%
AACCTCAGGAGTTCAAAATG+TGG - chr4_3:60283167-60283186 Msa0652560:intron 40.0%
!! TCACCAGTTTGATTTGCAAC+AGG - chr4_3:60283221-60283240 Msa0652560:intron 40.0%
AGTCCTGTTGCAAATCAAAC+TGG + chr4_3:60283227-60283246 None:intergenic 40.0%
TGGTACAAGTTATTGTGAGG+AGG - chr4_3:60283275-60283294 Msa0652560:intron 40.0%
! AGTCCCAAAGTGCACATTTT+GGG + chr4_3:60283365-60283384 None:intergenic 40.0%
AAGGCACAAGGAAAAGATGT+TGG - chr4_3:60283543-60283562 Msa0652560:CDS 40.0%
AAAGTGGAAACAGAAAGCAG+AGG - chr4_3:60283809-60283828 Msa0652560:intron 40.0%
AGGCTGTGGATCCATATAAT+AGG + chr4_3:60283914-60283933 None:intergenic 40.0%
! AGCCTCTGAACCATTTTGAA+TGG - chr4_3:60283929-60283948 Msa0652560:CDS 40.0%
TGCCATTCAAAATGGTTCAG+AGG + chr4_3:60283934-60283953 None:intergenic 40.0%
!! CGTAAAGGTGCCATTCAAAA+TGG + chr4_3:60283942-60283961 None:intergenic 40.0%
ATCAATGCCAAAGTTGGCAT+GGG - chr4_3:60284147-60284166 Msa0652560:intron 40.0%
TGCACCATATGACTATCTTG+TGG - chr4_3:60284233-60284252 Msa0652560:intron 40.0%
TGACTATCTTGTGGAGAACA+CGG - chr4_3:60284242-60284261 Msa0652560:intron 40.0%
TTATGGGACATGAGCTACAT+TGG - chr4_3:60284272-60284291 Msa0652560:intron 40.0%
AAAGGAAAAACAGAGCAAGG+AGG + chr4_3:60284365-60284384 None:intergenic 40.0%
TTACTAGGGGAAGGGATAAA+AGG + chr4_3:60284383-60284402 None:intergenic 40.0%
GATTCTTGTTACTAGGGGAA+GGG + chr4_3:60284391-60284410 None:intergenic 40.0%
CCTTGGATTCTTGTTACTAG+GGG + chr4_3:60284396-60284415 None:intergenic 40.0%
GCCTTGGATTCTTGTTACTA+GGG + chr4_3:60284397-60284416 None:intergenic 40.0%
AAGGCAAACAAAAATGGCCT+TGG + chr4_3:60284413-60284432 None:intergenic 40.0%
AATAGAGCCTAAACAGAGCA+GGG + chr4_3:60284592-60284611 None:intergenic 40.0%
TGATATGAGCTACCTACTGT+TGG - chr4_3:60284797-60284816 Msa0652560:five_prime_UTR 40.0%
!! CATCACCAACGCATTTTTGG+GGG - chr4_3:60278455-60278474 Msa0652560:three_prime_UTR 45.0%
TCAGCTGCAGATCATCAACA+CGG + chr4_3:60279120-60279139 None:intergenic 45.0%
! ACTTGCTGCAATGAAGAAGC+GGG + chr4_3:60279259-60279278 None:intergenic 45.0%
! GTTTGTTGGTGAATTCAGGG+TGG - chr4_3:60279456-60279475 Msa0652560:intron 45.0%
TGAATTCAGGGTGGAAGTCT+TGG - chr4_3:60279465-60279484 Msa0652560:intron 45.0%
GAATTCAGGGTGGAAGTCTT+GGG - chr4_3:60279466-60279485 Msa0652560:intron 45.0%
CATACTCCACCGATATCTGT+CGG - chr4_3:60279490-60279509 Msa0652560:intron 45.0%
CTGCAAAAGCCGACAGATAT+CGG + chr4_3:60279502-60279521 None:intergenic 45.0%
TCAGGCTTAGGTGCAGTTAA+TGG + chr4_3:60279555-60279574 None:intergenic 45.0%
! TAGCGTTTCGCCTTTTGTTG+CGG + chr4_3:60279846-60279865 None:intergenic 45.0%
ATAGCGAAGTGGGCAAATAG+CGG + chr4_3:60280443-60280462 None:intergenic 45.0%
AACGGATCGTGCAAAATAGC+AGG + chr4_3:60280496-60280515 None:intergenic 45.0%
AAACGACCCCACTTAATGAC+TGG + chr4_3:60280636-60280655 None:intergenic 45.0%
AGTTGGAGGGTAAATTGGGT+GGG - chr4_3:60280946-60280965 Msa0652560:intron 45.0%
CAAGTAGCTGTCCGACATAT+TGG - chr4_3:60280969-60280988 Msa0652560:intron 45.0%
CAACAAGGCTGCCAATATGT+CGG + chr4_3:60280983-60281002 None:intergenic 45.0%
CACTTTGTTCCTGGAAGTAG+GGG - chr4_3:60281150-60281169 Msa0652560:intron 45.0%
! CTTTTAGTAGACCGAGCCAT+AGG + chr4_3:60281205-60281224 None:intergenic 45.0%
TTAAACGAGTTAGGCCAAGC+CGG + chr4_3:60281229-60281248 None:intergenic 45.0%
! GCTTGCTACTGATATGCCTA+AGG - chr4_3:60281405-60281424 Msa0652560:intron 45.0%
!! GCCAAGCCAGGCTTTTAAAA+AGG - chr4_3:60281661-60281680 Msa0652560:intron 45.0%
!! GCCAGGCTTTTAAAAAGGTC+AGG - chr4_3:60281666-60281685 Msa0652560:intron 45.0%
!! GCCTGACCTTTTTAAAAGCC+TGG + chr4_3:60281670-60281689 None:intergenic 45.0%
TAGGTAAAAGGCCAAGGCTT+AGG - chr4_3:60281708-60281727 Msa0652560:intron 45.0%
GAGCTAACTATCCACTGTTG+TGG - chr4_3:60281818-60281837 Msa0652560:intron 45.0%
TGAAACAATGTGGCTACGGT+TGG - chr4_3:60281844-60281863 Msa0652560:intron 45.0%
GAAAAAAGTAGCCCGAAGAC+AGG - chr4_3:60281903-60281922 Msa0652560:intron 45.0%
CACGTAGCAATCTGACAATC+AGG - chr4_3:60281972-60281991 Msa0652560:intron 45.0%
AATAGTCAGCCTCTGCTGAT+TGG - chr4_3:60282028-60282047 Msa0652560:intron 45.0%
CATCCAATACCAATCAGCAG+AGG + chr4_3:60282040-60282059 None:intergenic 45.0%
! CTCTGCTGATTGGTATTGGA+TGG - chr4_3:60282038-60282057 Msa0652560:intron 45.0%
AGTTACATTTCACCTCCCAC+CGG + chr4_3:60282084-60282103 None:intergenic 45.0%
GTGGGAGGTGAAATGTAACT+TGG - chr4_3:60282084-60282103 Msa0652560:intron 45.0%
CATTACCTACCCCAGTTTGT+TGG - chr4_3:60282832-60282851 Msa0652560:intron 45.0%
CATATCCAACAAACTGGGGT+AGG + chr4_3:60282840-60282859 None:intergenic 45.0%
! AAAGAAGAGAGAGGCTCTGA+TGG - chr4_3:60282926-60282945 Msa0652560:intron 45.0%
GTTTGCGCTCATCAACCAAT+GGG + chr4_3:60283143-60283162 None:intergenic 45.0%
TGTTTGCGCTCATCAACCAA+TGG + chr4_3:60283144-60283163 None:intergenic 45.0%
! TGCCACATTTTGAACTCCTG+AGG + chr4_3:60283172-60283191 None:intergenic 45.0%
!! ATTCTAAAGCAGCTCCATCC+TGG + chr4_3:60283200-60283219 None:intergenic 45.0%
! CAGTCCCAAAGTGCACATTT+TGG + chr4_3:60283366-60283385 None:intergenic 45.0%
CCCTTCATTCAAAGCTAGAG+CGG + chr4_3:60283445-60283464 None:intergenic 45.0%
!! CCGCTCTAGCTTTGAATGAA+GGG - chr4_3:60283442-60283461 Msa0652560:intron 45.0%
ATCCTTTAAACCAATGCCCC+CGG + chr4_3:60283496-60283515 None:intergenic 45.0%
GAATTACCAGGTGCATTCCA+TGG + chr4_3:60283606-60283625 None:intergenic 45.0%
TTTGTCTGCTACAGCCTACA+AGG - chr4_3:60283665-60283684 Msa0652560:CDS 45.0%
TTCTTGAGGGCGAGACTATT+AGG - chr4_3:60283749-60283768 Msa0652560:intron 45.0%
TCTTGAGGGCGAGACTATTA+GGG - chr4_3:60283750-60283769 Msa0652560:intron 45.0%
CCACTTTCAAATGCTCTTCG+AGG + chr4_3:60283796-60283815 None:intergenic 45.0%
!! CCTCGAAGAGCATTTGAAAG+TGG - chr4_3:60283793-60283812 Msa0652560:intron 45.0%
AGGTCATTGCCAGATTACAG+TGG - chr4_3:60283829-60283848 Msa0652560:intron 45.0%
TCAAAATGGTTCAGAGGCTG+TGG + chr4_3:60283928-60283947 None:intergenic 45.0%
TGATGGGAAGAAGAACTCCA+AGG - chr4_3:60284020-60284039 Msa0652560:CDS 45.0%
TGCTGATCTACAGAAGCAGA+TGG - chr4_3:60284065-60284084 Msa0652560:CDS 45.0%
!! TTGGCAGGCCTTTTGTTATC+AGG + chr4_3:60284114-60284133 None:intergenic 45.0%
GATAACAAAAGGCCTGCCAA+AGG - chr4_3:60284114-60284133 Msa0652560:exon 45.0%
!! ATTGATCTTGGCTCTGCCTT+TGG + chr4_3:60284133-60284152 None:intergenic 45.0%
GCCAAGATCAATGCCAAAGT+TGG - chr4_3:60284141-60284160 Msa0652560:intron 45.0%
!! GCCAACTTTGGCATTGATCT+TGG + chr4_3:60284145-60284164 None:intergenic 45.0%
GATCAATGCCAAAGTTGGCA+TGG - chr4_3:60284146-60284165 Msa0652560:intron 45.0%
GACTATCTTGTGGAGAACAC+GGG - chr4_3:60284243-60284262 Msa0652560:intron 45.0%
AGAACACGGGCGACTATTAT+GGG - chr4_3:60284256-60284275 Msa0652560:intron 45.0%
AGCAAGGAGGCCAAAACAAA+AGG + chr4_3:60284352-60284371 None:intergenic 45.0%
GGATTCTTGTTACTAGGGGA+AGG + chr4_3:60284392-60284411 None:intergenic 45.0%
CCCCTAGTAACAAGAATCCA+AGG - chr4_3:60284393-60284412 Msa0652560:intron 45.0%
GGCCTTGGATTCTTGTTACT+AGG + chr4_3:60284398-60284417 None:intergenic 45.0%
CTCATTCTCTTACTGGAGTG+CGG - chr4_3:60284452-60284471 Msa0652560:intron 45.0%
AGAATTGCCCTGCTCTGTTT+AGG - chr4_3:60284582-60284601 Msa0652560:intron 45.0%
CAATAGAGCCTAAACAGAGC+AGG + chr4_3:60284593-60284612 None:intergenic 45.0%
CTATTTCATGGTAGAGTCGC+AGG - chr4_3:60284671-60284690 Msa0652560:five_prime_UTR 45.0%
!! AATTAATAAATAAATAATAC+AGG - chr4_3:60282632-60282651 Msa0652560:intron 5.0%
TGATCTGCAGCTGATGTTCC+TGG - chr4_3:60279126-60279145 Msa0652560:CDS 50.0%
TCCTGGATTTGCAGTTTGCG+AGG - chr4_3:60279143-60279162 Msa0652560:CDS 50.0%
TCCTCGCAAACTGCAAATCC+AGG + chr4_3:60279147-60279166 None:intergenic 50.0%
GGATTTGCAGTTTGCGAGGA+AGG - chr4_3:60279147-60279166 Msa0652560:CDS 50.0%
GCACAGCAGCATCAACAGTA+CGG + chr4_3:60279177-60279196 None:intergenic 50.0%
TGCAATGAAGAAGCGGGAGA+AGG + chr4_3:60279253-60279272 None:intergenic 50.0%
CAAAAGCCGACAGATATCGG+TGG + chr4_3:60279499-60279518 None:intergenic 50.0%
TGGTCGTTAGGTTCAGGCTT+AGG + chr4_3:60279567-60279586 None:intergenic 50.0%
TAAGCCTGAACCTAACGACC+AGG - chr4_3:60279566-60279585 Msa0652560:CDS 50.0%
!! GCGGTATAGAGGCGCTATAT+CGG + chr4_3:60279794-60279813 None:intergenic 50.0%
AAGCAACCACCCGCAACAAA+AGG - chr4_3:60279833-60279852 Msa0652560:CDS 50.0%
! AGCGTTTCGCCTTTTGTTGC+GGG + chr4_3:60279845-60279864 None:intergenic 50.0%
!! TGAGAGGTTAGCTGGCTTGT+GGG + chr4_3:60280009-60280028 None:intergenic 50.0%
!! ATGAGAGGTTAGCTGGCTTG+TGG + chr4_3:60280010-60280029 None:intergenic 50.0%
GAGTTGGAGGGTAAATTGGG+TGG - chr4_3:60280945-60280964 Msa0652560:intron 50.0%
TTTGTTCCTGGAAGTAGGGG+TGG - chr4_3:60281153-60281172 Msa0652560:intron 50.0%
TTGTTCCTGGAAGTAGGGGT+GGG - chr4_3:60281154-60281173 Msa0652560:intron 50.0%
TAAACGAGTTAGGCCAAGCC+GGG + chr4_3:60281228-60281247 None:intergenic 50.0%
TCAGGTGATCCTTCCAGGTA+GGG + chr4_3:60281771-60281790 None:intergenic 50.0%
TTCAGGTGATCCTTCCAGGT+AGG + chr4_3:60281772-60281791 None:intergenic 50.0%
GAGATTCAGGTGATCCTTCC+AGG + chr4_3:60281776-60281795 None:intergenic 50.0%
ACGTGCCTGCATCTATCCAT+GGG + chr4_3:60281957-60281976 None:intergenic 50.0%
TACGTGCCTGCATCTATCCA+TGG + chr4_3:60281958-60281977 None:intergenic 50.0%
GCAATCTGACAATCAGGGTG+TGG - chr4_3:60281978-60281997 Msa0652560:intron 50.0%
ATCTGACAATCAGGGTGTGG+TGG - chr4_3:60281981-60282000 Msa0652560:intron 50.0%
! CAGCCTCTGCTGATTGGTAT+TGG - chr4_3:60282034-60282053 Msa0652560:intron 50.0%
!! GGTATTGGATGGGTTGACAG+TGG - chr4_3:60282049-60282068 Msa0652560:intron 50.0%
!! GTTAGCTCTGATGTGCTGCA+TGG - chr4_3:60282723-60282742 Msa0652560:intron 50.0%
! AGAGAGAGGCTCTGATGGTT+TGG - chr4_3:60282931-60282950 Msa0652560:intron 50.0%
TCAAAATGTGGCAGCCAACC+AGG - chr4_3:60283179-60283198 Msa0652560:intron 50.0%
TAAAGCAGCTCCATCCTGGT+TGG + chr4_3:60283196-60283215 None:intergenic 50.0%
! GAAGGAGGAGGGCATATACT+TGG + chr4_3:60283330-60283349 None:intergenic 50.0%
CCAAGAAAGCAGAAGGAGGA+GGG + chr4_3:60283341-60283360 None:intergenic 50.0%
CCTCCTCCTTCTGCTTTCTT+GGG - chr4_3:60283339-60283358 Msa0652560:intron 50.0%
TTTGGGCCCAAGAAAGCAGA+AGG + chr4_3:60283348-60283367 None:intergenic 50.0%
TGGGCCCAAAATGTGCACTT+TGG - chr4_3:60283358-60283377 Msa0652560:intron 50.0%
GGGCCCAAAATGTGCACTTT+GGG - chr4_3:60283359-60283378 Msa0652560:intron 50.0%
!! GCCGCTCTAGCTTTGAATGA+AGG - chr4_3:60283441-60283460 Msa0652560:intron 50.0%
TCCTTTAAACCAATGCCCCC+GGG + chr4_3:60283495-60283514 None:intergenic 50.0%
! GCTCTTAGTGCAAAGGCACA+AGG - chr4_3:60283531-60283550 Msa0652560:intron 50.0%
TGTTGGCATCCCAGAATGTG+AGG - chr4_3:60283560-60283579 Msa0652560:CDS 50.0%
GTTGGCATCCCAGAATGTGA+GGG - chr4_3:60283561-60283580 Msa0652560:CDS 50.0%
TTGCTGCTCCCTCACATTCT+GGG + chr4_3:60283572-60283591 None:intergenic 50.0%
CAGCAACTGCAAAGTCTCCA+TGG - chr4_3:60283586-60283605 Msa0652560:CDS 50.0%
AAGTCTCCATGGAATGCACC+TGG - chr4_3:60283597-60283616 Msa0652560:CDS 50.0%
AGAGCTCTGCACTCCAACAA+GGG + chr4_3:60283717-60283736 None:intergenic 50.0%
AAGAGCTCTGCACTCCAACA+AGG + chr4_3:60283718-60283737 None:intergenic 50.0%
AGGGCGAGACTATTAGGGAA+TGG - chr4_3:60283755-60283774 Msa0652560:intron 50.0%
TTGCCAGATTACAGTGGACG+TGG - chr4_3:60283835-60283854 Msa0652560:intron 50.0%
CAACCACGTCCACTGTAATC+TGG + chr4_3:60283841-60283860 None:intergenic 50.0%
CAGATTACAGTGGACGTGGT+TGG - chr4_3:60283839-60283858 Msa0652560:intron 50.0%
!! GCAGGCCTTTTGTTATCAGG+TGG + chr4_3:60284111-60284130 None:intergenic 50.0%
CACAGAATGCCCCCACTAAA+TGG - chr4_3:60284189-60284208 Msa0652560:intron 50.0%
GAGAACACGGGCGACTATTA+TGG - chr4_3:60284255-60284274 Msa0652560:intron 50.0%
GTCGCAGGACAAACCTTCAA+AGG - chr4_3:60284686-60284705 Msa0652560:five_prime_UTR 50.0%
TGTTGATGCTGCTGTGCTCG+AGG - chr4_3:60279180-60279199 Msa0652560:CDS 55.0%
! TCGGCTTTTGCAGCTCTGTG+AGG - chr4_3:60279509-60279528 Msa0652560:intron 55.0%
! GCTTTTGCAGCTCTGTGAGG+AGG - chr4_3:60279512-60279531 Msa0652560:intron 55.0%
AGAGCCTGGTCGTTAGGTTC+AGG + chr4_3:60279573-60279592 None:intergenic 55.0%
! GTTTCGCCTTTTGTTGCGGG+TGG + chr4_3:60279842-60279861 None:intergenic 55.0%
!! TAGCTGGCTTGTGGGGCTTA+GGG + chr4_3:60280001-60280020 None:intergenic 55.0%
!! TTAGCTGGCTTGTGGGGCTT+AGG + chr4_3:60280002-60280021 None:intergenic 55.0%
!! GAGAGGTTAGCTGGCTTGTG+GGG + chr4_3:60280008-60280027 None:intergenic 55.0%
CTATTCCCACCCCTACTTCC+AGG + chr4_3:60281162-60281181 None:intergenic 55.0%
CTGGAAGTAGGGGTGGGAAT+AGG - chr4_3:60281160-60281179 Msa0652560:intron 55.0%
! GGCTCGGTCTACTAAAAGCC+CGG - chr4_3:60281207-60281226 Msa0652560:intron 55.0%
GGTCTACTAAAAGCCCGGCT+TGG - chr4_3:60281212-60281231 Msa0652560:intron 55.0%
GCCTATCAAGCCTATCAGGC+CGG - chr4_3:60281320-60281339 Msa0652560:intron 55.0%
ACAGGCTAATAGGCCAAGCC+AGG - chr4_3:60281649-60281668 Msa0652560:intron 55.0%
TGATCCTTCCAGGTAGGGGT+GGG + chr4_3:60281766-60281785 None:intergenic 55.0%
CAGGTGATCCTTCCAGGTAG+GGG + chr4_3:60281770-60281789 None:intergenic 55.0%
ATGGGCAACGAGCGAGTGAT+GGG + chr4_3:60281939-60281958 None:intergenic 55.0%
CGTTGCCCATGGATAGATGC+AGG - chr4_3:60281949-60281968 Msa0652560:intron 55.0%
! AATCAGGGTGTGGTGGTGTG+TGG - chr4_3:60281988-60282007 Msa0652560:intron 55.0%
! ATCAGGGTGTGGTGGTGTGT+GGG - chr4_3:60281989-60282008 Msa0652560:intron 55.0%
! TGGTGGTGTGTGGGAAGTGT+GGG - chr4_3:60281998-60282017 Msa0652560:intron 55.0%
CAGCAGAGGCTGACTATTCC+TGG + chr4_3:60282026-60282045 None:intergenic 55.0%
! ATGGGTTGACAGTGGCAGTG+AGG - chr4_3:60282057-60282076 Msa0652560:intron 55.0%
! TGGGTTGACAGTGGCAGTGA+GGG - chr4_3:60282058-60282077 Msa0652560:intron 55.0%
ACTCGGTAGCTCCAGGTAGA+TGG + chr4_3:60282475-60282494 None:intergenic 55.0%
AGTGCATACTCGGTAGCTCC+AGG + chr4_3:60282482-60282501 None:intergenic 55.0%
GAGCGCAAACACTCAACCTC+AGG - chr4_3:60283153-60283172 Msa0652560:intron 55.0%
AATGTGGCAGCCAACCAGGA+TGG - chr4_3:60283183-60283202 Msa0652560:intron 55.0%
CCCTCCTCCTTCTGCTTTCT+TGG - chr4_3:60283338-60283357 Msa0652560:intron 55.0%
CCCAAGAAAGCAGAAGGAGG+AGG + chr4_3:60283342-60283361 None:intergenic 55.0%
ACTGTCCAAGACCCGCACAA+GGG - chr4_3:60283382-60283401 Msa0652560:intron 55.0%
ACACCAGTCCAACCCTTGTG+CGG + chr4_3:60283397-60283416 None:intergenic 55.0%
! GCTTTGAATGAAGGGCCACC+AGG - chr4_3:60283450-60283469 Msa0652560:intron 55.0%
!! ACCCGGGGGCATTGGTTTAA+AGG - chr4_3:60283491-60283510 Msa0652560:intron 55.0%
GTTGCTGCTCCCTCACATTC+TGG + chr4_3:60283573-60283592 None:intergenic 55.0%
AGCTCTGCACTCCAACAAGG+GGG + chr4_3:60283715-60283734 None:intergenic 55.0%
GAGCTCTGCACTCCAACAAG+GGG + chr4_3:60283716-60283735 None:intergenic 55.0%
!! ATCTTGGCTCTGCCTTTGGC+AGG + chr4_3:60284129-60284148 None:intergenic 55.0%
GACAGCACCCATGCCAACTT+TGG + chr4_3:60284157-60284176 None:intergenic 55.0%
GGGAGAAGGCTCGTTGAGCT+CGG + chr4_3:60279239-60279258 None:intergenic 60.0%
ACCTAACGACCAGGCTCTGC+AGG - chr4_3:60279575-60279594 Msa0652560:CDS 60.0%
!! AGCTGGCTTGTGGGGCTTAG+GGG + chr4_3:60280000-60280019 None:intergenic 60.0%
AGTAGGGGTGGGAATAGGCC+AGG - chr4_3:60281165-60281184 Msa0652560:intron 60.0%
GCCGGCCTGATAGGCTTGAT+AGG + chr4_3:60281324-60281343 None:intergenic 60.0%
CATATACGGGCCGGCCTGAT+AGG + chr4_3:60281333-60281352 None:intergenic 60.0%
AGGTAGGGGTGGGAATGAGC+CGG + chr4_3:60281756-60281775 None:intergenic 60.0%
CATTCCCACCCCTACCTGGA+AGG - chr4_3:60281759-60281778 Msa0652560:intron 60.0%
GTGATCCTTCCAGGTAGGGG+TGG + chr4_3:60281767-60281786 None:intergenic 60.0%
CATGGGCAACGAGCGAGTGA+TGG + chr4_3:60281940-60281959 None:intergenic 60.0%
CATCACTCGCTCGTTGCCCA+TGG - chr4_3:60281938-60281957 Msa0652560:intron 60.0%
! GTGGTGGTGTGTGGGAAGTG+TGG - chr4_3:60281997-60282016 Msa0652560:intron 60.0%
! GTGTGGGAAGTGTGGGTTCC+AGG - chr4_3:60282005-60282024 Msa0652560:intron 60.0%
TTGACAGTGGCAGTGAGGGC+CGG - chr4_3:60282062-60282081 Msa0652560:intron 60.0%
GGGCCCAAGAAAGCAGAAGG+AGG + chr4_3:60283345-60283364 None:intergenic 60.0%
GACTGTCCAAGACCCGCACA+AGG - chr4_3:60283381-60283400 Msa0652560:intron 60.0%
TCCAAGACCCGCACAAGGGT+TGG - chr4_3:60283386-60283405 Msa0652560:intron 60.0%
TCCAACCCTTGTGCGGGTCT+TGG + chr4_3:60283390-60283409 None:intergenic 60.0%
CACCAGTCCAACCCTTGTGC+GGG + chr4_3:60283396-60283415 None:intergenic 60.0%
GAATGAAGGGCCACCAGGCA+TGG - chr4_3:60283455-60283474 Msa0652560:intron 60.0%
ATGGCCCCAGTTCTACGACC+CGG - chr4_3:60283474-60283493 Msa0652560:intron 60.0%
!! GGGGGCATTCTGTGAGAAGC+TGG + chr4_3:60284183-60284202 None:intergenic 60.0%
CTCTTACTGGAGTGCGGCAC+TGG - chr4_3:60284458-60284477 Msa0652560:intron 60.0%
CACTGGAAGCTGCTGGATGC+TGG - chr4_3:60284475-60284494 Msa0652560:intron 60.0%
GCCTGCAGAGCCTGGTCGTT+AGG + chr4_3:60279579-60279598 None:intergenic 65.0%
AACGACCAGGCTCTGCAGGC+TGG - chr4_3:60279579-60279598 Msa0652560:CDS 65.0%
ACGACCAGGCTCTGCAGGCT+GGG - chr4_3:60279580-60279599 Msa0652560:CDS 65.0%
ACCGAGCCATAGGCCCCTGA+CGG + chr4_3:60281195-60281214 None:intergenic 65.0%
GGTAGGGGTGGGAATGAGCC+GGG + chr4_3:60281755-60281774 None:intergenic 65.0%
GGCTCATTCCCACCCCTACC+TGG - chr4_3:60281755-60281774 Msa0652560:intron 65.0%
GACCCGCACAAGGGTTGGAC+TGG - chr4_3:60283391-60283410 Msa0652560:intron 65.0%
AGAACTGGGGCCATGCCTGG+TGG + chr4_3:60283468-60283487 None:intergenic 65.0%
CGTAGAACTGGGGCCATGCC+TGG + chr4_3:60283471-60283490 None:intergenic 65.0%
TGGCCCCAGTTCTACGACCC+GGG - chr4_3:60283475-60283494 Msa0652560:intron 65.0%
TGCCCCCGGGTCGTAGAACT+GGG + chr4_3:60283482-60283501 None:intergenic 65.0%
ATGCCCCCGGGTCGTAGAAC+TGG + chr4_3:60283483-60283502 None:intergenic 65.0%
! GTTCTACGACCCGGGGGCAT+TGG - chr4_3:60283483-60283502 Msa0652560:intron 65.0%
! AGTGCGGCACTGGAAGCTGC+TGG - chr4_3:60284468-60284487 Msa0652560:intron 65.0%
CGACCAGGCTCTGCAGGCTG+GGG - chr4_3:60279581-60279600 Msa0652560:CDS 70.0%
GACCAGGCTCTGCAGGCTGG+GGG - chr4_3:60279582-60279601 Msa0652560:CDS 70.0%
TACCCCCAGCCTGCAGAGCC+TGG + chr4_3:60279587-60279606 None:intergenic 70.0%
GGGGTGGGAATAGGCCAGGC+CGG - chr4_3:60281169-60281188 Msa0652560:intron 70.0%
AATAGGCCAGGCCGGCCGTC+AGG - chr4_3:60281177-60281196 Msa0652560:intron 70.0%
ATAGGCCAGGCCGGCCGTCA+GGG - chr4_3:60281178-60281197 Msa0652560:intron 70.0%
AGCCATAGGCCCCTGACGGC+CGG + chr4_3:60281191-60281210 None:intergenic 70.0%
GCCGTCAGGGGCCTATGGCT+CGG - chr4_3:60281191-60281210 Msa0652560:intron 70.0%
ACAGTGGCAGTGAGGGCCGG+TGG - chr4_3:60282065-60282084 Msa0652560:intron 70.0%
CAGTGGCAGTGAGGGCCGGT+GGG - chr4_3:60282066-60282085 Msa0652560:intron 70.0%
GGCCCCAGTTCTACGACCCG+GGG - chr4_3:60283476-60283495 Msa0652560:intron 70.0%
GCCCCAGTTCTACGACCCGG+GGG - chr4_3:60283477-60283496 Msa0652560:intron 70.0%
GCCCCCGGGTCGTAGAACTG+GGG + chr4_3:60283481-60283500 None:intergenic 70.0%
TAGGCCAGGCCGGCCGTCAG+GGG - chr4_3:60281179-60281198 Msa0652560:intron 75.0%
TGGCAGTGAGGGCCGGTGGG+AGG - chr4_3:60282069-60282088 Msa0652560:intron 75.0%
! TAGGCCCCTGACGGCCGGCC+TGG + chr4_3:60281186-60281205 None:intergenic 80.0%
! GGCCGGCCGTCAGGGGCCTA+TGG - chr4_3:60281186-60281205 Msa0652560:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 60278336 60284829 60278336 ID=Msa0652560;Name=Msa0652560
chr4_3 mRNA 60278336 60284829 60278336 ID=Msa0652560-mRNA-1;Parent=Msa0652560;Name=Msa0652560-mRNA-1;_AED=0.02;_eAED=0.02;_QI=194|1|1|1|0.75|0.6|5|545|477
chr4_3 exon 60278336 60279434 60278336 ID=Msa0652560-mRNA-1:exon:16352;Parent=Msa0652560-mRNA-1
chr4_3 exon 60279547 60280045 60279547 ID=Msa0652560-mRNA-1:exon:16351;Parent=Msa0652560-mRNA-1
chr4_3 exon 60283542 60283691 60283542 ID=Msa0652560-mRNA-1:exon:16350;Parent=Msa0652560-mRNA-1
chr4_3 exon 60283889 60284145 60283889 ID=Msa0652560-mRNA-1:exon:16349;Parent=Msa0652560-mRNA-1
chr4_3 exon 60284662 60284829 60284662 ID=Msa0652560-mRNA-1:exon:16348;Parent=Msa0652560-mRNA-1
chr4_3 five_prime_UTR 60284662 60284829 60284662 ID=Msa0652560-mRNA-1:five_prime_utr;Parent=Msa0652560-mRNA-1
chr4_3 five_prime_UTR 60284120 60284145 60284120 ID=Msa0652560-mRNA-1:five_prime_utr;Parent=Msa0652560-mRNA-1
chr4_3 CDS 60283889 60284119 60283889 ID=Msa0652560-mRNA-1:cds;Parent=Msa0652560-mRNA-1
chr4_3 CDS 60283542 60283691 60283542 ID=Msa0652560-mRNA-1:cds;Parent=Msa0652560-mRNA-1
chr4_3 CDS 60279547 60280045 60279547 ID=Msa0652560-mRNA-1:cds;Parent=Msa0652560-mRNA-1
chr4_3 CDS 60278881 60279434 60278881 ID=Msa0652560-mRNA-1:cds;Parent=Msa0652560-mRNA-1
chr4_3 three_prime_UTR 60278336 60278880 60278336 ID=Msa0652560-mRNA-1:three_prime_utr;Parent=Msa0652560-mRNA-1
Gene Sequence

>Msa0652560

ATGATGAAGAAGGGTTCGAAGAGAAGCTGCAAATCTGCATCACATAGTCTTTTCAAGGACAAGGCGAAGAACCGTGTTGATGATCTGCAGCTGATGTTCCTGGATTTGCAGTTTGCGAGGAAGGAAAGCCGTACTGTTGATGCTGCTGTGCTCGAGGAGCAAGTTCATCAAATGCTTCGTGAGTGGAAATCCGAGCTCAACGAGCCTTCTCCCGCTTCTTCATTGCAGCAAGGTGGAAGTCTTGGGTCATACTCCACCGATATCTGTCGGCTTTTGCAGCTCTGTGAGGAGGAAGATGACGCATCTAGTCCATTAACTGCACCTAAGCCTGAACCTAACGACCAGGCTCTGCAGGCTGGGGGTAACATCATTTTTCAAGAGGGCCAACAGCAACATGATTTCCCATTGGTTGATGAGCGCAAACACTCAACCTCAGGAGTTCAAAATGTGGCAGCCAACCAGGATGGAGCTGCTTTAGAATATCACCAGTTTGATTTGCAACAGGACTTTGATCATAATTTATATGCTGGTTTCAATGGTACAAGTTATTGTGAGGAGGATGCTGTTCCTCTTATATCTAGCTATCTACCAAGTATATGCCCTCCTCCTTCTGCTTTCTTGGGCCCAAAATGTGCACTTTGGGACTGTCCAAGACCCGCACAAGGGTTGGACTGGTGTCAAGACTATTGTAGTAGCTTTCATGCCGCTCTAGCTTTGAATGAAGGGCCACCAGGCATGGCCCCAGTTCTACGACCCGGGGGCATTGGTTTAAAGGATAACTTACTTTTTTCTGCTCTTAGTGCAAAGGCACAAGGAAAAGATGTTGGCATCCCAGAATGTGAGGGAGCAGCAACTGCAAAGTCTCCATGGAATGCACCTGAGCTCTTTGATCTTTCTGTTCTTGAGGGCGAGACTATTAGGGAATGGCTCTTCTTTGATAAGCCTCGAAGAGCATTTGAAAGTGGAAACAGAAAGCAGAGGTCATTGCCAGATTACAGTGGACGTGGTTGGCACGAATCTAGAAAGCAAGTTATCAACGAATTTGGAGGTCTGAAGAGATCCTATTATATGGATCCACAGCCTCTGAACCATTTTGAATGGCACCTTTACGAATATGAGATTAGCAAGTGTGATGTATGTGCCTTATACCGTTTAGAACTAAAGCTTGTTGATGGGAAGAAGAACTCCAAGGCAAGAATAACAAATGATTCAGTTGCTGATCTACAGAAGCAGATGGTAAAGCTCTCTGCTGAGTTTCCACCTGATAACAAAAGGCCTGCCAAAGGCAGAGCCAAGATCAATGCCAAAGTTGGCATGGGTGCTGTCTATCCAGCTTCTCACAGAATGCCCCCACTAAATGGAACATATGAATATGGGTTAGCTGCACCATATGACTATCTTGTGGAGAACACGGGCGACTATTATGGGACATGA
Protein sequence

>Msa0652560

MMKKGSKRSCKSASHSLFKDKAKNRVDDLQLMFLDLQFARKESRTVDAAVLEEQVHQMLREWKSELNEPSPASSLQQGGSLGSYSTDICRLLQLCEEEDDASSPLTAPKPEPNDQALQAGGNIIFQEGQQQHDFPLVDERKHSTSGVQNVAANQDGAALEYHQFDLQQDFDHNLYAGFNGTSYCEEDAVPLISSYLPSICPPPSAFLGPKCALWDCPRPAQGLDWCQDYCSSFHAALALNEGPPGMAPVLRPGGIGLKDNLLFSALSAKAQGKDVGIPECEGAATAKSPWNAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVINEFGGLKRSYYMDPQPLNHFEWHLYEYEISKCDVCALYRLELKLVDGKKNSKARITNDSVADLQKQMVKLSAEFPPDNKRPAKGRAKINAKVGMGAVYPASHRMPPLNGTYEYGLAAPYDYLVENTGDYYGT*