AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0765910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0765910 MtrunA17_Chr5g0418081 89.404 151 6 1 1 141 1 151 1.48e-95 272
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0765910 AT1G26660.1 51.333 150 63 1 1 140 1 150 6.49e-49 154
Msa0765910 AT1G26660.2 44.571 175 62 1 1 140 1 175 1.73e-45 146

Find 36 sgRNAs with CRISPR-Local

Find 440 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGAAAGTACCAGTTTAATT+TGG 0.139711 5_2:+27250627 None:intergenic
CGAAAGTACCAGTTTAATTT+GGG 0.310369 5_2:+27250628 None:intergenic
ACAAATATGTGTTGTGTATT+GGG 0.324130 5_2:+27254773 None:intergenic
TTTGTTAATGTTTCTGTTAA+CGG 0.349458 5_2:+27249544 None:intergenic
CACAAATATGTGTTGTGTAT+TGG 0.387605 5_2:+27254772 None:intergenic
AAATATCAAAATCTCCGTTC+TGG 0.390804 5_2:+27249750 None:intergenic
AGAGATGCAATATTTCATAA+AGG 0.403794 5_2:+27249633 None:intergenic
AATCAAAGCCCAAATTAAAC+TGG 0.407072 5_2:-27250636 Msa0765910:intron
TTTAAACTTCATAGAGAAAA+GGG 0.419027 5_2:-27254705 Msa0765910:CDS
CTTTAAACTTCATAGAGAAA+AGG 0.422552 5_2:-27254706 Msa0765910:CDS
CTGAGAACTATGGTCAATCT+TGG 0.430993 5_2:-27255283 Msa0765910:CDS
ACCTGATCTTCTTCATGTTA+CGG 0.431406 5_2:-27255900 Msa0765910:CDS
CAACACATATTTGTGGATAT+AGG 0.432464 5_2:-27254764 Msa0765910:CDS
GATTCCATGTGGAGTTTACC+TGG 0.442171 5_2:-27254736 Msa0765910:CDS
AAATTCTAACATAAGTAATT+CGG 0.443134 5_2:+27249715 None:intergenic
TCAAAATCTCCGTTCTGGTA+AGG 0.444234 5_2:+27249755 None:intergenic
TCTGGTAAGGGTTTCTCAGC+TGG 0.445514 5_2:+27249768 None:intergenic
TGGTAACGCTATTCTTCTCT+AGG 0.454954 5_2:+27255308 None:intergenic
CAAAATCTCCGTTCTGGTAA+GGG 0.467609 5_2:+27249756 None:intergenic
CGTTACCAGTCTGAGAACTA+TGG 0.494311 5_2:-27255293 Msa0765910:CDS
GTCTAAATGCAGGTTTGTGA+AGG 0.496060 5_2:-27249813 Msa0765910:intron
GCCGTAACATGAAGAAGATC+AGG 0.500893 5_2:+27255899 None:intergenic
TTAATGTTTCTGTTAACGGT+TGG 0.513813 5_2:+27249548 None:intergenic
CATATTTGTGGATATAGGCA+TGG 0.529826 5_2:-27254759 Msa0765910:CDS
CAATACACAACACATATTTG+TGG 0.545294 5_2:-27254771 Msa0765910:CDS
TGTGTATTGCAGGCAGATAG+AGG 0.562643 5_2:-27250681 Msa0765910:intron
TCTAAATGCAGGTTTGTGAA+GGG 0.571040 5_2:-27249812 Msa0765910:intron
ATATTTGTGGATATAGGCAT+GGG 0.572746 5_2:-27254758 Msa0765910:CDS
TATGGTCAATCTTGGCTCTG+AGG 0.604686 5_2:-27255275 Msa0765910:CDS
CTGAGAAACCCTTACCAGAA+CGG 0.607409 5_2:-27249764 Msa0765910:CDS
GAAGTTTAAAGCTTCAGACC+AGG 0.615102 5_2:+27254718 None:intergenic
ATTGACCATAGTTCTCAGAC+TGG 0.615714 5_2:+27255288 None:intergenic
TTCTTCATGTTACGGCTCAG+AGG 0.630366 5_2:-27255892 Msa0765910:intron
CAGACCAGGTAAACTCCACA+TGG 0.645057 5_2:+27254732 None:intergenic
AAAGGGAAGAAAAGATCACA+AGG 0.677027 5_2:-27254688 Msa0765910:intron
TATAGGCATGGGATTCCATG+TGG 0.700388 5_2:-27254747 Msa0765910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTGTAATATAAACATA+TGG + chr5_2:27253068-27253087 None:intergenic 10.0%
!! TGTAAAAACTTATTATTATT+TGG + chr5_2:27255663-27255682 None:intergenic 10.0%
!! TTCATAAAAAAATCAAGAAA+AGG + chr5_2:27250365-27250384 None:intergenic 15.0%
!!! AAGTCTTATTGTTTATAATA+TGG + chr5_2:27250482-27250501 None:intergenic 15.0%
!! TTTAATGTCATCAATTTATT+TGG + chr5_2:27252804-27252823 None:intergenic 15.0%
!! ATTATGATAATAAGACAAAT+GGG + chr5_2:27252893-27252912 None:intergenic 15.0%
!! AATTATGATAATAAGACAAA+TGG + chr5_2:27252894-27252913 None:intergenic 15.0%
!! TAATATAACAATATCTTAAG+TGG + chr5_2:27253325-27253344 None:intergenic 15.0%
!! ATCATAAAATCAAAATAGAA+TGG + chr5_2:27253509-27253528 None:intergenic 15.0%
!!! TTCTATTTTGATTTTATGAT+TGG - chr5_2:27253509-27253528 Msa0765910:intron 15.0%
!!! TTTTATTAGATGATAATTGA+AGG + chr5_2:27254706-27254725 None:intergenic 15.0%
!! TTAATAAAAACATCTTATTC+AGG + chr5_2:27255225-27255244 None:intergenic 15.0%
!! AAATTCTAACATAAGTAATT+CGG + chr5_2:27255787-27255806 None:intergenic 15.0%
!!! TACTTTGTAGATTTTATTCT+TGG - chr5_2:27249639-27249658 Msa0765910:three_prime_UTR 20.0%
!! AAAAAAGAGATTTAATTGTG+CGG + chr5_2:27250643-27250662 None:intergenic 20.0%
!! TTTAAACTTCATAGAGAAAA+GGG - chr5_2:27250794-27250813 Msa0765910:intron 20.0%
!!! TAATTTTTACAGCTTCAATA+AGG + chr5_2:27250864-27250883 None:intergenic 20.0%
!! TAAAAATTAATCTAGCACAA+GGG - chr5_2:27250875-27250894 Msa0765910:intron 20.0%
!!! AATTACTGTATTTTCTGTTA+TGG + chr5_2:27251011-27251030 None:intergenic 20.0%
!! TTACCTATCAAATAATCTAA+TGG - chr5_2:27251877-27251896 Msa0765910:intron 20.0%
!! TACCTATCAAATAATCTAAT+GGG - chr5_2:27251878-27251897 Msa0765910:intron 20.0%
!! AACAATTCCAAATCATATTA+TGG + chr5_2:27252173-27252192 None:intergenic 20.0%
!!! AATATGATTTGGAATTGTTT+AGG - chr5_2:27252174-27252193 Msa0765910:intron 20.0%
!! AATGTAGTTTATGAAAAAAC+AGG + chr5_2:27252332-27252351 None:intergenic 20.0%
!! GCTAAAAATTACAAAAATGT+GGG - chr5_2:27252524-27252543 Msa0765910:intron 20.0%
!!! ATTGGACATTTTTAAAATGT+GGG + chr5_2:27252718-27252737 None:intergenic 20.0%
!!! TATTGGACATTTTTAAAATG+TGG + chr5_2:27252719-27252738 None:intergenic 20.0%
!! AAATCTCACAATTTAGTAAT+TGG - chr5_2:27252941-27252960 Msa0765910:intron 20.0%
!! AATCTCACAATTTAGTAATT+GGG - chr5_2:27252942-27252961 Msa0765910:intron 20.0%
!! ATAGTGCATTTAAATCATAT+AGG - chr5_2:27253035-27253054 Msa0765910:intron 20.0%
!!! TTGTTATATTATCTTTTCTG+TGG - chr5_2:27253334-27253353 Msa0765910:intron 20.0%
!!! TGTTATATTATCTTTTCTGT+GGG - chr5_2:27253335-27253354 Msa0765910:intron 20.0%
!! TCAAAATAGAATGGATAAAA+TGG + chr5_2:27253500-27253519 None:intergenic 20.0%
!! TACAAAATATTGTGAAATAG+TGG - chr5_2:27253995-27254014 Msa0765910:intron 20.0%
!!! TTATACAATTTTGTCCATTT+CGG + chr5_2:27254082-27254101 None:intergenic 20.0%
!!! TCATTTTATTGTTGCAAATA+TGG - chr5_2:27254754-27254773 Msa0765910:CDS 20.0%
!!! ACATATAGTTTTAGAAATGT+GGG + chr5_2:27255097-27255116 None:intergenic 20.0%
!!! AACATATAGTTTTAGAAATG+TGG + chr5_2:27255098-27255117 None:intergenic 20.0%
!!! TGTATTACTTGATTTGAAAA+CGG + chr5_2:27255259-27255278 None:intergenic 20.0%
!!! TTTCTAATTAATTTTTGTGC+AGG - chr5_2:27255908-27255927 Msa0765910:CDS 20.0%
!!! TTCTAATTAATTTTTGTGCA+GGG - chr5_2:27255909-27255928 Msa0765910:CDS 20.0%
!!! TTTGTTAATGTTTCTGTTAA+CGG + chr5_2:27255958-27255977 None:intergenic 20.0%
!! CATACTTTTGAATTTTTTGC+TGG + chr5_2:27249554-27249573 None:intergenic 25.0%
! TGAATAATGAACTTGCAAAA+TGG - chr5_2:27249780-27249799 Msa0765910:CDS 25.0%
! AGTATGCATAAAAGTGAAAA+AGG + chr5_2:27249935-27249954 None:intergenic 25.0%
!!! TCACTTTTATGCATACTATT+AGG - chr5_2:27249938-27249957 Msa0765910:intron 25.0%
! CACATGTAAATTATACTTGT+AGG - chr5_2:27250042-27250061 Msa0765910:intron 25.0%
! AAAAAGAGATTTAATTGTGC+GGG + chr5_2:27250642-27250661 None:intergenic 25.0%
! GTATTTGATTGAAACTTTAC+AGG - chr5_2:27250703-27250722 Msa0765910:intron 25.0%
! ACAAATATGTGTTGTGTATT+GGG + chr5_2:27250729-27250748 None:intergenic 25.0%
! CTTTAAACTTCATAGAGAAA+AGG - chr5_2:27250793-27250812 Msa0765910:intron 25.0%
!!! GATCACAAGGTATAATTTTT+TGG - chr5_2:27250824-27250843 Msa0765910:intron 25.0%
! GTAAAAATTAATCTAGCACA+AGG - chr5_2:27250874-27250893 Msa0765910:intron 25.0%
!!! TATGATGTATTTTAACAGAC+TGG + chr5_2:27250943-27250962 None:intergenic 25.0%
! TGTCCATAAAAGTTGAAATT+TGG - chr5_2:27251096-27251115 Msa0765910:intron 25.0%
! GTCCATAAAAGTTGAAATTT+GGG - chr5_2:27251097-27251116 Msa0765910:intron 25.0%
! CATTATCTTAGTTCATAATC+TGG + chr5_2:27251256-27251275 None:intergenic 25.0%
!! GAGTTATATTTGATGATTTC+GGG + chr5_2:27251706-27251725 None:intergenic 25.0%
!! CGAGTTATATTTGATGATTT+CGG + chr5_2:27251707-27251726 None:intergenic 25.0%
! AAATCATCAAATATAACTCG+CGG - chr5_2:27251707-27251726 Msa0765910:intron 25.0%
! TCTCATATTCTTTACAGTAT+GGG + chr5_2:27251757-27251776 None:intergenic 25.0%
! TTCTCATATTCTTTACAGTA+TGG + chr5_2:27251758-27251777 None:intergenic 25.0%
! TTCCAAATCATATTATGGAA+GGG + chr5_2:27252168-27252187 None:intergenic 25.0%
! ATTCCAAATCATATTATGGA+AGG + chr5_2:27252169-27252188 None:intergenic 25.0%
! TGAAAGCTGTTAATTGATAA+TGG - chr5_2:27252198-27252217 Msa0765910:intron 25.0%
!! GAAAGCTGTTAATTGATAAT+GGG - chr5_2:27252199-27252218 Msa0765910:intron 25.0%
! AAAAATAAGTCAATCCAAAC+GGG + chr5_2:27252225-27252244 None:intergenic 25.0%
! CAAAAATAAGTCAATCCAAA+CGG + chr5_2:27252226-27252245 None:intergenic 25.0%
! GGCTAAAAATTACAAAAATG+TGG - chr5_2:27252523-27252542 Msa0765910:intron 25.0%
! AATTACAAAAATGTGGGTTT+AGG - chr5_2:27252530-27252549 Msa0765910:intron 25.0%
!!! TTGGACATTTTTAAAATGTG+GGG + chr5_2:27252717-27252736 None:intergenic 25.0%
! TGCATAGTTTGAGAAAATAT+TGG + chr5_2:27252736-27252755 None:intergenic 25.0%
!! ATTTTCTCAAACTATGCATT+TGG - chr5_2:27252738-27252757 Msa0765910:intron 25.0%
!! TTTTCTCAAACTATGCATTT+GGG - chr5_2:27252739-27252758 Msa0765910:intron 25.0%
!! TCTAAATAAATCCCCTATTT+TGG + chr5_2:27252971-27252990 None:intergenic 25.0%
! ATTGTGGGTCATTAAAATTA+GGG - chr5_2:27253006-27253025 Msa0765910:intron 25.0%
!!! TCTCGTCATGTTTTTTTATA+TGG - chr5_2:27253142-27253161 Msa0765910:intron 25.0%
! AACAATATCTTAAGTGGTTT+GGG + chr5_2:27253319-27253338 None:intergenic 25.0%
! TAACAATATCTTAAGTGGTT+TGG + chr5_2:27253320-27253339 None:intergenic 25.0%
! ATAAAATGGAGGAATGTTAT+AGG + chr5_2:27253486-27253505 None:intergenic 25.0%
! AAATAGAATGGATAAAATGG+AGG + chr5_2:27253497-27253516 None:intergenic 25.0%
!!! GTTATTGTTTTAACTACATC+AGG + chr5_2:27253572-27253591 None:intergenic 25.0%
! AAACAATAACATGAGAAATG+TGG - chr5_2:27253582-27253601 Msa0765910:intron 25.0%
!! TAAACTAAATTTTCTGCGAA+CGG - chr5_2:27253779-27253798 Msa0765910:intron 25.0%
! TATAAAATCAGCTGTTATAG+TGG - chr5_2:27253906-27253925 Msa0765910:intron 25.0%
!!! TGTACTACATAAGAGTATTA+CGG + chr5_2:27253979-27253998 None:intergenic 25.0%
! TTCTACTGCTAAAAATATTG+AGG - chr5_2:27255554-27255573 Msa0765910:intron 25.0%
! GGAAAATGTTGATATAATTC+TGG - chr5_2:27255575-27255594 Msa0765910:intron 25.0%
!! GTTTTCTTCAAATGTCTTAA+GGG + chr5_2:27255624-27255643 None:intergenic 25.0%
!! AGTTTTCTTCAAATGTCTTA+AGG + chr5_2:27255625-27255644 None:intergenic 25.0%
!! TTTTACAATTGTCTAAATGC+AGG - chr5_2:27255676-27255695 Msa0765910:intron 25.0%
! AGAGATGCAATATTTCATAA+AGG + chr5_2:27255869-27255888 None:intergenic 25.0%
GGAAGAACAACATTCATTTA+CGG + chr5_2:27249687-27249706 None:intergenic 30.0%
ACTAGAAAGACTTACAATAG+AGG + chr5_2:27249708-27249727 None:intergenic 30.0%
AGTACATAAACTTATTTCCG+AGG - chr5_2:27249754-27249773 Msa0765910:exon 30.0%
AAGTTCATTATTCAAGACCT+CGG + chr5_2:27249774-27249793 None:intergenic 30.0%
!! AAAGCTGTTTCTACATTGAA+TGG - chr5_2:27249810-27249829 Msa0765910:intron 30.0%
!! TGGTTGCTTTGTTTATTTCA+AGG - chr5_2:27249830-27249849 Msa0765910:intron 30.0%
!! GGTTGCTTTGTTTATTTCAA+GGG - chr5_2:27249831-27249850 Msa0765910:intron 30.0%
! TTTTCTCATTTCTTCATTGC+AGG - chr5_2:27249876-27249895 Msa0765910:intron 30.0%
TTTCTCATTTCTTCATTGCA+GGG - chr5_2:27249877-27249896 Msa0765910:intron 30.0%
! ATAATTTACATGTGCTACTG+TGG + chr5_2:27250036-27250055 None:intergenic 30.0%
ATGAAAGCTGAAATGTTTGA+TGG + chr5_2:27250274-27250293 None:intergenic 30.0%
ATGCTACTAATTCTCAAATC+AGG + chr5_2:27250321-27250340 None:intergenic 30.0%
! TGTATTTTATCACCAATCCA+TGG - chr5_2:27250401-27250420 Msa0765910:intron 30.0%
! GTATTTTATCACCAATCCAT+GGG - chr5_2:27250402-27250421 Msa0765910:intron 30.0%
!! AAGAAAATAAGTTGATCCCA+TGG + chr5_2:27250421-27250440 None:intergenic 30.0%
TGAAAAAATGTGCATTTCCA+TGG + chr5_2:27250675-27250694 None:intergenic 30.0%
CACAAATATGTGTTGTGTAT+TGG + chr5_2:27250730-27250749 None:intergenic 30.0%
CAATACACAACACATATTTG+TGG - chr5_2:27250728-27250747 Msa0765910:intron 30.0%
CAACACATATTTGTGGATAT+AGG - chr5_2:27250735-27250754 Msa0765910:intron 30.0%
ATATTTGTGGATATAGGCAT+GGG - chr5_2:27250741-27250760 Msa0765910:intron 30.0%
! CACCCAAATTTCAACTTTTA+TGG + chr5_2:27251102-27251121 None:intergenic 30.0%
CATAAAAGTTGAAATTTGGG+TGG - chr5_2:27251100-27251119 Msa0765910:intron 30.0%
!!! TCCAACTTTAAGGCTATTTT+GGG + chr5_2:27251643-27251662 None:intergenic 30.0%
CTATAATAGGTCCAACTTTA+AGG + chr5_2:27251653-27251672 None:intergenic 30.0%
CTTAAAGTTGGACCTATTAT+AGG - chr5_2:27251651-27251670 Msa0765910:intron 30.0%
ATTTAGTCATAGAAGAAGTG+AGG - chr5_2:27251779-27251798 Msa0765910:intron 30.0%
AGCCCATTAGATTATTTGAT+AGG + chr5_2:27251883-27251902 None:intergenic 30.0%
!!! AATCTAATGGGCTTGTTTTT+TGG - chr5_2:27251890-27251909 Msa0765910:intron 30.0%
! TTTTTCTGGATTAACCAATC+CGG + chr5_2:27252008-27252027 None:intergenic 30.0%
TTCCCTTCCATAATATGATT+TGG - chr5_2:27252163-27252182 Msa0765910:intron 30.0%
! CAAAATAAGCCTTATCCAAA+CGG - chr5_2:27252413-27252432 Msa0765910:intron 30.0%
! AAAATAAGCCTTATCCAAAC+GGG - chr5_2:27252414-27252433 Msa0765910:intron 30.0%
! AAATGTGGGTTTAGGAATTT+TGG - chr5_2:27252538-27252557 Msa0765910:intron 30.0%
! AATGTGGGTTTAGGAATTTT+GGG - chr5_2:27252539-27252558 Msa0765910:intron 30.0%
!! TTTGGGCAATGATTTTGAAA+TGG - chr5_2:27252556-27252575 Msa0765910:intron 30.0%
TTAGTGCTTAAATGTAGCTT+TGG - chr5_2:27252663-27252682 Msa0765910:intron 30.0%
AAACCGTGGATTTGAAAATA+GGG + chr5_2:27252690-27252709 None:intergenic 30.0%
AAAACCGTGGATTTGAAAAT+AGG + chr5_2:27252691-27252710 None:intergenic 30.0%
! TATTTTCAAATCCACGGTTT+TGG - chr5_2:27252690-27252709 Msa0765910:intron 30.0%
TTTCTCAAACTATGCATTTG+GGG - chr5_2:27252740-27252759 Msa0765910:intron 30.0%
AAATATGAAGACCAACATTG+TGG - chr5_2:27252990-27253009 Msa0765910:intron 30.0%
AATATGAAGACCAACATTGT+GGG - chr5_2:27252991-27253010 Msa0765910:intron 30.0%
!! ATTTTAATGACCCACAATGT+TGG + chr5_2:27253004-27253023 None:intergenic 30.0%
CATTGTGGGTCATTAAAATT+AGG - chr5_2:27253005-27253024 Msa0765910:intron 30.0%
TTGTGGGTCATTAAAATTAG+GGG - chr5_2:27253007-27253026 Msa0765910:intron 30.0%
TGATACCTATTTCAACTATG+TGG - chr5_2:27253087-27253106 Msa0765910:intron 30.0%
GATACCTATTTCAACTATGT+GGG - chr5_2:27253088-27253107 Msa0765910:intron 30.0%
ATACCTATTTCAACTATGTG+GGG - chr5_2:27253089-27253108 Msa0765910:intron 30.0%
!! TGTTAAAGTACTGGTAAGTA+AGG + chr5_2:27253278-27253297 None:intergenic 30.0%
!! GAAAAGACTTGTTAAAGTAC+TGG + chr5_2:27253287-27253306 None:intergenic 30.0%
GTATAATACATATACACCTC+AGG + chr5_2:27253464-27253483 None:intergenic 30.0%
CATACAAAGTGACAGAAATA+TGG + chr5_2:27253544-27253563 None:intergenic 30.0%
!! CATATTTCTGTCACTTTGTA+TGG - chr5_2:27253542-27253561 Msa0765910:intron 30.0%
TCTAACGTAGAAGTGAAAAT+TGG + chr5_2:27253621-27253640 None:intergenic 30.0%
ATAACCAAGTGCTTATTACA+CGG + chr5_2:27254168-27254187 None:intergenic 30.0%
GTAATAAGCACTTGGTTATT+AGG - chr5_2:27254169-27254188 Msa0765910:intron 30.0%
TGGTTATTAGGAATGATTTG+TGG - chr5_2:27254181-27254200 Msa0765910:intron 30.0%
! TGTTTACAGTTTGTTTCCAA+TGG - chr5_2:27254217-27254236 Msa0765910:intron 30.0%
! GTTTACAGTTTGTTTCCAAT+GGG - chr5_2:27254218-27254237 Msa0765910:intron 30.0%
AAGTAAATGAGGTAAGAACA+GGG + chr5_2:27254285-27254304 None:intergenic 30.0%
TAAGTAAATGAGGTAAGAAC+AGG + chr5_2:27254286-27254305 None:intergenic 30.0%
ACTCTAATCGAAAAGAAAGT+GGG + chr5_2:27254365-27254384 None:intergenic 30.0%
!! ACTTCTTTTGTTTCGATACA+GGG - chr5_2:27254465-27254484 Msa0765910:intron 30.0%
TCTTGGGACAAATTTATCTT+TGG - chr5_2:27254680-27254699 Msa0765910:intron 30.0%
AATCAAAGCCCAAATTAAAC+TGG - chr5_2:27254863-27254882 Msa0765910:intron 30.0%
!! CGAAAGTACCAGTTTAATTT+GGG + chr5_2:27254874-27254893 None:intergenic 30.0%
! CAAACTATGTTGTCTGAAAT+TGG + chr5_2:27255130-27255149 None:intergenic 30.0%
! TCTGAAATTGTACTTCTAGA+CGG - chr5_2:27255150-27255169 Msa0765910:intron 30.0%
!! GAAAATCAAATTGCTGTTTC+TGG + chr5_2:27255303-27255322 None:intergenic 30.0%
!!! TTAATTTTTTTCTTGCACGC+TGG - chr5_2:27255326-27255345 Msa0765910:CDS 30.0%
!! GATTGAACAACTTCTGAAAT+TGG + chr5_2:27255366-27255385 None:intergenic 30.0%
! TCTCATTTGCATCTAAAACT+CGG - chr5_2:27255384-27255403 Msa0765910:intron 30.0%
TCTCATTAAAGAAAAGACAG+TGG + chr5_2:27255437-27255456 None:intergenic 30.0%
AAAAGCTCATAAAGTGATGT+GGG + chr5_2:27255475-27255494 None:intergenic 30.0%
TAAGGGAAAAACTCAATTCT+GGG + chr5_2:27255607-27255626 None:intergenic 30.0%
TTAAGGGAAAAACTCAATTC+TGG + chr5_2:27255608-27255627 None:intergenic 30.0%
AAATATCAAAATCTCCGTTC+TGG + chr5_2:27255752-27255771 None:intergenic 30.0%
TGCAATCATGTGAAAAAACT+TGG - chr5_2:27255831-27255850 Msa0765910:intron 30.0%
! TTAATGTTTCTGTTAACGGT+TGG + chr5_2:27255954-27255973 None:intergenic 30.0%
ACCTGATCTTCTTCATGTTA+CGG - chr5_2:27249599-27249618 Msa0765910:three_prime_UTR 35.0%
!! TGTGCTACTGTGGATTTTAA+GGG + chr5_2:27250026-27250045 None:intergenic 35.0%
!! ATGTGCTACTGTGGATTTTA+AGG + chr5_2:27250027-27250046 None:intergenic 35.0%
TTATACTTGTAGGCTGAGTT+TGG - chr5_2:27250052-27250071 Msa0765910:intron 35.0%
!! AATAAGTTGATCCCATGGAT+TGG + chr5_2:27250416-27250435 None:intergenic 35.0%
CGGGTTAAATTTCCAAACAT+TGG + chr5_2:27250561-27250580 None:intergenic 35.0%
AAATTTAACCCGAGAACCTT+TGG - chr5_2:27250569-27250588 Msa0765910:intron 35.0%
! GTAATTAGGTAGTTTGCCAA+AGG + chr5_2:27250588-27250607 None:intergenic 35.0%
!!! TCTTTTTTGTCTTCAGTCCA+TGG - chr5_2:27250655-27250674 Msa0765910:CDS 35.0%
CATATTTGTGGATATAGGCA+TGG - chr5_2:27250740-27250759 Msa0765910:intron 35.0%
AAAGGGAAGAAAAGATCACA+AGG - chr5_2:27250811-27250830 Msa0765910:intron 35.0%
TTCTGTTATGGAAGTTAGAC+TGG + chr5_2:27250999-27251018 None:intergenic 35.0%
TGTAGTTAATGTTCCTGCTT+AGG + chr5_2:27251161-27251180 None:intergenic 35.0%
ACTGATTGTCACAAAACACT+GGG - chr5_2:27251278-27251297 Msa0765910:intron 35.0%
CATGTACTACAGACATTCAT+TGG + chr5_2:27251333-27251352 None:intergenic 35.0%
GTGCCACAACTTATTGTTTA+CGG - chr5_2:27251388-27251407 Msa0765910:intron 35.0%
TGCCACAACTTATTGTTTAC+GGG - chr5_2:27251389-27251408 Msa0765910:intron 35.0%
!!! GTCCAACTTTAAGGCTATTT+TGG + chr5_2:27251644-27251663 None:intergenic 35.0%
GACCTATTATAGGCTACTTA+CGG - chr5_2:27251661-27251680 Msa0765910:intron 35.0%
AACCGTAAGTAGCCTATAAT+AGG + chr5_2:27251666-27251685 None:intergenic 35.0%
! AAACCCTTATTTATCACGAC+CGG - chr5_2:27251986-27252005 Msa0765910:intron 35.0%
AATCCGGTCGTGATAAATAA+GGG + chr5_2:27251992-27252011 None:intergenic 35.0%
! GCAGAGGTTAGTTAAATCAT+AGG - chr5_2:27252448-27252467 Msa0765910:intron 35.0%
AACCGTGGATTTGAAAATAG+GGG + chr5_2:27252689-27252708 None:intergenic 35.0%
!!! TTGGGGTTGGTTTTCTATAA+TGG - chr5_2:27252757-27252776 Msa0765910:intron 35.0%
!!! TGGGGTTGGTTTTCTATAAT+GGG - chr5_2:27252758-27252777 Msa0765910:intron 35.0%
! TTGATGACATGACACTATCT+AGG + chr5_2:27252850-27252869 None:intergenic 35.0%
! TTTCGCAAACTTCGCATTTT+GGG + chr5_2:27252921-27252940 None:intergenic 35.0%
! TTTTCGCAAACTTCGCATTT+TGG + chr5_2:27252922-27252941 None:intergenic 35.0%
AGTAATTGGGAGACCAAAAT+AGG - chr5_2:27252955-27252974 Msa0765910:intron 35.0%
GTAATTGGGAGACCAAAATA+GGG - chr5_2:27252956-27252975 Msa0765910:intron 35.0%
TAATTGGGAGACCAAAATAG+GGG - chr5_2:27252957-27252976 Msa0765910:intron 35.0%
TGTGGGTCATTAAAATTAGG+GGG - chr5_2:27253008-27253027 Msa0765910:intron 35.0%
AAGAGAAAGTTGGAGGTAAA+TGG + chr5_2:27253178-27253197 None:intergenic 35.0%
AACATGTAAGAGAAAGTTGG+AGG + chr5_2:27253185-27253204 None:intergenic 35.0%
CCAAACATGTAAGAGAAAGT+TGG + chr5_2:27253188-27253207 None:intergenic 35.0%
CCAACTTTCTCTTACATGTT+TGG - chr5_2:27253185-27253204 Msa0765910:intron 35.0%
GGGAATGCAAGATAAACTAT+AGG + chr5_2:27253216-27253235 None:intergenic 35.0%
TGACAATGTTACGATAGACA+AGG + chr5_2:27253386-27253405 None:intergenic 35.0%
ACAAAGTGACAGAAATATGG+AGG + chr5_2:27253541-27253560 None:intergenic 35.0%
!! ATTTCTGTCACTTTGTATGG+TGG - chr5_2:27253545-27253564 Msa0765910:intron 35.0%
TTGTGAAATAGTGGCTATAG+CGG - chr5_2:27254004-27254023 Msa0765910:intron 35.0%
! GTATTTTCTGTGATCCGAAA+TGG - chr5_2:27254065-27254084 Msa0765910:intron 35.0%
!! TATGTGGCTCTAAGTAAATG+AGG + chr5_2:27254296-27254315 None:intergenic 35.0%
TCATTTACTTAGAGCCACAT+AGG - chr5_2:27254295-27254314 Msa0765910:intron 35.0%
CATTTACTTAGAGCCACATA+GGG - chr5_2:27254296-27254315 Msa0765910:intron 35.0%
CACTCTAATCGAAAAGAAAG+TGG + chr5_2:27254366-27254385 None:intergenic 35.0%
! CACTTTCTTTTCGATTAGAG+TGG - chr5_2:27254364-27254383 Msa0765910:intron 35.0%
!!! ACTTTGCTGCTCTTTTTTCT+AGG - chr5_2:27254420-27254439 Msa0765910:intron 35.0%
!! CACTTCTTTTGTTTCGATAC+AGG - chr5_2:27254464-27254483 Msa0765910:intron 35.0%
AGAGAACAAAAGCAAGAAGT+AGG + chr5_2:27254498-27254517 None:intergenic 35.0%
AAACTAGAGTAGAGAAAGAG+GGG + chr5_2:27254531-27254550 None:intergenic 35.0%
CAAACTAGAGTAGAGAAAGA+GGG + chr5_2:27254532-27254551 None:intergenic 35.0%
! CTCTTTCTCTACTCTAGTTT+GGG - chr5_2:27254531-27254550 Msa0765910:intron 35.0%
! TCTACTCTAGTTTGGGATTA+TGG - chr5_2:27254538-27254557 Msa0765910:intron 35.0%
TCTTATGCCTATGCTATCTT+GGG - chr5_2:27254664-27254683 Msa0765910:intron 35.0%
AATTTGTCCCAAGATAGCAT+AGG + chr5_2:27254674-27254693 None:intergenic 35.0%
!! GCGAAAGTACCAGTTTAATT+TGG + chr5_2:27254875-27254894 None:intergenic 35.0%
GTTACAAGCAGTAGATATCA+GGG + chr5_2:27254922-27254941 None:intergenic 35.0%
AGTTACAAGCAGTAGATATC+AGG + chr5_2:27254923-27254942 None:intergenic 35.0%
!! AGTTGATAGAGCCATCAATA+TGG - chr5_2:27254990-27255009 Msa0765910:intron 35.0%
! GTTGATAGAGCCATCAATAT+GGG - chr5_2:27254991-27255010 Msa0765910:intron 35.0%
TCATAAAGTGATGTGGGTTT+GGG + chr5_2:27255469-27255488 None:intergenic 35.0%
GAAAAGCTCATAAAGTGATG+TGG + chr5_2:27255476-27255495 None:intergenic 35.0%
! GCTTTTCATCTTTACCAATG+TGG - chr5_2:27255489-27255508 Msa0765910:intron 35.0%
TCTAAATGCAGGTTTGTGAA+GGG - chr5_2:27255687-27255706 Msa0765910:intron 35.0%
ATTTCTTCATTGCAGGGACA+AGG - chr5_2:27249883-27249902 Msa0765910:intron 40.0%
! TGGTAACGCTATTCTTCTCT+AGG + chr5_2:27250194-27250213 None:intergenic 40.0%
ATTGACCATAGTTCTCAGAC+TGG + chr5_2:27250214-27250233 None:intergenic 40.0%
CTGAGAACTATGGTCAATCT+TGG - chr5_2:27250216-27250235 Msa0765910:intron 40.0%
! AGCTAAAAAGCACGTGAAGT+AGG + chr5_2:27250297-27250316 None:intergenic 40.0%
ACCTAATTACTCATCAGCAC+AGG - chr5_2:27250598-27250617 Msa0765910:intron 40.0%
! GAAGTTTAAAGCTTCAGACC+AGG + chr5_2:27250784-27250803 None:intergenic 40.0%
ATACACCTCTGACAAACTCA+AGG - chr5_2:27251034-27251053 Msa0765910:intron 40.0%
TTCAGTTCCATATGCTTAGC+CGG - chr5_2:27251220-27251239 Msa0765910:intron 40.0%
!!! ATAATCTGGTTTTGCATGCC+CGG + chr5_2:27251242-27251261 None:intergenic 40.0%
! CACTGATTGTCACAAAACAC+TGG - chr5_2:27251277-27251296 Msa0765910:intron 40.0%
AAAACACTGGGACTAGAGAA+GGG - chr5_2:27251290-27251309 Msa0765910:intron 40.0%
GTCCCGTAAACAATAAGTTG+TGG + chr5_2:27251394-27251413 None:intergenic 40.0%
TTACATTGGGGCCAATCTAA+GGG + chr5_2:27251416-27251435 None:intergenic 40.0%
ATTACATTGGGGCCAATCTA+AGG + chr5_2:27251417-27251436 None:intergenic 40.0%
! TTAGATTGGCCCCAATGTAA+TGG - chr5_2:27251416-27251435 Msa0765910:intron 40.0%
TCATGAGCTGCCATTACATT+GGG + chr5_2:27251429-27251448 None:intergenic 40.0%
ATCATGAGCTGCCATTACAT+TGG + chr5_2:27251430-27251449 None:intergenic 40.0%
TGTAATGGCAGCTCATGATA+TGG - chr5_2:27251431-27251450 Msa0765910:intron 40.0%
!! AGCGTCTTTTAAGGAGATAG+CGG - chr5_2:27251559-27251578 Msa0765910:intron 40.0%
!!! CTTTTAAGGAGATAGCGGAT+AGG - chr5_2:27251564-27251583 Msa0765910:intron 40.0%
! GCCCAAAATAGCCTTAAAGT+TGG - chr5_2:27251639-27251658 Msa0765910:intron 40.0%
!! GATGATTTCGGGTTTCCTTT+GGG + chr5_2:27251695-27251714 None:intergenic 40.0%
!! TGATGATTTCGGGTTTCCTT+TGG + chr5_2:27251696-27251715 None:intergenic 40.0%
TCTTTACAGTATGGGACCTA+GGG + chr5_2:27251749-27251768 None:intergenic 40.0%
TTCTTTACAGTATGGGACCT+AGG + chr5_2:27251750-27251769 None:intergenic 40.0%
TGAGTAAAAGAACAGTTGGG+GGG + chr5_2:27251933-27251952 None:intergenic 40.0%
GTGAGTAAAAGAACAGTTGG+GGG + chr5_2:27251934-27251953 None:intergenic 40.0%
GGTGAGTAAAAGAACAGTTG+GGG + chr5_2:27251935-27251954 None:intergenic 40.0%
GGGTGAGTAAAAGAACAGTT+GGG + chr5_2:27251936-27251955 None:intergenic 40.0%
TGGGTGAGTAAAAGAACAGT+TGG + chr5_2:27251937-27251956 None:intergenic 40.0%
! TGTTCTTTTACTCACCCATC+CGG - chr5_2:27251939-27251958 Msa0765910:intron 40.0%
!!! GTTTTTTTTCCCGTCCAGAT+TGG + chr5_2:27251970-27251989 None:intergenic 40.0%
CAATCCGGTCGTGATAAATA+AGG + chr5_2:27251993-27252012 None:intergenic 40.0%
CTTATTTATCACGACCGGAT+TGG - chr5_2:27251991-27252010 Msa0765910:intron 40.0%
!!! CGGGGAAAAACGATTTTTTC+TGG + chr5_2:27252022-27252041 None:intergenic 40.0%
ATAGATTTACCCATCTGGAC+GGG + chr5_2:27252041-27252060 None:intergenic 40.0%
CATAGATTTACCCATCTGGA+CGG + chr5_2:27252042-27252061 None:intergenic 40.0%
GCTTCATAGATTTACCCATC+TGG + chr5_2:27252046-27252065 None:intergenic 40.0%
ATGGGTAAATCTATGAAGCC+TGG - chr5_2:27252047-27252066 Msa0765910:intron 40.0%
AAGCCTGGATACTTCAAAAG+TGG - chr5_2:27252062-27252081 Msa0765910:intron 40.0%
!!! TCTCCACTTTTGAAGTATCC+AGG + chr5_2:27252068-27252087 None:intergenic 40.0%
GGAAGGGAAGACAGATAAAT+AGG + chr5_2:27252152-27252171 None:intergenic 40.0%
!! TAATTGATAATGGGCCCGTT+TGG - chr5_2:27252208-27252227 Msa0765910:intron 40.0%
AGTAGATAGTTTCGAGAGCT+TGG - chr5_2:27252502-27252521 Msa0765910:intron 40.0%
! TCAAACTATGCATTTGGGGT+TGG - chr5_2:27252744-27252763 Msa0765910:intron 40.0%
ATGACATGACACTATCTAGG+TGG + chr5_2:27252847-27252866 None:intergenic 40.0%
! TTCGCAAACTTCGCATTTTG+GGG + chr5_2:27252920-27252939 None:intergenic 40.0%
CAACCCCACATAGTTGAAAT+AGG + chr5_2:27253095-27253114 None:intergenic 40.0%
! GAATGCTCCAATTTTCATCG+CGG + chr5_2:27253442-27253461 None:intergenic 40.0%
! TGAAAATTGGAGCATTCCTG+AGG - chr5_2:27253445-27253464 Msa0765910:intron 40.0%
! TTCCAATGGGACTTTTTGTG+AGG - chr5_2:27254231-27254250 Msa0765910:intron 40.0%
ATCCTCACAAAAAGTCCCAT+TGG + chr5_2:27254236-27254255 None:intergenic 40.0%
ATCGAAAAGAAAGTGGGTAC+AGG + chr5_2:27254359-27254378 None:intergenic 40.0%
!!! TTGCTGCTCTTTTTTCTAGG+AGG - chr5_2:27254423-27254442 Msa0765910:intron 40.0%
CCAAACTAGAGTAGAGAAAG+AGG + chr5_2:27254533-27254552 None:intergenic 40.0%
CCTCTTTCTCTACTCTAGTT+TGG - chr5_2:27254530-27254549 Msa0765910:intron 40.0%
GCTATCCAGGATTAACAACA+TGG - chr5_2:27254630-27254649 Msa0765910:intron 40.0%
CTCTTATGCCTATGCTATCT+TGG - chr5_2:27254663-27254682 Msa0765910:intron 40.0%
AAGAACCACTTGTGTATTGC+AGG - chr5_2:27254808-27254827 Msa0765910:intron 40.0%
! AACTGTACTCCTTTCGAGTA+AGG - chr5_2:27254939-27254958 Msa0765910:intron 40.0%
!! AGAAGTACCCTTGAAGCATT+AGG - chr5_2:27255056-27255075 Msa0765910:intron 40.0%
! GAAGTACCCTTGAAGCATTA+GGG - chr5_2:27255057-27255076 Msa0765910:intron 40.0%
! AAGTACCCTTGAAGCATTAG+GGG - chr5_2:27255058-27255077 Msa0765910:intron 40.0%
!! TCTAGACGGCATTAGTCTTA+TGG - chr5_2:27255164-27255183 Msa0765910:intron 40.0%
CTCATAAAGTGATGTGGGTT+TGG + chr5_2:27255470-27255489 None:intergenic 40.0%
TGGGTATGAAAATGCCACAT+TGG + chr5_2:27255506-27255525 None:intergenic 40.0%
TAGCAGTAGAATCATCACTG+TGG + chr5_2:27255545-27255564 None:intergenic 40.0%
GTCTAAATGCAGGTTTGTGA+AGG - chr5_2:27255686-27255705 Msa0765910:intron 40.0%
CAAAATCTCCGTTCTGGTAA+GGG + chr5_2:27255746-27255765 None:intergenic 40.0%
TCAAAATCTCCGTTCTGGTA+AGG + chr5_2:27255747-27255766 None:intergenic 40.0%
GCCGTAACATGAAGAAGATC+AGG + chr5_2:27249603-27249622 None:intergenic 45.0%
TTCTTCATGTTACGGCTCAG+AGG - chr5_2:27249607-27249626 Msa0765910:three_prime_UTR 45.0%
CGTTACCAGTCTGAGAACTA+TGG - chr5_2:27250206-27250225 Msa0765910:intron 45.0%
!! TATGGTCAATCTTGGCTCTG+AGG - chr5_2:27250224-27250243 Msa0765910:intron 45.0%
! GAGGTGTCTAGACACAAGTT+GGG + chr5_2:27250516-27250535 None:intergenic 45.0%
!! AGAGGTGTCTAGACACAAGT+TGG + chr5_2:27250517-27250536 None:intergenic 45.0%
! GTAGTTTGCCAAAGGTTCTC+GGG + chr5_2:27250580-27250599 None:intergenic 45.0%
! GGTAGTTTGCCAAAGGTTCT+CGG + chr5_2:27250581-27250600 None:intergenic 45.0%
! GCCTGTGCTGATGAGTAATT+AGG + chr5_2:27250602-27250621 None:intergenic 45.0%
TATAGGCATGGGATTCCATG+TGG - chr5_2:27250752-27250771 Msa0765910:intron 45.0%
GATTCCATGTGGAGTTTACC+TGG - chr5_2:27250763-27250782 Msa0765910:intron 45.0%
!! ATCTAGCACAAGGGAGTGTT+TGG - chr5_2:27250884-27250903 Msa0765910:intron 45.0%
!! TCTAGCACAAGGGAGTGTTT+GGG - chr5_2:27250885-27250904 Msa0765910:intron 45.0%
ACCTCTGACAAACTCAAGGT+GGG - chr5_2:27251038-27251057 Msa0765910:intron 45.0%
! TTTGGGTGGAGAAAAAGCGT+TGG - chr5_2:27251114-27251133 Msa0765910:intron 45.0%
TGTTCCTGCTTAGGAACAGT+GGG + chr5_2:27251152-27251171 None:intergenic 45.0%
ATGTTCCTGCTTAGGAACAG+TGG + chr5_2:27251153-27251172 None:intergenic 45.0%
TCAGTTCCATATGCTTAGCC+GGG - chr5_2:27251221-27251240 Msa0765910:intron 45.0%
CAAAACACTGGGACTAGAGA+AGG - chr5_2:27251289-27251308 Msa0765910:intron 45.0%
TGTTTACGGGACCCTTAGAT+TGG - chr5_2:27251402-27251421 Msa0765910:intron 45.0%
CATGAGCTGCCATTACATTG+GGG + chr5_2:27251428-27251447 None:intergenic 45.0%
CTGGTCTATGTTGTCGATAG+AGG - chr5_2:27251456-27251475 Msa0765910:intron 45.0%
CACGATAGCAGCGTAGTAAA+GGG - chr5_2:27251489-27251508 Msa0765910:intron 45.0%
GCTATCTCCTTAAAAGACGC+TGG + chr5_2:27251560-27251579 None:intergenic 45.0%
!! ATAGCGGATAGGTTCACCTT+TGG - chr5_2:27251575-27251594 Msa0765910:intron 45.0%
GCAGGCGTGAAAAAGAGAAT+TGG - chr5_2:27251609-27251628 Msa0765910:intron 45.0%
! CTTACGGTTTTTCGTCCCAA+AGG - chr5_2:27251677-27251696 Msa0765910:intron 45.0%
GTCACTGTCTTCACTTCTTC+TGG + chr5_2:27251820-27251839 None:intergenic 45.0%
CCAGATTGGTAAATCCGGAT+GGG + chr5_2:27251956-27251975 None:intergenic 45.0%
TCCAGATTGGTAAATCCGGA+TGG + chr5_2:27251957-27251976 None:intergenic 45.0%
TCCGGATTTACCAATCTGGA+CGG - chr5_2:27251957-27251976 Msa0765910:intron 45.0%
TAGATTTACCCATCTGGACG+GGG + chr5_2:27252040-27252059 None:intergenic 45.0%
ACATTGGTCCCGTTTGGATA+AGG + chr5_2:27252425-27252444 None:intergenic 45.0%
AACTAACCTCTGCTGCACAT+TGG + chr5_2:27252441-27252460 None:intergenic 45.0%
! GGCCCCTATTTTCAAATCCA+CGG - chr5_2:27252684-27252703 Msa0765910:intron 45.0%
AGACAAATGGGATGCTTCTG+TGG + chr5_2:27252881-27252900 None:intergenic 45.0%
!! TTCCCTCTAAGACCAACCAT+TGG - chr5_2:27253231-27253250 Msa0765910:intron 45.0%
!! GTCCAATGGTTGGTCTTAGA+GGG + chr5_2:27253236-27253255 None:intergenic 45.0%
!! AGTCCAATGGTTGGTCTTAG+AGG + chr5_2:27253237-27253256 None:intergenic 45.0%
AGTAAGGACAGTAGACTGGA+TGG + chr5_2:27253262-27253281 None:intergenic 45.0%
GGTAAGTAAGGACAGTAGAC+TGG + chr5_2:27253266-27253285 None:intergenic 45.0%
GGCAGGAGTAAACTTTGCAT+TGG + chr5_2:27253414-27253433 None:intergenic 45.0%
GCTATAGCGCTATTGCATAG+CGG - chr5_2:27253930-27253949 Msa0765910:intron 45.0%
CTCCATACAACCGTGCTATA+GGG + chr5_2:27254030-27254049 None:intergenic 45.0%
CAAGCCGTGTAATAAGCACT+TGG - chr5_2:27254161-27254180 Msa0765910:intron 45.0%
TGCAGAAATGCAGAGAACAG+AGG + chr5_2:27254322-27254341 None:intergenic 45.0%
AAGTGGGTACAGGTGCTTAT+TGG + chr5_2:27254349-27254368 None:intergenic 45.0%
GCTGATCTTTCCAGATACTG+TGG - chr5_2:27254386-27254405 Msa0765910:intron 45.0%
GATCTTTCCAGATACTGTGG+AGG - chr5_2:27254389-27254408 Msa0765910:intron 45.0%
ACTCCACTAATCTGCTTCAG+CGG - chr5_2:27254587-27254606 Msa0765910:intron 45.0%
AAACCGCTGAAGCAGATTAG+TGG + chr5_2:27254593-27254612 None:intergenic 45.0%
GACAGCCATGTTGTTAATCC+TGG + chr5_2:27254638-27254657 None:intergenic 45.0%
ATCTGCCTGCAATACACAAG+TGG + chr5_2:27254816-27254835 None:intergenic 45.0%
TGTGTATTGCAGGCAGATAG+AGG - chr5_2:27254818-27254837 Msa0765910:intron 45.0%
AGCAGCAATCCTTACTCGAA+AGG + chr5_2:27254951-27254970 None:intergenic 45.0%
TTTCCTGATCCATGTCAGCT+AGG + chr5_2:27255037-27255056 None:intergenic 45.0%
! AGTACCCTTGAAGCATTAGG+GGG - chr5_2:27255059-27255078 Msa0765910:intron 45.0%
GTAACCCCCTAATGCTTCAA+GGG + chr5_2:27255066-27255085 None:intergenic 45.0%
AGTAACCCCCTAATGCTTCA+AGG + chr5_2:27255067-27255086 None:intergenic 45.0%
AAGTGATGTGGGTTTGGGAA+TGG + chr5_2:27255464-27255483 None:intergenic 45.0%
AGAATCATCACTGTGGCTGA+GGG + chr5_2:27255538-27255557 None:intergenic 45.0%
TAGAATCATCACTGTGGCTG+AGG + chr5_2:27255539-27255558 None:intergenic 45.0%
CTGAGAAACCCTTACCAGAA+CGG - chr5_2:27255735-27255754 Msa0765910:intron 45.0%
TGTAGGCTGAGTTTGGAGAC+TGG - chr5_2:27250059-27250078 Msa0765910:intron 50.0%
! ACATTGGTTGCACCCTGGAT+CGG + chr5_2:27250545-27250564 None:intergenic 50.0%
TCCAGGGTGCAACCAATGTT+TGG - chr5_2:27250546-27250565 Msa0765910:intron 50.0%
! TCCAAACATTGGTTGCACCC+TGG + chr5_2:27250550-27250569 None:intergenic 50.0%
CAGACCAGGTAAACTCCACA+TGG + chr5_2:27250770-27250789 None:intergenic 50.0%
CACCTCTGACAAACTCAAGG+TGG - chr5_2:27251037-27251056 Msa0765910:intron 50.0%
ACCCACCTTGAGTTTGTCAG+AGG + chr5_2:27251042-27251061 None:intergenic 50.0%
GGCAGCTCATGATATGGATC+TGG - chr5_2:27251437-27251456 Msa0765910:intron 50.0%
CCTTTACTACGCTGCTATCG+TGG + chr5_2:27251491-27251510 None:intergenic 50.0%
CCACGATAGCAGCGTAGTAA+AGG - chr5_2:27251488-27251507 Msa0765910:intron 50.0%
! GTAGCGACCAGCGTCTTTTA+AGG - chr5_2:27251550-27251569 Msa0765910:intron 50.0%
! GGATAGGTTCACCTTTGGAG+CGG - chr5_2:27251580-27251599 Msa0765910:intron 50.0%
GACACTGTATTTGTGCGCTG+CGG - chr5_2:27251837-27251856 Msa0765910:intron 50.0%
CTGCGGCTGGGTTACATTTA+AGG - chr5_2:27251854-27251873 Msa0765910:intron 50.0%
CCCATCCGGATTTACCAATC+TGG - chr5_2:27251953-27251972 Msa0765910:intron 50.0%
CCCGTCCAGATTGGTAAATC+CGG + chr5_2:27251961-27251980 None:intergenic 50.0%
CCGGATTTACCAATCTGGAC+GGG - chr5_2:27251958-27251977 Msa0765910:intron 50.0%
!! ATCGTTTTTCCCCGTCCAGA+TGG - chr5_2:27252028-27252047 Msa0765910:intron 50.0%
!! TCGTTTTTCCCCGTCCAGAT+GGG - chr5_2:27252029-27252048 Msa0765910:intron 50.0%
AAATGTGGGGACCAAAACCG+TGG + chr5_2:27252704-27252723 None:intergenic 50.0%
TGGATGGACAGTCCAATGGT+TGG + chr5_2:27253246-27253265 None:intergenic 50.0%
AGACTGGATGGACAGTCCAA+TGG + chr5_2:27253250-27253269 None:intergenic 50.0%
! CCAATTTTCATCGCGGCTTC+TGG + chr5_2:27253435-27253454 None:intergenic 50.0%
CCAGAAGCCGCGATGAAAAT+TGG - chr5_2:27253432-27253451 Msa0765910:intron 50.0%
CCTCCATACAACCGTGCTAT+AGG + chr5_2:27254031-27254050 None:intergenic 50.0%
CCTATAGCACGGTTGTATGG+AGG - chr5_2:27254028-27254047 Msa0765910:intron 50.0%
ACAGACACCTCCACAGTATC+TGG + chr5_2:27254399-27254418 None:intergenic 50.0%
!! GCTTCAGCGGTTTTAGTGTC+AGG - chr5_2:27254600-27254619 Msa0765910:intron 50.0%
GTAGGCTTGGCCCATATTGA+TGG + chr5_2:27255004-27255023 None:intergenic 50.0%
ATGTCAGCTAGGATCCAGTG+GGG + chr5_2:27255026-27255045 None:intergenic 50.0%
CATGTCAGCTAGGATCCAGT+GGG + chr5_2:27255027-27255046 None:intergenic 50.0%
GATCCTAGCTGACATGGATC+AGG - chr5_2:27255031-27255050 Msa0765910:intron 50.0%
TGGCTGAGGGTAGACTAAGT+GGG + chr5_2:27255525-27255544 None:intergenic 50.0%
TCTGGTAAGGGTTTCTCAGC+TGG + chr5_2:27255734-27255753 None:intergenic 50.0%
TCAGCCCACTGTTCCTAAGC+AGG - chr5_2:27251145-27251164 Msa0765910:intron 55.0%
TGCATGCCCGGCTAAGCATA+TGG + chr5_2:27251230-27251249 None:intergenic 55.0%
CTGGGACTAGAGAAGGGAAC+TGG - chr5_2:27251296-27251315 Msa0765910:intron 55.0%
AGTTGTGGCACGTGCTAGCA+CGG + chr5_2:27251379-27251398 None:intergenic 55.0%
ACGCTGCTATCGTGGCGTTA+CGG + chr5_2:27251483-27251502 None:intergenic 55.0%
! AGGGTGTCTGTTCCCACATG+TGG - chr5_2:27251508-27251527 Msa0765910:intron 55.0%
GTGTCTGTTCCCACATGTGG+CGG - chr5_2:27251511-27251530 Msa0765910:intron 55.0%
TGCGACAATCCACTGTCCCT+AGG - chr5_2:27251730-27251749 Msa0765910:intron 55.0%
AGTATGGGACCTAGGGACAG+TGG + chr5_2:27251742-27251761 None:intergenic 55.0%
TGTATTTGTGCGCTGCGGCT+GGG - chr5_2:27251842-27251861 Msa0765910:intron 55.0%
TGCTGCACATTGGTCCCGTT+TGG + chr5_2:27252431-27252450 None:intergenic 55.0%
! TTTTCATCGCGGCTTCTGGC+AGG + chr5_2:27253431-27253450 None:intergenic 55.0%
TCTGCGAACGGCATGCACTT+TGG - chr5_2:27253791-27253810 Msa0765910:intron 55.0%
GCTATAGCGGCCCTATAGCA+CGG - chr5_2:27254017-27254036 Msa0765910:intron 55.0%
GGCCCTATAGCACGGTTGTA+TGG - chr5_2:27254025-27254044 Msa0765910:intron 55.0%
CAGAGAACAGAGGCCCTATG+TGG + chr5_2:27254312-27254331 None:intergenic 55.0%
CCATGTCAGCTAGGATCCAG+TGG + chr5_2:27255028-27255047 None:intergenic 55.0%
CCACTGGATCCTAGCTGACA+TGG - chr5_2:27255025-27255044 Msa0765910:intron 55.0%
GTGGCTGAGGGTAGACTAAG+TGG + chr5_2:27255526-27255545 None:intergenic 55.0%
TTGGTTGCACCCTGGATCGG+CGG + chr5_2:27250542-27250561 None:intergenic 60.0%
TGCGACACTCCGCCACATGT+GGG + chr5_2:27251523-27251542 None:intergenic 60.0%
!! TGTGGCGGAGTGTCGCAGAA+TGG - chr5_2:27251526-27251545 Msa0765910:intron 60.0%
CTGTATTTGTGCGCTGCGGC+TGG - chr5_2:27251841-27251860 Msa0765910:intron 60.0%
ACGGGACCAATGTGCAGCAG+AGG - chr5_2:27252432-27252451 Msa0765910:intron 60.0%
AGGATCCAGTGGGGTAGGCT+TGG + chr5_2:27255017-27255036 None:intergenic 60.0%
CAGCTAGGATCCAGTGGGGT+AGG + chr5_2:27255022-27255041 None:intergenic 60.0%
ACACCTCTCTCCGCCGATCC+AGG - chr5_2:27250529-27250548 Msa0765910:intron 65.0%
CACCTCTCTCCGCCGATCCA+GGG - chr5_2:27250530-27250549 Msa0765910:intron 65.0%
TGTGGCACGTGCTAGCACGG+AGG + chr5_2:27251376-27251395 None:intergenic 65.0%
CTGCGACACTCCGCCACATG+TGG + chr5_2:27251524-27251543 None:intergenic 65.0%
CCTGCGTAGCACCGCTCCAA+AGG + chr5_2:27251594-27251613 None:intergenic 65.0%
!! CCTTTGGAGCGGTGCTACGC+AGG - chr5_2:27251591-27251610 Msa0765910:intron 65.0%
GTCAGGCTGCGCTGCTATCC+AGG - chr5_2:27254617-27254636 Msa0765910:intron 65.0%
ATGGGCCAAGCCTACCCCAC+TGG - chr5_2:27255009-27255028 Msa0765910:intron 65.0%
CACCCTGGATCGGCGGAGAG+AGG + chr5_2:27250535-27250554 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 27249537 27255984 27249537 ID=Msa0765910;Name=Msa0765910
chr5_2 mRNA 27249537 27255984 27249537 ID=Msa0765910-mRNA-1;Parent=Msa0765910;Name=Msa0765910-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.75|0.8|1|1|1|5|218|141
chr5_2 exon 27249537 27249823 27249537 ID=Msa0765910-mRNA-1:exon:10685;Parent=Msa0765910-mRNA-1
chr5_2 exon 27250637 27250691 27250637 ID=Msa0765910-mRNA-1:exon:10684;Parent=Msa0765910-mRNA-1
chr5_2 exon 27254689 27254796 27254689 ID=Msa0765910-mRNA-1:exon:10683;Parent=Msa0765910-mRNA-1
chr5_2 exon 27255256 27255357 27255256 ID=Msa0765910-mRNA-1:exon:10682;Parent=Msa0765910-mRNA-1
chr5_2 exon 27255893 27255984 27255893 ID=Msa0765910-mRNA-1:exon:10681;Parent=Msa0765910-mRNA-1
chr5_2 CDS 27255893 27255984 27255893 ID=Msa0765910-mRNA-1:cds;Parent=Msa0765910-mRNA-1
chr5_2 CDS 27255256 27255357 27255256 ID=Msa0765910-mRNA-1:cds;Parent=Msa0765910-mRNA-1
chr5_2 CDS 27254689 27254796 27254689 ID=Msa0765910-mRNA-1:cds;Parent=Msa0765910-mRNA-1
chr5_2 CDS 27250637 27250691 27250637 ID=Msa0765910-mRNA-1:cds;Parent=Msa0765910-mRNA-1
chr5_2 CDS 27249755 27249823 27249755 ID=Msa0765910-mRNA-1:cds;Parent=Msa0765910-mRNA-1
chr5_2 three_prime_UTR 27249537 27249754 27249537 ID=Msa0765910-mRNA-1:three_prime_utr;Parent=Msa0765910-mRNA-1
Gene Sequence

>Msa0765910

ATGGACAATTTACGCCAGCAAAAAATTCAAAAGTATGAAGAATTTGTTGATAAACGCTTGAAACCTGATCTTCTTCATGTTACGGCTCAGAGTGCTGATTTGCGAAGAAATATTGAAAACCTAGAGAAGAATAGCGTTACCAGTCTGAGAACTATGGTCAATCTTGGCTCTGAGGTGTACGTGCAAGCAGAAGTGCCCAATACACAACACATATTTGTGGATATAGGCATGGGATTCCATGTGGAGTTTACCTGGTCTGAAGCTTTAAACTTCATAGAGAAAAGGGAAGAAAAGATCACAAGGCAGATAGAGGAGTACACTAAACTAATTGCTTCAATCAAAGCCCAAATTAAACTGGTTTGTGAAGGGATTAGAGAATTACTTGATCTTCCAGCTGAGAAACCCTTACCAGAACGGAGATTTTGA

Protein sequence

>Msa0765910

MDNLRQQKIQKYEEFVDKRLKPDLLHVTAQSADLRRNIENLEKNSVTSLRTMVNLGSEVYVQAEVPNTQHIFVDIGMGFHVEFTWSEALNFIEKREEKITRQIEEYTKLIASIKAQIKLVCEGIRELLDLPAEKPLPERRF*