AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0547460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0547460 MtrunA17_Chr4g0029701 98.753 882 11 0 1 882 1 882 0.0 1795
Msa0547460 MtrunA17_Chr2g0326271 70.838 895 238 7 2 882 3 888 0.0 1248
Msa0547460 MtrunA17_Chr8g0356491 34.234 111 68 2 351 461 299 404 6.71e-15 79.3
Msa0547460 MtrunA17_Chr5g0397151 30.556 108 72 1 351 458 302 406 3.71e-14 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0547460 AT5G60410.6 62.867 886 312 12 1 882 1 873 0.0 1124
Msa0547460 AT5G60410.1 62.867 886 312 12 1 882 1 873 0.0 1124
Msa0547460 AT5G60410.5 62.867 886 312 12 1 882 1 873 0.0 1123
Msa0547460 AT5G60410.2 62.867 886 312 12 1 882 1 873 0.0 1123
Msa0547460 AT5G60410.4 62.500 872 310 12 1 868 1 859 0.0 1098
Msa0547460 AT5G60410.3 62.069 841 302 12 1 837 1 828 0.0 1050

Find 307 sgRNAs with CRISPR-Local

Find 731 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGCAGCTTCTTTGCTTCT+TGG 0.130240 4_1:-40679623 Msa0547460:intron
TTTCCTAATGAAGATGATTT+TGG 0.169950 4_1:-40681549 Msa0547460:CDS
GTAGTTTAAACTTCCTAATT+TGG 0.175627 4_1:-40679158 Msa0547460:three_prime_UTR
GAAAGTGAACGTCTGGATTT+AGG 0.177524 4_1:-40682176 Msa0547460:CDS
TTGTCTCAGTTTCCAGAATA+TGG 0.204078 4_1:-40686369 Msa0547460:intron
AACCATCTGCAATATCATTT+TGG 0.221232 4_1:+40681649 None:intergenic
TTTCCCAACAGCATTCTTCT+TGG 0.230199 4_1:+40686345 None:intergenic
CTGGTTGTGGCCAACTTTAC+AGG 0.240074 4_1:+40684818 None:intergenic
GAACTTGTTTCAAGAACTTT+AGG 0.253657 4_1:-40679468 Msa0547460:three_prime_UTR
GCAAATACTTTGGCTGATTC+TGG 0.265030 4_1:-40681054 Msa0547460:intron
CGTCTGGATTTAGGGATTCT+TGG 0.266687 4_1:-40682167 Msa0547460:CDS
CAATTTCTAAATACAATATC+TGG 0.271050 4_1:+40679434 None:intergenic
TGATTAGGGTTTGGAGATTA+GGG 0.273354 4_1:+40688783 None:intergenic
TCCGAAGGCTAAACATTTAC+AGG 0.274958 4_1:+40679070 None:intergenic
TTTCAATCGCATCACTTCTA+TGG 0.279502 4_1:-40682349 Msa0547460:intron
CCAGATCCCAAAGCAGTTTC+GGG 0.280923 4_1:+40681375 None:intergenic
GTGATTAGGGTTTGGAGATT+AGG 0.283221 4_1:+40688782 None:intergenic
TTCAATTCTAGACGCACTTT+TGG 0.288718 4_1:+40678940 None:intergenic
ACCTTGCTCATCTGAGAGTA+TGG 0.290977 4_1:+40686974 None:intergenic
GCCAGATCCCAAAGCAGTTT+CGG 0.293735 4_1:+40681374 None:intergenic
ACTCCTTTGGAATTAAGTTT+AGG 0.304656 4_1:+40682846 None:intergenic
GGTGATGCTTCCACTCAAAA+TGG 0.305594 4_1:-40681117 Msa0547460:CDS
CTCTGGTGGAAGATATAAAT+TGG 0.307082 4_1:-40679356 Msa0547460:three_prime_UTR
TGCAGATAAAATATTCCTAA+TGG 0.309110 4_1:+40679122 None:intergenic
ATTCTTCTTGGCCCATATTC+TGG 0.317429 4_1:+40686357 None:intergenic
GAAGTGATGCGATTGAAATA+AGG 0.318290 4_1:+40682354 None:intergenic
CCCTCTTTGGCAAATGATAT+TGG 0.318406 4_1:-40679314 Msa0547460:three_prime_UTR
GAAAGAGCAGGTGGCAAAAT+TGG 0.320071 4_1:-40686326 Msa0547460:CDS
CTGGTTTAAAACTTGGCATT+AGG 0.321743 4_1:-40682037 Msa0547460:CDS
AGAATGAATCGGAGGTGATT+AGG 0.322444 4_1:+40688768 None:intergenic
GGAGGAATCGCAATGGGAAT+TGG 0.324383 4_1:-40682016 Msa0547460:CDS
ACTCAGGAAAATGCAGATAT+CGG 0.327194 4_1:-40686062 Msa0547460:intron
TATACAGACCTAGCAGTTAA+TGG 0.329641 4_1:-40684076 Msa0547460:intron
CCTCCGATTCATTCTTATTA+CGG 0.331934 4_1:-40688760 Msa0547460:intron
GAGGGGCAGGTGCAAGCATT+AGG 0.331985 4_1:+40679332 None:intergenic
ATAGGTCCGATTGCTTCTTC+TGG 0.332667 4_1:-40688919 Msa0547460:five_prime_UTR
CCCGAAACTGCTTTGGGATC+TGG 0.333745 4_1:-40681375 Msa0547460:CDS
CTTGTACCTTTCTATTGATT+CGG 0.341942 4_1:-40679510 Msa0547460:CDS
TGCTGATAGCGACAGTGATT+TGG 0.342121 4_1:-40682750 Msa0547460:CDS
CACGCGTCTGTCGTTGTGTT+GGG 0.342273 4_1:-40682793 Msa0547460:CDS
ATTCCAAAATCATCTTCATT+AGG 0.342360 4_1:+40681546 None:intergenic
GGTGGGGAAAATTTCCCATT+AGG 0.345190 4_1:-40679137 Msa0547460:three_prime_UTR
CTCGGTGGAAGTTCATGCTT+GGG 0.346082 4_1:-40681576 Msa0547460:CDS
GTCATTGCCTTCTGCATCTC+AGG 0.353133 4_1:-40681511 Msa0547460:CDS
ATTGGCTCCCGAAACTGCTT+TGG 0.354081 4_1:-40681382 Msa0547460:CDS
TGAACGACAAGGTTCCATTC+AGG 0.356491 4_1:-40684114 Msa0547460:CDS
GACAACCCATTGGCATTTGC+TGG 0.356540 4_1:-40681291 Msa0547460:CDS
ATCACCATCCCGACCACTTT+CGG 0.356985 4_1:+40681890 None:intergenic
AAAGTGAACGTCTGGATTTA+GGG 0.357301 4_1:-40682175 Msa0547460:CDS
TGCTTGCACCTGCCCCTCTT+TGG 0.359053 4_1:-40679327 Msa0547460:three_prime_UTR
AGTTCACAATAAAATTTATC+AGG 0.361374 4_1:+40685590 None:intergenic
GGTAGATAATTGAAGAATAA+AGG 0.361702 4_1:+40679226 None:intergenic
GAATGAATCGGAGGTGATTA+GGG 0.364415 4_1:+40688769 None:intergenic
TTAGTTTGCGGCAACACGTC+CGG 0.366631 4_1:+40688961 None:intergenic
GGCCAATGGCATCTTCCTAA+TGG 0.367292 4_1:-40682146 Msa0547460:CDS
AGTGTTAACCAGGGTGGTGG+TGG 0.369509 4_1:-40681861 Msa0547460:CDS
ACCTGTAAATGTTTAGCCTT+CGG 0.369833 4_1:-40679071 Msa0547460:three_prime_UTR
TTGGCTCCCGAAACTGCTTT+GGG 0.370189 4_1:-40681381 Msa0547460:CDS
ATTTAGAAATTGAAAGAAGT+TGG 0.375682 4_1:-40679423 Msa0547460:three_prime_UTR
AGTGATGAGGTGCAATTAAT+AGG 0.378729 4_1:+40681417 None:intergenic
CAGTATAAGCCTTCGTTGTC+CGG 0.381422 4_1:-40682708 Msa0547460:intron
TTGATTCGGAATCGGAATAA+AGG 0.381805 4_1:-40679496 Msa0547460:exon
CATTGTCTCTGGATGGGACT+TGG 0.386225 4_1:+40681079 None:intergenic
ATGCCTTCCATAGGTTTCTC+TGG 0.386479 4_1:+40685623 None:intergenic
TGTGGAAGTACATTGGAAAC+AGG 0.389365 4_1:-40685917 Msa0547460:CDS
AGTATTTGCGCCATTGTCTC+TGG 0.389636 4_1:+40681068 None:intergenic
GACGACTCAGCTGGTCTTGT+GGG 0.390350 4_1:+40681240 None:intergenic
GCCAATATCATTTGCCAAAG+AGG 0.391429 4_1:+40679313 None:intergenic
CTTACTCTCGGAGGTGGTGC+TGG 0.391540 4_1:-40681150 Msa0547460:CDS
GTTCTCTCCACGCACTGCAC+TGG 0.391843 4_1:+40684291 None:intergenic
AACACGTCCGGGTTAAGTTT+CGG 0.392113 4_1:+40688973 None:intergenic
CAGCACCACCTCCGAGAGTA+AGG 0.392682 4_1:+40681151 None:intergenic
ATACATACTGCCACGTTATG+AGG 0.394255 4_1:+40679387 None:intergenic
AACACTGAAGCAAGTAAAAC+AGG 0.397029 4_1:-40682081 Msa0547460:CDS
GGTCTATTAGTTGTTCGAAT+AGG 0.398032 4_1:+40683901 None:intergenic
ATGGTGTTTCCACTGAAGAT+TGG 0.399962 4_1:-40681179 Msa0547460:CDS
CAATAAAATTTATCAGGAAC+TGG 0.400321 4_1:+40685596 None:intergenic
AATGCAAGGTTTGAATCTTC+CGG 0.401374 4_1:+40682575 None:intergenic
TGTCTCAGTTTCCAGAATAT+GGG 0.403486 4_1:-40686368 Msa0547460:intron
AATCGGAGGTGATTAGGGTT+TGG 0.403557 4_1:+40688774 None:intergenic
CTGCATCAGAACCGAACAAT+TGG 0.403934 4_1:+40681475 None:intergenic
AGATTCTGATCTTCAGTGTA+TGG 0.405129 4_1:+40681597 None:intergenic
GAGACAACAAACACCTCTTC+TGG 0.405142 4_1:-40681978 Msa0547460:CDS
CGGCAGGGAGTATTGATTGA+TGG 0.410219 4_1:+40688825 None:intergenic
TGATGGCTCTTGGCGTGTTA+AGG 0.415872 4_1:-40682207 Msa0547460:CDS
TCAGTTAGGACTTTCAAAAC+AGG 0.417332 4_1:-40687234 Msa0547460:CDS
GAAGAGGTGTTTGTTGTCTC+GGG 0.417393 4_1:+40681981 None:intergenic
CAGAAGGCGCAGTTTGCAAC+AGG 0.417817 4_1:-40683624 Msa0547460:intron
AGAAGAGGTGTTTGTTGTCT+CGG 0.418486 4_1:+40681980 None:intergenic
AAGTGATGCGATTGAAATAA+GGG 0.420028 4_1:+40682355 None:intergenic
ATTGGAATAACAACTTGTTC+AGG 0.423238 4_1:+40681927 None:intergenic
TGAAGAAGACAATGACATAT+TGG 0.426237 4_1:-40681700 Msa0547460:CDS
GCAGATAAAATATTCCTAAT+GGG 0.426732 4_1:+40679123 None:intergenic
TCCCTTTGTACTTCTACTGC+TGG 0.427026 4_1:-40682122 Msa0547460:CDS
CCTTTCTATTGATTCGGAAT+CGG 0.428452 4_1:-40679504 Msa0547460:CDS
TGGTGGTTGTTATTTGCAAT+TGG 0.428837 4_1:+40681669 None:intergenic
GGCTCACCGTCAGACTCCTT+TGG 0.429043 4_1:+40682833 None:intergenic
GGTCCAGGATTCCAATTGTT+CGG 0.430991 4_1:-40681486 Msa0547460:CDS
TCGGAGCCACTGCTGCTCAT+TGG 0.433629 4_1:+40681909 None:intergenic
TTCTCTCCACGCACTGCACT+GGG 0.434383 4_1:+40684292 None:intergenic
GATCAAGCAAATGTCTCTAA+TGG 0.441265 4_1:-40681198 Msa0547460:CDS
AGGGGCAGGTGCAAGCATTA+GGG 0.443121 4_1:+40679333 None:intergenic
AAGGATGTGCTGACTCAGTT+AGG 0.444292 4_1:-40687248 Msa0547460:CDS
TCCTTTGTTACCTGTAAAGT+TGG 0.445895 4_1:-40684828 Msa0547460:CDS
GAGGAATCGCAATGGGAATT+GGG 0.446679 4_1:-40682015 Msa0547460:CDS
GGTTCAAGAATGAAGATTGC+CGG 0.447230 4_1:-40682594 Msa0547460:CDS
GCGAGCATCACATACTGTTA+AGG 0.451776 4_1:+40683673 None:intergenic
CTCTTACAAGATTCCTCTGC+TGG 0.453644 4_1:-40681348 Msa0547460:CDS
CGTATTGGATAATCGTTGAT+AGG 0.454426 4_1:-40688937 Msa0547460:five_prime_UTR
TGCTGACTTAAACGGTGGTT+TGG 0.454513 4_1:-40681316 Msa0547460:CDS
GGACCTGCTGGTTTAAAACT+TGG 0.454520 4_1:-40682044 Msa0547460:CDS
TCTGCATCTCAGGCTGGTCC+AGG 0.454585 4_1:-40681501 Msa0547460:CDS
TTGCCTTCTGCATCTCAGGC+TGG 0.454882 4_1:-40681507 Msa0547460:CDS
GAAGTACAAAGGGATCCATT+AGG 0.456957 4_1:+40682131 None:intergenic
GTTGAAATCACGCACGCGGC+AGG 0.457233 4_1:+40688809 None:intergenic
CGGACAGATGCTGACTTAAA+CGG 0.458317 4_1:-40681324 Msa0547460:CDS
GTGGAAATGGATTTGGTAGC+CGG 0.462405 4_1:-40688555 Msa0547460:exon
ATTGAAGAATAAAGGAATGA+TGG 0.462704 4_1:+40679234 None:intergenic
ATGCTTGATATTGAAGTTGA+CGG 0.463949 4_1:-40679269 Msa0547460:three_prime_UTR
CACATCTGCTCAGGTGGGTG+GGG 0.465487 4_1:-40681748 Msa0547460:CDS
ATGCAGAAGGCAATGACCAC+AGG 0.465646 4_1:+40681517 None:intergenic
AGTATGTATTGAGGCATCTC+TGG 0.469577 4_1:-40679373 Msa0547460:three_prime_UTR
TCACCCATCAGTCGGAATAC+TGG 0.470078 4_1:+40684799 None:intergenic
AGGTTCCATTCAGGATTCAA+TGG 0.470932 4_1:-40684105 Msa0547460:CDS
TGTAGTAGATTGAATTTGAA+AGG 0.471804 4_1:+40685961 None:intergenic
CAGTGGCTCCGAAAGTGGTC+GGG 0.478789 4_1:-40681898 Msa0547460:CDS
TGCAGAGGCCTCTGATGCAT+TGG 0.480231 4_1:-40681457 Msa0547460:CDS
AGACCTGGTTCTCAGTTGCT+TGG 0.480715 4_1:-40683883 Msa0547460:CDS
AGACAATGGCGCAAATACTT+TGG 0.481858 4_1:-40681064 Msa0547460:CDS
GGTTACTCCATGCCACCTCC+TGG 0.482671 4_1:-40681630 Msa0547460:CDS
CGTGCAAGAGCATCTTCAAA+AGG 0.484446 4_1:+40682812 None:intergenic
AAAGAGTGAAAGTGAACGTC+TGG 0.487302 4_1:-40682183 Msa0547460:CDS
TTTAAACTTCCTAATTTGGT+GGG 0.487863 4_1:-40679154 Msa0547460:three_prime_UTR
GCACGCGTCTGTCGTTGTGT+TGG 0.491160 4_1:-40682794 Msa0547460:CDS
CTCAGGAAAATGCAGATATC+GGG 0.492701 4_1:-40686061 Msa0547460:intron
ATCTACCGAGGGTATAGTGC+TGG 0.494005 4_1:-40679210 Msa0547460:three_prime_UTR
TTGCCGCAAACTAACCGTAT+TGG 0.495904 4_1:-40688952 Msa0547460:five_prime_UTR
AATTGGTGGATGACACATAT+AGG 0.496338 4_1:-40686309 Msa0547460:intron
TAGTTTGCGGCAACACGTCC+GGG 0.496662 4_1:+40688962 None:intergenic
ATCATTTGCCAAAGAGGGGC+AGG 0.497273 4_1:+40679319 None:intergenic
AAAACAAGAATTTGATGTTG+AGG 0.498260 4_1:-40684232 Msa0547460:intron
GTTTAAACTTCCTAATTTGG+TGG 0.500127 4_1:-40679155 Msa0547460:three_prime_UTR
AGGTGAAGCCTGATGGCTCT+TGG 0.500229 4_1:-40682217 Msa0547460:CDS
TGATCTAGCATCAAAGGGTC+AGG 0.502689 4_1:-40686032 Msa0547460:CDS
GTGTATGGGTCAACAATTCC+AGG 0.503406 4_1:+40681612 None:intergenic
TTTGCGCCATTGTCTCTGGA+TGG 0.506095 4_1:+40681072 None:intergenic
ATTGATTATTCTACTACCAA+TGG 0.508427 4_1:-40681834 Msa0547460:CDS
TAGAAATTGAAAGAAGTTGG+AGG 0.509262 4_1:-40679420 Msa0547460:three_prime_UTR
AACTGATGTGTTGCCACACT+TGG 0.509642 4_1:+40685657 None:intergenic
ATACCGTAATAAGAATGAAT+CGG 0.509830 4_1:+40688757 None:intergenic
GGAAACAGGGGATTTGATCA+AGG 0.511350 4_1:-40685903 Msa0547460:intron
GAACCGAACAATTGGAATCC+TGG 0.511458 4_1:+40681483 None:intergenic
GTATAGTTGGTCATTCAATC+TGG 0.511530 4_1:-40679180 Msa0547460:three_prime_UTR
GTGTTAACCAGGGTGGTGGT+GGG 0.511734 4_1:-40681860 Msa0547460:CDS
AGCCACTGATCTAGCATCAA+AGG 0.512610 4_1:-40686038 Msa0547460:CDS
ATATTGAAGTTGACGGGTTG+TGG 0.513525 4_1:-40679262 Msa0547460:three_prime_UTR
CCAATATCATTTGCCAAAGA+GGG 0.514702 4_1:+40679314 None:intergenic
AATAATGTTGATTTAGCTCG+TGG 0.515010 4_1:-40681786 Msa0547460:CDS
TCTCGGTGGAAGTTCATGCT+TGG 0.515187 4_1:-40681577 Msa0547460:CDS
ATCAATAGAAAGGTACAAGC+GGG 0.515538 4_1:+40679514 None:intergenic
TACTACCAATGGAATTGAGA+TGG 0.520220 4_1:-40681823 Msa0547460:CDS
AATTCTCTTGTTGAATCCGA+AGG 0.520603 4_1:+40679055 None:intergenic
GGAGCTAACGGTCGTGATGA+TGG 0.522397 4_1:-40683862 Msa0547460:CDS
TTGCGCCATTGTCTCTGGAT+GGG 0.523797 4_1:+40681073 None:intergenic
TTAACACGCCAAGAGCCATC+AGG 0.524906 4_1:+40682209 None:intergenic
ACACATCTGCTCAGGTGGGT+GGG 0.527629 4_1:-40681749 Msa0547460:CDS
TAAAATTTATCAGGAACTGG+TGG 0.527907 4_1:+40685599 None:intergenic
TCTCAGTTGCTTGGAGCTAA+CGG 0.528194 4_1:-40683874 Msa0547460:CDS
GTTTAAAACTTGGCATTAGG+AGG 0.528847 4_1:-40682034 Msa0547460:CDS
TCCAGCAGTAGAAGTACAAA+GGG 0.531371 4_1:+40682121 None:intergenic
AGCAGCAGTGGCTCCGAAAG+TGG 0.531558 4_1:-40681903 Msa0547460:CDS
AACAATTCCAGGAGGTGGCA+TGG 0.531645 4_1:+40681623 None:intergenic
GCATTAGGAGGAATCGCAAT+GGG 0.531717 4_1:-40682022 Msa0547460:CDS
TGCTTGATATTGAAGTTGAC+GGG 0.533300 4_1:-40679268 Msa0547460:three_prime_UTR
TGAAGATGTTACAGAGGTTG+AGG 0.533950 4_1:-40682237 Msa0547460:CDS
ACCACCACCCTGGTTAACAC+TGG 0.535166 4_1:+40681863 None:intergenic
ATTCAAACCTTGCATTCACA+TGG 0.535289 4_1:-40682568 Msa0547460:CDS
TGAAAGTACCATTAACTGCT+AGG 0.535333 4_1:+40684068 None:intergenic
AACACATCTGCTCAGGTGGG+TGG 0.535405 4_1:-40681750 Msa0547460:CDS
CATCTCCAGCAAATGCCAAT+GGG 0.537152 4_1:+40681286 None:intergenic
ATTTAGGGATTCTTGGCCAA+TGG 0.537251 4_1:-40682160 Msa0547460:CDS
TTCAAAACAGGGAAAGAAGC+AGG 0.537787 4_1:-40687222 Msa0547460:intron
CCGATTCCGAATCAATAGAA+AGG 0.537993 4_1:+40679504 None:intergenic
TATTATTCCAGAGAAACCTA+TGG 0.538683 4_1:-40685630 Msa0547460:CDS
GCATAACACATCTGCTCAGG+TGG 0.539010 4_1:-40681754 Msa0547460:CDS
AATGAATCAACGGTCAAGAA+AGG 0.539654 4_1:-40682517 Msa0547460:intron
GGATTTGGTAGCCGGTATCA+AGG 0.542036 4_1:-40688547 Msa0547460:intron
ATCAGTCGGAATACTGGTTG+TGG 0.542117 4_1:+40684805 None:intergenic
TGATGATCCCAGTGTTAACC+AGG 0.542672 4_1:-40681871 Msa0547460:CDS
TTGAAATCACGCACGCGGCA+GGG 0.544035 4_1:+40688810 None:intergenic
GCTCCAAGCAACTGAGAACC+AGG 0.545103 4_1:+40683880 None:intergenic
GGTGGTGCTGGCGGTAGTAA+TGG 0.547848 4_1:-40681138 Msa0547460:CDS
TATCCAATACGGTTAGTTTG+CGG 0.549016 4_1:+40688949 None:intergenic
TTAAACTTCCTAATTTGGTG+GGG 0.549491 4_1:-40679153 Msa0547460:three_prime_UTR
TACGCATAACACATCTGCTC+AGG 0.550755 4_1:-40681757 Msa0547460:CDS
AGAGCAAGTAGACCAAGGTC+AGG 0.551131 4_1:-40679578 Msa0547460:CDS
TAGCGACAGTGATTTGGAAG+TGG 0.551318 4_1:-40682744 Msa0547460:CDS
TGGTTGTTATTTGCAATTGG+AGG 0.553691 4_1:+40681672 None:intergenic
ACAACCAGTATTCCGACTGA+TGG 0.554333 4_1:-40684803 Msa0547460:CDS
ATCACTGAACGGTTATGCAT+TGG 0.555537 4_1:-40681400 Msa0547460:CDS
TGGAGAAACAAGAATCTTTG+CGG 0.556791 4_1:+40679291 None:intergenic
ACTGGTGGGATGCCTTCCAT+AGG 0.557028 4_1:+40685614 None:intergenic
TCATCTCCAGCAAATGCCAA+TGG 0.557087 4_1:+40681285 None:intergenic
TGGGCCAAGAAGAATGCTGT+TGG 0.557207 4_1:-40686349 Msa0547460:CDS
GCCACTGATCTAGCATCAAA+GGG 0.557914 4_1:-40686037 Msa0547460:CDS
CCCAGTGTTAACCAGGGTGG+TGG 0.558647 4_1:-40681864 Msa0547460:CDS
GATCCTAAACTTAATTCCAA+AGG 0.559168 4_1:-40682849 Msa0547460:CDS
GCAGTGGCTCCGAAAGTGGT+CGG 0.559727 4_1:-40681899 Msa0547460:CDS
GGGCCAAGAAGAATGCTGTT+GGG 0.560934 4_1:-40686348 Msa0547460:CDS
TTCTGTAGGATCTCGTCGAT+CGG 0.560941 4_1:-40687004 Msa0547460:intron
CACCAAAATGATATTGCAGA+TGG 0.562331 4_1:-40681651 Msa0547460:CDS
CCACCACCCTGGTTAACACT+GGG 0.563823 4_1:+40681864 None:intergenic
ACAGATGCTGACTTAAACGG+TGG 0.564719 4_1:-40681321 Msa0547460:CDS
TTCTGGTCATATATTAAGAG+AGG 0.564933 4_1:-40681961 Msa0547460:CDS
AGAATCCATCTCAATTCCAT+TGG 0.565368 4_1:+40681818 None:intergenic
GGGTCAACAATTCCAGGAGG+TGG 0.565780 4_1:+40681618 None:intergenic
ACGCGTCTGTCGTTGTGTTG+GGG 0.565862 4_1:-40682792 Msa0547460:CDS
AGACGACTCAGCTGGTCTTG+TGG 0.566685 4_1:+40681239 None:intergenic
GGCTCCGAAAGTGGTCGGGA+TGG 0.567316 4_1:-40681894 Msa0547460:CDS
AGAGCAGGTGGCAAAATTGG+TGG 0.568651 4_1:-40686323 Msa0547460:CDS
GATTCTGATCTTCAGTGTAT+GGG 0.568709 4_1:+40681598 None:intergenic
ATGATGATATACCTTGATAC+CGG 0.569499 4_1:+40688536 None:intergenic
TGTGGCCATTGAATCCTGAA+TGG 0.572530 4_1:+40684100 None:intergenic
CTGTCTCTGTGGAAGTACAT+TGG 0.572912 4_1:-40685924 Msa0547460:CDS
GTCAACTTCAATATCAAGCA+TGG 0.573150 4_1:+40679271 None:intergenic
CTCCACGCACTGCACTGGGT+TGG 0.574223 4_1:+40684296 None:intergenic
TATTCTTCAATTATCTACCG+AGG 0.574617 4_1:-40679222 Msa0547460:three_prime_UTR
CTCCAGCAGTAGAAGTACAA+AGG 0.578719 4_1:+40682120 None:intergenic
ACCCTTTGATGCTAGATCAG+TGG 0.579842 4_1:+40686036 None:intergenic
ATTCTTCAATTATCTACCGA+GGG 0.581186 4_1:-40679221 Msa0547460:three_prime_UTR
TTTCCGTATAAAAGAGCTCA+AGG 0.582643 4_1:-40687267 Msa0547460:CDS
TTCTGCATAGACGACTCAGC+TGG 0.582789 4_1:+40681231 None:intergenic
TACACTGAAGATCAGAATCT+CGG 0.583134 4_1:-40681594 Msa0547460:CDS
TGGTTTGGTTGACAACCCAT+TGG 0.583485 4_1:-40681301 Msa0547460:CDS
CAAATGAACCAATGCATCAG+AGG 0.583738 4_1:+40681449 None:intergenic
TAGGGGTTCGAATTGTCAGA+AGG 0.586441 4_1:-40683640 Msa0547460:CDS
ATCCATTAGGAAGATGCCAT+TGG 0.587077 4_1:+40682144 None:intergenic
ATGTATTGAGGCATCTCTGG+TGG 0.587373 4_1:-40679370 Msa0547460:three_prime_UTR
CTATCAACGATTATCCAATA+CGG 0.588642 4_1:+40688938 None:intergenic
AAACAACCCATGTGAATGCA+AGG 0.588755 4_1:+40682561 None:intergenic
GTCAGATAGTAGTAATGTGA+AGG 0.588763 4_1:-40686005 Msa0547460:CDS
GAGGTTGAGGTGAAGCCTGA+TGG 0.589171 4_1:-40682224 Msa0547460:CDS
TCTTAATATATGACCAGAAG+AGG 0.589965 4_1:+40681965 None:intergenic
TATTACCATTTATAGATGAG+TGG 0.593609 4_1:-40682615 Msa0547460:intron
GATTGGACATCCCTTACTCT+CGG 0.594442 4_1:-40681162 Msa0547460:CDS
GAATGCTGTTGGGAAAGAGC+AGG 0.595394 4_1:-40686338 Msa0547460:CDS
TGCATAACCGTTCAGTGATG+AGG 0.596581 4_1:+40681404 None:intergenic
TCAACTCACAAGAGCAGACA+AGG 0.599982 4_1:-40684265 Msa0547460:CDS
GTTATTCCAATGAGCAGCAG+TGG 0.601585 4_1:-40681915 Msa0547460:CDS
ATTGTTCGGTTCTGATGCAG+AGG 0.604658 4_1:-40681472 Msa0547460:CDS
AAAATTTATCAGGAACTGGT+GGG 0.607402 4_1:+40685600 None:intergenic
GTGAAAGGACTACCTGACCT+TGG 0.608339 4_1:+40679566 None:intergenic
AAGGGATGTCCAATCTTCAG+TGG 0.608756 4_1:+40681170 None:intergenic
CAACCAGTATTCCGACTGAT+GGG 0.609101 4_1:-40684802 Msa0547460:intron
ATCACGCCGCATACAAAAGA+CGG 0.610322 4_1:-40683710 Msa0547460:CDS
AGCATCTGTCCGTCCAGCAG+AGG 0.610516 4_1:+40681335 None:intergenic
TGGCACACCGAAACTTAACC+CGG 0.611981 4_1:-40688980 Msa0547460:five_prime_UTR
CAGTTAGGACTTTCAAAACA+GGG 0.613916 4_1:-40687233 Msa0547460:CDS
ACTCTCGGAGGTGGTGCTGG+CGG 0.614564 4_1:-40681147 Msa0547460:CDS
GGCATTAGGAGGAATCGCAA+TGG 0.614693 4_1:-40682023 Msa0547460:CDS
ACATCCCTTACTCTCGGAGG+TGG 0.615368 4_1:-40681156 Msa0547460:CDS
CGCGTCTGTCGTTGTGTTGG+GGG 0.617331 4_1:-40682791 Msa0547460:CDS
TGCTGTTGGGAAAGAGCAGG+TGG 0.617341 4_1:-40686335 Msa0547460:CDS
TACAAGATTCCTCTGCTGGA+CGG 0.618020 4_1:-40681344 Msa0547460:CDS
TTCAAACCTTGCATTCACAT+GGG 0.620953 4_1:-40682567 Msa0547460:CDS
GTGGAAGTACATTGGAAACA+GGG 0.621176 4_1:-40685916 Msa0547460:CDS
TGCAGAAGGCAATGACCACA+GGG 0.622669 4_1:+40681518 None:intergenic
ACAAAGATTCGCTGTCTCTG+TGG 0.626008 4_1:-40685935 Msa0547460:CDS
CAATATGCCCACCACCACCC+TGG 0.626286 4_1:+40681853 None:intergenic
TAAAACCAGCACTATACCCT+CGG 0.626339 4_1:+40679205 None:intergenic
TCGGTGGAAGTTCATGCTTG+GGG 0.626592 4_1:-40681575 Msa0547460:CDS
TACCAACCCAGTGCAGTGCG+TGG 0.627424 4_1:-40684298 Msa0547460:CDS
AGCACCACCTCCGAGAGTAA+GGG 0.628927 4_1:+40681152 None:intergenic
TAACGTGGCAGTATGTATTG+AGG 0.629919 4_1:-40679382 Msa0547460:three_prime_UTR
TTAATTCCAAAGGAGTCTGA+CGG 0.634359 4_1:-40682839 Msa0547460:CDS
CAAGTCCCATCCAGAGACAA+TGG 0.637497 4_1:-40681078 Msa0547460:CDS
GGACCAGCCTGAGATGCAGA+AGG 0.640187 4_1:+40681504 None:intergenic
CCATGTACTCACCCATCAGT+CGG 0.640779 4_1:+40684791 None:intergenic
GCCAACTTTACAGGTAACAA+AGG 0.641343 4_1:+40684827 None:intergenic
AATTGCACCTCATCACTGAA+CGG 0.645687 4_1:-40681411 Msa0547460:CDS
ATTCCAGAGAAACCTATGGA+AGG 0.646238 4_1:-40685626 Msa0547460:CDS
GATCAGATTGGTTACTACTG+CGG 0.646694 4_1:-40688650 Msa0547460:intron
CTGAAGCAAGTAAAACAGGA+AGG 0.648396 4_1:-40682077 Msa0547460:CDS
CAATATCATTTGCCAAAGAG+GGG 0.648455 4_1:+40679315 None:intergenic
TCCATACTCTCAGATGAGCA+AGG 0.650138 4_1:-40686975 Msa0547460:intron
GTGTATGCTTCTGAACGACA+AGG 0.650450 4_1:-40684125 Msa0547460:CDS
CCGTAATAAGAATGAATCGG+AGG 0.655984 4_1:+40688760 None:intergenic
TTGCGGTGAAGATGTTACAG+AGG 0.656546 4_1:-40682243 Msa0547460:CDS
ACGACTCAGCTGGTCTTGTG+GGG 0.660023 4_1:+40681241 None:intergenic
AATCAATAGAAAGGTACAAG+CGG 0.660315 4_1:+40679513 None:intergenic
CATAACACATCTGCTCAGGT+GGG 0.660429 4_1:-40681753 Msa0547460:CDS
ATTCGAACAACTAATAGACC+TGG 0.670126 4_1:-40683898 Msa0547460:CDS
CTGGTACAGATGATTAATTG+CGG 0.671508 4_1:-40682260 Msa0547460:intron
CACAAGAGCAGACAAGGACA+TGG 0.672436 4_1:-40684259 Msa0547460:CDS
CTGACAGAGCAAGTAGACCA+AGG 0.682371 4_1:-40679583 Msa0547460:CDS
TGGAAGTACATTGGAAACAG+GGG 0.683506 4_1:-40685915 Msa0547460:CDS
AAAGCCTTACCGGACAACGA+AGG 0.691607 4_1:+40682699 None:intergenic
ACTGAAGATCAGAATCTCGG+TGG 0.691772 4_1:-40681591 Msa0547460:CDS
GTTTGTTGAAATCACGCACG+CGG 0.693079 4_1:+40688805 None:intergenic
TCAATAGAAAGGTACAAGCG+GGG 0.705417 4_1:+40679515 None:intergenic
AGAAGCGAATAATCAACACA+TGG 0.712746 4_1:+40688622 None:intergenic
ATGATGCAAGATGCCAAGTG+TGG 0.722474 4_1:-40685670 Msa0547460:CDS
ACTGCTAGGTCTGTATACTG+TGG 0.722592 4_1:+40684082 None:intergenic
TGGACATCCCTTACTCTCGG+AGG 0.740031 4_1:-40681159 Msa0547460:CDS
GATGATCCCAGTGTTAACCA+GGG 0.753201 4_1:-40681870 Msa0547460:CDS
TATGGGTCAACAATTCCAGG+AGG 0.765207 4_1:+40681615 None:intergenic
GATCCCAGTGTTAACCAGGG+TGG 0.772459 4_1:-40681867 Msa0547460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGATATTGAATTTATA+TGG - chr4_1:40679538-40679557 Msa0547460:CDS 10.0%
!! AAAAATGCTAAATAATATAA+AGG + chr4_1:40682991-40683010 None:intergenic 10.0%
!!! TTTTCTTTTCTTTTATTTAA+TGG - chr4_1:40683441-40683460 Msa0547460:intron 10.0%
!!! TTTCTTTTCTTTTATTTAAT+GGG - chr4_1:40683442-40683461 Msa0547460:intron 10.0%
!! AAATAAAAGTTCAATTTAAA+AGG - chr4_1:40687842-40687861 Msa0547460:intron 10.0%
!!! AATTTTTTTATTTTGTCTAG+TGG - chr4_1:40679767-40679786 Msa0547460:intron 15.0%
!! ATTTAACTATTGTTTAGTTA+AGG - chr4_1:40680263-40680282 Msa0547460:intron 15.0%
!! GAAAAGAAATATAAGTAAAA+TGG - chr4_1:40680449-40680468 Msa0547460:intron 15.0%
!! TATTAAATTCAGGATTAAAA+AGG + chr4_1:40680816-40680835 None:intergenic 15.0%
!!! TTTTAACAAAACATGAAAAT+AGG + chr4_1:40682874-40682893 None:intergenic 15.0%
!!! TTTCATGTTTTGTTAAAAAA+TGG - chr4_1:40682876-40682895 Msa0547460:intron 15.0%
!!! ATTATTTTACTACAAAACAA+AGG + chr4_1:40683187-40683206 None:intergenic 15.0%
!!! TAATTGTCTTGTTTAATATA+TGG - chr4_1:40683203-40683222 Msa0547460:intron 15.0%
!! CTTATACAAGTTAAAATAAA+TGG + chr4_1:40684088-40684107 None:intergenic 15.0%
!!! TTTTAAATTTCAAACCAATA+GGG + chr4_1:40684461-40684480 None:intergenic 15.0%
!!! TTTTTAAATTTCAAACCAAT+AGG + chr4_1:40684462-40684481 None:intergenic 15.0%
!! AAGATTTATGAACATATAAA+TGG + chr4_1:40685601-40685620 None:intergenic 15.0%
!! TATTTGAAGACTAATTTATT+TGG - chr4_1:40685622-40685641 Msa0547460:CDS 15.0%
!! TTGAAATCATACAATTTAAT+GGG + chr4_1:40687152-40687171 None:intergenic 15.0%
!!! TTTGAAATCATACAATTTAA+TGG + chr4_1:40687153-40687172 None:intergenic 15.0%
!!! CAATTTATTTTTCATTTGAT+GGG - chr4_1:40687676-40687695 Msa0547460:intron 15.0%
!!! TTGAACTTTTATTTAAAGTT+AGG + chr4_1:40687836-40687855 None:intergenic 15.0%
!! TAACTAAGTAAACAAAATAT+GGG + chr4_1:40688062-40688081 None:intergenic 15.0%
!!! TTTTGATATTTTGAAAAATG+TGG - chr4_1:40688099-40688118 Msa0547460:intron 15.0%
!!! AAATAGTTTTTCTATTTCAA+GGG - chr4_1:40688878-40688897 Msa0547460:five_prime_UTR 15.0%
!! AGAAAAAATTAAGCTAGAAT+TGG + chr4_1:40679186-40679205 None:intergenic 20.0%
!! TCAAATCAAATGAAAATGAA+TGG + chr4_1:40679226-40679245 None:intergenic 20.0%
!!! TCATTAATTTTTGCTTATGT+TGG - chr4_1:40679419-40679438 Msa0547460:three_prime_UTR 20.0%
!! ATTTAAGAACATAAACTACA+AGG + chr4_1:40679910-40679929 None:intergenic 20.0%
!! GAAGAGGATTAATATTTAAA+AGG - chr4_1:40679973-40679992 Msa0547460:intron 20.0%
!! CATAATAAAATGAACTTGAA+AGG + chr4_1:40680406-40680425 None:intergenic 20.0%
!!! AATTTCAGTTGTATTTTTTC+TGG - chr4_1:40680491-40680510 Msa0547460:intron 20.0%
!! TTATGAATCATTTACTGAAT+AGG - chr4_1:40681091-40681110 Msa0547460:CDS 20.0%
!! CTATTATTGCTAATTTCAAT+AGG + chr4_1:40681153-40681172 None:intergenic 20.0%
!! GAGAGAGAAAAAAAAAATAA+GGG + chr4_1:40681228-40681247 None:intergenic 20.0%
!! AGAGAGAGAAAAAAAAAATA+AGG + chr4_1:40681229-40681248 None:intergenic 20.0%
!!! TTAATTGTGATTTTATCATG+TGG - chr4_1:40681459-40681478 Msa0547460:CDS 20.0%
!!! TAATTGTGATTTTATCATGT+GGG - chr4_1:40681460-40681479 Msa0547460:CDS 20.0%
!! AACTCATAACTTAAAATGAT+TGG - chr4_1:40681694-40681713 Msa0547460:CDS 20.0%
!! AGTTCACAATAAAATTTATC+AGG + chr4_1:40682322-40682341 None:intergenic 20.0%
!! AAGGAAAAAATTCAAAGAAA+GGG + chr4_1:40682381-40682400 None:intergenic 20.0%
!!! TCTGTTTTCAAATATTTGTA+TGG - chr4_1:40682920-40682939 Msa0547460:intron 20.0%
!!! CTGTTTTCAAATATTTGTAT+GGG - chr4_1:40682921-40682940 Msa0547460:intron 20.0%
!! AACAGAAAATATGAAATTAG+TGG + chr4_1:40683024-40683043 None:intergenic 20.0%
!! TATTGAAAATTAGACATAGT+TGG - chr4_1:40683149-40683168 Msa0547460:intron 20.0%
!! AACAAAATATAAGTGGTAAA+TGG + chr4_1:40683353-40683372 None:intergenic 20.0%
!! TTCAATCAACAAAATATAAG+TGG + chr4_1:40683360-40683379 None:intergenic 20.0%
!!! TTTTGTTGATTGAAATTCTA+TGG - chr4_1:40683366-40683385 Msa0547460:intron 20.0%
!! GTAATAGAAAACTGATTAAT+AGG + chr4_1:40685280-40685299 None:intergenic 20.0%
!! AAACAATTAAATTCTTCAGA+AGG + chr4_1:40685475-40685494 None:intergenic 20.0%
!! AGAACATTTATGAATTAGAA+GGG + chr4_1:40686896-40686915 None:intergenic 20.0%
!! AAGAACATTTATGAATTAGA+AGG + chr4_1:40686897-40686916 None:intergenic 20.0%
!! TATAATATAGCCAAATAGAT+TGG + chr4_1:40687360-40687379 None:intergenic 20.0%
!! ATGAAAAATAAATTGCAACT+TGG + chr4_1:40687671-40687690 None:intergenic 20.0%
!!! GCAATTTATTTTTCATTTGA+TGG - chr4_1:40687675-40687694 Msa0547460:intron 20.0%
!!! GTTCTTAATTCTTTGATTTT+TGG - chr4_1:40687804-40687823 Msa0547460:intron 20.0%
!! CTAACTAAGTAAACAAAATA+TGG + chr4_1:40688063-40688082 None:intergenic 20.0%
!! CAATTTCTAAATACAATATC+TGG + chr4_1:40688478-40688497 None:intergenic 20.0%
!! ATTTAGAAATTGAAAGAAGT+TGG - chr4_1:40688486-40688505 Msa0547460:intron 20.0%
!!! GAATATTTTATCTGCATTTT+TGG - chr4_1:40688794-40688813 Msa0547460:five_prime_UTR 20.0%
!!! CAAATAGTTTTTCTATTTCA+AGG - chr4_1:40688877-40688896 Msa0547460:five_prime_UTR 20.0%
!! TTAAATCCAGATGTAAAAAT+GGG + chr4_1:40688924-40688943 None:intergenic 20.0%
!! TTTAAATCCAGATGTAAAAA+TGG + chr4_1:40688925-40688944 None:intergenic 20.0%
! ATACCGTAATAAGAATGAAT+CGG + chr4_1:40679155-40679174 None:intergenic 25.0%
!!! TTCATTTGATTTGATCAGAT+TGG - chr4_1:40679247-40679266 Msa0547460:three_prime_UTR 25.0%
! TATTGAATTTATATGGACAG+TGG - chr4_1:40679545-40679564 Msa0547460:CDS 25.0%
!!! GTGTTATATAGTTTTAGTCA+TGG - chr4_1:40679635-40679654 Msa0547460:intron 25.0%
! TCTTATTATTCTTAGCTGTT+GGG + chr4_1:40679831-40679850 None:intergenic 25.0%
! ATCTTATTATTCTTAGCTGT+TGG + chr4_1:40679832-40679851 None:intergenic 25.0%
!!! AATTCACTACCAGTTTTATT+AGG + chr4_1:40680124-40680143 None:intergenic 25.0%
!!! CTGGTAGTGAATTATTTTAT+TGG - chr4_1:40680131-40680150 Msa0547460:intron 25.0%
!! ATTGATTTAAAAGACTGTCA+AGG + chr4_1:40680308-40680327 None:intergenic 25.0%
! TTATGCGGTGATATATTAAT+TGG - chr4_1:40680573-40680592 Msa0547460:intron 25.0%
! TATGCGGTGATATATTAATT+GGG - chr4_1:40680574-40680593 Msa0547460:intron 25.0%
!! GTTAATTTTTCCTATAAGAG+AGG + chr4_1:40680619-40680638 None:intergenic 25.0%
! ACAAATAACATTGACAGATT+TGG + chr4_1:40680732-40680751 None:intergenic 25.0%
!! CTGAATTTAATATGCTGTTT+CGG - chr4_1:40680824-40680843 Msa0547460:intron 25.0%
! TGATATTAATACCGATGTAT+TGG - chr4_1:40681032-40681051 Msa0547460:intron 25.0%
! TGCTAATTTCAATAGGATAA+TGG + chr4_1:40681146-40681165 None:intergenic 25.0%
!! GTTTTTGTCATAATTGTCTT+TGG - chr4_1:40681172-40681191 Msa0547460:CDS 25.0%
! TAAACTTTAGATGGAATCTT+AGG - chr4_1:40681196-40681215 Msa0547460:CDS 25.0%
! TTTCTAAGTTTACATGAGAA+AGG + chr4_1:40681510-40681529 None:intergenic 25.0%
! CAAAAACTCCAATAAGAAAT+AGG + chr4_1:40681815-40681834 None:intergenic 25.0%
!!! TTTGTATTTTGCTTTTACTC+AGG - chr4_1:40681831-40681850 Msa0547460:CDS 25.0%
! TGTAGTAGATTGAATTTGAA+AGG + chr4_1:40681951-40681970 None:intergenic 25.0%
! AATTATGTGTGATCACAAAA+AGG + chr4_1:40682145-40682164 None:intergenic 25.0%
! CAATAAAATTTATCAGGAAC+TGG + chr4_1:40682316-40682335 None:intergenic 25.0%
! GAAGGAAAAAATTCAAAGAA+AGG + chr4_1:40682382-40682401 None:intergenic 25.0%
!!! TCTTTGAATTTTTTCCTTCA+TGG - chr4_1:40682383-40682402 Msa0547460:CDS 25.0%
!!! AATTTTTTCCTTCATGGATT+AGG - chr4_1:40682389-40682408 Msa0547460:CDS 25.0%
!!! ATTTTTTCCTTCATGGATTA+GGG - chr4_1:40682390-40682409 Msa0547460:CDS 25.0%
! AAAATTATAAGCTTGCAACA+TGG + chr4_1:40682590-40682609 None:intergenic 25.0%
!! ATAACTGTGTTATTGTAGAA+GGG + chr4_1:40682689-40682708 None:intergenic 25.0%
!! TATAACTGTGTTATTGTAGA+AGG + chr4_1:40682690-40682709 None:intergenic 25.0%
! TACTTATTGCGGTAAATTTA+TGG - chr4_1:40682737-40682756 Msa0547460:CDS 25.0%
!! TCTTTTGTTCTTTGTATTCT+TGG - chr4_1:40682814-40682833 Msa0547460:CDS 25.0%
!! CTTTTGTTCTTTGTATTCTT+GGG - chr4_1:40682815-40682834 Msa0547460:CDS 25.0%
!! TTTTGTTCTTTGTATTCTTG+GGG - chr4_1:40682816-40682835 Msa0547460:CDS 25.0%
! ATCTTTGATAAAATAACCAG+AGG + chr4_1:40682963-40682982 None:intergenic 25.0%
!! TTCTCTCTTTTATAGGTTTT+GGG - chr4_1:40683045-40683064 Msa0547460:intron 25.0%
!! TGACTTGAATACTACATTTT+GGG - chr4_1:40683234-40683253 Msa0547460:intron 25.0%
! GTCATATTGCTAATAATTAC+TGG - chr4_1:40683263-40683282 Msa0547460:intron 25.0%
!!! TGGTTGAATTTTCTTTTTTG+AGG - chr4_1:40683389-40683408 Msa0547460:intron 25.0%
!!! TTCTTTTATTTAATGGGTCT+AGG - chr4_1:40683448-40683467 Msa0547460:intron 25.0%
! AAAATACTGCAATGAAGATT+AGG + chr4_1:40683550-40683569 None:intergenic 25.0%
! TTCAAACAGGAATATGATTT+AGG + chr4_1:40683583-40683602 None:intergenic 25.0%
! AAAACAAGAATTTGATGTTG+AGG - chr4_1:40683677-40683696 Msa0547460:CDS 25.0%
! TATTTCGAAAAATTACGTGT+AGG - chr4_1:40683757-40683776 Msa0547460:intron 25.0%
! ACAAATTATAATGCAATCAC+AGG + chr4_1:40683962-40683981 None:intergenic 25.0%
! TTCTTATTAACTTCGACTAT+AGG - chr4_1:40683981-40684000 Msa0547460:intron 25.0%
! AAATCGTATGTCTTAGAATT+AGG + chr4_1:40684616-40684635 None:intergenic 25.0%
! ATTTAAAGAAACCAACCAAT+AGG + chr4_1:40684755-40684774 None:intergenic 25.0%
! AAATCGTATGTCTTAGAATT+AGG + chr4_1:40684616-40684635 None:intergenic 25.0%
! TATTACCATTTATAGATGAG+TGG - chr4_1:40685294-40685313 Msa0547460:intron 25.0%
!!! TTTTGATCTTGATGTTTTTG+TGG - chr4_1:40685368-40685387 Msa0547460:intron 25.0%
!! TTTTTGTGGAAATGAATCAA+CGG - chr4_1:40685382-40685401 Msa0547460:intron 25.0%
!!! GACTAATTTATTTGGTTTTC+TGG - chr4_1:40685630-40685649 Msa0547460:CDS 25.0%
!! CATATATTAAGAGAGGTTTT+TGG - chr4_1:40685955-40685974 Msa0547460:CDS 25.0%
! ATTGATTATTCTACTACCAA+TGG - chr4_1:40686075-40686094 Msa0547460:intron 25.0%
!! TTTCCTAATGAAGATGATTT+TGG - chr4_1:40686360-40686379 Msa0547460:CDS 25.0%
! ATTCCAAAATCATCTTCATT+AGG + chr4_1:40686366-40686385 None:intergenic 25.0%
!!! AAGTGTATTTTAACAACAAC+AGG + chr4_1:40687022-40687041 None:intergenic 25.0%
! TTGATTTCATATTGATCTAG+TGG + chr4_1:40687176-40687195 None:intergenic 25.0%
! CATGAAAGAGTAAAAATCTT+CGG + chr4_1:40687215-40687234 None:intergenic 25.0%
!! GAAGATTTTTACTCTTTCAT+GGG - chr4_1:40687214-40687233 Msa0547460:intron 25.0%
!! AAGATTTTTACTCTTTCATG+GGG - chr4_1:40687215-40687234 Msa0547460:intron 25.0%
!! TTCAAACTCAATTTTTGAAC+AGG + chr4_1:40687256-40687275 None:intergenic 25.0%
! AACAATAATTGTCATGACAT+TGG - chr4_1:40687274-40687293 Msa0547460:CDS 25.0%
! ATGACATTGGATGATTAATT+GGG - chr4_1:40687287-40687306 Msa0547460:intron 25.0%
!!! ACTTAGTTAGAAAGCATTAA+TGG - chr4_1:40688073-40688092 Msa0547460:intron 25.0%
!!! TGATATTTTGAAAAATGTGG+AGG - chr4_1:40688102-40688121 Msa0547460:intron 25.0%
! AATTATCTGATCAAGAACAA+GGG + chr4_1:40688226-40688245 None:intergenic 25.0%
! ATTGAAGAATAAAGGAATGA+TGG + chr4_1:40688678-40688697 None:intergenic 25.0%
! GGTAGATAATTGAAGAATAA+AGG + chr4_1:40688686-40688705 None:intergenic 25.0%
! GTAGTTTAAACTTCCTAATT+TGG - chr4_1:40688751-40688770 Msa0547460:intron 25.0%
! TTTAAACTTCCTAATTTGGT+GGG - chr4_1:40688755-40688774 Msa0547460:intron 25.0%
! GCAGATAAAATATTCCTAAT+GGG + chr4_1:40688789-40688808 None:intergenic 25.0%
! TGCAGATAAAATATTCCTAA+TGG + chr4_1:40688790-40688809 None:intergenic 25.0%
CTATCAACGATTATCCAATA+CGG + chr4_1:40678974-40678993 None:intergenic 30.0%
AAAAAACCAGAAGAAGCAAT+CGG + chr4_1:40678999-40679018 None:intergenic 30.0%
!!! ATTGCTTCTTCTGGTTTTTT+GGG - chr4_1:40678999-40679018 Msa0547460:three_prime_UTR 30.0%
!!! TCAGTTTTTGGTCAATTCTT+AGG - chr4_1:40679327-40679346 Msa0547460:three_prime_UTR 30.0%
!! ATTCTTAGGTTTTGTGGAAA+TGG - chr4_1:40679341-40679360 Msa0547460:three_prime_UTR 30.0%
ATGATGATATACCTTGATAC+CGG + chr4_1:40679376-40679395 None:intergenic 30.0%
!!! TTTTTTAATGGCAAGCTATG+CGG - chr4_1:40679579-40679598 Msa0547460:CDS 30.0%
! TATATGCATTTTCGATTGGT+TGG - chr4_1:40679604-40679623 Msa0547460:CDS 30.0%
!! TTTCGATTGGTTGGATTTTT+AGG - chr4_1:40679613-40679632 Msa0547460:CDS 30.0%
!!! TAGTTTTAGTCATGGTCATT+TGG - chr4_1:40679643-40679662 Msa0547460:intron 30.0%
! ATATAGTTGGTTCACTGTTT+AGG - chr4_1:40679717-40679736 Msa0547460:intron 30.0%
ATGTTATATTAGTCCCTCAT+CGG - chr4_1:40679932-40679951 Msa0547460:intron 30.0%
GCATTTAAACAATAGAGAAG+AGG - chr4_1:40679957-40679976 Msa0547460:intron 30.0%
TGTAACCATTAACTAGACAT+GGG + chr4_1:40680073-40680092 None:intergenic 30.0%
TTGTAACCATTAACTAGACA+TGG + chr4_1:40680074-40680093 None:intergenic 30.0%
! GTTACAAACCAGTTTTACTA+CGG - chr4_1:40680087-40680106 Msa0547460:intron 30.0%
GTTCGTCATTTCTATGAATT+GGG - chr4_1:40680153-40680172 Msa0547460:intron 30.0%
!! TTGGAGGTACTTCTATAAAT+TGG + chr4_1:40680195-40680214 None:intergenic 30.0%
!! TTTATAGAAGTACCTCCAAT+TGG - chr4_1:40680196-40680215 Msa0547460:intron 30.0%
!! GTCAGTATTGAGTTTTTATG+CGG - chr4_1:40680558-40680577 Msa0547460:intron 30.0%
AATGAAGTCATTAGCATTCA+AGG + chr4_1:40680773-40680792 None:intergenic 30.0%
ATTAAAAAGGAAACAGCACA+TGG + chr4_1:40680803-40680822 None:intergenic 30.0%
CGAAACAGCATATTAAATTC+AGG + chr4_1:40680826-40680845 None:intergenic 30.0%
!! GTGTTTTTAATATGACGTCT+TGG - chr4_1:40680846-40680865 Msa0547460:intron 30.0%
GAGCAAGGTAAAATTATACA+CGG - chr4_1:40680949-40680968 Msa0547460:intron 30.0%
AGCAAGGTAAAATTATACAC+GGG - chr4_1:40680950-40680969 Msa0547460:intron 30.0%
AAGGATAGAATTAGACTCTA+TGG + chr4_1:40680981-40681000 None:intergenic 30.0%
TGTTGAAACTTCCAATACAT+CGG + chr4_1:40681046-40681065 None:intergenic 30.0%
GTCTTTGGTTAAACTTTAGA+TGG - chr4_1:40681187-40681206 Msa0547460:CDS 30.0%
GAAAAAAAAAATAAGGGCCT+TGG + chr4_1:40681222-40681241 None:intergenic 30.0%
AATTAACTACTCAACAAGGA+GGG + chr4_1:40681273-40681292 None:intergenic 30.0%
CTAGAATTAACTACTCAACA+AGG + chr4_1:40681277-40681296 None:intergenic 30.0%
ATGTATTCACAGAAATGATG+TGG - chr4_1:40681717-40681736 Msa0547460:CDS 30.0%
AACTCCAATAAGAAATAGGA+AGG + chr4_1:40681811-40681830 None:intergenic 30.0%
! ATATTTTTCTTCGTTCTCCA+TGG - chr4_1:40682040-40682059 Msa0547460:CDS 30.0%
! GCATATAATTTTATGGACCA+TGG + chr4_1:40682060-40682079 None:intergenic 30.0%
AGAAATATTGCATGTACAGT+GGG + chr4_1:40682083-40682102 None:intergenic 30.0%
AAGAAATATTGCATGTACAG+TGG + chr4_1:40682084-40682103 None:intergenic 30.0%
! GTGATCACACATAATTTTCA+TGG - chr4_1:40682149-40682168 Msa0547460:CDS 30.0%
!! GTTGCACATTTGATAACTTT+TGG - chr4_1:40682185-40682204 Msa0547460:CDS 30.0%
TATTATTCCAGAGAAACCTA+TGG - chr4_1:40682279-40682298 Msa0547460:intron 30.0%
AAAATTTATCAGGAACTGGT+GGG + chr4_1:40682312-40682331 None:intergenic 30.0%
TAAAATTTATCAGGAACTGG+TGG + chr4_1:40682313-40682332 None:intergenic 30.0%
TGTAATGTAGTATTCTCAGT+TGG - chr4_1:40682529-40682548 Msa0547460:CDS 30.0%
ACTAAAAATGGGTCACAATA+GGG + chr4_1:40682637-40682656 None:intergenic 30.0%
AACTAAAAATGGGTCACAAT+AGG + chr4_1:40682638-40682657 None:intergenic 30.0%
ATGTCTGCATATACTTATTG+CGG - chr4_1:40682726-40682745 Msa0547460:CDS 30.0%
AAATTTATGGCTCATGAAGT+TGG - chr4_1:40682750-40682769 Msa0547460:CDS 30.0%
AAACAATACAAAAGTTCCTC+TGG - chr4_1:40682944-40682963 Msa0547460:intron 30.0%
! TCTGTTGTTCTCTCTTTTAT+AGG - chr4_1:40683038-40683057 Msa0547460:intron 30.0%
! GTTCTCTCTTTTATAGGTTT+TGG - chr4_1:40683044-40683063 Msa0547460:intron 30.0%
!! CTGACTTGAATACTACATTT+TGG - chr4_1:40683233-40683252 Msa0547460:intron 30.0%
! GACTTGAATACTACATTTTG+GGG - chr4_1:40683235-40683254 Msa0547460:intron 30.0%
! ACTTGAATACTACATTTTGG+GGG - chr4_1:40683236-40683255 Msa0547460:intron 30.0%
GTCAAAAGTTAATCCAGTAA+AGG + chr4_1:40683304-40683323 None:intergenic 30.0%
! TGTTGATTGAAATTCTATGG+TGG - chr4_1:40683369-40683388 Msa0547460:intron 30.0%
AATCTTAATGTATTGTCCAG+AGG + chr4_1:40683423-40683442 None:intergenic 30.0%
CAAACGAAAGAAGAAAGATA+TGG + chr4_1:40683735-40683754 None:intergenic 30.0%
TGCAATCACAGGAAAATATT+TGG + chr4_1:40683951-40683970 None:intergenic 30.0%
AATAAATGGCAACTCACAAT+TGG + chr4_1:40684074-40684093 None:intergenic 30.0%
GTCTATAAATATTCTGACTG+CGG - chr4_1:40684107-40684126 Msa0547460:CDS 30.0%
TTTCAAACCAATAGGGAATA+GGG + chr4_1:40684454-40684473 None:intergenic 30.0%
ATTTCAAACCAATAGGGAAT+AGG + chr4_1:40684455-40684474 None:intergenic 30.0%
!! TTCCTGATATTGATTCCTAT+TGG - chr4_1:40684737-40684756 Msa0547460:intron 30.0%
AACCAATAGGAATCAATATC+AGG + chr4_1:40684742-40684761 None:intergenic 30.0%
!! TGATATTGATTCCTATTGGT+TGG - chr4_1:40684741-40684760 Msa0547460:intron 30.0%
CTATTTAACGACAAATGTGT+GGG + chr4_1:40685022-40685041 None:intergenic 30.0%
ACTATTTAACGACAAATGTG+TGG + chr4_1:40685023-40685042 None:intergenic 30.0%
GATCCTAAACTTAATTCCAA+AGG - chr4_1:40685060-40685079 Msa0547460:intron 30.0%
!! ACTCCTTTGGAATTAAGTTT+AGG + chr4_1:40685066-40685085 None:intergenic 30.0%
TTGAACCACTCATCTATAAA+TGG + chr4_1:40685302-40685321 None:intergenic 30.0%
AGGTAAAAAATCACAATGCA+GGG + chr4_1:40685455-40685474 None:intergenic 30.0%
AAGGTAAAAAATCACAATGC+AGG + chr4_1:40685456-40685475 None:intergenic 30.0%
!! GAATTTAATTGTTTCTGCAG+TGG - chr4_1:40685481-40685500 Msa0547460:intron 30.0%
!!! GCATAGTTTTTGAGACATAT+AGG + chr4_1:40685513-40685532 None:intergenic 30.0%
ATGTCTCAAAAACTATGCAT+TGG - chr4_1:40685515-40685534 Msa0547460:intron 30.0%
AAGTGATGCGATTGAAATAA+GGG + chr4_1:40685557-40685576 None:intergenic 30.0%
TCTTAATATATGACCAGAAG+AGG + chr4_1:40685947-40685966 None:intergenic 30.0%
TTCTGGTCATATATTAAGAG+AGG - chr4_1:40685948-40685967 Msa0547460:CDS 30.0%
! ATTGGAATAACAACTTGTTC+AGG + chr4_1:40685985-40686004 None:intergenic 30.0%
!! AATAATGTTGATTTAGCTCG+TGG - chr4_1:40686123-40686142 Msa0547460:intron 30.0%
TGAAGAAGACAATGACATAT+TGG - chr4_1:40686209-40686228 Msa0547460:intron 30.0%
! AACCATCTGCAATATCATTT+TGG + chr4_1:40686263-40686282 None:intergenic 30.0%
! AGAATTCAATCCATTTTGAG+TGG + chr4_1:40686805-40686824 None:intergenic 30.0%
CATTTATGAATTAGAAGGGT+CGG + chr4_1:40686892-40686911 None:intergenic 30.0%
TCACACACTAGTTATAACAA+AGG + chr4_1:40686939-40686958 None:intergenic 30.0%
TTATAACTAGTGTGTGAGTT+TGG - chr4_1:40686942-40686961 Msa0547460:intron 30.0%
!! TTAACAACAACAGGTTTTGT+TGG + chr4_1:40687013-40687032 None:intergenic 30.0%
CAGTAAGCGAATCATAAATA+GGG + chr4_1:40687065-40687084 None:intergenic 30.0%
CAATATGAAATCAATCTCGT+AGG - chr4_1:40687182-40687201 Msa0547460:intron 30.0%
! CGAAGATTTTTACTCTTTCA+TGG - chr4_1:40687213-40687232 Msa0547460:intron 30.0%
CATGACATTGGATGATTAAT+TGG - chr4_1:40687286-40687305 Msa0547460:intron 30.0%
GGTTCAAAATAACAGATGAT+TGG - chr4_1:40687308-40687327 Msa0547460:intron 30.0%
CAAAATAACAGATGATTGGT+TGG - chr4_1:40687312-40687331 Msa0547460:intron 30.0%
AATAGCGAATCCAATCTATT+TGG - chr4_1:40687347-40687366 Msa0547460:intron 30.0%
AATGTCATCTGATGAATGAT+TGG - chr4_1:40687379-40687398 Msa0547460:intron 30.0%
ATGTCATCTGATGAATGATT+GGG - chr4_1:40687380-40687399 Msa0547460:intron 30.0%
!! AAAACTGATTTGCAGTGAAT+TGG + chr4_1:40687419-40687438 None:intergenic 30.0%
! AAACTGGTATTTTATGCACT+TGG + chr4_1:40687493-40687512 None:intergenic 30.0%
TTTAACGAACAGGTATAAAC+TGG + chr4_1:40687509-40687528 None:intergenic 30.0%
CATTGAAAATCTAATGTACG+CGG + chr4_1:40687602-40687621 None:intergenic 30.0%
AACAGTTATTGGAATTGGAT+CGG + chr4_1:40687724-40687743 None:intergenic 30.0%
TTGTGGAAAGTTAGTATTCT+CGG - chr4_1:40687763-40687782 Msa0547460:intron 30.0%
! AGAAACTGTAGATTTTGTCT+TGG - chr4_1:40687920-40687939 Msa0547460:intron 30.0%
GGATACACATGTACATATAT+AGG + chr4_1:40688169-40688188 None:intergenic 30.0%
ATTATCTGATCAAGAACAAG+GGG + chr4_1:40688225-40688244 None:intergenic 30.0%
CAATTATCTGATCAAGAACA+AGG + chr4_1:40688227-40688246 None:intergenic 30.0%
! AATCAATAGAAAGGTACAAG+CGG + chr4_1:40688399-40688418 None:intergenic 30.0%
! CTTGTACCTTTCTATTGATT+CGG - chr4_1:40688399-40688418 Msa0547460:intron 30.0%
! GAACTTGTTTCAAGAACTTT+AGG - chr4_1:40688441-40688460 Msa0547460:intron 30.0%
TAGAAATTGAAAGAAGTTGG+AGG - chr4_1:40688489-40688508 Msa0547460:intron 30.0%
ATGCTTGATATTGAAGTTGA+CGG - chr4_1:40688640-40688659 Msa0547460:five_prime_UTR 30.0%
TATTCTTCAATTATCTACCG+AGG - chr4_1:40688687-40688706 Msa0547460:intron 30.0%
ATTCTTCAATTATCTACCGA+GGG - chr4_1:40688688-40688707 Msa0547460:intron 30.0%
GTTTAAACTTCCTAATTTGG+TGG - chr4_1:40688754-40688773 Msa0547460:intron 30.0%
! TTAAACTTCCTAATTTGGTG+GGG - chr4_1:40688756-40688775 Msa0547460:intron 30.0%
!! TATCCAATACGGTTAGTTTG+CGG + chr4_1:40678963-40678982 None:intergenic 35.0%
CGTATTGGATAATCGTTGAT+AGG - chr4_1:40678972-40678991 Msa0547460:three_prime_UTR 35.0%
!!! GATTGCTTCTTCTGGTTTTT+TGG - chr4_1:40678998-40679017 Msa0547460:three_prime_UTR 35.0%
!!! TTCTTCTGGTTTTTTGGGTT+TGG - chr4_1:40679004-40679023 Msa0547460:three_prime_UTR 35.0%
!!! TCTTCTGGTTTTTTGGGTTT+GGG - chr4_1:40679005-40679024 Msa0547460:three_prime_UTR 35.0%
TGATTAGGGTTTGGAGATTA+GGG + chr4_1:40679129-40679148 None:intergenic 35.0%
CCTCCGATTCATTCTTATTA+CGG - chr4_1:40679149-40679168 Msa0547460:three_prime_UTR 35.0%
AGAAGCGAATAATCAACACA+TGG + chr4_1:40679290-40679309 None:intergenic 35.0%
!!! GAGTCTGTTGATTCAGTTTT+TGG - chr4_1:40679315-40679334 Msa0547460:three_prime_UTR 35.0%
! TGGTCAATTCTTAGGTTTTG+TGG - chr4_1:40679335-40679354 Msa0547460:three_prime_UTR 35.0%
!! AGGTTTTGTGGAAATGGATT+TGG - chr4_1:40679347-40679366 Msa0547460:three_prime_UTR 35.0%
TGAATTTATATGGACAGTGG+AGG - chr4_1:40679548-40679567 Msa0547460:CDS 35.0%
!!! GAGGAGGAGGTTTTTTTTAA+TGG - chr4_1:40679567-40679586 Msa0547460:CDS 35.0%
! GGTGTATATGCATTTTCGAT+TGG - chr4_1:40679600-40679619 Msa0547460:CDS 35.0%
CGTGGGGATATATATATAGT+TGG - chr4_1:40679704-40679723 Msa0547460:intron 35.0%
AATCTGTCAACAATCAATGC+GGG + chr4_1:40679885-40679904 None:intergenic 35.0%
CAATCTGTCAACAATCAATG+CGG + chr4_1:40679886-40679905 None:intergenic 35.0%
TGTTTAAATGCTTCCGATGA+GGG + chr4_1:40679948-40679967 None:intergenic 35.0%
TTGTTTAAATGCTTCCGATG+AGG + chr4_1:40679949-40679968 None:intergenic 35.0%
TTTGCAATAGTGCGCTAATT+TGG + chr4_1:40680034-40680053 None:intergenic 35.0%
TTAGCGCACTATTGCAAAAT+TGG - chr4_1:40680036-40680055 Msa0547460:intron 35.0%
TAGCGCACTATTGCAAAATT+GGG - chr4_1:40680037-40680056 Msa0547460:intron 35.0%
GTTTCCATGCCTAATAAAAC+TGG - chr4_1:40680112-40680131 Msa0547460:intron 35.0%
!!! ACTACCAGTTTTATTAGGCA+TGG + chr4_1:40680119-40680138 None:intergenic 35.0%
GGTTCGTCATTTCTATGAAT+TGG - chr4_1:40680152-40680171 Msa0547460:intron 35.0%
AATTCGTATGTACCAATTGG+AGG + chr4_1:40680211-40680230 None:intergenic 35.0%
TCCAATTGGTACATACGAAT+TGG - chr4_1:40680210-40680229 Msa0547460:intron 35.0%
ACCAATTCGTATGTACCAAT+TGG + chr4_1:40680214-40680233 None:intergenic 35.0%
CCAATACTTGCACAAAAACT+AGG + chr4_1:40680348-40680367 None:intergenic 35.0%
!! CCTAGTTTTTGTGCAAGTAT+TGG - chr4_1:40680345-40680364 Msa0547460:intron 35.0%
GAACGATGTGATTTCATAGT+TGG - chr4_1:40680377-40680396 Msa0547460:intron 35.0%
ATACTTCTGACCTCTCTTAT+AGG - chr4_1:40680606-40680625 Msa0547460:intron 35.0%
TTTCCGTATAAAAGAGCTCA+AGG - chr4_1:40680642-40680661 Msa0547460:intron 35.0%
! CATCCTTGAGCTCTTTTATA+CGG + chr4_1:40680648-40680667 None:intergenic 35.0%
TCAGTTAGGACTTTCAAAAC+AGG - chr4_1:40680675-40680694 Msa0547460:intron 35.0%
CAGTTAGGACTTTCAAAACA+GGG - chr4_1:40680676-40680695 Msa0547460:intron 35.0%
! ATATGACGTCTTGGAGTTTT+TGG - chr4_1:40680855-40680874 Msa0547460:intron 35.0%
! AAGCATAGCAGAGAAGTATA+AGG + chr4_1:40681000-40681019 None:intergenic 35.0%
! TTCTCTGCTATGCTTTTACT+GGG - chr4_1:40681005-40681024 Msa0547460:intron 35.0%
GTTTCAACAATACCTGCATA+TGG - chr4_1:40681057-40681076 Msa0547460:CDS 35.0%
ACATCTACATTTCCATATGC+AGG + chr4_1:40681072-40681091 None:intergenic 35.0%
GAATTAACTACTCAACAAGG+AGG + chr4_1:40681274-40681293 None:intergenic 35.0%
ATTTACATATGCGAGAGAAG+GGG + chr4_1:40681350-40681369 None:intergenic 35.0%
GATTTACATATGCGAGAGAA+GGG + chr4_1:40681351-40681370 None:intergenic 35.0%
AGATTTACATATGCGAGAGA+AGG + chr4_1:40681352-40681371 None:intergenic 35.0%
TGAAATGAATGTCTACTTCG+TGG - chr4_1:40681394-40681413 Msa0547460:CDS 35.0%
GAAATGAATGTCTACTTCGT+GGG - chr4_1:40681395-40681414 Msa0547460:CDS 35.0%
GTTTACATGAGAAAGGATGA+AGG + chr4_1:40681503-40681522 None:intergenic 35.0%
GAAACTGAGACAAAAGCAAA+AGG + chr4_1:40681533-40681552 None:intergenic 35.0%
TTGTCTCAGTTTCCAGAATA+TGG - chr4_1:40681540-40681559 Msa0547460:CDS 35.0%
TGTCTCAGTTTCCAGAATAT+GGG - chr4_1:40681541-40681560 Msa0547460:CDS 35.0%
! AATTGGTGGATGACACATAT+AGG - chr4_1:40681600-40681619 Msa0547460:CDS 35.0%
TATTCTATAACCCATTCCCT+TGG - chr4_1:40681785-40681804 Msa0547460:CDS 35.0%
ATAAGAAATAGGAAGGCCAA+GGG + chr4_1:40681804-40681823 None:intergenic 35.0%
AATAAGAAATAGGAAGGCCA+AGG + chr4_1:40681805-40681824 None:intergenic 35.0%
! TTGGCCTTCCTATTTCTTAT+TGG - chr4_1:40681804-40681823 Msa0547460:CDS 35.0%
ACTCAGGAAAATGCAGATAT+CGG - chr4_1:40681847-40681866 Msa0547460:CDS 35.0%
GTCAGATAGTAGTAATGTGA+AGG - chr4_1:40681904-40681923 Msa0547460:CDS 35.0%
! CAGTGGGGCATATAATTTTA+TGG + chr4_1:40682067-40682086 None:intergenic 35.0%
GAAATATTGCATGTACAGTG+GGG + chr4_1:40682082-40682101 None:intergenic 35.0%
TTATCAAATGTGCAACATGC+AGG + chr4_1:40682181-40682200 None:intergenic 35.0%
AAGAAAGGGAACATGACATA+CGG + chr4_1:40682367-40682386 None:intergenic 35.0%
AAATTTGCCCTAATCCATGA+AGG + chr4_1:40682400-40682419 None:intergenic 35.0%
!!! ACTGAAACTGTTTTAGTGTG+AGG - chr4_1:40682450-40682469 Msa0547460:intron 35.0%
!!! TTGTGACCCATTTTTAGTTG+TGG - chr4_1:40682639-40682658 Msa0547460:intron 35.0%
CCAACTCCACAACTAAAAAT+GGG + chr4_1:40682648-40682667 None:intergenic 35.0%
ACCAACTCCACAACTAAAAA+TGG + chr4_1:40682649-40682668 None:intergenic 35.0%
TCCTTTGTTACCTGTAAAGT+TGG - chr4_1:40683081-40683100 Msa0547460:intron 35.0%
!! AATACTACATTTTGGGGGTT+GGG - chr4_1:40683241-40683260 Msa0547460:intron 35.0%
GTTAGTGCAAATTCCTTTAC+TGG - chr4_1:40683288-40683307 Msa0547460:intron 35.0%
!!! TTTTGAGGTAGAATTACCTC+TGG - chr4_1:40683404-40683423 Msa0547460:intron 35.0%
AGCAGATAATTATTCGCACA+CGG + chr4_1:40683514-40683533 None:intergenic 35.0%
! CTTCATTGCAGTATTTTGCT+TGG - chr4_1:40683553-40683572 Msa0547460:intron 35.0%
! ATTGCAGTATTTTGCTTGGT+TGG - chr4_1:40683557-40683576 Msa0547460:intron 35.0%
! TGGTACTGAACAATTCAAAC+AGG + chr4_1:40683596-40683615 None:intergenic 35.0%
CAAGAATTTGATGTTGAGGT+TGG - chr4_1:40683681-40683700 Msa0547460:CDS 35.0%
! ATTTGATGTTGAGGTTGGTT+TGG - chr4_1:40683686-40683705 Msa0547460:CDS 35.0%
! TTTGGATTTTCAGTGCTTGT+AGG - chr4_1:40683704-40683723 Msa0547460:CDS 35.0%
TATACAGACCTAGCAGTTAA+TGG - chr4_1:40683833-40683852 Msa0547460:intron 35.0%
!! TGAAAGTACCATTAACTGCT+AGG + chr4_1:40683844-40683863 None:intergenic 35.0%
GGTCTATTAGTTGTTCGAAT+AGG + chr4_1:40684011-40684030 None:intergenic 35.0%
ATTCGAACAACTAATAGACC+TGG - chr4_1:40684011-40684030 Msa0547460:intron 35.0%
! ATGCTCGCATTTTCTGTTTA+GGG - chr4_1:40684251-40684270 Msa0547460:CDS 35.0%
ACTTATTGTTCAGTACCACA+AGG + chr4_1:40684378-40684397 None:intergenic 35.0%
TATTGATCCCTATTCCCTAT+TGG - chr4_1:40684444-40684463 Msa0547460:intron 35.0%
TTTAGTAGAAGCAACACTTG+AGG + chr4_1:40684565-40684584 None:intergenic 35.0%
TTTCAGACTGACATTGTACA+GGG + chr4_1:40684717-40684736 None:intergenic 35.0%
ATTTCAGACTGACATTGTAC+AGG + chr4_1:40684718-40684737 None:intergenic 35.0%
TTAATTCCAAAGGAGTCTGA+CGG - chr4_1:40685070-40685089 Msa0547460:intron 35.0%
AGAAACGAAAAAAGCCTTAC+CGG + chr4_1:40685223-40685242 None:intergenic 35.0%
AATGCAAGGTTTGAATCTTC+CGG + chr4_1:40685337-40685356 None:intergenic 35.0%
ATTCAAACCTTGCATTCACA+TGG - chr4_1:40685341-40685360 Msa0547460:intron 35.0%
TTCAAACCTTGCATTCACAT+GGG - chr4_1:40685342-40685361 Msa0547460:intron 35.0%
AATGAATCAACGGTCAAGAA+AGG - chr4_1:40685392-40685411 Msa0547460:intron 35.0%
GGTAAAAAATCACAATGCAG+GGG + chr4_1:40685454-40685473 None:intergenic 35.0%
GAAGTGATGCGATTGAAATA+AGG + chr4_1:40685558-40685577 None:intergenic 35.0%
TTTCAATCGCATCACTTCTA+TGG - chr4_1:40685560-40685579 Msa0547460:intron 35.0%
CTGGTACAGATGATTAATTG+CGG - chr4_1:40685649-40685668 Msa0547460:CDS 35.0%
AAAGTGAACGTCTGGATTTA+GGG - chr4_1:40685734-40685753 Msa0547460:intron 35.0%
AACACTGAAGCAAGTAAAAC+AGG - chr4_1:40685828-40685847 Msa0547460:intron 35.0%
!! AAACAGGAAGGTTTTTCAGA+TGG - chr4_1:40685844-40685863 Msa0547460:intron 35.0%
! CTGGTTTAAAACTTGGCATT+AGG - chr4_1:40685872-40685891 Msa0547460:intron 35.0%
! GTTTAAAACTTGGCATTAGG+AGG - chr4_1:40685875-40685894 Msa0547460:intron 35.0%
TACTACCAATGGAATTGAGA+TGG - chr4_1:40686086-40686105 Msa0547460:intron 35.0%
AGAATCCATCTCAATTCCAT+TGG + chr4_1:40686094-40686113 None:intergenic 35.0%
!! TGGTTGTTATTTGCAATTGG+AGG + chr4_1:40686240-40686259 None:intergenic 35.0%
!! TGGTGGTTGTTATTTGCAAT+TGG + chr4_1:40686243-40686262 None:intergenic 35.0%
! CATCTGCAATATCATTTTGG+TGG + chr4_1:40686260-40686279 None:intergenic 35.0%
CACCAAAATGATATTGCAGA+TGG - chr4_1:40686258-40686277 Msa0547460:intron 35.0%
GATTCTGATCTTCAGTGTAT+GGG + chr4_1:40686314-40686333 None:intergenic 35.0%
AGATTCTGATCTTCAGTGTA+TGG + chr4_1:40686315-40686334 None:intergenic 35.0%
TACACTGAAGATCAGAATCT+CGG - chr4_1:40686315-40686334 Msa0547460:CDS 35.0%
!!! ATTTTGGAATATCTTCCCTG+TGG - chr4_1:40686376-40686395 Msa0547460:intron 35.0%
AGTGATGAGGTGCAATTAAT+AGG + chr4_1:40686495-40686514 None:intergenic 35.0%
GATCAAGCAAATGTCTCTAA+TGG - chr4_1:40686711-40686730 Msa0547460:intron 35.0%
CAAAGGACTAAAAATGCAAG+CGG + chr4_1:40686922-40686941 None:intergenic 35.0%
AGTTTGGTCCTTCAATTAGA+AGG - chr4_1:40686958-40686977 Msa0547460:intron 35.0%
GTTTGGTCCTTCAATTAGAA+GGG - chr4_1:40686959-40686978 Msa0547460:intron 35.0%
TTTGGTCCTTCAATTAGAAG+GGG - chr4_1:40686960-40686979 Msa0547460:intron 35.0%
CATAATCCCCTTCTAATTGA+AGG + chr4_1:40686969-40686988 None:intergenic 35.0%
CCAGTAAGCGAATCATAAAT+AGG + chr4_1:40687066-40687085 None:intergenic 35.0%
CCTATTTATGATTCGCTTAC+TGG - chr4_1:40687063-40687082 Msa0547460:intron 35.0%
! TAACAGATGATTGGTTGGAT+TGG - chr4_1:40687317-40687336 Msa0547460:intron 35.0%
! AACAGATGATTGGTTGGATT+GGG - chr4_1:40687318-40687337 Msa0547460:intron 35.0%
! TGGTATTTTATGCACTTGGA+TGG + chr4_1:40687489-40687508 None:intergenic 35.0%
AAGGTAGCAATTTAACGAAC+AGG + chr4_1:40687519-40687538 None:intergenic 35.0%
! CGCGTACATTAGATTTTCAA+TGG - chr4_1:40687600-40687619 Msa0547460:intron 35.0%
!! TTGCAACTTGGTGCTATAAA+AGG + chr4_1:40687659-40687678 None:intergenic 35.0%
CCAGAAACAGTTATTGGAAT+TGG + chr4_1:40687729-40687748 None:intergenic 35.0%
CCAATTCCAATAACTGTTTC+TGG - chr4_1:40687726-40687745 Msa0547460:intron 35.0%
CCTAAACCAGAAACAGTTAT+TGG + chr4_1:40687735-40687754 None:intergenic 35.0%
!! CCAATAACTGTTTCTGGTTT+AGG - chr4_1:40687732-40687751 Msa0547460:intron 35.0%
!! TGGTTTAGGTCGTTTTATTG+TGG - chr4_1:40687746-40687765 Msa0547460:intron 35.0%
!! GTATTCTCGGAATTTTGAAG+AGG - chr4_1:40687776-40687795 Msa0547460:intron 35.0%
! AAAAGGTGTAAGAAAGTTGC+CGG - chr4_1:40687859-40687878 Msa0547460:intron 35.0%
! ATTGAGCACTGCTATTCAAA+TGG - chr4_1:40687891-40687910 Msa0547460:intron 35.0%
! CTCACCTTTTGCATTGTTTA+TGG - chr4_1:40688197-40688216 Msa0547460:intron 35.0%
GGAACCATAAACAATGCAAA+AGG + chr4_1:40688204-40688223 None:intergenic 35.0%
! ATCAATAGAAAGGTACAAGC+GGG + chr4_1:40688398-40688417 None:intergenic 35.0%
!! CCTTTCTATTGATTCGGAAT+CGG - chr4_1:40688405-40688424 Msa0547460:intron 35.0%
!! TTGATTCGGAATCGGAATAA+AGG - chr4_1:40688413-40688432 Msa0547460:intron 35.0%
!!! AAAGAAGTTGGAGGCATTTT+TGG - chr4_1:40688498-40688517 Msa0547460:intron 35.0%
CTCTGGTGGAAGATATAAAT+TGG - chr4_1:40688553-40688572 Msa0547460:exon 35.0%
CAATATCATTTGCCAAAGAG+GGG + chr4_1:40688597-40688616 None:intergenic 35.0%
CCAATATCATTTGCCAAAGA+GGG + chr4_1:40688598-40688617 None:intergenic 35.0%
TGGAGAAACAAGAATCTTTG+CGG + chr4_1:40688621-40688640 None:intergenic 35.0%
GTCAACTTCAATATCAAGCA+TGG + chr4_1:40688641-40688660 None:intergenic 35.0%
TGCTTGATATTGAAGTTGAC+GGG - chr4_1:40688641-40688660 Msa0547460:five_prime_UTR 35.0%
!!! TGCTGGTTTTACTGTATAGT+TGG - chr4_1:40688716-40688735 Msa0547460:intron 35.0%
GTATAGTTGGTCATTCAATC+TGG - chr4_1:40688729-40688748 Msa0547460:intron 35.0%
! GAAATTTTCCCCACCAAATT+AGG + chr4_1:40688767-40688786 None:intergenic 35.0%
! ACCTGTAAATGTTTAGCCTT+CGG - chr4_1:40688838-40688857 Msa0547460:five_prime_UTR 35.0%
AATTCTCTTGTTGAATCCGA+AGG + chr4_1:40688857-40688876 None:intergenic 35.0%
! TCAATTCTAGACGCACTTTT+GGG + chr4_1:40688971-40688990 None:intergenic 35.0%
! TTCAATTCTAGACGCACTTT+TGG + chr4_1:40688972-40688991 None:intergenic 35.0%
!!! TGGTTTTTTGGGTTTGGGTT+TGG - chr4_1:40679010-40679029 Msa0547460:three_prime_UTR 40.0%
GTGATTAGGGTTTGGAGATT+AGG + chr4_1:40679130-40679149 None:intergenic 40.0%
GAATGAATCGGAGGTGATTA+GGG + chr4_1:40679143-40679162 None:intergenic 40.0%
AGAATGAATCGGAGGTGATT+AGG + chr4_1:40679144-40679163 None:intergenic 40.0%
CCGTAATAAGAATGAATCGG+AGG + chr4_1:40679152-40679171 None:intergenic 40.0%
! GATCAGATTGGTTACTACTG+CGG - chr4_1:40679259-40679278 Msa0547460:three_prime_UTR 40.0%
ATTTATATGGACAGTGGAGG+AGG - chr4_1:40679551-40679570 Msa0547460:CDS 40.0%
! TTGCAATTCGCTTTGCTATG+TGG - chr4_1:40679667-40679686 Msa0547460:intron 40.0%
! ATTCGCTTTGCTATGTGGTA+CGG - chr4_1:40679672-40679691 Msa0547460:intron 40.0%
TCACACAGTTCATTGTACCA+TGG - chr4_1:40680005-40680024 Msa0547460:intron 40.0%
CTATTGCAAAATTGGGTGTG+CGG - chr4_1:40680044-40680063 Msa0547460:intron 40.0%
TATTGCAAAATTGGGTGTGC+GGG - chr4_1:40680045-40680064 Msa0547460:intron 40.0%
GGAAACAACCGTAGTAAAAC+TGG + chr4_1:40680098-40680117 None:intergenic 40.0%
TTCAAAACAGGGAAAGAAGC+AGG - chr4_1:40680687-40680706 Msa0547460:intron 40.0%
ATCCTACAGAAGACAAAGCA+CGG + chr4_1:40680896-40680915 None:intergenic 40.0%
! CTTCTCTGCTATGCTTTTAC+TGG - chr4_1:40681004-40681023 Msa0547460:intron 40.0%
! TCTCTGCTATGCTTTTACTG+GGG - chr4_1:40681006-40681025 Msa0547460:intron 40.0%
TTAGATGGAATCTTAGGCCA+AGG - chr4_1:40681202-40681221 Msa0547460:CDS 40.0%
CTAGCTGTTTGCTTTCATAC+AGG - chr4_1:40681293-40681312 Msa0547460:CDS 40.0%
TTTACATATGCGAGAGAAGG+GGG + chr4_1:40681349-40681368 None:intergenic 40.0%
AGAAAGGATGAAGGAACACA+AGG + chr4_1:40681494-40681513 None:intergenic 40.0%
ATTCTTCTTGGCCCATATTC+TGG + chr4_1:40681555-40681574 None:intergenic 40.0%
TTTCCCAACAGCATTCTTCT+TGG + chr4_1:40681567-40681586 None:intergenic 40.0%
TGATGTGGTACTATGCCATT+AGG - chr4_1:40681732-40681751 Msa0547460:CDS 40.0%
CTCAGGAAAATGCAGATATC+GGG - chr4_1:40681848-40681867 Msa0547460:CDS 40.0%
! TGTGGAAGTACATTGGAAAC+AGG - chr4_1:40681992-40682011 Msa0547460:CDS 40.0%
! GTGGAAGTACATTGGAAACA+GGG - chr4_1:40681993-40682012 Msa0547460:CDS 40.0%
! TGGAAGTACATTGGAAACAG+GGG - chr4_1:40681994-40682013 Msa0547460:CDS 40.0%
ATTCCAGAGAAACCTATGGA+AGG - chr4_1:40682283-40682302 Msa0547460:intron 40.0%
AGAAAGGGAACATGACATAC+GGG + chr4_1:40682366-40682385 None:intergenic 40.0%
!!! CCCATTTTTAGTTGTGGAGT+TGG - chr4_1:40682645-40682664 Msa0547460:intron 40.0%
TTGTATTCTTGGGGCCTATT+TGG - chr4_1:40682825-40682844 Msa0547460:CDS 40.0%
TTGAAAGCCGCAAACCAAAT+AGG + chr4_1:40682842-40682861 None:intergenic 40.0%
GCCAACTTTACAGGTAACAA+AGG + chr4_1:40683085-40683104 None:intergenic 40.0%
!! GAATACTACATTTTGGGGGT+TGG - chr4_1:40683240-40683259 Msa0547460:intron 40.0%
CGGTCATTTGATTGTGTCTT+GGG + chr4_1:40683494-40683513 None:intergenic 40.0%
ACGGTCATTTGATTGTGTCT+TGG + chr4_1:40683495-40683514 None:intergenic 40.0%
CGAAAAATTACGTGTAGGCT+TGG - chr4_1:40683762-40683781 Msa0547460:intron 40.0%
AGGTTCCATTCAGGATTCAA+TGG - chr4_1:40683804-40683823 Msa0547460:intron 40.0%
! GATGCTCGCATTTTCTGTTT+AGG - chr4_1:40684250-40684269 Msa0547460:CDS 40.0%
! TGCTCGCATTTTCTGTTTAG+GGG - chr4_1:40684252-40684271 Msa0547460:CDS 40.0%
ATTGTTCAGTACCACAAGGA+GGG + chr4_1:40684374-40684393 None:intergenic 40.0%
TATTGTTCAGTACCACAAGG+AGG + chr4_1:40684375-40684394 None:intergenic 40.0%
TTTCAGACTGACACTGTACA+GGG + chr4_1:40684417-40684436 None:intergenic 40.0%
ATTTCAGACTGACACTGTAC+AGG + chr4_1:40684418-40684437 None:intergenic 40.0%
AGGGAATAGGGATCAATATC+AGG + chr4_1:40684442-40684461 None:intergenic 40.0%
TTTGAATAACACCCGACTGT+CGG - chr4_1:40684828-40684847 Msa0547460:CDS 40.0%
TAGAGTAGAAGCAACACTTG+AGG + chr4_1:40684874-40684893 None:intergenic 40.0%
AAATGTGTGGGAGTAATGCA+CGG + chr4_1:40685010-40685029 None:intergenic 40.0%
GGTTCAAGAATGAAGATTGC+CGG - chr4_1:40685315-40685334 Msa0547460:intron 40.0%
AAACAACCCATGTGAATGCA+AGG + chr4_1:40685351-40685370 None:intergenic 40.0%
TGAAGATGTTACAGAGGTTG+AGG - chr4_1:40685672-40685691 Msa0547460:CDS 40.0%
AAAGAGTGAAAGTGAACGTC+TGG - chr4_1:40685726-40685745 Msa0547460:intron 40.0%
GAAAGTGAACGTCTGGATTT+AGG - chr4_1:40685733-40685752 Msa0547460:intron 40.0%
ATTTAGGGATTCTTGGCCAA+TGG - chr4_1:40685749-40685768 Msa0547460:intron 40.0%
ATCCATTAGGAAGATGCCAT+TGG + chr4_1:40685768-40685787 None:intergenic 40.0%
GAAGTACAAAGGGATCCATT+AGG + chr4_1:40685781-40685800 None:intergenic 40.0%
! TCCAGCAGTAGAAGTACAAA+GGG + chr4_1:40685791-40685810 None:intergenic 40.0%
CTGAAGCAAGTAAAACAGGA+AGG - chr4_1:40685832-40685851 Msa0547460:intron 40.0%
!!! ATGCCAAGTTTTAAACCAGC+AGG + chr4_1:40685871-40685890 None:intergenic 40.0%
!! AGAAGAGGTGTTTGTTGTCT+CGG + chr4_1:40685932-40685951 None:intergenic 40.0%
CAAATGAACCAATGCATCAG+AGG + chr4_1:40686463-40686482 None:intergenic 40.0%
AATTGCACCTCATCACTGAA+CGG - chr4_1:40686498-40686517 Msa0547460:intron 40.0%
ATCACTGAACGGTTATGCAT+TGG - chr4_1:40686509-40686528 Msa0547460:intron 40.0%
! GGGAGAAAAATCTGAAGTGA+GGG + chr4_1:40686651-40686670 None:intergenic 40.0%
ATGGTGTTTCCACTGAAGAT+TGG - chr4_1:40686730-40686749 Msa0547460:intron 40.0%
AGACAATGGCGCAAATACTT+TGG - chr4_1:40686845-40686864 Msa0547460:intron 40.0%
! GCAAATACTTTGGCTGATTC+TGG - chr4_1:40686855-40686874 Msa0547460:intron 40.0%
!!! AACAACAGGTTTTGTTGGCA+TGG + chr4_1:40687008-40687027 None:intergenic 40.0%
TTTCATGGGGCCATCAATTA+GGG - chr4_1:40687228-40687247 Msa0547460:CDS 40.0%
CTGTGAGATGATCTTGTGAA+AGG + chr4_1:40687632-40687651 None:intergenic 40.0%
! AAAGGTGTAAGAAAGTTGCC+GGG - chr4_1:40687860-40687879 Msa0547460:intron 40.0%
AGTGCTCAATACAAGAAACC+CGG + chr4_1:40687881-40687900 None:intergenic 40.0%
GAAGACTAAACACAGCAACA+TGG + chr4_1:40687966-40687985 None:intergenic 40.0%
GCACTAAGATTCATATGGTG+AGG + chr4_1:40687988-40688007 None:intergenic 40.0%
TGCTCGCACTAAGATTCATA+TGG + chr4_1:40687993-40688012 None:intergenic 40.0%
AGAAGCTGCACAAGAAGATA+TGG + chr4_1:40688278-40688297 None:intergenic 40.0%
! TTTTGGCGAGGAAATGTGAA+AGG + chr4_1:40688361-40688380 None:intergenic 40.0%
! TCAATAGAAAGGTACAAGCG+GGG + chr4_1:40688397-40688416 None:intergenic 40.0%
CCGATTCCGAATCAATAGAA+AGG + chr4_1:40688408-40688427 None:intergenic 40.0%
!!! CATTTTTGGTCCTCATAACG+TGG - chr4_1:40688512-40688531 Msa0547460:intron 40.0%
ATACATACTGCCACGTTATG+AGG + chr4_1:40688525-40688544 None:intergenic 40.0%
TAACGTGGCAGTATGTATTG+AGG - chr4_1:40688527-40688546 Msa0547460:intron 40.0%
! AGTATGTATTGAGGCATCTC+TGG - chr4_1:40688536-40688555 Msa0547460:intron 40.0%
CCCTCTTTGGCAAATGATAT+TGG - chr4_1:40688595-40688614 Msa0547460:five_prime_UTR 40.0%
GCCAATATCATTTGCCAAAG+AGG + chr4_1:40688599-40688618 None:intergenic 40.0%
!! ATATTGAAGTTGACGGGTTG+TGG - chr4_1:40688647-40688666 Msa0547460:five_prime_UTR 40.0%
TAAAACCAGCACTATACCCT+CGG + chr4_1:40688707-40688726 None:intergenic 40.0%
TCCGAAGGCTAAACATTTAC+AGG + chr4_1:40688842-40688861 None:intergenic 40.0%
!! CTTGTGCCCATTTTTACATC+TGG - chr4_1:40688915-40688934 Msa0547460:five_prime_UTR 40.0%
AACACGTCCGGGTTAAGTTT+CGG + chr4_1:40678939-40678958 None:intergenic 45.0%
TTGCCGCAAACTAACCGTAT+TGG - chr4_1:40678957-40678976 Msa0547460:three_prime_UTR 45.0%
ATAGGTCCGATTGCTTCTTC+TGG - chr4_1:40678990-40679009 Msa0547460:three_prime_UTR 45.0%
! GTTTGTTGAAATCACGCACG+CGG + chr4_1:40679107-40679126 None:intergenic 45.0%
AATCGGAGGTGATTAGGGTT+TGG + chr4_1:40679138-40679157 None:intergenic 45.0%
! GTGGAAATGGATTTGGTAGC+CGG - chr4_1:40679354-40679373 Msa0547460:three_prime_UTR 45.0%
ATGCCTTCGATCAGTAGTGT+CGG - chr4_1:40679491-40679510 Msa0547460:exon 45.0%
! TTCGCTTTGCTATGTGGTAC+GGG - chr4_1:40679673-40679692 Msa0547460:intron 45.0%
! TGGTTCACTGTTTAGGTTCG+TGG - chr4_1:40679724-40679743 Msa0547460:intron 45.0%
GGGTTCCCATGTCTAGTTAA+TGG - chr4_1:40680065-40680084 Msa0547460:intron 45.0%
!! GAATTGGTTCGCAGTTCTCA+TGG - chr4_1:40680226-40680245 Msa0547460:intron 45.0%
!! AAGGATGTGCTGACTCAGTT+AGG - chr4_1:40680661-40680680 Msa0547460:intron 45.0%
TCCTACAGAAGACAAAGCAC+GGG + chr4_1:40680895-40680914 None:intergenic 45.0%
TTCTGTAGGATCTCGTCGAT+CGG - chr4_1:40680905-40680924 Msa0547460:intron 45.0%
TCCATACTCTCAGATGAGCA+AGG - chr4_1:40680934-40680953 Msa0547460:intron 45.0%
ACCTTGCTCATCTGAGAGTA+TGG + chr4_1:40680938-40680957 None:intergenic 45.0%
AACAAGGAGGGTTTACCGTT+GGG + chr4_1:40681261-40681280 None:intergenic 45.0%
AGGGGGAAATGGATCAAACT+TGG + chr4_1:40681332-40681351 None:intergenic 45.0%
GAAAGAGCAGGTGGCAAAAT+TGG - chr4_1:40681583-40681602 Msa0547460:CDS 45.0%
CAGCATCAACAATAGCTGCT+AGG + chr4_1:40681638-40681657 None:intergenic 45.0%
TATGCCATTAGGCCTGGTTT+GGG - chr4_1:40681743-40681762 Msa0547460:CDS 45.0%
AATAGGAAGGCCAAGGGAAT+GGG + chr4_1:40681798-40681817 None:intergenic 45.0%
AAATAGGAAGGCCAAGGGAA+TGG + chr4_1:40681799-40681818 None:intergenic 45.0%
AGCCACTGATCTAGCATCAA+AGG - chr4_1:40681871-40681890 Msa0547460:CDS 45.0%
GCCACTGATCTAGCATCAAA+GGG - chr4_1:40681872-40681891 Msa0547460:CDS 45.0%
ACCCTTTGATGCTAGATCAG+TGG + chr4_1:40681876-40681895 None:intergenic 45.0%
TGATCTAGCATCAAAGGGTC+AGG - chr4_1:40681877-40681896 Msa0547460:CDS 45.0%
ACAAAGATTCGCTGTCTCTG+TGG - chr4_1:40681974-40681993 Msa0547460:CDS 45.0%
! CTGTCTCTGTGGAAGTACAT+TGG - chr4_1:40681985-40682004 Msa0547460:CDS 45.0%
GGAAACAGGGGATTTGATCA+AGG - chr4_1:40682006-40682025 Msa0547460:CDS 45.0%
TCAAATGTGCAACATGCAGG+AGG + chr4_1:40682178-40682197 None:intergenic 45.0%
ATGATGCAAGATGCCAAGTG+TGG - chr4_1:40682239-40682258 Msa0547460:CDS 45.0%
AACTGATGTGTTGCCACACT+TGG + chr4_1:40682255-40682274 None:intergenic 45.0%
ATGCCTTCCATAGGTTTCTC+TGG + chr4_1:40682289-40682308 None:intergenic 45.0%
TGTGAGGCTGTTATCGTTGA+AGG - chr4_1:40682466-40682485 Msa0547460:intron 45.0%
! TCTCAGTTGGTGTAGTGAAC+TGG - chr4_1:40682542-40682561 Msa0547460:CDS 45.0%
! ATCAGTCGGAATACTGGTTG+TGG + chr4_1:40683107-40683126 None:intergenic 45.0%
ACAACCAGTATTCCGACTGA+TGG - chr4_1:40683106-40683125 Msa0547460:intron 45.0%
CAACCAGTATTCCGACTGAT+GGG - chr4_1:40683107-40683126 Msa0547460:intron 45.0%
CTACTCTGCAGAGACTGTAA+TGG - chr4_1:40683323-40683342 Msa0547460:intron 45.0%
TCAACTCACAAGAGCAGACA+AGG - chr4_1:40683644-40683663 Msa0547460:CDS 45.0%
GTGTATGCTTCTGAACGACA+AGG - chr4_1:40683784-40683803 Msa0547460:intron 45.0%
TGAACGACAAGGTTCCATTC+AGG - chr4_1:40683795-40683814 Msa0547460:intron 45.0%
TGTGGCCATTGAATCCTGAA+TGG + chr4_1:40683812-40683831 None:intergenic 45.0%
ACTGCTAGGTCTGTATACTG+TGG + chr4_1:40683830-40683849 None:intergenic 45.0%
TCTCAGTTGCTTGGAGCTAA+CGG - chr4_1:40684035-40684054 Msa0547460:intron 45.0%
TATGCGGCGTGATCTGAAAA+AGG + chr4_1:40684192-40684211 None:intergenic 45.0%
ATCACGCCGCATACAAAAGA+CGG - chr4_1:40684199-40684218 Msa0547460:intron 45.0%
GCGAGCATCACATACTGTTA+AGG + chr4_1:40684239-40684258 None:intergenic 45.0%
TAGGGGTTCGAATTGTCAGA+AGG - chr4_1:40684269-40684288 Msa0547460:CDS 45.0%
ATTCCTTTAGTCCCTCCTTG+TGG - chr4_1:40684360-40684379 Msa0547460:intron 45.0%
!! CGTGCAAGAGCATCTTCAAA+AGG + chr4_1:40685100-40685119 None:intergenic 45.0%
! TGCTGATAGCGACAGTGATT+TGG - chr4_1:40685159-40685178 Msa0547460:intron 45.0%
! TAGCGACAGTGATTTGGAAG+TGG - chr4_1:40685165-40685184 Msa0547460:intron 45.0%
CAGTATAAGCCTTCGTTGTC+CGG - chr4_1:40685201-40685220 Msa0547460:intron 45.0%
TTGCGGTGAAGATGTTACAG+AGG - chr4_1:40685666-40685685 Msa0547460:CDS 45.0%
CGTCTGGATTTAGGGATTCT+TGG - chr4_1:40685742-40685761 Msa0547460:intron 45.0%
TCCCTTTGTACTTCTACTGC+TGG - chr4_1:40685787-40685806 Msa0547460:intron 45.0%
! CTCCAGCAGTAGAAGTACAA+AGG + chr4_1:40685792-40685811 None:intergenic 45.0%
!! GGACCTGCTGGTTTAAAACT+TGG - chr4_1:40685865-40685884 Msa0547460:intron 45.0%
GCATTAGGAGGAATCGCAAT+GGG - chr4_1:40685887-40685906 Msa0547460:intron 45.0%
GAGGAATCGCAATGGGAATT+GGG - chr4_1:40685894-40685913 Msa0547460:intron 45.0%
!! GAAGAGGTGTTTGTTGTCTC+GGG + chr4_1:40685931-40685950 None:intergenic 45.0%
GAGACAACAAACACCTCTTC+TGG - chr4_1:40685931-40685950 Msa0547460:CDS 45.0%
GTTATTCCAATGAGCAGCAG+TGG - chr4_1:40685994-40686013 Msa0547460:CDS 45.0%
TGATGATCCCAGTGTTAACC+AGG - chr4_1:40686038-40686057 Msa0547460:CDS 45.0%
GATGATCCCAGTGTTAACCA+GGG - chr4_1:40686039-40686058 Msa0547460:CDS 45.0%
TACGCATAACACATCTGCTC+AGG - chr4_1:40686152-40686171 Msa0547460:intron 45.0%
CATAACACATCTGCTCAGGT+GGG - chr4_1:40686156-40686175 Msa0547460:intron 45.0%
TATGGGTCAACAATTCCAGG+AGG + chr4_1:40686297-40686316 None:intergenic 45.0%
GTGTATGGGTCAACAATTCC+AGG + chr4_1:40686300-40686319 None:intergenic 45.0%
ACTGAAGATCAGAATCTCGG+TGG - chr4_1:40686318-40686337 Msa0547460:CDS 45.0%
GGTCCAGGATTCCAATTGTT+CGG - chr4_1:40686423-40686442 Msa0547460:intron 45.0%
GAACCGAACAATTGGAATCC+TGG + chr4_1:40686429-40686448 None:intergenic 45.0%
CTGCATCAGAACCGAACAAT+TGG + chr4_1:40686437-40686456 None:intergenic 45.0%
! ATTGTTCGGTTCTGATGCAG+AGG - chr4_1:40686437-40686456 Msa0547460:intron 45.0%
TGCATAACCGTTCAGTGATG+AGG + chr4_1:40686508-40686527 None:intergenic 45.0%
CTCTTACAAGATTCCTCTGC+TGG - chr4_1:40686561-40686580 Msa0547460:intron 45.0%
TACAAGATTCCTCTGCTGGA+CGG - chr4_1:40686565-40686584 Msa0547460:intron 45.0%
!! CGGACAGATGCTGACTTAAA+CGG - chr4_1:40686585-40686604 Msa0547460:intron 45.0%
!! ACAGATGCTGACTTAAACGG+TGG - chr4_1:40686588-40686607 Msa0547460:intron 45.0%
!! TGCTGACTTAAACGGTGGTT+TGG - chr4_1:40686593-40686612 Msa0547460:intron 45.0%
!! TGGTTTGGTTGACAACCCAT+TGG - chr4_1:40686608-40686627 Msa0547460:intron 45.0%
CATCTCCAGCAAATGCCAAT+GGG + chr4_1:40686626-40686645 None:intergenic 45.0%
TCATCTCCAGCAAATGCCAA+TGG + chr4_1:40686627-40686646 None:intergenic 45.0%
! GGGGAGAAAAATCTGAAGTG+AGG + chr4_1:40686652-40686671 None:intergenic 45.0%
AAGGGATGTCCAATCTTCAG+TGG + chr4_1:40686742-40686761 None:intergenic 45.0%
GATTGGACATCCCTTACTCT+CGG - chr4_1:40686747-40686766 Msa0547460:intron 45.0%
GGTGATGCTTCCACTCAAAA+TGG - chr4_1:40686792-40686811 Msa0547460:intron 45.0%
AGTATTTGCGCCATTGTCTC+TGG + chr4_1:40686844-40686863 None:intergenic 45.0%
CTTTCATGGGGCCATCAATT+AGG - chr4_1:40687227-40687246 Msa0547460:CDS 45.0%
TGAACAGGCTCCCTAATTGA+TGG + chr4_1:40687241-40687260 None:intergenic 45.0%
ATTGCTACCTTTGTGCGACT+AGG - chr4_1:40687528-40687547 Msa0547460:intron 45.0%
GACTAGGTCACAAGTTTGAG+TGG - chr4_1:40687544-40687563 Msa0547460:intron 45.0%
TAGGTCACAAGTTTGAGTGG+TGG - chr4_1:40687547-40687566 Msa0547460:intron 45.0%
TCCTTCACACAAAGTCGACA+TGG - chr4_1:40688134-40688153 Msa0547460:intron 45.0%
!! ACCATGTCGACTTTGTGTGA+AGG + chr4_1:40688138-40688157 None:intergenic 45.0%
TGCAAAAGGTGAGAAGTTGC+TGG + chr4_1:40688190-40688209 None:intergenic 45.0%
TGTGCAGCTTCTTTGCTTCT+TGG - chr4_1:40688286-40688305 Msa0547460:intron 45.0%
!!! CTTACAGAACGTTTTTGGCG+AGG + chr4_1:40688373-40688392 None:intergenic 45.0%
CTCGCCAAAAACGTTCTGTA+AGG - chr4_1:40688371-40688390 Msa0547460:intron 45.0%
! ATGTATTGAGGCATCTCTGG+TGG - chr4_1:40688539-40688558 Msa0547460:intron 45.0%
GGTGGGGAAAATTTCCCATT+AGG - chr4_1:40688772-40688791 Msa0547460:five_prime_UTR 45.0%
TGGCACACCGAAACTTAACC+CGG - chr4_1:40678929-40678948 Msa0547460:three_prime_UTR 50.0%
!! TTAGTTTGCGGCAACACGTC+CGG + chr4_1:40678951-40678970 None:intergenic 50.0%
!! CGGCAGGGAGTATTGATTGA+TGG + chr4_1:40679087-40679106 None:intergenic 50.0%
! GGATTTGGTAGCCGGTATCA+AGG - chr4_1:40679362-40679381 Msa0547460:three_prime_UTR 50.0%
!! CAGTAGTGTCGGTGCTACAT+AGG - chr4_1:40679502-40679521 Msa0547460:CDS 50.0%
TATATGGACAGTGGAGGAGG+AGG - chr4_1:40679554-40679573 Msa0547460:CDS 50.0%
GTGCGCTAATTTGGACTCCA+TGG + chr4_1:40680025-40680044 None:intergenic 50.0%
ACAAGGAGGGTTTACCGTTG+GGG + chr4_1:40681260-40681279 None:intergenic 50.0%
CAACAAGGAGGGTTTACCGT+TGG + chr4_1:40681262-40681281 None:intergenic 50.0%
TATGCGAGAGAAGGGGGAAA+TGG + chr4_1:40681343-40681362 None:intergenic 50.0%
TGGGCCAAGAAGAATGCTGT+TGG - chr4_1:40681560-40681579 Msa0547460:CDS 50.0%
GGGCCAAGAAGAATGCTGTT+GGG - chr4_1:40681561-40681580 Msa0547460:CDS 50.0%
GAATGCTGTTGGGAAAGAGC+AGG - chr4_1:40681571-40681590 Msa0547460:CDS 50.0%
AGAGCAGGTGGCAAAATTGG+TGG - chr4_1:40681586-40681605 Msa0547460:CDS 50.0%
TGGTACTATGCCATTAGGCC+TGG - chr4_1:40681737-40681756 Msa0547460:CDS 50.0%
CTATGCCATTAGGCCTGGTT+TGG - chr4_1:40681742-40681761 Msa0547460:CDS 50.0%
TCAACCCAAACCAGGCCTAA+TGG + chr4_1:40681750-40681769 None:intergenic 50.0%
CAGCGTAATCAACCCAAACC+AGG + chr4_1:40681758-40681777 None:intergenic 50.0%
!! CTTGGGGCCTATTTGGTTTG+CGG - chr4_1:40682832-40682851 Msa0547460:CDS 50.0%
CTGGTTGTGGCCAACTTTAC+AGG + chr4_1:40683094-40683113 None:intergenic 50.0%
TCACCCATCAGTCGGAATAC+TGG + chr4_1:40683113-40683132 None:intergenic 50.0%
CCATGTACTCACCCATCAGT+CGG + chr4_1:40683121-40683140 None:intergenic 50.0%
! TGATGGGTGAGTACATGGTG+TGG - chr4_1:40683123-40683142 Msa0547460:intron 50.0%
CACAAGAGCAGACAAGGACA+TGG - chr4_1:40683650-40683669 Msa0547460:CDS 50.0%
! AGACCTGGTTCTCAGTTGCT+TGG - chr4_1:40684026-40684045 Msa0547460:intron 50.0%
GTACCACAAGGAGGGACTAA+AGG + chr4_1:40684366-40684385 None:intergenic 50.0%
TAAGCCTTCGTTGTCCGGTA+AGG - chr4_1:40685206-40685225 Msa0547460:intron 50.0%
AAAGCCTTACCGGACAACGA+AGG + chr4_1:40685213-40685232 None:intergenic 50.0%
TTAACACGCCAAGAGCCATC+AGG + chr4_1:40685703-40685722 None:intergenic 50.0%
TGATGGCTCTTGGCGTGTTA+AGG - chr4_1:40685702-40685721 Msa0547460:intron 50.0%
GGCCAATGGCATCTTCCTAA+TGG - chr4_1:40685763-40685782 Msa0547460:intron 50.0%
!! GGTTTTTCAGATGGACCTGC+TGG - chr4_1:40685853-40685872 Msa0547460:intron 50.0%
GGCATTAGGAGGAATCGCAA+TGG - chr4_1:40685886-40685905 Msa0547460:intron 50.0%
GGAGGAATCGCAATGGGAAT+TGG - chr4_1:40685893-40685912 Msa0547460:intron 50.0%
ATCACCATCCCGACCACTTT+CGG + chr4_1:40686022-40686041 None:intergenic 50.0%
GCATAACACATCTGCTCAGG+TGG - chr4_1:40686155-40686174 Msa0547460:intron 50.0%
AACAATTCCAGGAGGTGGCA+TGG + chr4_1:40686289-40686308 None:intergenic 50.0%
TCTCGGTGGAAGTTCATGCT+TGG - chr4_1:40686332-40686351 Msa0547460:CDS 50.0%
CTCGGTGGAAGTTCATGCTT+GGG - chr4_1:40686333-40686352 Msa0547460:CDS 50.0%
TCGGTGGAAGTTCATGCTTG+GGG - chr4_1:40686334-40686353 Msa0547460:CDS 50.0%
TGCAGAAGGCAATGACCACA+GGG + chr4_1:40686394-40686413 None:intergenic 50.0%
ATGCAGAAGGCAATGACCAC+AGG + chr4_1:40686395-40686414 None:intergenic 50.0%
GTCATTGCCTTCTGCATCTC+AGG - chr4_1:40686398-40686417 Msa0547460:intron 50.0%
! ATTGGCTCCCGAAACTGCTT+TGG - chr4_1:40686527-40686546 Msa0547460:intron 50.0%
TTGGCTCCCGAAACTGCTTT+GGG - chr4_1:40686528-40686547 Msa0547460:intron 50.0%
CCAGATCCCAAAGCAGTTTC+GGG + chr4_1:40686537-40686556 None:intergenic 50.0%
GCCAGATCCCAAAGCAGTTT+CGG + chr4_1:40686538-40686557 None:intergenic 50.0%
GACAACCCATTGGCATTTGC+TGG - chr4_1:40686618-40686637 Msa0547460:intron 50.0%
TTCTGCATAGACGACTCAGC+TGG + chr4_1:40686681-40686700 None:intergenic 50.0%
CATTGTCTCTGGATGGGACT+TGG + chr4_1:40686833-40686852 None:intergenic 50.0%
CAAGTCCCATCCAGAGACAA+TGG - chr4_1:40686831-40686850 Msa0547460:intron 50.0%
TTGCGCCATTGTCTCTGGAT+GGG + chr4_1:40686839-40686858 None:intergenic 50.0%
TTTGCGCCATTGTCTCTGGA+TGG + chr4_1:40686840-40686859 None:intergenic 50.0%
CTTGTGACCTAGTCGCACAA+AGG + chr4_1:40687538-40687557 None:intergenic 50.0%
CTGACAGAGCAAGTAGACCA+AGG - chr4_1:40688326-40688345 Msa0547460:intron 50.0%
AGAGCAAGTAGACCAAGGTC+AGG - chr4_1:40688331-40688350 Msa0547460:intron 50.0%
GTGAAAGGACTACCTGACCT+TGG + chr4_1:40688346-40688365 None:intergenic 50.0%
! GGGGCCTTACAGAACGTTTT+TGG + chr4_1:40688378-40688397 None:intergenic 50.0%
ATCATTTGCCAAAGAGGGGC+AGG + chr4_1:40688593-40688612 None:intergenic 50.0%
! ATCTACCGAGGGTATAGTGC+TGG - chr4_1:40688699-40688718 Msa0547460:intron 50.0%
! TAGTTTGCGGCAACACGTCC+GGG + chr4_1:40678950-40678969 None:intergenic 55.0%
TTGAAATCACGCACGCGGCA+GGG + chr4_1:40679102-40679121 None:intergenic 55.0%
! GCACCGACACTACTGATCGA+AGG + chr4_1:40679497-40679516 None:intergenic 55.0%
TGGTACGGGTTCAGCTACGT+GGG - chr4_1:40679687-40679706 Msa0547460:intron 55.0%
GCCCGTGCTTTGTCTTCTGT+AGG - chr4_1:40680891-40680910 Msa0547460:intron 55.0%
CTCTCTCTCTCTCACCCCAA+CGG - chr4_1:40681243-40681262 Msa0547460:CDS 55.0%
TGCTGTTGGGAAAGAGCAGG+TGG - chr4_1:40681574-40681593 Msa0547460:CDS 55.0%
ACTGGTGGGATGCCTTCCAT+AGG + chr4_1:40682298-40682317 None:intergenic 55.0%
! CCGACTGATGGGTGAGTACA+TGG - chr4_1:40683118-40683137 Msa0547460:intron 55.0%
TTCTCTCCACGCACTGCACT+GGG + chr4_1:40683620-40683639 None:intergenic 55.0%
GCTCCAAGCAACTGAGAACC+AGG + chr4_1:40684032-40684051 None:intergenic 55.0%
GGAGCTAACGGTCGTGATGA+TGG - chr4_1:40684047-40684066 Msa0547460:intron 55.0%
! CAGAAGGCGCAGTTTGCAAC+AGG - chr4_1:40684285-40684304 Msa0547460:CDS 55.0%
TGCGCAGTTGCGCTTACAGT+CGG + chr4_1:40684538-40684557 None:intergenic 55.0%
ACTGTAAGCGCAACTGCGCA+TGG - chr4_1:40684538-40684557 Msa0547460:intron 55.0%
AGTTGCGCTTTCCGACAGTC+GGG + chr4_1:40684842-40684861 None:intergenic 55.0%
CAGTTGCGCTTTCCGACAGT+CGG + chr4_1:40684843-40684862 None:intergenic 55.0%
CACGCGTCTGTCGTTGTGTT+GGG - chr4_1:40685116-40685135 Msa0547460:intron 55.0%
ACGCGTCTGTCGTTGTGTTG+GGG - chr4_1:40685117-40685136 Msa0547460:intron 55.0%
GAGGTTGAGGTGAAGCCTGA+TGG - chr4_1:40685685-40685704 Msa0547460:intron 55.0%
AGGTGAAGCCTGATGGCTCT+TGG - chr4_1:40685692-40685711 Msa0547460:intron 55.0%
GATCCCAGTGTTAACCAGGG+TGG - chr4_1:40686042-40686061 Msa0547460:CDS 55.0%
CCACCACCCTGGTTAACACT+GGG + chr4_1:40686048-40686067 None:intergenic 55.0%
ACCACCACCCTGGTTAACAC+TGG + chr4_1:40686049-40686068 None:intergenic 55.0%
! AGTGTTAACCAGGGTGGTGG+TGG - chr4_1:40686048-40686067 Msa0547460:CDS 55.0%
! GTGTTAACCAGGGTGGTGGT+GGG - chr4_1:40686049-40686068 Msa0547460:CDS 55.0%
AACACATCTGCTCAGGTGGG+TGG - chr4_1:40686159-40686178 Msa0547460:intron 55.0%
ACACATCTGCTCAGGTGGGT+GGG - chr4_1:40686160-40686179 Msa0547460:intron 55.0%
GGGTCAACAATTCCAGGAGG+TGG + chr4_1:40686294-40686313 None:intergenic 55.0%
TTGCCTTCTGCATCTCAGGC+TGG - chr4_1:40686402-40686421 Msa0547460:intron 55.0%
TGCAGAGGCCTCTGATGCAT+TGG - chr4_1:40686452-40686471 Msa0547460:intron 55.0%
!! CCCGAAACTGCTTTGGGATC+TGG - chr4_1:40686534-40686553 Msa0547460:intron 55.0%
!! ACGACTCAGCTGGTCTTGTG+GGG + chr4_1:40686671-40686690 None:intergenic 55.0%
!! GACGACTCAGCTGGTCTTGT+GGG + chr4_1:40686672-40686691 None:intergenic 55.0%
!! AGACGACTCAGCTGGTCTTG+TGG + chr4_1:40686673-40686692 None:intergenic 55.0%
TGGACATCCCTTACTCTCGG+AGG - chr4_1:40686750-40686769 Msa0547460:intron 55.0%
ACATCCCTTACTCTCGGAGG+TGG - chr4_1:40686753-40686772 Msa0547460:intron 55.0%
AGCACCACCTCCGAGAGTAA+GGG + chr4_1:40686760-40686779 None:intergenic 55.0%
AGGGGCAGGTGCAAGCATTA+GGG + chr4_1:40688579-40688598 None:intergenic 55.0%
GTTGAAATCACGCACGCGGC+AGG + chr4_1:40679103-40679122 None:intergenic 60.0%
GTGGTACGGGTTCAGCTACG+TGG - chr4_1:40679686-40679705 Msa0547460:intron 60.0%
GGTACGGGTTCAGCTACGTG+GGG - chr4_1:40679688-40679707 Msa0547460:intron 60.0%
TACCAACCCAGTGCAGTGCG+TGG - chr4_1:40683611-40683630 Msa0547460:intron 60.0%
GTTCTCTCCACGCACTGCAC+TGG + chr4_1:40683621-40683640 None:intergenic 60.0%
GCGCAGTTGCGCTTACAGTC+GGG + chr4_1:40684537-40684556 None:intergenic 60.0%
! TCGGAAAGCGCAACTGTGCG+TGG - chr4_1:40684847-40684866 Msa0547460:CDS 60.0%
GGCTCACCGTCAGACTCCTT+TGG + chr4_1:40685079-40685098 None:intergenic 60.0%
GCACGCGTCTGTCGTTGTGT+TGG - chr4_1:40685115-40685134 Msa0547460:intron 60.0%
CGCGTCTGTCGTTGTGTTGG+GGG - chr4_1:40685118-40685137 Msa0547460:intron 60.0%
GTCTGTCGTTGTGTTGGGGG+TGG - chr4_1:40685121-40685140 Msa0547460:intron 60.0%
TCGGAGCCACTGCTGCTCAT+TGG + chr4_1:40686003-40686022 None:intergenic 60.0%
AGCAGCAGTGGCTCCGAAAG+TGG - chr4_1:40686006-40686025 Msa0547460:CDS 60.0%
GCAGTGGCTCCGAAAGTGGT+CGG - chr4_1:40686010-40686029 Msa0547460:CDS 60.0%
CAGTGGCTCCGAAAGTGGTC+GGG - chr4_1:40686011-40686030 Msa0547460:CDS 60.0%
CCCAGTGTTAACCAGGGTGG+TGG - chr4_1:40686045-40686064 Msa0547460:CDS 60.0%
CAATATGCCCACCACCACCC+TGG + chr4_1:40686059-40686078 None:intergenic 60.0%
CACATCTGCTCAGGTGGGTG+GGG - chr4_1:40686161-40686180 Msa0547460:intron 60.0%
GGTTACTCCATGCCACCTCC+TGG - chr4_1:40686279-40686298 Msa0547460:intron 60.0%
GGACCAGCCTGAGATGCAGA+AGG + chr4_1:40686408-40686427 None:intergenic 60.0%
! TCTGCATCTCAGGCTGGTCC+AGG - chr4_1:40686408-40686427 Msa0547460:intron 60.0%
AGCATCTGTCCGTCCAGCAG+AGG + chr4_1:40686577-40686596 None:intergenic 60.0%
CAGCACCACCTCCGAGAGTA+AGG + chr4_1:40686761-40686780 None:intergenic 60.0%
CTTACTCTCGGAGGTGGTGC+TGG - chr4_1:40686759-40686778 Msa0547460:intron 60.0%
!! GGTGGTGCTGGCGGTAGTAA+TGG - chr4_1:40686771-40686790 Msa0547460:intron 60.0%
GAGGGGCAGGTGCAAGCATT+AGG + chr4_1:40688580-40688599 None:intergenic 60.0%
TGCTTGCACCTGCCCCTCTT+TGG - chr4_1:40688582-40688601 Msa0547460:five_prime_UTR 60.0%
CTCCACGCACTGCACTGGGT+TGG + chr4_1:40683616-40683635 None:intergenic 65.0%
GGCTCCGAAAGTGGTCGGGA+TGG - chr4_1:40686015-40686034 Msa0547460:CDS 65.0%
! ACTCTCGGAGGTGGTGCTGG+CGG - chr4_1:40686762-40686781 Msa0547460:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 40678926 40689005 40678926 ID=Msa0547460;Name=Msa0547460
chr4_1 mRNA 40678926 40689005 40678926 ID=Msa0547460-mRNA-1;Parent=Msa0547460;Name=Msa0547460-mRNA-1;_AED=0.08;_eAED=0.08;_QI=340|1|1|1|0.93|0.94|17|573|882
chr4_1 exon 40678926 40679638 40678926 ID=Msa0547460-mRNA-1:exon:10423;Parent=Msa0547460-mRNA-1
chr4_1 exon 40681055 40682273 40681055 ID=Msa0547460-mRNA-1:exon:10422;Parent=Msa0547460-mRNA-1
chr4_1 exon 40682350 40682430 40682350 ID=Msa0547460-mRNA-1:exon:10421;Parent=Msa0547460-mRNA-1
chr4_1 exon 40682518 40682622 40682518 ID=Msa0547460-mRNA-1:exon:10420;Parent=Msa0547460-mRNA-1
chr4_1 exon 40682709 40682870 40682709 ID=Msa0547460-mRNA-1:exon:10419;Parent=Msa0547460-mRNA-1
chr4_1 exon 40683625 40683732 40683625 ID=Msa0547460-mRNA-1:exon:10418;Parent=Msa0547460-mRNA-1
chr4_1 exon 40683855 40683928 40683855 ID=Msa0547460-mRNA-1:exon:10417;Parent=Msa0547460-mRNA-1
chr4_1 exon 40684077 40684152 40684077 ID=Msa0547460-mRNA-1:exon:10416;Parent=Msa0547460-mRNA-1
chr4_1 exon 40684233 40684320 40684233 ID=Msa0547460-mRNA-1:exon:10415;Parent=Msa0547460-mRNA-1
chr4_1 exon 40684803 40684871 40684803 ID=Msa0547460-mRNA-1:exon:10414;Parent=Msa0547460-mRNA-1
chr4_1 exon 40685566 40685696 40685566 ID=Msa0547460-mRNA-1:exon:10413;Parent=Msa0547460-mRNA-1
chr4_1 exon 40685904 40686078 40685904 ID=Msa0547460-mRNA-1:exon:10412;Parent=Msa0547460-mRNA-1
chr4_1 exon 40686310 40686382 40686310 ID=Msa0547460-mRNA-1:exon:10411;Parent=Msa0547460-mRNA-1
chr4_1 exon 40686976 40687018 40686976 ID=Msa0547460-mRNA-1:exon:10410;Parent=Msa0547460-mRNA-1
chr4_1 exon 40687223 40687303 40687223 ID=Msa0547460-mRNA-1:exon:10409;Parent=Msa0547460-mRNA-1
chr4_1 exon 40688548 40688666 40688548 ID=Msa0547460-mRNA-1:exon:10408;Parent=Msa0547460-mRNA-1
chr4_1 exon 40688761 40689005 40688761 ID=Msa0547460-mRNA-1:exon:10407;Parent=Msa0547460-mRNA-1
chr4_1 five_prime_UTR 40688761 40689005 40688761 ID=Msa0547460-mRNA-1:five_prime_utr;Parent=Msa0547460-mRNA-1
chr4_1 five_prime_UTR 40688572 40688666 40688572 ID=Msa0547460-mRNA-1:five_prime_utr;Parent=Msa0547460-mRNA-1
chr4_1 CDS 40688548 40688571 40688548 ID=Msa0547460-mRNA-1:cds;Parent=Msa0547460-mRNA-1
chr4_1 CDS 40687223 40687303 40687223 ID=Msa0547460-mRNA-1:cds;Parent=Msa0547460-mRNA-1
chr4_1 CDS 40686976 40687018 40686976 ID=Msa0547460-mRNA-1:cds;Parent=Msa0547460-mRNA-1
chr4_1 CDS 40686310 40686382 40686310 ID=Msa0547460-mRNA-1:cds;Parent=Msa0547460-mRNA-1
chr4_1 CDS 40685904 40686078 40685904 ID=Msa0547460-mRNA-1:cds;Parent=Msa0547460-mRNA-1
chr4_1 CDS 40685566 40685696 40685566 ID=Msa0547460-mRNA-1:cds;Parent=Msa0547460-mRNA-1
chr4_1 CDS 40684803 40684871 40684803 ID=Msa0547460-mRNA-1:cds;Parent=Msa0547460-mRNA-1
chr4_1 CDS 40684233 40684320 40684233 ID=Msa0547460-mRNA-1:cds;Parent=Msa0547460-mRNA-1
chr4_1 CDS 40684077 40684152 40684077 ID=Msa0547460-mRNA-1:cds;Parent=Msa0547460-mRNA-1
chr4_1 CDS 40683855 40683928 40683855 ID=Msa0547460-mRNA-1:cds;Parent=Msa0547460-mRNA-1
chr4_1 CDS 40683625 40683732 40683625 ID=Msa0547460-mRNA-1:cds;Parent=Msa0547460-mRNA-1
chr4_1 CDS 40682709 40682870 40682709 ID=Msa0547460-mRNA-1:cds;Parent=Msa0547460-mRNA-1
chr4_1 CDS 40682518 40682622 40682518 ID=Msa0547460-mRNA-1:cds;Parent=Msa0547460-mRNA-1
chr4_1 CDS 40682350 40682430 40682350 ID=Msa0547460-mRNA-1:cds;Parent=Msa0547460-mRNA-1
chr4_1 CDS 40681055 40682273 40681055 ID=Msa0547460-mRNA-1:cds;Parent=Msa0547460-mRNA-1
chr4_1 CDS 40679499 40679638 40679499 ID=Msa0547460-mRNA-1:cds;Parent=Msa0547460-mRNA-1
chr4_1 three_prime_UTR 40678926 40679498 40678926 ID=Msa0547460-mRNA-1:three_prime_utr;Parent=Msa0547460-mRNA-1
Gene Sequence

>Msa0547460

ATGGATTTGGTAGCCGGTATCAAGGAAAAATTAACATATTTCCGTATAAAAGAGCTCAAGGATGTGCTGACTCAGTTAGGACTTTCAAAACAGGGAAAGAAGCAGGATCTCGTCGATCGGATATTATCCATACTCTCAGATGAGCAAGTTTCCAGAATATGGGCCAAGAAGAATGCTGTTGGGAAAGAGCAGGTGGCAAAATTGGTGGATGACACATATAGGAAAATGCAGATATCGGGAGCCACTGATCTAGCATCAAAGGGTCAGGTTGTGTCAGATAGTAGTAATGTGAAGGTTAAAGCTGAAGTTGAAGATTCCTTTCAAATTCAATCTACTACAACTACAAAGATTCGCTGTCTCTGTGGAAGTACATTGGAAACAGGGGATTTGATCAAGTGTGATGATGCAAGATGCCAAGTGTGGCAACACATCAGTTGCGTTATTATTCCAGAGAAACCTATGGAAGGCATCCCACCAGTTCCTGATAAATTTTATTGTGAACTATGTCGACTCAGTCGTGCAGACCCGTTTTGGGTTTCAGTATCTCATCCTTTGTTACCTGTAAAGTTGGCCACAACCAGTATTCCGACTGATGGTACCAACCCAGTGCAGTGCGTGGAGAGAACATTTCAACTCACAAGAGCAGACAAGGACATGGTATCAAAACAAGAATTTGATGTTGAGGCTTGGTGTATGCTTCTGAACGACAAGGTTCCATTCAGGATTCAATGGCCACAGTATACAGACCTAGCAGTTAATGGTCTTCCTATTCGAACAACTAATAGACCTGGTTCTCAGTTGCTTGGAGCTAACGGTCGTGATGATGGTCCAATTATCACGCCGCATACAAAAGACGGAATTAATAAGATTTCCTTAACAGTATGTGATGCTCGCATTTTCTGTTTAGGGGTTCGAATTGTCAGAAGGCGCAGTTTGCAACAGATCCTAAACTTAATTCCAAAGGAGTCTGACGGTGAGCCTTTTGAAGATGCTCTTGCACGCGTCTGTCGTTGTGTTGGGGGTGGAAATGCAGCTGACAATGCTGATAGCGACAGTGATTTGGAAGTGGTTTCAGATACTTTCAGTATAAGCCTTCGTTGTCCGATGAGTGGTTCAAGAATGAAGATTGCCGGAAGATTCAAACCTTGCATTCACATGGGTTGTTTTGATCTTGATGTTTTTGTGGAAATGAATCAACGGTCAAGAAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCATTGGAGAATATCATCATTGACCCTTATTTCAATCGCATCACTTCTATGATGATTAATTGCGGTGAAGATGTTACAGAGGTTGAGGTGAAGCCTGATGGCTCTTGGCGTGTTAAGGCAAAGAGTGAAAGTGAACGTCTGGATTTAGGGATTCTTGGCCAATGGCATCTTCCTAATGGATCCCTTTGTACTTCTACTGCTGGAGATATCAAGAGAGTAGAAACACTGAAGCAAGTAAAACAGGAAGGTTTTTCAGATGGACCTGCTGGTTTAAAACTTGGCATTAGGAGGAATCGCAATGGGAATTGGGAAGTCAGTAAGCCCGAGACAACAAACACCTCTTCTGGTCATATATTAAGAGAGGTTTTTGGAAATCCTGAACAAGTTGTTATTCCAATGAGCAGCAGTGGCTCCGAAAGTGGTCGGGATGGTGATGATCCCAGTGTTAACCAGGGTGGTGGTGGGCATATTGATTATTCTACTACCAATGGAATTGAGATGGATTCTCAGTCTCTCAATAATGTTGATTTAGCTCGTGGATATACTACGCATAACACATCTGCTCAGGTGGGTGGGGCAGAGATAATTGTTCTTAGCGACTCTGAAGAAGACAATGACATATTGGTGTCTCCTCCAATTGCAAATAACAACCACCAAAATGATATTGCAGATGGTTACTCCATGCCACCTCCTGGAATTGTTGACCCATACACTGAAGATCAGAATCTCGGTGGAAGTTCATGCTTGGGGCTTTTTCCTAATGAAGATGATTTTGGAATATCTTCCCTGTGGTCATTGCCTTCTGCATCTCAGGCTGGTCCAGGATTCCAATTGTTCGGTTCTGATGCAGAGGCCTCTGATGCATTGGTTCATTTGCAGCATGTTCCTATTAATTGCACCTCATCACTGAACGGTTATGCATTGGCTCCCGAAACTGCTTTGGGATCTGGCAGTCTCTTACAAGATTCCTCTGCTGGACGGACAGATGCTGACTTAAACGGTGGTTTGGTTGACAACCCATTGGCATTTGCTGGAGATGATCCCTCACTTCAGATTTTTCTCCCCACAAGACCAGCTGAGTCGTCTATGCAGAATGAATTGAGAGATCAAGCAAATGTCTCTAATGGTGTTTCCACTGAAGATTGGACATCCCTTACTCTCGGAGGTGGTGCTGGCGGTAGTAATGGTGATGCTTCCACTCAAAATGGATTGAATTCTAGACACCAAGTCCCATCCAGAGACAATGGCGCAAATACTTTGGCTGATTCTGCTTCTTTGCTTCTTGGTATGAATGATGTAAGATCTGACAGAGCAAGTAGACCAAGGTCAGGTAGTCCTTTCACATTTCCTCGCCAAAAACGTTCTGTAAGGCCCCGCTTGTACCTTTCTATTGATTCGGAATCGGAATAA
Protein sequence

>Msa0547460

MDLVAGIKEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILSILSDEQVSRIWAKKNAVGKEQVAKLVDDTYRKMQISGATDLASKGQVVSDSSNVKVKAEVEDSFQIQSTTTTKIRCLCGSTLETGDLIKCDDARCQVWQHISCVIIPEKPMEGIPPVPDKFYCELCRLSRADPFWVSVSHPLLPVKLATTSIPTDGTNPVQCVERTFQLTRADKDMVSKQEFDVEAWCMLLNDKVPFRIQWPQYTDLAVNGLPIRTTNRPGSQLLGANGRDDGPIITPHTKDGINKISLTVCDARIFCLGVRIVRRRSLQQILNLIPKESDGEPFEDALARVCRCVGGGNAADNADSDSDLEVVSDTFSISLRCPMSGSRMKIAGRFKPCIHMGCFDLDVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMINCGEDVTEVEVKPDGSWRVKAKSESERLDLGILGQWHLPNGSLCTSTAGDIKRVETLKQVKQEGFSDGPAGLKLGIRRNRNGNWEVSKPETTNTSSGHILREVFGNPEQVVIPMSSSGSESGRDGDDPSVNQGGGGHIDYSTTNGIEMDSQSLNNVDLARGYTTHNTSAQVGGAEIIVLSDSEEDNDILVSPPIANNNHQNDIADGYSMPPPGIVDPYTEDQNLGGSSCLGLFPNEDDFGISSLWSLPSASQAGPGFQLFGSDAEASDALVHLQHVPINCTSSLNGYALAPETALGSGSLLQDSSAGRTDADLNGGLVDNPLAFAGDDPSLQIFLPTRPAESSMQNELRDQANVSNGVSTEDWTSLTLGGGAGGSNGDASTQNGLNSRHQVPSRDNGANTLADSASLLLGMNDVRSDRASRPRSGSPFTFPRQKRSVRPRLYLSIDSESE*