AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0312690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0312690 MtrunA17_Chr2g0282081 99.061 213 2 0 1 213 1 213 2.48e-155 428
Msa0312690 MtrunA17_Chr8g0377351 42.308 208 109 3 11 211 7 210 8.17e-49 159
Msa0312690 MtrunA17_Chr3g0122531 36.649 191 120 1 22 211 23 213 1.59e-36 127
Msa0312690 MtrunA17_Chr4g0047441 44.079 152 64 2 40 191 1 131 1.09e-33 117
Msa0312690 MtrunA17_Chr3g0122501 39.604 202 107 2 21 211 9 206 1.76e-32 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0312690 AT3G05500.1 62.100 219 60 3 17 212 13 231 4.59e-91 267
Msa0312690 AT2G47780.1 47.396 192 101 0 20 211 36 227 1.33e-63 197
Msa0312690 AT3G05500.2 60.140 143 35 2 92 212 17 159 3.21e-51 164
Msa0312690 AT1G67360.1 39.394 198 113 2 21 211 9 206 1.07e-37 131
Msa0312690 AT1G67360.2 39.394 198 113 2 21 211 9 206 1.07e-37 131

Find 75 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAGGTGGTGAGGGAATTT+AGG 0.106670 2_4:-7870811 None:intergenic
GTGATCGGTGAATTGATATT+AGG 0.185956 2_4:-7870907 None:intergenic
TGAGGTGGTGAGGGAATTTA+GGG 0.255695 2_4:-7870810 None:intergenic
GGTGTTGTTGAATCTGCTTC+TGG 0.305257 2_4:+7871433 Msa0312690:CDS
TCACTACAATAAGCAGCTTT+TGG 0.309551 2_4:-7871571 None:intergenic
AGGGTTTGAAAAGGGAAAAT+TGG 0.318652 2_4:-7870881 None:intergenic
GGTTGTGTCGAATTGTTCTT+TGG 0.331123 2_4:+7871713 Msa0312690:three_prime_UTR
CACAAGATTGGTATTGCATT+AGG 0.337337 2_4:-7871985 None:intergenic
CATGTGAATAAATGAATTAT+TGG 0.339518 2_4:+7871942 Msa0312690:three_prime_UTR
CTGCTTAGTTGATATGATTT+CGG 0.361753 2_4:+7871692 Msa0312690:exon
TGATCGGTGAATTGATATTA+GGG 0.370599 2_4:-7870906 None:intergenic
GGTGAATTGATATTAGGGTT+AGG 0.372007 2_4:-7870901 None:intergenic
ACAGCGCACTGCTCAGCTTT+CGG 0.373453 2_4:-7871487 None:intergenic
TTATTGGTGACTCATGATTC+TGG 0.376651 2_4:+7871958 Msa0312690:three_prime_UTR
TTGCGAATTGCACGAATTCA+AGG 0.379176 2_4:-7871138 None:intergenic
GGGTTTGAAAAGGGAAAATT+GGG 0.383745 2_4:-7870880 None:intergenic
GTGAATTGATATTAGGGTTA+GGG 0.390835 2_4:-7870900 None:intergenic
AGTCTATGGTAGTATGATAC+TGG 0.397279 2_4:+7871889 Msa0312690:three_prime_UTR
AGCAGTGCGCTGTTTCCGCT+TGG 0.406662 2_4:+7871497 Msa0312690:CDS
AAGATGAGTTGGGTTATATA+TGG 0.408114 2_4:-7870842 None:intergenic
TCTTCGACGGTGTCAACGCC+GGG 0.411977 2_4:-7871229 None:intergenic
CAATTGTTGTTGTTGTGGTT+CGG 0.426722 2_4:-7870938 None:intergenic
GAAACCTTCTTGACGTTAGT+AGG 0.432023 2_4:-7871370 None:intergenic
GTGTCAACGCCGGGTTTCAA+TGG 0.442609 2_4:-7871220 None:intergenic
CGAACCACAACAACAACAAT+TGG 0.444881 2_4:+7870939 Msa0312690:CDS
TGAGAAGCTCGACGGGGACT+TGG 0.446518 2_4:-7871294 None:intergenic
TTGTTGTGGTTCGGCGGCCA+TGG 0.446829 2_4:-7870929 None:intergenic
ATTAGGGTTAGGGTTTGAAA+AGG 0.453815 2_4:-7870890 None:intergenic
GTTCGTATTGAGCACAAGAT+TGG 0.457170 2_4:-7871997 None:intergenic
TTCTTCGACGGTGTCAACGC+CGG 0.458313 2_4:-7871230 None:intergenic
GAAAAGGGAAAATTGGGAAT+GGG 0.478733 2_4:-7870874 None:intergenic
TGGTGGAATTTGTCGTAGAC+TGG 0.480970 2_4:-7871274 None:intergenic
GCGCTGTTTCCGCTTGGAAG+AGG 0.485947 2_4:+7871503 Msa0312690:CDS
ACGTATTTGAGAAGCTCGAC+GGG 0.492555 2_4:-7871301 None:intergenic
GTGGATAGTGCGACTTTGAA+TGG 0.505433 2_4:+7871792 Msa0312690:three_prime_UTR
AGTTTCTGCATATCTTCCAT+TGG 0.511804 2_4:+7871639 Msa0312690:CDS
AAACTGTTCAATTTCTGGTG+TGG 0.515818 2_4:+7871773 Msa0312690:three_prime_UTR
TCCTACGCTAAGGAACGTTC+CGG 0.516851 2_4:+7871196 Msa0312690:CDS
GAAGCTCGACGGGGACTTGG+TGG 0.519628 2_4:-7871291 None:intergenic
GAGAATCGCGCATCGCATAA+CGG 0.523618 2_4:-7871170 None:intergenic
TTAGGGTTAGGGTTTGAAAA+GGG 0.532905 2_4:-7870889 None:intergenic
ATCTTCTCAGTAGGAACCAA+TGG 0.534408 2_4:-7871655 None:intergenic
TATATATGGAAGAGGAAATG+AGG 0.535233 2_4:-7870828 None:intergenic
TGAAAAGGGAAAATTGGGAA+TGG 0.536602 2_4:-7870875 None:intergenic
AAGAGGAAATGAGGTGGTGA+GGG 0.537299 2_4:-7870819 None:intergenic
GTTGTTTCGAGTGCGGAGAA+AGG 0.541026 2_4:+7871610 Msa0312690:CDS
GGTTCGGCGGCCATGGTGAT+CGG 0.541124 2_4:-7870922 None:intergenic
TCGCGCATCGCATAACGGCT+TGG 0.544794 2_4:-7871165 None:intergenic
GAAGAGGAAATGAGGTGGTG+AGG 0.548134 2_4:-7870820 None:intergenic
GTCAGCGAAGTCCGTCGCAC+CGG 0.549076 2_4:+7871412 Msa0312690:CDS
AGTTGGGTTATATATGGAAG+AGG 0.555379 2_4:-7870836 None:intergenic
AGTACCAATTGTTGTTGTTG+TGG 0.556611 2_4:-7870943 None:intergenic
GTTTCCTACTGTTGCAAACG+TGG 0.564096 2_4:+7871543 Msa0312690:CDS
TGTTCCTACTAACGTCAAGA+AGG 0.568434 2_4:+7871366 Msa0312690:CDS
ATGACGATCGATCTCAGAAA+CGG 0.570897 2_4:-7871344 None:intergenic
TGGATAGTGCGACTTTGAAT+GGG 0.574162 2_4:+7871793 Msa0312690:three_prime_UTR
ATTCAACAACACCGGTGCGA+CGG 0.585997 2_4:-7871423 None:intergenic
AACGCCGGGTTTCAATGGAC+CGG 0.601419 2_4:-7871215 None:intergenic
ACCTTAGCAATCTTCTCAGT+AGG 0.605822 2_4:-7871664 None:intergenic
TCCTACTGAGAAGATTGCTA+AGG 0.606990 2_4:+7871663 Msa0312690:CDS
GACGTATTTGAGAAGCTCGA+CGG 0.607045 2_4:-7871302 None:intergenic
CGTTCCGGTCCATTGAAACC+CGG 0.611239 2_4:+7871211 Msa0312690:CDS
GAAGCCGTTAAAACTGTCGT+TGG 0.611861 2_4:+7871250 Msa0312690:CDS
TGAAGCTGTTGTTTCGAGTG+CGG 0.612597 2_4:+7871603 Msa0312690:CDS
GATTCTCTATTCCTACGCTA+AGG 0.614531 2_4:+7871186 Msa0312690:CDS
AAAACCACGTTTGCAACAGT+AGG 0.643849 2_4:-7871547 None:intergenic
TTGTTGTTGTTGTGGTTCGG+CGG 0.643985 2_4:-7870935 None:intergenic
ACGGACTTCGCTGACGACAG+AGG 0.645739 2_4:-7871404 None:intergenic
CTGATTCAACCTCTTCCAAG+CGG 0.649421 2_4:-7871512 None:intergenic
TATCAATTCACCGATCACCA+TGG 0.660917 2_4:+7870912 Msa0312690:exon
TTTGCAACAGTAGGAAACAA+AGG 0.663535 2_4:-7871538 None:intergenic
AGAAGCAGATTCAACAACAC+CGG 0.667309 2_4:-7871431 None:intergenic
ATATGGAAGAGGAAATGAGG+TGG 0.704754 2_4:-7870825 None:intergenic
ACCGGAACGTTCCTTAGCGT+AGG 0.708340 2_4:-7871197 None:intergenic
CGTATTTGAGAAGCTCGACG+GGG 0.734758 2_4:-7871300 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATGTTGAATGTTTAAT+TGG + chr2_4:7871014-7871033 Msa0312690:intron 15.0%
!!! ATTTAATTTGATTTGATTGA+AGG + chr2_4:7871066-7871085 Msa0312690:intron 15.0%
!! TTATATGTTGAATGTTTAAT+TGG + chr2_4:7871014-7871033 Msa0312690:intron 15.0%
!!! ATTTAATTTGATTTGATTGA+AGG + chr2_4:7871066-7871085 Msa0312690:intron 15.0%
!!! TTTTAAAACTGTTCAATTTC+TGG + chr2_4:7871768-7871787 Msa0312690:three_prime_UTR 20.0%
!! CATGTGAATAAATGAATTAT+TGG + chr2_4:7871942-7871961 Msa0312690:three_prime_UTR 20.0%
!!! TTTTAAAACTGTTCAATTTC+TGG + chr2_4:7871768-7871787 Msa0312690:three_prime_UTR 20.0%
!! CATGTGAATAAATGAATTAT+TGG + chr2_4:7871942-7871961 Msa0312690:three_prime_UTR 20.0%
!!! TCAGTTTTTCAATACTATAG+CGG - chr2_4:7870737-7870756 None:intergenic 25.0%
!! TTTTCAATGGTTATAGTCTA+TGG + chr2_4:7871875-7871894 Msa0312690:three_prime_UTR 25.0%
!!! TCAGTTTTTCAATACTATAG+CGG - chr2_4:7870737-7870756 None:intergenic 25.0%
!! TTTTCAATGGTTATAGTCTA+TGG + chr2_4:7871875-7871894 Msa0312690:three_prime_UTR 25.0%
TATATATGGAAGAGGAAATG+AGG - chr2_4:7870831-7870850 None:intergenic 30.0%
! AAGATGAGTTGGGTTATATA+TGG - chr2_4:7870845-7870864 None:intergenic 30.0%
GAAAAATGTGAAGATGAGTT+GGG - chr2_4:7870855-7870874 None:intergenic 30.0%
GTGAATTGATATTAGGGTTA+GGG - chr2_4:7870903-7870922 None:intergenic 30.0%
TGATCGGTGAATTGATATTA+GGG - chr2_4:7870909-7870928 None:intergenic 30.0%
! CTGCTTAGTTGATATGATTT+CGG + chr2_4:7871692-7871711 Msa0312690:exon 30.0%
CATTGAAAAACAGTAGAAAC+AGG - chr2_4:7871864-7871883 None:intergenic 30.0%
!!! CTGTTTCTACTGTTTTTCAA+TGG + chr2_4:7871862-7871881 Msa0312690:three_prime_UTR 30.0%
TATATATGGAAGAGGAAATG+AGG - chr2_4:7870831-7870850 None:intergenic 30.0%
! AAGATGAGTTGGGTTATATA+TGG - chr2_4:7870845-7870864 None:intergenic 30.0%
GAAAAATGTGAAGATGAGTT+GGG - chr2_4:7870855-7870874 None:intergenic 30.0%
GTGAATTGATATTAGGGTTA+GGG - chr2_4:7870903-7870922 None:intergenic 30.0%
TGATCGGTGAATTGATATTA+GGG - chr2_4:7870909-7870928 None:intergenic 30.0%
! CTGCTTAGTTGATATGATTT+CGG + chr2_4:7871692-7871711 Msa0312690:exon 30.0%
CATTGAAAAACAGTAGAAAC+AGG - chr2_4:7871864-7871883 None:intergenic 30.0%
!!! CTGTTTCTACTGTTTTTCAA+TGG + chr2_4:7871862-7871881 Msa0312690:three_prime_UTR 30.0%
AGTTGGGTTATATATGGAAG+AGG - chr2_4:7870839-7870858 None:intergenic 35.0%
GGAAAAATGTGAAGATGAGT+TGG - chr2_4:7870856-7870875 None:intergenic 35.0%
GAAAAGGGAAAATTGGGAAT+GGG - chr2_4:7870877-7870896 None:intergenic 35.0%
TGAAAAGGGAAAATTGGGAA+TGG - chr2_4:7870878-7870897 None:intergenic 35.0%
GGGTTTGAAAAGGGAAAATT+GGG - chr2_4:7870883-7870902 None:intergenic 35.0%
AGGGTTTGAAAAGGGAAAAT+TGG - chr2_4:7870884-7870903 None:intergenic 35.0%
TTAGGGTTAGGGTTTGAAAA+GGG - chr2_4:7870892-7870911 None:intergenic 35.0%
ATTAGGGTTAGGGTTTGAAA+AGG - chr2_4:7870893-7870912 None:intergenic 35.0%
GGTGAATTGATATTAGGGTT+AGG - chr2_4:7870904-7870923 None:intergenic 35.0%
GTGATCGGTGAATTGATATT+AGG - chr2_4:7870910-7870929 None:intergenic 35.0%
! CAATTGTTGTTGTTGTGGTT+CGG - chr2_4:7870941-7870960 None:intergenic 35.0%
! AGTACCAATTGTTGTTGTTG+TGG - chr2_4:7870946-7870965 None:intergenic 35.0%
TTTGCAACAGTAGGAAACAA+AGG - chr2_4:7871541-7871560 None:intergenic 35.0%
! TCACTACAATAAGCAGCTTT+TGG - chr2_4:7871574-7871593 None:intergenic 35.0%
AGTTTCTGCATATCTTCCAT+TGG + chr2_4:7871639-7871658 Msa0312690:CDS 35.0%
!! AAACTGTTCAATTTCTGGTG+TGG + chr2_4:7871773-7871792 Msa0312690:three_prime_UTR 35.0%
AGTCTATGGTAGTATGATAC+TGG + chr2_4:7871889-7871908 Msa0312690:three_prime_UTR 35.0%
! TTATTGGTGACTCATGATTC+TGG + chr2_4:7871958-7871977 Msa0312690:three_prime_UTR 35.0%
CACAAGATTGGTATTGCATT+AGG - chr2_4:7871988-7872007 None:intergenic 35.0%
AGTTGGGTTATATATGGAAG+AGG - chr2_4:7870839-7870858 None:intergenic 35.0%
GGAAAAATGTGAAGATGAGT+TGG - chr2_4:7870856-7870875 None:intergenic 35.0%
GAAAAGGGAAAATTGGGAAT+GGG - chr2_4:7870877-7870896 None:intergenic 35.0%
TGAAAAGGGAAAATTGGGAA+TGG - chr2_4:7870878-7870897 None:intergenic 35.0%
GGGTTTGAAAAGGGAAAATT+GGG - chr2_4:7870883-7870902 None:intergenic 35.0%
AGGGTTTGAAAAGGGAAAAT+TGG - chr2_4:7870884-7870903 None:intergenic 35.0%
TTAGGGTTAGGGTTTGAAAA+GGG - chr2_4:7870892-7870911 None:intergenic 35.0%
ATTAGGGTTAGGGTTTGAAA+AGG - chr2_4:7870893-7870912 None:intergenic 35.0%
GGTGAATTGATATTAGGGTT+AGG - chr2_4:7870904-7870923 None:intergenic 35.0%
GTGATCGGTGAATTGATATT+AGG - chr2_4:7870910-7870929 None:intergenic 35.0%
! CAATTGTTGTTGTTGTGGTT+CGG - chr2_4:7870941-7870960 None:intergenic 35.0%
! AGTACCAATTGTTGTTGTTG+TGG - chr2_4:7870946-7870965 None:intergenic 35.0%
TTTGCAACAGTAGGAAACAA+AGG - chr2_4:7871541-7871560 None:intergenic 35.0%
! TCACTACAATAAGCAGCTTT+TGG - chr2_4:7871574-7871593 None:intergenic 35.0%
AGTTTCTGCATATCTTCCAT+TGG + chr2_4:7871639-7871658 Msa0312690:CDS 35.0%
!! AAACTGTTCAATTTCTGGTG+TGG + chr2_4:7871773-7871792 Msa0312690:three_prime_UTR 35.0%
AGTCTATGGTAGTATGATAC+TGG + chr2_4:7871889-7871908 Msa0312690:three_prime_UTR 35.0%
! TTATTGGTGACTCATGATTC+TGG + chr2_4:7871958-7871977 Msa0312690:three_prime_UTR 35.0%
CACAAGATTGGTATTGCATT+AGG - chr2_4:7871988-7872007 None:intergenic 35.0%
TTAGAGAGAAAAACGAAGGG+TGG - chr2_4:7870790-7870809 None:intergenic 40.0%
GGGTTAGAGAGAAAAACGAA+GGG - chr2_4:7870793-7870812 None:intergenic 40.0%
AGGGTTAGAGAGAAAAACGA+AGG - chr2_4:7870794-7870813 None:intergenic 40.0%
ATATGGAAGAGGAAATGAGG+TGG - chr2_4:7870828-7870847 None:intergenic 40.0%
TATCAATTCACCGATCACCA+TGG + chr2_4:7870912-7870931 Msa0312690:exon 40.0%
CGAACCACAACAACAACAAT+TGG + chr2_4:7870939-7870958 Msa0312690:CDS 40.0%
TTGCGAATTGCACGAATTCA+AGG - chr2_4:7871141-7871160 None:intergenic 40.0%
GATTCTCTATTCCTACGCTA+AGG + chr2_4:7871186-7871205 Msa0312690:CDS 40.0%
!! AGTTTTAACGGCTTCTTCGA+CGG - chr2_4:7871245-7871264 None:intergenic 40.0%
!! TGGTCCAACGACAGTTTTAA+CGG - chr2_4:7871257-7871276 None:intergenic 40.0%
ATGACGATCGATCTCAGAAA+CGG - chr2_4:7871347-7871366 None:intergenic 40.0%
TGTTCCTACTAACGTCAAGA+AGG + chr2_4:7871366-7871385 Msa0312690:CDS 40.0%
GAAACCTTCTTGACGTTAGT+AGG - chr2_4:7871373-7871392 None:intergenic 40.0%
AGAAGCAGATTCAACAACAC+CGG - chr2_4:7871434-7871453 None:intergenic 40.0%
AAAACCACGTTTGCAACAGT+AGG - chr2_4:7871550-7871569 None:intergenic 40.0%
ATCTTCTCAGTAGGAACCAA+TGG - chr2_4:7871658-7871677 None:intergenic 40.0%
TCCTACTGAGAAGATTGCTA+AGG + chr2_4:7871663-7871682 Msa0312690:CDS 40.0%
ACCTTAGCAATCTTCTCAGT+AGG - chr2_4:7871667-7871686 None:intergenic 40.0%
GGTTGTGTCGAATTGTTCTT+TGG + chr2_4:7871713-7871732 Msa0312690:three_prime_UTR 40.0%
TGGATAGTGCGACTTTGAAT+GGG + chr2_4:7871793-7871812 Msa0312690:three_prime_UTR 40.0%
TTAGAGAGAAAAACGAAGGG+TGG - chr2_4:7870790-7870809 None:intergenic 40.0%
GGGTTAGAGAGAAAAACGAA+GGG - chr2_4:7870793-7870812 None:intergenic 40.0%
AGGGTTAGAGAGAAAAACGA+AGG - chr2_4:7870794-7870813 None:intergenic 40.0%
ATATGGAAGAGGAAATGAGG+TGG - chr2_4:7870828-7870847 None:intergenic 40.0%
TATCAATTCACCGATCACCA+TGG + chr2_4:7870912-7870931 Msa0312690:exon 40.0%
CGAACCACAACAACAACAAT+TGG + chr2_4:7870939-7870958 Msa0312690:CDS 40.0%
TTGCGAATTGCACGAATTCA+AGG - chr2_4:7871141-7871160 None:intergenic 40.0%
GATTCTCTATTCCTACGCTA+AGG + chr2_4:7871186-7871205 Msa0312690:CDS 40.0%
!! AGTTTTAACGGCTTCTTCGA+CGG - chr2_4:7871245-7871264 None:intergenic 40.0%
!! TGGTCCAACGACAGTTTTAA+CGG - chr2_4:7871257-7871276 None:intergenic 40.0%
ATGACGATCGATCTCAGAAA+CGG - chr2_4:7871347-7871366 None:intergenic 40.0%
TGTTCCTACTAACGTCAAGA+AGG + chr2_4:7871366-7871385 Msa0312690:CDS 40.0%
GAAACCTTCTTGACGTTAGT+AGG - chr2_4:7871373-7871392 None:intergenic 40.0%
AGAAGCAGATTCAACAACAC+CGG - chr2_4:7871434-7871453 None:intergenic 40.0%
AAAACCACGTTTGCAACAGT+AGG - chr2_4:7871550-7871569 None:intergenic 40.0%
ATCTTCTCAGTAGGAACCAA+TGG - chr2_4:7871658-7871677 None:intergenic 40.0%
TCCTACTGAGAAGATTGCTA+AGG + chr2_4:7871663-7871682 Msa0312690:CDS 40.0%
ACCTTAGCAATCTTCTCAGT+AGG - chr2_4:7871667-7871686 None:intergenic 40.0%
GGTTGTGTCGAATTGTTCTT+TGG + chr2_4:7871713-7871732 Msa0312690:three_prime_UTR 40.0%
TGGATAGTGCGACTTTGAAT+GGG + chr2_4:7871793-7871812 Msa0312690:three_prime_UTR 40.0%
TGAAAAACTGAGACGCGTGT+TGG + chr2_4:7870746-7870765 Msa0312690:five_prime_UTR 45.0%
TGAGGTGGTGAGGGAATTTA+GGG - chr2_4:7870813-7870832 None:intergenic 45.0%
ATGAGGTGGTGAGGGAATTT+AGG - chr2_4:7870814-7870833 None:intergenic 45.0%
AAGAGGAAATGAGGTGGTGA+GGG - chr2_4:7870822-7870841 None:intergenic 45.0%
! TTGTTGTTGTTGTGGTTCGG+CGG - chr2_4:7870938-7870957 None:intergenic 45.0%
GAAGCCGTTAAAACTGTCGT+TGG + chr2_4:7871250-7871269 Msa0312690:CDS 45.0%
TGGTGGAATTTGTCGTAGAC+TGG - chr2_4:7871277-7871296 None:intergenic 45.0%
ACGTATTTGAGAAGCTCGAC+GGG - chr2_4:7871304-7871323 None:intergenic 45.0%
GACGTATTTGAGAAGCTCGA+CGG - chr2_4:7871305-7871324 None:intergenic 45.0%
!! GGTGTTGTTGAATCTGCTTC+TGG + chr2_4:7871433-7871452 Msa0312690:CDS 45.0%
CTGATTCAACCTCTTCCAAG+CGG - chr2_4:7871515-7871534 None:intergenic 45.0%
GTTTCCTACTGTTGCAAACG+TGG + chr2_4:7871543-7871562 Msa0312690:CDS 45.0%
!! TGAAGCTGTTGTTTCGAGTG+CGG + chr2_4:7871603-7871622 Msa0312690:CDS 45.0%
GTGGATAGTGCGACTTTGAA+TGG + chr2_4:7871792-7871811 Msa0312690:three_prime_UTR 45.0%
TGAAAAACTGAGACGCGTGT+TGG + chr2_4:7870746-7870765 Msa0312690:five_prime_UTR 45.0%
TGAGGTGGTGAGGGAATTTA+GGG - chr2_4:7870813-7870832 None:intergenic 45.0%
ATGAGGTGGTGAGGGAATTT+AGG - chr2_4:7870814-7870833 None:intergenic 45.0%
AAGAGGAAATGAGGTGGTGA+GGG - chr2_4:7870822-7870841 None:intergenic 45.0%
! TTGTTGTTGTTGTGGTTCGG+CGG - chr2_4:7870938-7870957 None:intergenic 45.0%
GAAGCCGTTAAAACTGTCGT+TGG + chr2_4:7871250-7871269 Msa0312690:CDS 45.0%
TGGTGGAATTTGTCGTAGAC+TGG - chr2_4:7871277-7871296 None:intergenic 45.0%
ACGTATTTGAGAAGCTCGAC+GGG - chr2_4:7871304-7871323 None:intergenic 45.0%
GACGTATTTGAGAAGCTCGA+CGG - chr2_4:7871305-7871324 None:intergenic 45.0%
!! GGTGTTGTTGAATCTGCTTC+TGG + chr2_4:7871433-7871452 Msa0312690:CDS 45.0%
CTGATTCAACCTCTTCCAAG+CGG - chr2_4:7871515-7871534 None:intergenic 45.0%
GTTTCCTACTGTTGCAAACG+TGG + chr2_4:7871543-7871562 Msa0312690:CDS 45.0%
!! TGAAGCTGTTGTTTCGAGTG+CGG + chr2_4:7871603-7871622 Msa0312690:CDS 45.0%
GTGGATAGTGCGACTTTGAA+TGG + chr2_4:7871792-7871811 Msa0312690:three_prime_UTR 45.0%
GAAGAGGAAATGAGGTGGTG+AGG - chr2_4:7870823-7870842 None:intergenic 50.0%
GAGAATCGCGCATCGCATAA+CGG - chr2_4:7871173-7871192 None:intergenic 50.0%
TCCTACGCTAAGGAACGTTC+CGG + chr2_4:7871196-7871215 Msa0312690:CDS 50.0%
CGTATTTGAGAAGCTCGACG+GGG - chr2_4:7871303-7871322 None:intergenic 50.0%
ATTCAACAACACCGGTGCGA+CGG - chr2_4:7871426-7871445 None:intergenic 50.0%
! GTTGTTTCGAGTGCGGAGAA+AGG + chr2_4:7871610-7871629 Msa0312690:CDS 50.0%
GAAGAGGAAATGAGGTGGTG+AGG - chr2_4:7870823-7870842 None:intergenic 50.0%
GAGAATCGCGCATCGCATAA+CGG - chr2_4:7871173-7871192 None:intergenic 50.0%
TCCTACGCTAAGGAACGTTC+CGG + chr2_4:7871196-7871215 Msa0312690:CDS 50.0%
CGTATTTGAGAAGCTCGACG+GGG - chr2_4:7871303-7871322 None:intergenic 50.0%
ATTCAACAACACCGGTGCGA+CGG - chr2_4:7871426-7871445 None:intergenic 50.0%
! GTTGTTTCGAGTGCGGAGAA+AGG + chr2_4:7871610-7871629 Msa0312690:CDS 50.0%
ACCGGAACGTTCCTTAGCGT+AGG - chr2_4:7871200-7871219 None:intergenic 55.0%
CGTTCCGGTCCATTGAAACC+CGG + chr2_4:7871211-7871230 Msa0312690:CDS 55.0%
AACGCCGGGTTTCAATGGAC+CGG - chr2_4:7871218-7871237 None:intergenic 55.0%
GTGTCAACGCCGGGTTTCAA+TGG - chr2_4:7871223-7871242 None:intergenic 55.0%
! TTCTTCGACGGTGTCAACGC+CGG - chr2_4:7871233-7871252 None:intergenic 55.0%
ACAGCGCACTGCTCAGCTTT+CGG - chr2_4:7871490-7871509 None:intergenic 55.0%
ACCGGAACGTTCCTTAGCGT+AGG - chr2_4:7871200-7871219 None:intergenic 55.0%
CGTTCCGGTCCATTGAAACC+CGG + chr2_4:7871211-7871230 Msa0312690:CDS 55.0%
AACGCCGGGTTTCAATGGAC+CGG - chr2_4:7871218-7871237 None:intergenic 55.0%
GTGTCAACGCCGGGTTTCAA+TGG - chr2_4:7871223-7871242 None:intergenic 55.0%
! TTCTTCGACGGTGTCAACGC+CGG - chr2_4:7871233-7871252 None:intergenic 55.0%
ACAGCGCACTGCTCAGCTTT+CGG - chr2_4:7871490-7871509 None:intergenic 55.0%
! TTGTTGTGGTTCGGCGGCCA+TGG - chr2_4:7870932-7870951 None:intergenic 60.0%
TCGCGCATCGCATAACGGCT+TGG - chr2_4:7871168-7871187 None:intergenic 60.0%
! TCTTCGACGGTGTCAACGCC+GGG - chr2_4:7871232-7871251 None:intergenic 60.0%
TGAGAAGCTCGACGGGGACT+TGG - chr2_4:7871297-7871316 None:intergenic 60.0%
ACGGACTTCGCTGACGACAG+AGG - chr2_4:7871407-7871426 None:intergenic 60.0%
! AGCAGTGCGCTGTTTCCGCT+TGG + chr2_4:7871497-7871516 Msa0312690:CDS 60.0%
! GCGCTGTTTCCGCTTGGAAG+AGG + chr2_4:7871503-7871522 Msa0312690:CDS 60.0%
! TTGTTGTGGTTCGGCGGCCA+TGG - chr2_4:7870932-7870951 None:intergenic 60.0%
TCGCGCATCGCATAACGGCT+TGG - chr2_4:7871168-7871187 None:intergenic 60.0%
! TCTTCGACGGTGTCAACGCC+GGG - chr2_4:7871232-7871251 None:intergenic 60.0%
TGAGAAGCTCGACGGGGACT+TGG - chr2_4:7871297-7871316 None:intergenic 60.0%
ACGGACTTCGCTGACGACAG+AGG - chr2_4:7871407-7871426 None:intergenic 60.0%
! AGCAGTGCGCTGTTTCCGCT+TGG + chr2_4:7871497-7871516 Msa0312690:CDS 60.0%
! GCGCTGTTTCCGCTTGGAAG+AGG + chr2_4:7871503-7871522 Msa0312690:CDS 60.0%
GGTTCGGCGGCCATGGTGAT+CGG - chr2_4:7870925-7870944 None:intergenic 65.0%
GAAGCTCGACGGGGACTTGG+TGG - chr2_4:7871294-7871313 None:intergenic 65.0%
GTCAGCGAAGTCCGTCGCAC+CGG + chr2_4:7871412-7871431 Msa0312690:CDS 65.0%
GGTTCGGCGGCCATGGTGAT+CGG - chr2_4:7870925-7870944 None:intergenic 65.0%
GAAGCTCGACGGGGACTTGG+TGG - chr2_4:7871294-7871313 None:intergenic 65.0%
GTCAGCGAAGTCCGTCGCAC+CGG + chr2_4:7871412-7871431 Msa0312690:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 7870705 7872017 7870705 ID=Msa0312690;Name=Msa0312690
chr2_4 mRNA 7870705 7872017 7870705 ID=Msa0312690-mRNA-1;Parent=Msa0312690;Name=Msa0312690-mRNA-1;_AED=0.00;_eAED=0.00;_QI=226|1|1|1|1|1|2|318|213
chr2_4 exon 7870705 7870960 7870705 ID=Msa0312690-mRNA-1:exon:3014;Parent=Msa0312690-mRNA-1
chr2_4 exon 7871088 7872017 7871088 ID=Msa0312690-mRNA-1:exon:3015;Parent=Msa0312690-mRNA-1
chr2_4 five_prime_UTR 7870705 7870930 7870705 ID=Msa0312690-mRNA-1:five_prime_utr;Parent=Msa0312690-mRNA-1
chr2_4 CDS 7870931 7870960 7870931 ID=Msa0312690-mRNA-1:cds;Parent=Msa0312690-mRNA-1
chr2_4 CDS 7871088 7871699 7871088 ID=Msa0312690-mRNA-1:cds;Parent=Msa0312690-mRNA-1
chr2_4 three_prime_UTR 7871700 7872017 7871700 ID=Msa0312690-mRNA-1:three_prime_utr;Parent=Msa0312690-mRNA-1
Gene Sequence

>Msa0312690

ATGGCCGCCGAACCACAACAACAACAATTGGTTGATGAGAACAATCGCGATCACACTGAAGAAGAGCAAGAATTGAAGTACCTTGAATTCGTGCAATTCGCAACGATCCAAGCCGTTATGCGATGCGCGATTCTCTATTCCTACGCTAAGGAACGTTCCGGTCCATTGAAACCCGGCGTTGACACCGTCGAAGAAGCCGTTAAAACTGTCGTTGGACCAGTCTACGACAAATTCCACCAAGTCCCCGTCGAGCTTCTCAAATACGTCGATCGCAAAGTCGACGAATCCGTTTCTGAGATCGATCGTCATGTTCCTACTAACGTCAAGAAGGTTTCAAATCAAGCTGCCTCTGTCGTCAGCGAAGTCCGTCGCACCGGTGTTGTTGAATCTGCTTCTGGACTTGCGAAAACTGTTTACTCGAAATATGAACCGAAAGCTGAGCAGTGCGCTGTTTCCGCTTGGAAGAGGTTGAATCAGCTTCCTTTGTTTCCTACTGTTGCAAACGTGGTTTTGCCAAAAGCTGCTTATTGTAGTGAGAAGTATAATGAAGCTGTTGTTTCGAGTGCGGAGAAAGGTTATAGAGTTTCTGCATATCTTCCATTGGTTCCTACTGAGAAGATTGCTAAGGTGTTTGCTGCTTAG

Protein sequence

>Msa0312690

MAAEPQQQQLVDENNRDHTEEEQELKYLEFVQFATIQAVMRCAILYSYAKERSGPLKPGVDTVEEAVKTVVGPVYDKFHQVPVELLKYVDRKVDESVSEIDRHVPTNVKKVSNQAASVVSEVRRTGVVESASGLAKTVYSKYEPKAEQCAVSAWKRLNQLPLFPTVANVVLPKAAYCSEKYNEAVVSSAEKGYRVSAYLPLVPTEKIAKVFAA*