Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652880 | XP_024635851.1 | 71.899 | 395 | 58 | 3 | 1 | 361 | 1 | 376 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652880 | A0A396ILZ2 | 71.899 | 395 | 58 | 3 | 1 | 361 | 1 | 376 | 0.0 | 547 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0652880 | Msa0764830 | 0.801492 | 8.777849e-49 | -8.615850e-47 |
| Msa0652880 | Msa0765910 | 0.832944 | 7.078574e-56 | -8.615850e-47 |
| Msa0652880 | Msa0844570 | 0.811630 | 6.359484e-51 | -8.615850e-47 |
| Msa0652880 | Msa1252140 | 0.800249 | 1.574697e-48 | -8.615850e-47 |
| Msa0652880 | Msa1372760 | 0.810272 | 1.251702e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652880 | MtrunA17_Chr3g0084341 | 71.899 | 395 | 58 | 3 | 1 | 361 | 1 | 376 | 0.0 | 547 |
| Msa0652880 | MtrunA17_Chr4g0046731 | 93.307 | 254 | 16 | 1 | 1 | 254 | 1 | 253 | 1.80e-161 | 453 |
| Msa0652880 | MtrunA17_Chr1g0169631 | 89.286 | 28 | 3 | 0 | 21 | 48 | 3 | 30 | 2.98e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652880 | AT1G50910.1 | 56.048 | 248 | 105 | 3 | 3 | 248 | 4 | 249 | 5.49e-74 | 238 |
| Msa0652880 | AT1G50910.2 | 46.939 | 98 | 48 | 3 | 153 | 248 | 11 | 106 | 1.40e-16 | 80.5 |
Find 75 sgRNAs with CRISPR-Local
Find 379 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGTCAAGGTAAGGATTT+TGG | 0.228577 | 4_3:+60681727 | Msa0652880:CDS |
| CTTCAAAAGATGCTGGAAAT+AGG | 0.288940 | 4_3:-60678301 | None:intergenic |
| AACACTATTGAGTCGATTCT+TGG | 0.308082 | 4_3:+60681787 | Msa0652880:CDS |
| AAAAGACGAATCTTCTGTTT+TGG | 0.324292 | 4_3:-60678643 | None:intergenic |
| TAATCATTATCATCACTAAC+AGG | 0.331891 | 4_3:-60681634 | None:intergenic |
| CAATTTCATTTCCCTTGAAA+TGG | 0.336771 | 4_3:-60682930 | None:intergenic |
| TGTTTCATGACAGCTTAAAA+AGG | 0.336884 | 4_3:+60679318 | Msa0652880:intron |
| ACCGGTGGCAAACTCCATTC+TGG | 0.338719 | 4_3:+60682811 | Msa0652880:CDS |
| GCTAGCGCGTCTACGAGTTT+TGG | 0.353240 | 4_3:+60681124 | Msa0652880:CDS |
| TACGTCGCAGCCTTCAAAAT+TGG | 0.355440 | 4_3:-60680305 | None:intergenic |
| TACATGCACGTTGCTCTCTC+TGG | 0.390292 | 4_3:-60682773 | None:intergenic |
| ATCGCAAATTGATGAACTTA+AGG | 0.397367 | 4_3:+60682624 | Msa0652880:CDS |
| ACACTATTGAGTCGATTCTT+GGG | 0.399329 | 4_3:+60681788 | Msa0652880:CDS |
| ATGTTACGTTAGACTGTGTC+TGG | 0.406384 | 4_3:+60681656 | Msa0652880:CDS |
| CTCAATTGTACTGGCGGAGC+TGG | 0.408201 | 4_3:+60677031 | Msa0652880:five_prime_UTR |
| CCACTTTGTGGTATTAATGT+AGG | 0.410097 | 4_3:-60682868 | None:intergenic |
| GGCTAAGGCATTCCATTTCA+AGG | 0.436220 | 4_3:+60682918 | Msa0652880:CDS |
| GGGACTTTCTGTGACAATCA+TGG | 0.457633 | 4_3:+60681097 | Msa0652880:CDS |
| AATAACTCATGAGGGAATAG+AGG | 0.478056 | 4_3:+60681460 | Msa0652880:CDS |
| CTGGTGAAGATTCGCAGAAA+GGG | 0.490114 | 4_3:-60682699 | None:intergenic |
| ATTAAATTGCAAGGATTCGA+TGG | 0.492656 | 4_3:+60678161 | Msa0652880:exon |
| GGATTTAAATCTTCTACAGT+TGG | 0.499368 | 4_3:+60678567 | Msa0652880:CDS |
| ATGTGGAATACTTGAAAGAT+TGG | 0.505870 | 4_3:+60678245 | Msa0652880:CDS |
| AACACAGAAATACCACTTTG+TGG | 0.509726 | 4_3:-60682880 | None:intergenic |
| TGCATACCTTCAAAAGATGC+TGG | 0.509973 | 4_3:-60678308 | None:intergenic |
| GTATTATCACAGTCTTCAAC+CGG | 0.520277 | 4_3:+60682793 | Msa0652880:CDS |
| AACTAGCAATGCCAAGGCTA+AGG | 0.520839 | 4_3:+60682903 | Msa0652880:CDS |
| CCACATTCTTCGAACCAGAA+TGG | 0.522587 | 4_3:-60682825 | None:intergenic |
| TCTGGAATGAAGTTTGCCAT+TGG | 0.526954 | 4_3:-60682755 | None:intergenic |
| ATCCTTGCAATTTAATCCAA+CGG | 0.534772 | 4_3:-60678154 | None:intergenic |
| ACCAGAATGGAGTTTGCCAC+CGG | 0.535099 | 4_3:-60682812 | None:intergenic |
| AATGCATGCAAGTTGTTCTC+TGG | 0.535486 | 4_3:-60682718 | None:intergenic |
| GAAATGGAATGCCTTAGCCT+TGG | 0.535584 | 4_3:-60682914 | None:intergenic |
| TATAGTTGACATCTGATGCT+TGG | 0.538584 | 4_3:-60681765 | None:intergenic |
| TCTGGTGAAGATTCGCAGAA+AGG | 0.540252 | 4_3:-60682700 | None:intergenic |
| AGATGAGAGGAAGCATAAAA+CGG | 0.541050 | 4_3:+60681699 | Msa0652880:CDS |
| ACAATGGAGCTGCGAAAGCA+TGG | 0.545280 | 4_3:-60678220 | None:intergenic |
| GGAGAATGAAAGTCAAGGTA+AGG | 0.546177 | 4_3:+60681720 | Msa0652880:CDS |
| GTAGATCATAGTTCTGCCGT+TGG | 0.547170 | 4_3:+60678138 | Msa0652880:intron |
| CACTATTGAGTCGATTCTTG+GGG | 0.548086 | 4_3:+60681789 | Msa0652880:CDS |
| TCGCAGCTCCATTGTGAATG+TGG | 0.550317 | 4_3:+60678228 | Msa0652880:CDS |
| ATCGATTAAAATAACTCATG+AGG | 0.550502 | 4_3:+60681451 | Msa0652880:CDS |
| TCATGTTTCAATGTTATCAA+AGG | 0.550576 | 4_3:+60678613 | Msa0652880:CDS |
| TGCCGTTGGATTAAATTGCA+AGG | 0.554378 | 4_3:+60678152 | Msa0652880:five_prime_UTR |
| CAAGTATTCCACATTCACAA+TGG | 0.564121 | 4_3:-60678236 | None:intergenic |
| GCTAAGGCATTCCATTTCAA+GGG | 0.570396 | 4_3:+60682919 | Msa0652880:CDS |
| TTATCACAGTCTTTAACCAA+TGG | 0.572740 | 4_3:+60682739 | Msa0652880:CDS |
| GTTTGGTCATTAGGTGCGGA+GGG | 0.573872 | 4_3:+60678546 | Msa0652880:intron |
| GAGCTGGTCGTAGACCGTCC+AGG | 0.576633 | 4_3:+60677047 | Msa0652880:five_prime_UTR |
| CCATTCTGGTTCGAAGAATG+TGG | 0.587267 | 4_3:+60682825 | Msa0652880:CDS |
| TTAAATTGCAAGGATTCGAT+GGG | 0.589402 | 4_3:+60678162 | Msa0652880:exon |
| TGTGTTAACTAGCAATGCCA+AGG | 0.602047 | 4_3:+60682897 | Msa0652880:CDS |
| TCGATTAAAATAACTCATGA+GGG | 0.605330 | 4_3:+60681452 | Msa0652880:CDS |
| GGAGACTGTGTTTAATAGCG+AGG | 0.607786 | 4_3:+60682645 | Msa0652880:CDS |
| GGTTTGGTCATTAGGTGCGG+AGG | 0.608260 | 4_3:+60678545 | Msa0652880:intron |
| TACTGAATTTGAAACAGTCG+AGG | 0.609403 | 4_3:+60678185 | Msa0652880:CDS |
| GAAAATGCCTTGATGAAAAG+CGG | 0.616892 | 4_3:+60679342 | Msa0652880:CDS |
| ATAAGTATATATTAGATGAG+AGG | 0.617541 | 4_3:+60681686 | Msa0652880:CDS |
| ACTGTGTTTAATAGCGAGGA+GGG | 0.627932 | 4_3:+60682649 | Msa0652880:CDS |
| TGTTGTTTATTTGTTCAACA+CGG | 0.629376 | 4_3:+60681403 | Msa0652880:CDS |
| GACTGTGTTTAATAGCGAGG+AGG | 0.629980 | 4_3:+60682648 | Msa0652880:CDS |
| TCTACAGTTGGCAAACGTAG+AGG | 0.644321 | 4_3:+60678579 | Msa0652880:CDS |
| GTGTTTAATAGCGAGGAGGG+AGG | 0.647890 | 4_3:+60682652 | Msa0652880:CDS |
| AAAACGGAGAATGAAAGTCA+AGG | 0.654556 | 4_3:+60681715 | Msa0652880:CDS |
| CCTACATTAATACCACAAAG+TGG | 0.657522 | 4_3:+60682868 | Msa0652880:CDS |
| ATCTGCACGACTGCTAGCAG+AGG | 0.657918 | 4_3:+60679388 | Msa0652880:CDS |
| ACTATTGAGTCGATTCTTGG+GGG | 0.665684 | 4_3:+60681790 | Msa0652880:CDS |
| GATGCTGGAAATAGGAAGAG+CGG | 0.678399 | 4_3:-60678293 | None:intergenic |
| AATTTGAAACAGTCGAGGGG+CGG | 0.679861 | 4_3:+60678190 | Msa0652880:CDS |
| TTATCACAGTCTTCAACCGG+TGG | 0.681132 | 4_3:+60682796 | Msa0652880:CDS |
| ACTGAATTTGAAACAGTCGA+GGG | 0.690372 | 4_3:+60678186 | Msa0652880:CDS |
| CTGAATTTGAAACAGTCGAG+GGG | 0.699477 | 4_3:+60678187 | Msa0652880:CDS |
| CAAAACAAAGAAAACCTGGA+CGG | 0.709712 | 4_3:-60677061 | None:intergenic |
| GCTGGAAATAGGAAGAGCGG+CGG | 0.714092 | 4_3:-60678290 | None:intergenic |
| AATCATTATCATCACTAACA+GGG | 0.715718 | 4_3:-60681633 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTATTTTATTTTTTT+TGG | + | chr4_3:60680122-60680141 | Msa0652880:intron | 0.0% |
| !!! | TTAATTTTTTAAGAGTAATT+GGG | + | chr4_3:60678432-60678451 | Msa0652880:intron | 10.0% |
| !! | CAAAAAAAAAAAAAAAAAAC+TGG | - | chr4_3:60680468-60680487 | None:intergenic | 10.0% |
| !! | AATTATAATACATTAAACAT+GGG | - | chr4_3:60681166-60681185 | None:intergenic | 10.0% |
| !! | AAATTATAATACATTAAACA+TGG | - | chr4_3:60681167-60681186 | None:intergenic | 10.0% |
| !! | ATGAAAATAAATTGTATAAG+TGG | - | chr4_3:60677390-60677409 | None:intergenic | 15.0% |
| !! | ACTCTTAAAAAATTAACTAA+GGG | - | chr4_3:60678428-60678447 | None:intergenic | 15.0% |
| !! | TACTCTTAAAAAATTAACTA+AGG | - | chr4_3:60678429-60678448 | None:intergenic | 15.0% |
| !!! | GTTAATTTTTTAAGAGTAAT+TGG | + | chr4_3:60678431-60678450 | Msa0652880:intron | 15.0% |
| !!! | TAGGTTTATATTAGTATTTT+TGG | + | chr4_3:60678673-60678692 | Msa0652880:intron | 15.0% |
| !!! | TTTTTTTTGATAGGTAATAA+AGG | + | chr4_3:60680479-60680498 | Msa0652880:intron | 15.0% |
| !! | ATGATATTGTAAAAAAATGA+AGG | - | chr4_3:60680578-60680597 | None:intergenic | 15.0% |
| !!! | ATTATAATTTAAGTTAGTGA+AGG | + | chr4_3:60681177-60681196 | Msa0652880:intron | 15.0% |
| !! | ATGTATTGTTTGATAAGTTA+GGG | + | chr4_3:60677147-60677166 | Msa0652880:intron | 20.0% |
| !! | ACTTATATAAGTTTATCTAC+TGG | - | chr4_3:60677780-60677799 | None:intergenic | 20.0% |
| !! | TCTTAAAAAATTAACTAAGG+GGG | - | chr4_3:60678426-60678445 | None:intergenic | 20.0% |
| !! | CTCTTAAAAAATTAACTAAG+GGG | - | chr4_3:60678427-60678446 | None:intergenic | 20.0% |
| !!! | ATAATAACATCACTTTTTGA+TGG | - | chr4_3:60679260-60679279 | None:intergenic | 20.0% |
| !! | TCAAAAAGTGATGTTATTAT+AGG | + | chr4_3:60679260-60679279 | Msa0652880:intron | 20.0% |
| !! | AAAAACACTAATTAATCTGT+TGG | - | chr4_3:60679558-60679577 | None:intergenic | 20.0% |
| !!! | TAGTGTTTTTTTTCTTCTAA+AGG | + | chr4_3:60679568-60679587 | Msa0652880:intron | 20.0% |
| !! | TAAAAATAGTATAAGATGCT+CGG | - | chr4_3:60680110-60680129 | None:intergenic | 20.0% |
| !! | TCTAATCATAGATTTGATAT+TGG | + | chr4_3:60680212-60680231 | Msa0652880:intron | 20.0% |
| !! | TTCATTTATACTATATTCGT+TGG | + | chr4_3:60680369-60680388 | Msa0652880:intron | 20.0% |
| !! | TCATTTATACTATATTCGTT+GGG | + | chr4_3:60680370-60680389 | Msa0652880:intron | 20.0% |
| !! | TATTATGAAGGATAAAAGAA+AGG | - | chr4_3:60680445-60680464 | None:intergenic | 20.0% |
| !! | AAAAAAAACTGGTATTATGA+AGG | - | chr4_3:60680457-60680476 | None:intergenic | 20.0% |
| !! | ATTACAAATCTTTGTAGAAA+TGG | + | chr4_3:60680738-60680757 | Msa0652880:intron | 20.0% |
| !! | TTACAAATCTTTGTAGAAAT+GGG | + | chr4_3:60680739-60680758 | Msa0652880:intron | 20.0% |
| !!! | TGAATCATTTTTCCATAATT+TGG | + | chr4_3:60680808-60680827 | Msa0652880:intron | 20.0% |
| !!! | TGATATAGTCTTTTTTCTTT+TGG | + | chr4_3:60680851-60680870 | Msa0652880:intron | 20.0% |
| !!! | CATATTTTTTCTGTATACTT+TGG | + | chr4_3:60680898-60680917 | Msa0652880:intron | 20.0% |
| !!! | TCAAGGAAACAAATTTTATA+TGG | - | chr4_3:60681030-60681049 | None:intergenic | 20.0% |
| !! | ATAAGTATATATTAGATGAG+AGG | + | chr4_3:60681686-60681705 | Msa0652880:CDS | 20.0% |
| !!! | AGAAGAAATGAGTATTTTAT+GGG | - | chr4_3:60681821-60681840 | None:intergenic | 20.0% |
| !!! | TAGAAGAAATGAGTATTTTA+TGG | - | chr4_3:60681822-60681841 | None:intergenic | 20.0% |
| !! | TTATTTAGTTACTAGCATTA+TGG | - | chr4_3:60682232-60682251 | None:intergenic | 20.0% |
| !!! | TATTTTGATGTGATTAAACA+TGG | + | chr4_3:60682486-60682505 | Msa0652880:intron | 20.0% |
| !! | TAAAAAACAAAAGATGACAA+AGG | + | chr4_3:60682954-60682973 | Msa0652880:CDS | 20.0% |
| !! | AAAAAACAAAAGATGACAAA+GGG | + | chr4_3:60682955-60682974 | Msa0652880:CDS | 20.0% |
| ! | CAACACATGAATATTAATCA+TGG | - | chr4_3:60677104-60677123 | None:intergenic | 25.0% |
| ! | CATGTATTGTTTGATAAGTT+AGG | + | chr4_3:60677146-60677165 | Msa0652880:intron | 25.0% |
| !!! | ATAAAAAGTGCTTTGTTAGT+TGG | - | chr4_3:60677287-60677306 | None:intergenic | 25.0% |
| !!! | AAGTCAAACTGTTTTTGTAT+AGG | + | chr4_3:60677426-60677445 | Msa0652880:intron | 25.0% |
| ! | AAAACATAAGTTCTCTCAAA+TGG | + | chr4_3:60677506-60677525 | Msa0652880:intron | 25.0% |
| !!! | AGAATTGATTCTGACATTTT+TGG | + | chr4_3:60677582-60677601 | Msa0652880:intron | 25.0% |
| ! | TCAAGTAAAATCAATTCTAG+AGG | - | chr4_3:60677633-60677652 | None:intergenic | 25.0% |
| !!! | CTTATATAAGTTGATCCAAA+AGG | + | chr4_3:60677789-60677808 | Msa0652880:intron | 25.0% |
| ! | GCTTATTTGATTAAATCATC+AGG | + | chr4_3:60677985-60678004 | Msa0652880:intron | 25.0% |
| ! | CACTTTAACCTTTCATATTA+TGG | + | chr4_3:60678045-60678064 | Msa0652880:intron | 25.0% |
| ! | TCATGTTTCAATGTTATCAA+AGG | + | chr4_3:60678613-60678632 | Msa0652880:CDS | 25.0% |
| !! | TGGTTAAAGGTATGTAAATA+TGG | + | chr4_3:60679091-60679110 | Msa0652880:intron | 25.0% |
| ! | AAGGCAAATAATAAAACGAA+GGG | - | chr4_3:60679210-60679229 | None:intergenic | 25.0% |
| ! | GCTTGGATACTTATAAAAAA+GGG | - | chr4_3:60679887-60679906 | None:intergenic | 25.0% |
| ! | TGCTTGGATACTTATAAAAA+AGG | - | chr4_3:60679888-60679907 | None:intergenic | 25.0% |
| ! | TCTATGATTAGAATCTGATA+GGG | - | chr4_3:60680204-60680223 | None:intergenic | 25.0% |
| ! | ATCTATGATTAGAATCTGAT+AGG | - | chr4_3:60680205-60680224 | None:intergenic | 25.0% |
| ! | CATCAATTGAAATAAGAGAA+AGG | - | chr4_3:60680259-60680278 | None:intergenic | 25.0% |
| ! | AATATGCATTTAGTACCATT+TGG | - | chr4_3:60680520-60680539 | None:intergenic | 25.0% |
| ! | TTCAGAAATTCAAAACTTTG+AGG | - | chr4_3:60680792-60680811 | None:intergenic | 25.0% |
| !!! | TCATTTTTCCATAATTTGGT+TGG | + | chr4_3:60680812-60680831 | Msa0652880:intron | 25.0% |
| ! | ATCTCACTATTAAATAGTCA+AGG | - | chr4_3:60681047-60681066 | None:intergenic | 25.0% |
| !! | AAATTGGAACTTGTTTAATG+TGG | + | chr4_3:60681213-60681232 | Msa0652880:intron | 25.0% |
| !! | TGTTGTTTATTTGTTCAACA+CGG | + | chr4_3:60681403-60681422 | Msa0652880:CDS | 25.0% |
| ! | ATCGATTAAAATAACTCATG+AGG | + | chr4_3:60681451-60681470 | Msa0652880:CDS | 25.0% |
| ! | TCGATTAAAATAACTCATGA+GGG | + | chr4_3:60681452-60681471 | Msa0652880:CDS | 25.0% |
| ! | AATCATTATCATCACTAACA+GGG | - | chr4_3:60681636-60681655 | None:intergenic | 25.0% |
| ! | TAATCATTATCATCACTAAC+AGG | - | chr4_3:60681637-60681656 | None:intergenic | 25.0% |
| ! | TGAATGTTAATTACAATGCA+TGG | + | chr4_3:60682089-60682108 | Msa0652880:intron | 25.0% |
| ! | AAACAACTAAAGTGGTTATT+TGG | + | chr4_3:60682149-60682168 | Msa0652880:intron | 25.0% |
| !!! | TTGAACTATGCCTTTTAATT+GGG | - | chr4_3:60682395-60682414 | None:intergenic | 25.0% |
| !! | ACATATCAGAATTTTATCCA+TGG | - | chr4_3:60682594-60682613 | None:intergenic | 25.0% |
| ! | TAAAATTCTGATATGTTGAC+AGG | + | chr4_3:60682598-60682617 | Msa0652880:intron | 25.0% |
| ! | AAAAACAAAAGATGACAAAG+GGG | + | chr4_3:60682956-60682975 | Msa0652880:CDS | 25.0% |
| AGAACAAAACAAAGAAAACC+TGG | - | chr4_3:60677068-60677087 | None:intergenic | 30.0% | |
| TACTCTTATTATGTCGTACT+TGG | + | chr4_3:60677179-60677198 | Msa0652880:intron | 30.0% | |
| ! | TATTATGTCGTACTTGGTTT+TGG | + | chr4_3:60677185-60677204 | Msa0652880:intron | 30.0% |
| ! | AAGTTCAATGTGTTTGGAAT+TGG | + | chr4_3:60677232-60677251 | Msa0652880:intron | 30.0% |
| ! | CTTTTTATTGTGAGACACTT+TGG | + | chr4_3:60677299-60677318 | Msa0652880:intron | 30.0% |
| !! | GCTGTTTTCATAAGATATCA+TGG | + | chr4_3:60677455-60677474 | Msa0652880:intron | 30.0% |
| TAGAACTTATCCCTTAAAAC+TGG | - | chr4_3:60677823-60677842 | None:intergenic | 30.0% | |
| TATTGCATGTGTGATCTATT+AGG | + | chr4_3:60677854-60677873 | Msa0652880:intron | 30.0% | |
| !!! | TGCTTTTTAGTTTACAGTCT+TGG | + | chr4_3:60677912-60677931 | Msa0652880:intron | 30.0% |
| AGTTTACAGTCTTGGAATTT+CGG | + | chr4_3:60677920-60677939 | Msa0652880:intron | 30.0% | |
| ATCCTTGCAATTTAATCCAA+CGG | - | chr4_3:60678157-60678176 | None:intergenic | 30.0% | |
| ATTAAATTGCAAGGATTCGA+TGG | + | chr4_3:60678161-60678180 | Msa0652880:exon | 30.0% | |
| TTAAATTGCAAGGATTCGAT+GGG | + | chr4_3:60678162-60678181 | Msa0652880:exon | 30.0% | |
| ATGTGGAATACTTGAAAGAT+TGG | + | chr4_3:60678245-60678264 | Msa0652880:CDS | 30.0% | |
| GGGTAAAAAGAATAGGAAAA+AGG | - | chr4_3:60678406-60678425 | None:intergenic | 30.0% | |
| GGATTTAAATCTTCTACAGT+TGG | + | chr4_3:60678567-60678586 | Msa0652880:CDS | 30.0% | |
| ! | AAAAGACGAATCTTCTGTTT+TGG | - | chr4_3:60678646-60678665 | None:intergenic | 30.0% |
| TGAATCTTTGAGCATAACTT+TGG | - | chr4_3:60678705-60678724 | None:intergenic | 30.0% | |
| TTCAATTAAGATAGCTGAGA+AGG | + | chr4_3:60678734-60678753 | Msa0652880:intron | 30.0% | |
| ! | TTGATGTCAATTTGAAACAG+TGG | - | chr4_3:60678820-60678839 | None:intergenic | 30.0% |
| AATATTCATGCAAGGAAAAG+AGG | + | chr4_3:60678930-60678949 | Msa0652880:intron | 30.0% | |
| TGAATAATGGTCTATGGTAT+TGG | - | chr4_3:60679058-60679077 | None:intergenic | 30.0% | |
| GAAGGCAAATAATAAAACGA+AGG | - | chr4_3:60679211-60679230 | None:intergenic | 30.0% | |
| CAACAGAAATACATTTCAGA+AGG | - | chr4_3:60679229-60679248 | None:intergenic | 30.0% | |
| TGTTTCATGACAGCTTAAAA+AGG | + | chr4_3:60679318-60679337 | Msa0652880:intron | 30.0% | |
| !! | AAAAATTCCGCTTTTCATCA+AGG | - | chr4_3:60679352-60679371 | None:intergenic | 30.0% |
| !!! | TGATGAAAAGCGGAATTTTT+TGG | + | chr4_3:60679352-60679371 | Msa0652880:CDS | 30.0% |
| !!! | AATTTTTTGGAGCGTCTTTT+AGG | + | chr4_3:60679365-60679384 | Msa0652880:CDS | 30.0% |
| TTATAAAAAAGGGCTACCTA+CGG | - | chr4_3:60679877-60679896 | None:intergenic | 30.0% | |
| TTTATAAGTATCCAAGCACT+TGG | + | chr4_3:60679890-60679909 | Msa0652880:intron | 30.0% | |
| ATCAAGTAGTATGCAATGTT+CGG | - | chr4_3:60679972-60679991 | None:intergenic | 30.0% | |
| !! | CCTTGATAGCTAGATTTTAA+GGG | - | chr4_3:60680058-60680077 | None:intergenic | 30.0% |
| CCTTAAAATCTAGCTATCAA+GGG | + | chr4_3:60680056-60680075 | Msa0652880:intron | 30.0% | |
| CTTAAAATCTAGCTATCAAG+GGG | + | chr4_3:60680057-60680076 | Msa0652880:intron | 30.0% | |
| TTAAAATCTAGCTATCAAGG+GGG | + | chr4_3:60680058-60680077 | Msa0652880:intron | 30.0% | |
| TATACTATATTCGTTGGGTT+TGG | + | chr4_3:60680375-60680394 | Msa0652880:intron | 30.0% | |
| TACGAATTGATCTTACCAAA+TGG | + | chr4_3:60680502-60680521 | Msa0652880:intron | 30.0% | |
| AATATCATCTGAACAACGTT+TGG | + | chr4_3:60680590-60680609 | Msa0652880:intron | 30.0% | |
| ACCATGGTAACATTAACTAA+GGG | - | chr4_3:60680942-60680961 | None:intergenic | 30.0% | |
| AACCATGGTAACATTAACTA+AGG | - | chr4_3:60680943-60680962 | None:intergenic | 30.0% | |
| !!! | TTTGCTCGATCCTTTTTTAT+GGG | + | chr4_3:60681077-60681096 | Msa0652880:CDS | 30.0% |
| AGGTTTCATCATAGTCAAAT+TGG | + | chr4_3:60681197-60681216 | Msa0652880:intron | 30.0% | |
| !!! | CGATTGCTTATTTTTAGACA+GGG | - | chr4_3:60681435-60681454 | None:intergenic | 30.0% |
| !!! | TCGATTGCTTATTTTTAGAC+AGG | - | chr4_3:60681436-60681455 | None:intergenic | 30.0% |
| ACATATAGCAGAGAATTTAG+TGG | - | chr4_3:60681502-60681521 | None:intergenic | 30.0% | |
| AATAAAGAAGACAGCGATAA+TGG | - | chr4_3:60681847-60681866 | None:intergenic | 30.0% | |
| TTCACAAAGCTTGTATTCAA+TGG | + | chr4_3:60681896-60681915 | Msa0652880:intron | 30.0% | |
| TCACAAAGCTTGTATTCAAT+GGG | + | chr4_3:60681897-60681916 | Msa0652880:intron | 30.0% | |
| ! | TGAATCAATGAAGTACTACA+TGG | + | chr4_3:60681997-60682016 | Msa0652880:intron | 30.0% |
| TAACCACTTTAGTTGTTTGT+TGG | - | chr4_3:60682147-60682166 | None:intergenic | 30.0% | |
| ! | ACTAACTACTACTAGGTTTT+GGG | - | chr4_3:60682286-60682305 | None:intergenic | 30.0% |
| ! | AACTAACTACTACTAGGTTT+TGG | - | chr4_3:60682287-60682306 | None:intergenic | 30.0% |
| TTAGTTAGCAAGCAGATAAA+AGG | + | chr4_3:60682301-60682320 | Msa0652880:intron | 30.0% | |
| TAATAATGCTGAGCATCATT+TGG | + | chr4_3:60682330-60682349 | Msa0652880:intron | 30.0% | |
| GATTAGAAAACTTTGAGCAT+CGG | + | chr4_3:60682362-60682381 | Msa0652880:intron | 30.0% | |
| ! | CTTGAACTATGCCTTTTAAT+TGG | - | chr4_3:60682396-60682415 | None:intergenic | 30.0% |
| CAAAGGAGAGAAAAAATGTT+AGG | - | chr4_3:60682422-60682441 | None:intergenic | 30.0% | |
| ATCGCAAATTGATGAACTTA+AGG | + | chr4_3:60682624-60682643 | Msa0652880:CDS | 30.0% | |
| ! | AAGGGACTTTTGTAGTAAAA+CGG | - | chr4_3:60682684-60682703 | None:intergenic | 30.0% |
| TTATCACAGTCTTTAACCAA+TGG | + | chr4_3:60682739-60682758 | Msa0652880:CDS | 30.0% | |
| CAATTTCATTTCCCTTGAAA+TGG | - | chr4_3:60682933-60682952 | None:intergenic | 30.0% | |
| ! | GCCAGTACAATTGAGTTTTT+CGG | - | chr4_3:60677026-60677045 | None:intergenic | 35.0% |
| GAAAAACTCAATTGTACTGG+CGG | + | chr4_3:60677025-60677044 | Msa0652880:five_prime_UTR | 35.0% | |
| CAAAACAAAGAAAACCTGGA+CGG | - | chr4_3:60677064-60677083 | None:intergenic | 35.0% | |
| ! | AGCTTCAAGTTCAATGTGTT+TGG | + | chr4_3:60677226-60677245 | Msa0652880:intron | 35.0% |
| TCATGGAGAGTTTACTGTTT+AGG | + | chr4_3:60677472-60677491 | Msa0652880:intron | 35.0% | |
| CATGGAGAGTTTACTGTTTA+GGG | + | chr4_3:60677473-60677492 | Msa0652880:intron | 35.0% | |
| ! | CTCAAATGGTGTGTATGTTT+TGG | + | chr4_3:60677520-60677539 | Msa0652880:intron | 35.0% |
| !!! | TGTTTTGGTTCTACTTCTAG+AGG | + | chr4_3:60677535-60677554 | Msa0652880:intron | 35.0% |
| !!! | GTTTTGGTTCTACTTCTAGA+GGG | + | chr4_3:60677536-60677555 | Msa0652880:intron | 35.0% |
| !!! | TTTTGGTTCTACTTCTAGAG+GGG | + | chr4_3:60677537-60677556 | Msa0652880:intron | 35.0% |
| AGAGGGGTCAAAATTGATTA+TGG | + | chr4_3:60677553-60677572 | Msa0652880:intron | 35.0% | |
| TCTGACTAAATGTGAACTGA+AGG | - | chr4_3:60677725-60677744 | None:intergenic | 35.0% | |
| AGAATCACATACACTACAAG+TGG | + | chr4_3:60677742-60677761 | Msa0652880:intron | 35.0% | |
| ATCCCTTAAAACTGGCAAAA+GGG | - | chr4_3:60677815-60677834 | None:intergenic | 35.0% | |
| TATCCCTTAAAACTGGCAAA+AGG | - | chr4_3:60677816-60677835 | None:intergenic | 35.0% | |
| GTTTACAGTCTTGGAATTTC+GGG | + | chr4_3:60677921-60677940 | Msa0652880:intron | 35.0% | |
| CTTCAGCATGGTAAACATAA+GGG | - | chr4_3:60677957-60677976 | None:intergenic | 35.0% | |
| ACTTCAGCATGGTAAACATA+AGG | - | chr4_3:60677958-60677977 | None:intergenic | 35.0% | |
| !! | AAGCTTGTTAAACTTCAGCA+TGG | - | chr4_3:60677969-60677988 | None:intergenic | 35.0% |
| GACAAGTGCCATAATATGAA+AGG | - | chr4_3:60678056-60678075 | None:intergenic | 35.0% | |
| ! | TACTGAATTTGAAACAGTCG+AGG | + | chr4_3:60678185-60678204 | Msa0652880:CDS | 35.0% |
| ! | ACTGAATTTGAAACAGTCGA+GGG | + | chr4_3:60678186-60678205 | Msa0652880:CDS | 35.0% |
| CAAGTATTCCACATTCACAA+TGG | - | chr4_3:60678239-60678258 | None:intergenic | 35.0% | |
| CTTCAAAAGATGCTGGAAAT+AGG | - | chr4_3:60678304-60678323 | None:intergenic | 35.0% | |
| ! | CTATTTCCAGCATCTTTTGA+AGG | + | chr4_3:60678302-60678321 | Msa0652880:CDS | 35.0% |
| AGTGTTCAATGACGTGAAAT+TGG | + | chr4_3:60678355-60678374 | Msa0652880:intron | 35.0% | |
| ACTAAGGGGGTAAAAAGAAT+AGG | - | chr4_3:60678413-60678432 | None:intergenic | 35.0% | |
| !! | AAGTCATTCTGAGTTTTGTG+TGG | + | chr4_3:60678524-60678543 | Msa0652880:intron | 35.0% |
| !! | ATTCTGAGTTTTGTGTGGTT+TGG | + | chr4_3:60678529-60678548 | Msa0652880:intron | 35.0% |
| !!! | TTTTGTGTGGTTTGGTCATT+AGG | + | chr4_3:60678537-60678556 | Msa0652880:intron | 35.0% |
| !! | AGAAGATTCGTCTTTTAGAG+AGG | + | chr4_3:60678650-60678669 | Msa0652880:CDS | 35.0% |
| ! | GACATCAACACTCTTTTATG+TGG | + | chr4_3:60678832-60678851 | Msa0652880:intron | 35.0% |
| CATGAATATTGAAACAGGCA+AGG | - | chr4_3:60678920-60678939 | None:intergenic | 35.0% | |
| CCTTGCATGAATATTGAAAC+AGG | - | chr4_3:60678925-60678944 | None:intergenic | 35.0% | |
| CCTGTTTCAATATTCATGCA+AGG | + | chr4_3:60678922-60678941 | Msa0652880:intron | 35.0% | |
| CAAGCTTGAATAATGGTCTA+TGG | - | chr4_3:60679064-60679083 | None:intergenic | 35.0% | |
| CAACATGCAAGCTTGAATAA+TGG | - | chr4_3:60679071-60679090 | None:intergenic | 35.0% | |
| TTATTCAAGCTTGCATGTTG+TGG | + | chr4_3:60679071-60679090 | Msa0652880:intron | 35.0% | |
| AATTACAGTCCTCTGTCAAA+TGG | + | chr4_3:60679136-60679155 | Msa0652880:intron | 35.0% | |
| TATTATAGGTCTCGTCTTGT+TGG | + | chr4_3:60679274-60679293 | Msa0652880:intron | 35.0% | |
| GAAAATGCCTTGATGAAAAG+CGG | + | chr4_3:60679342-60679361 | Msa0652880:CDS | 35.0% | |
| ACACATTAATTGACGTTGAG+AGG | + | chr4_3:60679591-60679610 | Msa0652880:intron | 35.0% | |
| CACATTAATTGACGTTGAGA+GGG | + | chr4_3:60679592-60679611 | Msa0652880:intron | 35.0% | |
| ! | CCTTCATAGCCAACTTTTAA+GGG | - | chr4_3:60679688-60679707 | None:intergenic | 35.0% |
| CCTTAAAAGTTGGCTATGAA+GGG | + | chr4_3:60679686-60679705 | Msa0652880:intron | 35.0% | |
| ! | TTGAGGAATTTGGGGTATTA+TGG | - | chr4_3:60680018-60680037 | None:intergenic | 35.0% |
| AATACCCCAAATTCCTCAAA+TGG | + | chr4_3:60680019-60680038 | Msa0652880:intron | 35.0% | |
| CAATCCATTTGAGGAATTTG+GGG | - | chr4_3:60680026-60680045 | None:intergenic | 35.0% | |
| CCAATCCATTTGAGGAATTT+GGG | - | chr4_3:60680027-60680046 | None:intergenic | 35.0% | |
| TCCAATCCATTTGAGGAATT+TGG | - | chr4_3:60680028-60680047 | None:intergenic | 35.0% | |
| CCCTTAAAATCTAGCTATCA+AGG | + | chr4_3:60680055-60680074 | Msa0652880:intron | 35.0% | |
| !! | CCCTTGATAGCTAGATTTTA+AGG | - | chr4_3:60680059-60680078 | None:intergenic | 35.0% |
| AAATAGTATAAGATGCTCGG+TGG | - | chr4_3:60680107-60680126 | None:intergenic | 35.0% | |
| TGAAATAAGAGAAAGGACTC+TGG | - | chr4_3:60680252-60680271 | None:intergenic | 35.0% | |
| ! | GATGGTTGAACCAATTTTGA+AGG | + | chr4_3:60680295-60680314 | Msa0652880:intron | 35.0% |
| ATCCTTCTACTAGTATCATG+TGG | + | chr4_3:60680327-60680346 | Msa0652880:intron | 35.0% | |
| AACCACATGATACTAGTAGA+AGG | - | chr4_3:60680332-60680351 | None:intergenic | 35.0% | |
| TTTATACCATGATCAAGCCA+TGG | - | chr4_3:60680409-60680428 | None:intergenic | 35.0% | |
| ATCTTTGTAGAAATGGGAAG+AGG | + | chr4_3:60680745-60680764 | Msa0652880:intron | 35.0% | |
| AACGATGACCAACCAAATTA+TGG | - | chr4_3:60680823-60680842 | None:intergenic | 35.0% | |
| CCATGGTAACATTAACTAAG+GGG | - | chr4_3:60680941-60680960 | None:intergenic | 35.0% | |
| CATGATACTAGAGTTAACCA+TGG | - | chr4_3:60680958-60680977 | None:intergenic | 35.0% | |
| !!! | GTTTGCTCGATCCTTTTTTA+TGG | + | chr4_3:60681076-60681095 | Msa0652880:CDS | 35.0% |
| CACAGAAAGTCCCATAAAAA+AGG | - | chr4_3:60681090-60681109 | None:intergenic | 35.0% | |
| CATCAAGTAATATCTGCACA+GGG | - | chr4_3:60681385-60681404 | None:intergenic | 35.0% | |
| ACATCAAGTAATATCTGCAC+AGG | - | chr4_3:60681386-60681405 | None:intergenic | 35.0% | |
| AATAACTCATGAGGGAATAG+AGG | + | chr4_3:60681460-60681479 | Msa0652880:CDS | 35.0% | |
| CTGATATGTACTACTGAATC+AGG | + | chr4_3:60681594-60681613 | Msa0652880:intron | 35.0% | |
| ! | AGATGAGAGGAAGCATAAAA+CGG | + | chr4_3:60681699-60681718 | Msa0652880:CDS | 35.0% |
| AAAACGGAGAATGAAAGTCA+AGG | + | chr4_3:60681715-60681734 | Msa0652880:CDS | 35.0% | |
| ! | GAAAGTCAAGGTAAGGATTT+TGG | + | chr4_3:60681727-60681746 | Msa0652880:CDS | 35.0% |
| TATAGTTGACATCTGATGCT+TGG | - | chr4_3:60681768-60681787 | None:intergenic | 35.0% | |
| ! | AACACTATTGAGTCGATTCT+TGG | + | chr4_3:60681787-60681806 | Msa0652880:CDS | 35.0% |
| ! | ACACTATTGAGTCGATTCTT+GGG | + | chr4_3:60681788-60681807 | Msa0652880:CDS | 35.0% |
| TATGTAGAAGATATCACACC+TGG | + | chr4_3:60682038-60682057 | Msa0652880:intron | 35.0% | |
| AATTTCAGACTTCAACCTTG+AGG | + | chr4_3:60682177-60682196 | Msa0652880:intron | 35.0% | |
| TTAATAACTGCAGCTCACTA+GGG | + | chr4_3:60682256-60682275 | Msa0652880:intron | 35.0% | |
| CTTGCTAACTAACTACTACT+AGG | - | chr4_3:60682293-60682312 | None:intergenic | 35.0% | |
| !!! | ACATTTTTTCTCTCCTTTGC+TGG | + | chr4_3:60682423-60682442 | Msa0652880:intron | 35.0% |
| ATGACAAATGAAACCAGCAA+AGG | - | chr4_3:60682439-60682458 | None:intergenic | 35.0% | |
| ! | AATTTTATCCATGGCATGAG+GGG | - | chr4_3:60682585-60682604 | None:intergenic | 35.0% |
| ! | GAATTTTATCCATGGCATGA+GGG | - | chr4_3:60682586-60682605 | None:intergenic | 35.0% |
| ! | AGAATTTTATCCATGGCATG+AGG | - | chr4_3:60682587-60682606 | None:intergenic | 35.0% |
| GTATTATCACAGTCTTCAAC+CGG | + | chr4_3:60682793-60682812 | Msa0652880:CDS | 35.0% | |
| CCACTTTGTGGTATTAATGT+AGG | - | chr4_3:60682871-60682890 | None:intergenic | 35.0% | |
| CCTACATTAATACCACAAAG+TGG | + | chr4_3:60682868-60682887 | Msa0652880:CDS | 35.0% | |
| AACACAGAAATACCACTTTG+TGG | - | chr4_3:60682883-60682902 | None:intergenic | 35.0% | |
| GCCGAAAAACTCAATTGTAC+TGG | + | chr4_3:60677022-60677041 | Msa0652880:five_prime_UTR | 40.0% | |
| GGGGTCAAAATTGATTATGG+AGG | + | chr4_3:60677556-60677575 | Msa0652880:intron | 40.0% | |
| TGAACTGAAGGTAAAGTGAG+CGG | - | chr4_3:60677713-60677732 | None:intergenic | 40.0% | |
| TGTAACTACTTGTGTGTGTG+TGG | + | chr4_3:60678019-60678038 | Msa0652880:intron | 40.0% | |
| CATGATTCATGCGTAACTGT+TGG | - | chr4_3:60678090-60678109 | None:intergenic | 40.0% | |
| TGCCGTTGGATTAAATTGCA+AGG | + | chr4_3:60678152-60678171 | Msa0652880:five_prime_UTR | 40.0% | |
| ! | CTGAATTTGAAACAGTCGAG+GGG | + | chr4_3:60678187-60678206 | Msa0652880:CDS | 40.0% |
| TGCATACCTTCAAAAGATGC+TGG | - | chr4_3:60678311-60678330 | None:intergenic | 40.0% | |
| TAAGAGTAATTGGGTTTGCG+TGG | + | chr4_3:60678441-60678460 | Msa0652880:intron | 40.0% | |
| GTTTGCGTGGAAACTTGAAT+AGG | + | chr4_3:60678454-60678473 | Msa0652880:intron | 40.0% | |
| !! | GATTCGTCTTTTAGAGAGGT+AGG | + | chr4_3:60678654-60678673 | Msa0652880:intron | 40.0% |
| ! | CAACACTCTTTTATGTGGCT+AGG | + | chr4_3:60678837-60678856 | Msa0652880:intron | 40.0% |
| AGCTTGCATGTTGTGGTTAA+AGG | + | chr4_3:60679078-60679097 | Msa0652880:intron | 40.0% | |
| GATACTCAAAGTCGTACTCT+AGG | - | chr4_3:60679536-60679555 | None:intergenic | 40.0% | |
| ATACTACTCAATGTGGGACT+TGG | - | chr4_3:60679638-60679657 | None:intergenic | 40.0% | |
| AAGTCCCACATTGAGTAGTA+TGG | + | chr4_3:60679637-60679656 | Msa0652880:intron | 40.0% | |
| AGTCCCACATTGAGTAGTAT+GGG | + | chr4_3:60679638-60679657 | Msa0652880:intron | 40.0% | |
| !! | CATAGCCAACTTTTAAGGGA+GGG | - | chr4_3:60679684-60679703 | None:intergenic | 40.0% |
| !! | TCATAGCCAACTTTTAAGGG+AGG | - | chr4_3:60679685-60679704 | None:intergenic | 40.0% |
| CCCTTAAAAGTTGGCTATGA+AGG | + | chr4_3:60679685-60679704 | Msa0652880:intron | 40.0% | |
| ! | CCCTTCATAGCCAACTTTTA+AGG | - | chr4_3:60679689-60679708 | None:intergenic | 40.0% |
| TGCTCAATGGAGTATGTAAG+TGG | - | chr4_3:60679723-60679742 | None:intergenic | 40.0% | |
| AGTCTCACATCGAGTAGAAT+GGG | - | chr4_3:60679747-60679766 | None:intergenic | 40.0% | |
| AAGTCTCACATCGAGTAGAA+TGG | - | chr4_3:60679748-60679767 | None:intergenic | 40.0% | |
| ATAGGAACCTGGGTATTATG+GGG | - | chr4_3:60679776-60679795 | None:intergenic | 40.0% | |
| GATAGGAACCTGGGTATTAT+GGG | - | chr4_3:60679777-60679796 | None:intergenic | 40.0% | |
| TGATAGGAACCTGGGTATTA+TGG | - | chr4_3:60679778-60679797 | None:intergenic | 40.0% | |
| !!! | CCTTGATAGCTGGCTTTTAA+GGG | - | chr4_3:60679920-60679939 | None:intergenic | 40.0% |
| CCTTAAAAGCCAGCTATCAA+GGG | + | chr4_3:60679918-60679937 | Msa0652880:intron | 40.0% | |
| AAGTAGTATGCAATGTTCGG+TGG | - | chr4_3:60679969-60679988 | None:intergenic | 40.0% | |
| CCCAAATTCCTCAAATGGAT+TGG | + | chr4_3:60680024-60680043 | Msa0652880:intron | 40.0% | |
| AGTGTTCTCCAATCCATTTG+AGG | - | chr4_3:60680035-60680054 | None:intergenic | 40.0% | |
| ! | TGTTCTGTTTTCCATGCAGA+TGG | + | chr4_3:60680277-60680296 | Msa0652880:intron | 40.0% |
| ! | AATTGGTTCAACCATCTGCA+TGG | - | chr4_3:60680291-60680310 | None:intergenic | 40.0% |
| ! | ATTCGTTGGGTTTGGTTGAT+TGG | + | chr4_3:60680383-60680402 | Msa0652880:intron | 40.0% |
| ATGACTGACAGACATGTAGA+GGG | - | chr4_3:60680720-60680739 | None:intergenic | 40.0% | |
| AATGACTGACAGACATGTAG+AGG | - | chr4_3:60680721-60680740 | None:intergenic | 40.0% | |
| CCCCTTAGTTAATGTTACCA+TGG | + | chr4_3:60680938-60680957 | Msa0652880:intron | 40.0% | |
| CAAGATACATGCACAATCAC+AGG | - | chr4_3:60681345-60681364 | None:intergenic | 40.0% | |
| AAGTAATATCTGCACAGGGA+GGG | - | chr4_3:60681381-60681400 | None:intergenic | 40.0% | |
| ATGTTACGTTAGACTGTGTC+TGG | + | chr4_3:60681656-60681675 | Msa0652880:CDS | 40.0% | |
| GGAGAATGAAAGTCAAGGTA+AGG | + | chr4_3:60681720-60681739 | Msa0652880:CDS | 40.0% | |
| ! | AGTCAAGGTAAGGATTTTGG+TGG | + | chr4_3:60681730-60681749 | Msa0652880:CDS | 40.0% |
| ! | CACTATTGAGTCGATTCTTG+GGG | + | chr4_3:60681789-60681808 | Msa0652880:CDS | 40.0% |
| ! | ACTATTGAGTCGATTCTTGG+GGG | + | chr4_3:60681790-60681809 | Msa0652880:CDS | 40.0% |
| AGAAGATATCACACCTGGAA+CGG | + | chr4_3:60682043-60682062 | Msa0652880:intron | 40.0% | |
| TACAATGCATGGCGAAACTA+AGG | + | chr4_3:60682100-60682119 | Msa0652880:intron | 40.0% | |
| ACAATGCATGGCGAAACTAA+GGG | + | chr4_3:60682101-60682120 | Msa0652880:intron | 40.0% | |
| !! | AGGGTTAGGTGTTGAATAAG+TGG | + | chr4_3:60682120-60682139 | Msa0652880:intron | 40.0% |
| GGTCCAACAAACAACTAAAG+TGG | + | chr4_3:60682141-60682160 | Msa0652880:intron | 40.0% | |
| AGACTTCAACCTTGAGGATA+AGG | + | chr4_3:60682183-60682202 | Msa0652880:intron | 40.0% | |
| GTTAATAACTGCAGCTCACT+AGG | + | chr4_3:60682255-60682274 | Msa0652880:intron | 40.0% | |
| CGGCTTGATTCCCAATTAAA+AGG | + | chr4_3:60682382-60682401 | Msa0652880:intron | 40.0% | |
| ! | ATTTTATCCATGGCATGAGG+GGG | - | chr4_3:60682584-60682603 | None:intergenic | 40.0% |
| ACTGTGTTTAATAGCGAGGA+GGG | + | chr4_3:60682649-60682668 | Msa0652880:CDS | 40.0% | |
| AATGCATGCAAGTTGTTCTC+TGG | - | chr4_3:60682721-60682740 | None:intergenic | 40.0% | |
| ! | TCTGGAATGAAGTTTGCCAT+TGG | - | chr4_3:60682758-60682777 | None:intergenic | 40.0% |
| TGTGTTAACTAGCAATGCCA+AGG | + | chr4_3:60682897-60682916 | Msa0652880:CDS | 40.0% | |
| ! | GCTAAGGCATTCCATTTCAA+GGG | + | chr4_3:60682919-60682938 | Msa0652880:CDS | 40.0% |
| !! | TGAGACACTTTGGCTCTGTT+TGG | + | chr4_3:60677309-60677328 | Msa0652880:intron | 45.0% |
| ! | AAACTGGCAAAAGGGCCTTT+TGG | - | chr4_3:60677807-60677826 | None:intergenic | 45.0% |
| ! | AGGCCCTTTTGCCAGTTTTA+AGG | + | chr4_3:60677809-60677828 | Msa0652880:intron | 45.0% |
| !! | GGCCCTTTTGCCAGTTTTAA+GGG | + | chr4_3:60677810-60677829 | Msa0652880:intron | 45.0% |
| ! | GTAGATCATAGTTCTGCCGT+TGG | + | chr4_3:60678138-60678157 | Msa0652880:intron | 45.0% |
| ! | AATTTGAAACAGTCGAGGGG+CGG | + | chr4_3:60678190-60678209 | Msa0652880:CDS | 45.0% |
| GATGCTGGAAATAGGAAGAG+CGG | - | chr4_3:60678296-60678315 | None:intergenic | 45.0% | |
| GACGTGAAATTGGTTACTGC+TGG | + | chr4_3:60678365-60678384 | Msa0652880:intron | 45.0% | |
| !! | TGTGGTTTGGTCATTAGGTG+CGG | + | chr4_3:60678542-60678561 | Msa0652880:intron | 45.0% |
| TCTACAGTTGGCAAACGTAG+AGG | + | chr4_3:60678579-60678598 | Msa0652880:CDS | 45.0% | |
| ATGTGGCTAGGACAATGACA+AGG | + | chr4_3:60678849-60678868 | Msa0652880:intron | 45.0% | |
| AAGAGTGAGCCATTTGACAG+AGG | - | chr4_3:60679148-60679167 | None:intergenic | 45.0% | |
| TCGTTGAGTTTCTACTGTGC+TGG | + | chr4_3:60679484-60679503 | Msa0652880:intron | 45.0% | |
| CAAAGTCGTACTCTAGGCAT+GGG | - | chr4_3:60679530-60679549 | None:intergenic | 45.0% | |
| TCAAAGTCGTACTCTAGGCA+TGG | - | chr4_3:60679531-60679550 | None:intergenic | 45.0% | |
| AATTGACGTTGAGAGGGACT+TGG | + | chr4_3:60679598-60679617 | Msa0652880:intron | 45.0% | |
| ATTGACGTTGAGAGGGACTT+GGG | + | chr4_3:60679599-60679618 | Msa0652880:intron | 45.0% | |
| TGAGAGGGACTTGGGTATTA+TGG | + | chr4_3:60679607-60679626 | Msa0652880:intron | 45.0% | |
| GTCCCACATTGAGTAGTATG+GGG | + | chr4_3:60679639-60679658 | Msa0652880:intron | 45.0% | |
| CACCCCATACTACTCAATGT+GGG | - | chr4_3:60679644-60679663 | None:intergenic | 45.0% | |
| GAGAACCCTCCCTTAAAAGT+TGG | + | chr4_3:60679676-60679695 | Msa0652880:intron | 45.0% | |
| GAGTAGAATGGGATGCTCAA+TGG | - | chr4_3:60679736-60679755 | None:intergenic | 45.0% | |
| TTGACAACCCCATAATACCC+AGG | + | chr4_3:60679766-60679785 | Msa0652880:intron | 45.0% | |
| !! | TGGTGTTGTGATAGGAACCT+GGG | - | chr4_3:60679786-60679805 | None:intergenic | 45.0% |
| !! | CTTAGAGGTGGTGTTGTGAT+AGG | - | chr4_3:60679794-60679813 | None:intergenic | 45.0% |
| GAAACTTTACTCGGCCTGTT+TGG | + | chr4_3:60679842-60679861 | Msa0652880:intron | 45.0% | |
| !!! | GATAGCTGGCTTTTAAGGGA+GGG | - | chr4_3:60679916-60679935 | None:intergenic | 45.0% |
| !!! | TGATAGCTGGCTTTTAAGGG+AGG | - | chr4_3:60679917-60679936 | None:intergenic | 45.0% |
| CCCTTAAAAGCCAGCTATCA+AGG | + | chr4_3:60679917-60679936 | Msa0652880:intron | 45.0% | |
| !!! | CCCTTGATAGCTGGCTTTTA+AGG | - | chr4_3:60679921-60679940 | None:intergenic | 45.0% |
| ! | CATTCTTCTCCCTTGATAGC+TGG | - | chr4_3:60679930-60679949 | None:intergenic | 45.0% |
| CATCCCATACTGCTTGATGT+GGG | + | chr4_3:60680152-60680171 | Msa0652880:intron | 45.0% | |
| AGTCCCACATCAAGCAGTAT+GGG | - | chr4_3:60680158-60680177 | None:intergenic | 45.0% | |
| AAGTCCCACATCAAGCAGTA+TGG | - | chr4_3:60680159-60680178 | None:intergenic | 45.0% | |
| ATACTGCTTGATGTGGGACT+TGG | + | chr4_3:60680158-60680177 | Msa0652880:intron | 45.0% | |
| TACTGCTTGATGTGGGACTT+GGG | + | chr4_3:60680159-60680178 | Msa0652880:intron | 45.0% | |
| TACGTCGCAGCCTTCAAAAT+TGG | - | chr4_3:60680308-60680327 | None:intergenic | 45.0% | |
| GGGACTTTCTGTGACAATCA+TGG | + | chr4_3:60681097-60681116 | Msa0652880:CDS | 45.0% | |
| AATGTGGAACACTGTTGCTG+AGG | + | chr4_3:60681229-60681248 | Msa0652880:intron | 45.0% | |
| CAAGTAATATCTGCACAGGG+AGG | - | chr4_3:60681382-60681401 | None:intergenic | 45.0% | |
| AGCAGATGTTGCAGCTAAAG+AGG | + | chr4_3:60682556-60682575 | Msa0652880:intron | 45.0% | |
| GGAGACTGTGTTTAATAGCG+AGG | + | chr4_3:60682645-60682664 | Msa0652880:CDS | 45.0% | |
| GACTGTGTTTAATAGCGAGG+AGG | + | chr4_3:60682648-60682667 | Msa0652880:CDS | 45.0% | |
| CTGGTGAAGATTCGCAGAAA+GGG | - | chr4_3:60682702-60682721 | None:intergenic | 45.0% | |
| TCTGGTGAAGATTCGCAGAA+AGG | - | chr4_3:60682703-60682722 | None:intergenic | 45.0% | |
| TTATCACAGTCTTCAACCGG+TGG | + | chr4_3:60682796-60682815 | Msa0652880:CDS | 45.0% | |
| CCACATTCTTCGAACCAGAA+TGG | - | chr4_3:60682828-60682847 | None:intergenic | 45.0% | |
| !! | CCATTCTGGTTCGAAGAATG+TGG | + | chr4_3:60682825-60682844 | Msa0652880:CDS | 45.0% |
| AACTAGCAATGCCAAGGCTA+AGG | + | chr4_3:60682903-60682922 | Msa0652880:CDS | 45.0% | |
| GAAATGGAATGCCTTAGCCT+TGG | - | chr4_3:60682917-60682936 | None:intergenic | 45.0% | |
| ! | GGCTAAGGCATTCCATTTCA+AGG | + | chr4_3:60682918-60682937 | Msa0652880:CDS | 45.0% |
| !!! | TTTTTTTTTTTTTTTTTGAT+AGG | + | chr4_3:60680470-60680489 | Msa0652880:intron | 5.0% |
| ACAATGGAGCTGCGAAAGCA+TGG | - | chr4_3:60678223-60678242 | None:intergenic | 50.0% | |
| TCGCAGCTCCATTGTGAATG+TGG | + | chr4_3:60678228-60678247 | Msa0652880:CDS | 50.0% | |
| GTTTGGTCATTAGGTGCGGA+GGG | + | chr4_3:60678546-60678565 | Msa0652880:intron | 50.0% | |
| CGTACTCTAGGCATGGGAAA+AGG | - | chr4_3:60679524-60679543 | None:intergenic | 50.0% | |
| GCACCCCATACTACTCAATG+TGG | - | chr4_3:60679645-60679664 | None:intergenic | 50.0% | |
| !! | GTGGTGTTGTGATAGGAACC+TGG | - | chr4_3:60679787-60679806 | None:intergenic | 50.0% |
| TTTCGCGGAGTGCAATTGTC+GGG | - | chr4_3:60679826-60679845 | None:intergenic | 50.0% | |
| GTTTCGCGGAGTGCAATTGT+CGG | - | chr4_3:60679827-60679846 | None:intergenic | 50.0% | |
| GCACTCCGCGAAACTTTACT+CGG | + | chr4_3:60679833-60679852 | Msa0652880:intron | 50.0% | |
| ACAGGCCGAGTAAAGTTTCG+CGG | - | chr4_3:60679841-60679860 | None:intergenic | 50.0% | |
| AAAAAGGGCTACCTACGGAG+AGG | - | chr4_3:60679872-60679891 | None:intergenic | 50.0% | |
| CCACATCAAGCAGTATGGGA+TGG | - | chr4_3:60680154-60680173 | None:intergenic | 50.0% | |
| CCATCCCATACTGCTTGATG+TGG | + | chr4_3:60680151-60680170 | Msa0652880:intron | 50.0% | |
| ! | TGGGTTTGGTTGATTGGCCA+TGG | + | chr4_3:60680389-60680408 | Msa0652880:intron | 50.0% |
| ! | GATTGGCCATGGCTTGATCA+TGG | + | chr4_3:60680400-60680419 | Msa0652880:intron | 50.0% |
| GCATGGCGAAACTAAGGGTT+AGG | + | chr4_3:60682106-60682125 | Msa0652880:intron | 50.0% | |
| CCTTGAGGATAAGGATCTCG+CGG | + | chr4_3:60682192-60682211 | Msa0652880:intron | 50.0% | |
| TAACTGCAGCTCACTAGGGT+TGG | + | chr4_3:60682260-60682279 | Msa0652880:intron | 50.0% | |
| CATCTGCTTCACCTCTCTCT+GGG | - | chr4_3:60682544-60682563 | None:intergenic | 50.0% | |
| ACATCTGCTTCACCTCTCTC+TGG | - | chr4_3:60682545-60682564 | None:intergenic | 50.0% | |
| GTGTTTAATAGCGAGGAGGG+AGG | + | chr4_3:60682652-60682671 | Msa0652880:CDS | 50.0% | |
| TACATGCACGTTGCTCTCTC+TGG | - | chr4_3:60682776-60682795 | None:intergenic | 50.0% | |
| ACCAGAATGGAGTTTGCCAC+CGG | - | chr4_3:60682815-60682834 | None:intergenic | 50.0% | |
| ! | CTCAATTGTACTGGCGGAGC+TGG | + | chr4_3:60677031-60677050 | Msa0652880:five_prime_UTR | 55.0% |
| GCTGGAAATAGGAAGAGCGG+CGG | - | chr4_3:60678293-60678312 | None:intergenic | 55.0% | |
| ! | GGTTTGGTCATTAGGTGCGG+AGG | + | chr4_3:60678545-60678564 | Msa0652880:intron | 55.0% |
| ATCTGCACGACTGCTAGCAG+AGG | + | chr4_3:60679388-60679407 | Msa0652880:CDS | 55.0% | |
| ! | GTATGGGGTGCTCAAGTGCT+TGG | + | chr4_3:60679654-60679673 | Msa0652880:intron | 55.0% |
| TACGGAGAGGCTGACCAAAC+AGG | - | chr4_3:60679859-60679878 | None:intergenic | 55.0% | |
| TGTTTGGTCAGCCTCTCCGT+AGG | + | chr4_3:60679858-60679877 | Msa0652880:intron | 55.0% | |
| TTAAGGGAGGGCCAAGTGCT+TGG | - | chr4_3:60679904-60679923 | None:intergenic | 55.0% | |
| ! | GCTAGCGCGTCTACGAGTTT+TGG | + | chr4_3:60681124-60681143 | Msa0652880:CDS | 55.0% |
| GATATCACACCTGGAACGGC+AGG | + | chr4_3:60682047-60682066 | Msa0652880:intron | 55.0% | |
| TCTCTTCAACCTGCCGTTCC+AGG | - | chr4_3:60682059-60682078 | None:intergenic | 55.0% | |
| CCGCGAGATCCTTATCCTCA+AGG | - | chr4_3:60682195-60682214 | None:intergenic | 55.0% | |
| TGAGGATAAGGATCTCGCGG+AGG | + | chr4_3:60682195-60682214 | Msa0652880:intron | 55.0% | |
| GATAAGGATCTCGCGGAGGA+GGG | + | chr4_3:60682199-60682218 | Msa0652880:intron | 55.0% | |
| ATAAGGATCTCGCGGAGGAG+GGG | + | chr4_3:60682200-60682219 | Msa0652880:intron | 55.0% | |
| GACCAACTTGACCCAGAGAG+AGG | + | chr4_3:60682530-60682549 | Msa0652880:intron | 55.0% | |
| CACCTCTCTCTGGGTCAAGT+TGG | - | chr4_3:60682535-60682554 | None:intergenic | 55.0% | |
| ACCGGTGGCAAACTCCATTC+TGG | + | chr4_3:60682811-60682830 | Msa0652880:CDS | 55.0% | |
| GGGACGTCAGCTCTTAGAGG+TGG | - | chr4_3:60679806-60679825 | None:intergenic | 60.0% | |
| GTCGGGACGTCAGCTCTTAG+AGG | - | chr4_3:60679809-60679828 | None:intergenic | 60.0% | |
| GGATAAGGATCTCGCGGAGG+AGG | + | chr4_3:60682198-60682217 | Msa0652880:intron | 60.0% | |
| AGAGGATCCCCCTCATGCCA+TGG | + | chr4_3:60682574-60682593 | Msa0652880:intron | 60.0% | |
| GAGCTGGTCGTAGACCGTCC+AGG | + | chr4_3:60677047-60677066 | Msa0652880:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 60676935 | 60682999 | 60676935 | ID=Msa0652880;Name=Msa0652880 |
| chr4_3 | mRNA | 60676935 | 60682999 | 60676935 | ID=Msa0652880-mRNA-1;Parent=Msa0652880;Name=Msa0652880-mRNA-1;_AED=0.22;_eAED=0.27;_QI=172|0.87|0.88|1|0.62|0.66|9|0|375 |
| chr4_3 | exon | 60676935 | 60677068 | 60676935 | ID=Msa0652880-mRNA-1:exon:16497;Parent=Msa0652880-mRNA-1 |
| chr4_3 | exon | 60678142 | 60678323 | 60678142 | ID=Msa0652880-mRNA-1:exon:16498;Parent=Msa0652880-mRNA-1 |
| chr4_3 | exon | 60678559 | 60678671 | 60678559 | ID=Msa0652880-mRNA-1:exon:16499;Parent=Msa0652880-mRNA-1 |
| chr4_3 | exon | 60679331 | 60679409 | 60679331 | ID=Msa0652880-mRNA-1:exon:16500;Parent=Msa0652880-mRNA-1 |
| chr4_3 | exon | 60680296 | 60680324 | 60680296 | ID=Msa0652880-mRNA-1:exon:16501;Parent=Msa0652880-mRNA-1 |
| chr4_3 | exon | 60681061 | 60681154 | 60681061 | ID=Msa0652880-mRNA-1:exon:16502;Parent=Msa0652880-mRNA-1 |
| chr4_3 | exon | 60681392 | 60681481 | 60681392 | ID=Msa0652880-mRNA-1:exon:16503;Parent=Msa0652880-mRNA-1 |
| chr4_3 | exon | 60681616 | 60681811 | 60681616 | ID=Msa0652880-mRNA-1:exon:16504;Parent=Msa0652880-mRNA-1 |
| chr4_3 | exon | 60682620 | 60682999 | 60682620 | ID=Msa0652880-mRNA-1:exon:16505;Parent=Msa0652880-mRNA-1 |
| chr4_3 | five_prime_UTR | 60676935 | 60677068 | 60676935 | ID=Msa0652880-mRNA-1:five_prime_utr;Parent=Msa0652880-mRNA-1 |
| chr4_3 | five_prime_UTR | 60678142 | 60678179 | 60678142 | ID=Msa0652880-mRNA-1:five_prime_utr;Parent=Msa0652880-mRNA-1 |
| chr4_3 | CDS | 60678180 | 60678323 | 60678180 | ID=Msa0652880-mRNA-1:cds;Parent=Msa0652880-mRNA-1 |
| chr4_3 | CDS | 60678559 | 60678671 | 60678559 | ID=Msa0652880-mRNA-1:cds;Parent=Msa0652880-mRNA-1 |
| chr4_3 | CDS | 60679331 | 60679409 | 60679331 | ID=Msa0652880-mRNA-1:cds;Parent=Msa0652880-mRNA-1 |
| chr4_3 | CDS | 60680296 | 60680324 | 60680296 | ID=Msa0652880-mRNA-1:cds;Parent=Msa0652880-mRNA-1 |
| chr4_3 | CDS | 60681061 | 60681154 | 60681061 | ID=Msa0652880-mRNA-1:cds;Parent=Msa0652880-mRNA-1 |
| chr4_3 | CDS | 60681392 | 60681481 | 60681392 | ID=Msa0652880-mRNA-1:cds;Parent=Msa0652880-mRNA-1 |
| chr4_3 | CDS | 60681616 | 60681811 | 60681616 | ID=Msa0652880-mRNA-1:cds;Parent=Msa0652880-mRNA-1 |
| chr4_3 | CDS | 60682620 | 60682999 | 60682620 | ID=Msa0652880-mRNA-1:cds;Parent=Msa0652880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
