AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0844570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0844570 MtrunA17_Chr5g0415441 90.405 469 44 1 1 469 1 468 0.0 882
Msa0844570 MtrunA17_Chr5g0415461 88.514 148 17 0 163 310 1 148 3.28e-94 281
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0844570 AT1G27150.1 61.538 468 180 0 1 468 1 468 0.0 605
Msa0844570 AT1G27110.1 57.569 469 198 1 1 468 12 480 0.0 538
Msa0844570 AT1G27110.4 58.081 396 165 1 1 395 12 407 8.08e-158 455
Msa0844570 AT1G27110.3 57.650 366 154 1 105 469 2 367 6.05e-149 429
Msa0844570 AT1G27110.2 58.562 292 120 1 105 395 2 293 3.12e-117 347

Find 108 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCATTGCCATCAAAATT+TGG 0.146676 5_4:-23095780 None:intergenic
ATTGTTATTCACTCCTTCTT+TGG 0.216539 5_4:-23091878 None:intergenic
TTCTCTATCCCTTGTTAATC+AGG 0.241617 5_4:+23093957 Msa0844570:CDS
AAAGCAGAAGATCTTCTTAC+AGG 0.262828 5_4:+23095026 Msa0844570:CDS
GTTGATTTCAAATCCTCTTT+TGG 0.280915 5_4:-23094207 None:intergenic
TAGAGAGAGATGTGTGATTA+TGG 0.283212 5_4:+23092121 Msa0844570:CDS
CATGGTTATGTGAAGGTAAT+TGG 0.330303 5_4:+23096082 Msa0844570:intron
TTGATGTATTCAACGAAGTT+TGG 0.334666 5_4:+23096122 Msa0844570:CDS
AAAGCAGTTCCCAAGAGATT+TGG 0.342502 5_4:+23093882 Msa0844570:CDS
GAAGGAGAAAATTACATATA+TGG 0.350885 5_4:+23094128 Msa0844570:CDS
GAGACGGCACAGCTTTCTTA+TGG 0.361307 5_4:+23096291 Msa0844570:CDS
GTGACGAGGATTGATGTTAA+AGG 0.369301 5_4:+23091806 Msa0844570:five_prime_UTR
AGCTTTCTTATGGCGTTTGC+TGG 0.374537 5_4:+23096301 Msa0844570:CDS
AATCCAATGTTTAGGCAAAC+TGG 0.374954 5_4:+23094940 Msa0844570:intron
AAACAACAAATAATGCAAAA+AGG 0.378736 5_4:+23095161 Msa0844570:CDS
AGGTATATGACAATTATATA+TGG 0.380439 5_4:+23094598 Msa0844570:CDS
TGTAGCACTTTGTTACTTAG+AGG 0.383596 5_4:+23094548 Msa0844570:CDS
GCAGAAGCACTTTATGCATA+TGG 0.394080 5_4:+23095720 Msa0844570:CDS
TTCTCAACGTGATCTCAATC+AGG 0.401365 5_4:-23097087 None:intergenic
TCAATGAAGGTTCTTAGTTA+TGG 0.408223 5_4:+23092098 Msa0844570:intron
TTTAGAGAAGCCAAATCTCT+TGG 0.410532 5_4:-23093892 None:intergenic
TGAGTAAGTTGTGGTTGGTT+AGG 0.425062 5_4:+23096849 Msa0844570:three_prime_UTR
AGAAGGAGTGAATAACAATA+TGG 0.428096 5_4:+23091882 Msa0844570:exon
TTGTGAAACCTGTTGGTAAT+AGG 0.428649 5_4:-23091980 None:intergenic
TTTGCAATTGCAGCAGCGTC+TGG 0.428835 5_4:-23096606 None:intergenic
TTCTGCTTTAGAAATTTGTC+CGG 0.442708 5_4:-23095012 None:intergenic
TATCTTATTGTAGGATTTCG+AGG 0.444796 5_4:+23095126 Msa0844570:intron
TATAATAATGATGATGTCCT+TGG 0.448126 5_4:+23097022 Msa0844570:three_prime_UTR
TTAGAGAAGCCAAATCTCTT+GGG 0.456999 5_4:-23093891 None:intergenic
GATACTAGCAGGTTCAACTT+TGG 0.458537 5_4:+23096961 Msa0844570:three_prime_UTR
TTCTTACAGGCTTAAAAGAA+AGG 0.462809 5_4:+23095039 Msa0844570:CDS
ACAAATCCTGTGTTTCTACA+TGG 0.463773 5_4:+23093921 Msa0844570:CDS
GTTAATAAAATGAGCTGCTA+AGG 0.468183 5_4:-23092183 None:intergenic
TCACAGAATCAAATCATAAC+CGG 0.470671 5_4:+23096677 Msa0844570:three_prime_UTR
CATCAACTCCTATTACCAAC+AGG 0.471508 5_4:+23091972 Msa0844570:CDS
ACAAGGGATAGAGAAAGATC+AGG 0.475534 5_4:-23093949 None:intergenic
TTCCGTTATTGGAGCTTGGA+CGG 0.479517 5_4:+23094162 Msa0844570:CDS
ATTCACATTTCACATTGAAC+CGG 0.479947 5_4:-23096696 None:intergenic
AAACATGGACTGGAGTTACT+TGG 0.480215 5_4:+23095756 Msa0844570:CDS
TTGTCAGGTTGACACACAAT+TGG 0.480422 5_4:+23094520 Msa0844570:intron
ATAGGTTTACTTAAATGCTA+TGG 0.481913 5_4:+23094742 Msa0844570:intron
TGTATTGACAGTGTGGGCTT+TGG 0.484218 5_4:+23094983 Msa0844570:CDS
TACTATATTGCAACATGCTA+AGG 0.492111 5_4:-23096746 None:intergenic
GCTGAGGAAGCTGCCAAAAG+AGG 0.492957 5_4:+23094194 Msa0844570:CDS
AGCTGTTGAGTTTCATTACA+AGG 0.494876 5_4:+23093255 Msa0844570:CDS
ACTTAACAGCTTCTCTAAAA+CGG 0.499394 5_4:-23094383 None:intergenic
CATGTTGTGACCATCCATCT+TGG 0.500368 5_4:-23094232 None:intergenic
CTTGTTGAGTAAGTTGTGGT+TGG 0.518601 5_4:+23096844 Msa0844570:three_prime_UTR
ATCCGTCCAAGCTCCAATAA+CGG 0.519593 5_4:-23094164 None:intergenic
TTTGAAATCAACAACCAAGA+TGG 0.521124 5_4:+23094218 Msa0844570:CDS
ATCTTAGCAGCATCAACAAA+AGG 0.521851 5_4:-23097059 None:intergenic
GTTTACATTCTGATACTAGC+AGG 0.523768 5_4:+23096950 Msa0844570:three_prime_UTR
GAAAACTAGTTTCTCGTACA+AGG 0.523903 5_4:-23093188 None:intergenic
ACCTCGAGCACGCTTTGCGT+TGG 0.527580 5_4:-23094579 None:intergenic
GTTGTGCGTGCGTGATGAGT+TGG 0.533789 5_4:+23094778 Msa0844570:CDS
GCATAAGCTATCATTACCAT+AGG 0.535527 5_4:+23096719 Msa0844570:three_prime_UTR
GCACTTTATGCATATGGAAG+AGG 0.535799 5_4:+23095726 Msa0844570:CDS
GTAAGTTGTGGTTGGTTAGG+AGG 0.536916 5_4:+23096852 Msa0844570:three_prime_UTR
TCAGGTTGACACACAATTGG+TGG 0.537033 5_4:+23094523 Msa0844570:intron
GAACAGCGGAGACGCGATGA+AGG 0.539744 5_4:+23096159 Msa0844570:CDS
GGAGTGAATAACAATATGGA+AGG 0.547753 5_4:+23091886 Msa0844570:exon
AGGTAACGACAAACATGGAC+TGG 0.552737 5_4:+23095746 Msa0844570:CDS
GTGTGGGCTTTGGCAAAGAC+CGG 0.553062 5_4:+23094993 Msa0844570:CDS
TGAATAACAATATGGAAGGA+AGG 0.553802 5_4:+23091890 Msa0844570:exon
TGCCATCAGTTATTTGATGT+CGG 0.555331 5_4:+23093213 Msa0844570:CDS
TGTATCATAACTTACTTGAT+CGG 0.558733 5_4:-23094843 None:intergenic
TCCTACACGATCCAGTTACA+TGG 0.568221 5_4:+23091830 Msa0844570:five_prime_UTR
GTAGCACTTTGTTACTTAGA+GGG 0.570256 5_4:+23094549 Msa0844570:CDS
AACTGATGCCGCAGTTCCTG+AGG 0.571703 5_4:+23094635 Msa0844570:CDS
CAAGGGATAGAGAAAGATCA+GGG 0.572407 5_4:-23093948 None:intergenic
CTAGCAGGTTCAACTTTGGA+CGG 0.573919 5_4:+23096965 Msa0844570:three_prime_UTR
TATGAAATGAATGTAACTCA+TGG 0.576173 5_4:+23096773 Msa0844570:three_prime_UTR
ATGCTATGGCTCTGCTTCTG+CGG 0.576856 5_4:+23094756 Msa0844570:CDS
TTCCGACATCAAATAACTGA+TGG 0.581209 5_4:-23093215 None:intergenic
AGGCAAACTGGTATTTAGAG+TGG 0.584151 5_4:+23094952 Msa0844570:intron
TGAAAGAATGTTCTTCGTCG+TGG 0.586473 5_4:+23094409 Msa0844570:CDS
AAATCAACAACCAAGATGGA+TGG 0.588332 5_4:+23094222 Msa0844570:CDS
AACATGCTAAGGAGTCCCTA+TGG 0.591024 5_4:-23096735 None:intergenic
CAAATCCTGTGTTTCTACAT+GGG 0.594367 5_4:+23093922 Msa0844570:CDS
CATGCTTGTTGAGTAAGTTG+TGG 0.598342 5_4:+23096840 Msa0844570:three_prime_UTR
CATAAGCTATCATTACCATA+GGG 0.598705 5_4:+23096720 Msa0844570:three_prime_UTR
CCCACACTGTCAATACATCA+AGG 0.606762 5_4:-23094977 None:intergenic
ATATGACAATTATATATGGA+AGG 0.612918 5_4:+23094602 Msa0844570:CDS
CTTAGCAGCATTAAGCAAAG+AGG 0.618782 5_4:-23092228 None:intergenic
GAAAAGGAACCTGATTAACA+AGG 0.618904 5_4:-23093966 None:intergenic
AAGCGAATCAAGAAGAGAGA+CGG 0.620890 5_4:+23096275 Msa0844570:CDS
AACAGCGGAGACGCGATGAA+GGG 0.622093 5_4:+23096160 Msa0844570:CDS
TGGACGGATGAGAGAAGCTG+AGG 0.624501 5_4:+23094178 Msa0844570:CDS
ACCTTGATGTATTGACAGTG+TGG 0.628634 5_4:+23094976 Msa0844570:CDS
CATAACTTACTTGATCGGCT+AGG 0.630902 5_4:-23094838 None:intergenic
GGCAACCCATGTAGAAACAC+AGG 0.631216 5_4:-23093927 None:intergenic
GGAAGAGGTAACGACAAACA+TGG 0.632216 5_4:+23095741 Msa0844570:CDS
TCCAACGCAAAGCGTGCTCG+AGG 0.636232 5_4:+23094578 Msa0844570:CDS
AGGATCAAATTAAACGACTG+TGG 0.636904 5_4:+23091910 Msa0844570:CDS
AGAGATTCCACTTACAAGGT+GGG 0.637210 5_4:-23092252 None:intergenic
CACAACTTACTCAACAAGCA+TGG 0.637905 5_4:-23096839 None:intergenic
GGCACTCATACTGAAGAACA+TGG 0.646723 5_4:-23094362 None:intergenic
ATCGTGCACCTCAGGAACTG+CGG 0.648673 5_4:-23094643 None:intergenic
AAAAGGAACCTGATTAACAA+GGG 0.651342 5_4:-23093965 None:intergenic
ACGTACGTAGAAAGAGACAG+AGG 0.661147 5_4:+23091781 Msa0844570:five_prime_UTR
CCTTGATGTATTGACAGTGT+GGG 0.661911 5_4:+23094977 Msa0844570:CDS
TACATCATGTTGCTGAACAG+CGG 0.662080 5_4:+23096145 Msa0844570:CDS
ATTAAACGACTGTGGATACG+AGG 0.667629 5_4:+23091918 Msa0844570:CDS
CAGTCATGACAATGACAATG+AGG 0.668032 5_4:+23096816 Msa0844570:three_prime_UTR
ATGTGTGATTATGGAAGCAG+TGG 0.671233 5_4:+23092130 Msa0844570:CDS
AAGAGACAGAGGAAGTGACG+AGG 0.679235 5_4:+23091792 Msa0844570:five_prime_UTR
CAGGTTCTACCGCAAAACGA+AGG 0.698632 5_4:+23094110 Msa0844570:intron
TCCATGTAACTGGATCGTGT+AGG 0.719793 5_4:-23091831 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATTGATATGATAA+GGG - chr5_4:23092014-23092033 None:intergenic 10.0%
!! AAAAAAAAATTGATATGATA+AGG - chr5_4:23092015-23092034 None:intergenic 10.0%
!!! TATTTACATATTATTTTAAC+AGG + chr5_4:23093662-23093681 Msa0844570:intron 10.0%
!!! TATTAATTTTTCCTATTTAA+AGG + chr5_4:23094038-23094057 Msa0844570:intron 10.0%
!!! TTTTAAATTACTATAACTAC+AGG - chr5_4:23092415-23092434 None:intergenic 15.0%
!!! TATGTTATTTCATATTTACA+AGG + chr5_4:23092803-23092822 Msa0844570:intron 15.0%
!!! TATTTTTTTTTTACCAAACA+GGG + chr5_4:23092877-23092896 Msa0844570:intron 15.0%
!! TCAATGTATTTGTAAAAAAT+TGG + chr5_4:23094262-23094281 Msa0844570:intron 15.0%
!! AGGAAATTATTAATAATGAA+AGG - chr5_4:23096435-23096454 None:intergenic 15.0%
!!! TAATTTTCATTCATGAAAAA+GGG - chr5_4:23096892-23096911 None:intergenic 15.0%
!!! ATAATTTTCATTCATGAAAA+AGG - chr5_4:23096893-23096912 None:intergenic 15.0%
!! ACTTGATGGAAAATAAAAAA+GGG - chr5_4:23092316-23092335 None:intergenic 20.0%
!! AACTTGATGGAAAATAAAAA+AGG - chr5_4:23092317-23092336 None:intergenic 20.0%
!!! TTTTTATTTTCCATCAAGTT+AGG + chr5_4:23092317-23092336 Msa0844570:intron 20.0%
!!! TTTTATTTTCCATCAAGTTA+GGG + chr5_4:23092318-23092337 Msa0844570:intron 20.0%
!!! AAAAAAAAATAGTGGATAGT+TGG - chr5_4:23092868-23092887 None:intergenic 20.0%
!! GTTTGGTAAAAAAAAAATAG+TGG - chr5_4:23092876-23092895 None:intergenic 20.0%
!!! CTATTTTTTTTTTACCAAAC+AGG + chr5_4:23092876-23092895 Msa0844570:intron 20.0%
!! AAATGCAATTAAATGAATGA+TGG - chr5_4:23092928-23092947 None:intergenic 20.0%
!! TTCCAAATAAATAATAAGTG+CGG + chr5_4:23093054-23093073 Msa0844570:intron 20.0%
!! AATAATAAACAGCAAGTATA+TGG + chr5_4:23093301-23093320 Msa0844570:intron 20.0%
!!! ATAATAACTGCTGAATATTT+TGG + chr5_4:23093539-23093558 Msa0844570:intron 20.0%
!! TTGGAAAATAAATTTAGTGT+TGG + chr5_4:23093639-23093658 Msa0844570:intron 20.0%
!!! TTGTTATTATATGTGTTGAA+TGG + chr5_4:23093698-23093717 Msa0844570:intron 20.0%
!! ATAAAACTGTACCTTTAAAT+AGG - chr5_4:23094052-23094071 None:intergenic 20.0%
!! AGGTATATGACAATTATATA+TGG + chr5_4:23094598-23094617 Msa0844570:CDS 20.0%
!! ATATGACAATTATATATGGA+AGG + chr5_4:23094602-23094621 Msa0844570:CDS 20.0%
!! TAATTTAAACTCTCAATTCT+TGG + chr5_4:23094914-23094933 Msa0844570:intron 20.0%
!! ATAACATGTTATCTTATTGT+AGG + chr5_4:23095117-23095136 Msa0844570:intron 20.0%
!! AAACAACAAATAATGCAAAA+AGG + chr5_4:23095161-23095180 Msa0844570:CDS 20.0%
!! TTTAGTAACATTACTAGTTA+AGG - chr5_4:23095289-23095308 None:intergenic 20.0%
!! TAGTAATGTTACTAAAAATG+AGG + chr5_4:23095293-23095312 Msa0844570:intron 20.0%
!! AGTAATGTTACTAAAAATGA+GGG + chr5_4:23095294-23095313 Msa0844570:intron 20.0%
!! TGGAAAAACATGTTAATTAA+GGG - chr5_4:23095549-23095568 None:intergenic 20.0%
!! TTGGAAAAACATGTTAATTA+AGG - chr5_4:23095550-23095569 None:intergenic 20.0%
!!! GACTATATTTTGATTTTTCT+TGG + chr5_4:23095657-23095676 Msa0844570:intron 20.0%
!!! TTTTGGAATTAATAATGTCA+TGG + chr5_4:23096064-23096083 Msa0844570:intron 20.0%
!! ATTATTGAATCATTTGATTC+TGG + chr5_4:23096337-23096356 Msa0844570:intron 20.0%
!! TTATTGAATCATTTGATTCT+GGG + chr5_4:23096338-23096357 Msa0844570:intron 20.0%
!!! ATAAAAGTAAACACTCATTT+TGG - chr5_4:23096501-23096520 None:intergenic 20.0%
!!! AAAATGAGTGTTTACTTTTA+TGG + chr5_4:23096500-23096519 Msa0844570:intron 20.0%
!!! CTTCATTATTTTTTACTTTC+AGG + chr5_4:23096557-23096576 Msa0844570:intron 20.0%
! AAAAATAATAAGACCCTGTT+TGG - chr5_4:23092893-23092912 None:intergenic 25.0%
!!! TGTAGATTTTTTTGTGCTTT+TGG + chr5_4:23092962-23092981 Msa0844570:intron 25.0%
! AATTGCAATTAAGAAAGAGT+AGG + chr5_4:23093023-23093042 Msa0844570:intron 25.0%
! ATTGCAATTAAGAAAGAGTA+GGG + chr5_4:23093024-23093043 Msa0844570:intron 25.0%
! TCCAAATAAATAATAAGTGC+GGG + chr5_4:23093055-23093074 Msa0844570:intron 25.0%
!!! GATAAGTGTTTTGATATTAC+AGG + chr5_4:23093156-23093175 Msa0844570:intron 25.0%
! AGAGAAATCTATGAACAAAA+AGG + chr5_4:23093346-23093365 Msa0844570:intron 25.0%
! AAAACCATGAATAACAAACT+TGG - chr5_4:23093463-23093482 None:intergenic 25.0%
! AACCATAAATAAATCCCAAA+AGG + chr5_4:23093606-23093625 Msa0844570:intron 25.0%
! GAAATGTTGTGTAATTGAAA+AGG - chr5_4:23093985-23094004 None:intergenic 25.0%
! GAAGGAGAAAATTACATATA+TGG + chr5_4:23094128-23094147 Msa0844570:CDS 25.0%
! TATAGAGTTATCAATTTGTC+AGG + chr5_4:23094505-23094524 Msa0844570:intron 25.0%
!! AGTAAACCTATTTTCAAATG+AGG - chr5_4:23094733-23094752 None:intergenic 25.0%
! ATAGGTTTACTTAAATGCTA+TGG + chr5_4:23094742-23094761 Msa0844570:intron 25.0%
! TGTATCATAACTTACTTGAT+CGG - chr5_4:23094846-23094865 None:intergenic 25.0%
! AGTGCATGATATATAAACAA+AGG + chr5_4:23094867-23094886 Msa0844570:intron 25.0%
! AAACAAAGGAAATGTTCATT+TGG + chr5_4:23094881-23094900 Msa0844570:intron 25.0%
! GTAATGTTACTAAAAATGAG+GGG + chr5_4:23095295-23095314 Msa0844570:intron 25.0%
! AAATTGTTTGTGATAGCTTA+TGG + chr5_4:23095368-23095387 Msa0844570:intron 25.0%
!! ATTAACATGTTTTTCCAAAC+AGG + chr5_4:23095552-23095571 Msa0844570:intron 25.0%
!! TTAACATGTTTTTCCAAACA+GGG + chr5_4:23095553-23095572 Msa0844570:intron 25.0%
! TTCTGTAACAATATTAGTCA+AGG - chr5_4:23095607-23095626 None:intergenic 25.0%
! AAATCAAAATATAGTCCACT+TGG - chr5_4:23095653-23095672 None:intergenic 25.0%
!!! TTTGATTTTGCTGTATGATA+CGG + chr5_4:23096402-23096421 Msa0844570:intron 25.0%
!!! CTCATTTTGGTTCTTAAAAA+TGG - chr5_4:23096488-23096507 None:intergenic 25.0%
! AATTGCAAATGAAAAAGCTA+AGG + chr5_4:23096620-23096639 Msa0844570:CDS 25.0%
! TATGAAATGAATGTAACTCA+TGG + chr5_4:23096773-23096792 Msa0844570:three_prime_UTR 25.0%
!! TATAATAATGATGATGTCCT+TGG + chr5_4:23097022-23097041 Msa0844570:three_prime_UTR 25.0%
! TCTTATGTTTTCCATGTAAC+TGG - chr5_4:23091844-23091863 None:intergenic 30.0%
! ATTGTTATTCACTCCTTCTT+TGG - chr5_4:23091881-23091900 None:intergenic 30.0%
AGAAGGAGTGAATAACAATA+TGG + chr5_4:23091882-23091901 Msa0844570:exon 30.0%
TGAATAACAATATGGAAGGA+AGG + chr5_4:23091890-23091909 Msa0844570:exon 30.0%
! CTTTTCGATGTTTTCAATGA+AGG + chr5_4:23092085-23092104 Msa0844570:intron 30.0%
TCAATGAAGGTTCTTAGTTA+TGG + chr5_4:23092098-23092117 Msa0844570:intron 30.0%
GTTAATAAAATGAGCTGCTA+AGG - chr5_4:23092186-23092205 None:intergenic 30.0%
ATCTAATAAGCTATAAGCCA+CGG - chr5_4:23092646-23092665 None:intergenic 30.0%
GTAGTGTTTGGTAAAATTAG+CGG - chr5_4:23092837-23092856 None:intergenic 30.0%
!! TGGTGATTTTGGTAAACTAA+GGG - chr5_4:23092989-23093008 None:intergenic 30.0%
!! TTGGTGATTTTGGTAAACTA+AGG - chr5_4:23092990-23093009 None:intergenic 30.0%
!! ATTCGCAAAATTGGTGATTT+TGG - chr5_4:23093000-23093019 None:intergenic 30.0%
!!! GCAATTTTGATTCGCAAAAT+TGG - chr5_4:23093009-23093028 None:intergenic 30.0%
CCAAATAAATAATAAGTGCG+GGG + chr5_4:23093056-23093075 Msa0844570:intron 30.0%
!!! TGCCTTTTGGGATTTATTTA+TGG - chr5_4:23093611-23093630 None:intergenic 30.0%
AAAGAGTTTGAGTAGAAACA+TGG - chr5_4:23093828-23093847 None:intergenic 30.0%
AAAAGGAACCTGATTAACAA+GGG - chr5_4:23093968-23093987 None:intergenic 30.0%
! TAATTTTCTCCTTCGTTTTG+CGG - chr5_4:23094122-23094141 None:intergenic 30.0%
!! GTTGATTTCAAATCCTCTTT+TGG - chr5_4:23094210-23094229 None:intergenic 30.0%
! TTTGAAATCAACAACCAAGA+TGG + chr5_4:23094218-23094237 Msa0844570:CDS 30.0%
! ACTTAACAGCTTCTCTAAAA+CGG - chr5_4:23094386-23094405 None:intergenic 30.0%
GCAGTTTATTCATTTGAAGA+TGG + chr5_4:23094456-23094475 Msa0844570:intron 30.0%
TTCTGACCTCATTTGAAAAT+AGG + chr5_4:23094724-23094743 Msa0844570:intron 30.0%
AAAGGAAATGTTCATTTGGA+AGG + chr5_4:23094885-23094904 Msa0844570:intron 30.0%
CTTGGATTAATCCAATGTTT+AGG + chr5_4:23094932-23094951 Msa0844570:intron 30.0%
!! TTCTGCTTTAGAAATTTGTC+CGG - chr5_4:23095015-23095034 None:intergenic 30.0%
TTCTTACAGGCTTAAAAGAA+AGG + chr5_4:23095039-23095058 Msa0844570:CDS 30.0%
!! AAAGTGTTTTAGATGAAGTG+CGG + chr5_4:23095082-23095101 Msa0844570:intron 30.0%
TATCTTATTGTAGGATTTCG+AGG + chr5_4:23095126-23095145 Msa0844570:intron 30.0%
AATAATGCAAAAAGGAATGC+TGG + chr5_4:23095169-23095188 Msa0844570:CDS 30.0%
! TTTTCATCTAATCACTGAAG+TGG - chr5_4:23095208-23095227 None:intergenic 30.0%
TAAGGAAATAAGCTGAAAAC+AGG - chr5_4:23095424-23095443 None:intergenic 30.0%
! TAGCTATTCTAGAGAACTTA+AGG - chr5_4:23095442-23095461 None:intergenic 30.0%
GCTAGGTTAAAATGAAGAAA+TGG - chr5_4:23095698-23095717 None:intergenic 30.0%
! TTACTTGGTCCAAATTTTGA+TGG + chr5_4:23095771-23095790 Msa0844570:CDS 30.0%
CAATCATTGCCATCAAAATT+TGG - chr5_4:23095783-23095802 None:intergenic 30.0%
GATGGTTCAGATTTCAAATT+TGG - chr5_4:23095943-23095962 None:intergenic 30.0%
!!! TCTTCACTTCTTTCGTTTTT+TGG + chr5_4:23096047-23096066 Msa0844570:intron 30.0%
ATAATGTCATGGTTATGTGA+AGG + chr5_4:23096075-23096094 Msa0844570:intron 30.0%
TTGATGTATTCAACGAAGTT+TGG + chr5_4:23096122-23096141 Msa0844570:CDS 30.0%
AATTGAAGATGACTGATGAT+GGG - chr5_4:23096219-23096238 None:intergenic 30.0%
TAATTGAAGATGACTGATGA+TGG - chr5_4:23096220-23096239 None:intergenic 30.0%
GTATCATACAGCAAAATCAA+AGG - chr5_4:23096403-23096422 None:intergenic 30.0%
!! TAATAATTTCCTTGCTGTTG+AGG + chr5_4:23096443-23096462 Msa0844570:intron 30.0%
!!! ATTTTTTACTTTCAGGAGAG+AGG + chr5_4:23096564-23096583 Msa0844570:intron 30.0%
TCACAGAATCAAATCATAAC+CGG + chr5_4:23096677-23096696 Msa0844570:three_prime_UTR 30.0%
ATTCACATTTCACATTGAAC+CGG - chr5_4:23096699-23096718 None:intergenic 30.0%
CATAAGCTATCATTACCATA+GGG + chr5_4:23096720-23096739 Msa0844570:three_prime_UTR 30.0%
TACTATATTGCAACATGCTA+AGG - chr5_4:23096749-23096768 None:intergenic 30.0%
TTTCATTCATGAAAAAGGGA+GGG - chr5_4:23096888-23096907 None:intergenic 30.0%
! TTTTCATTCATGAAAAAGGG+AGG - chr5_4:23096889-23096908 None:intergenic 30.0%
GACATAGCAAAAACCAAAGA+AGG + chr5_4:23091865-23091884 Msa0844570:five_prime_UTR 35.0%
GGAGTGAATAACAATATGGA+AGG + chr5_4:23091886-23091905 Msa0844570:exon 35.0%
AGGATCAAATTAAACGACTG+TGG + chr5_4:23091910-23091929 Msa0844570:CDS 35.0%
!! TTGTGAAACCTGTTGGTAAT+AGG - chr5_4:23091983-23092002 None:intergenic 35.0%
TCATATGTTGTGAAACCTGT+TGG - chr5_4:23091990-23092009 None:intergenic 35.0%
TAGAGAGAGATGTGTGATTA+TGG + chr5_4:23092121-23092140 Msa0844570:CDS 35.0%
AATGAGAGATTCCACTTACA+AGG - chr5_4:23092259-23092278 None:intergenic 35.0%
AAAAAGAGACCCTAACTTGA+TGG - chr5_4:23092330-23092349 None:intergenic 35.0%
! AGCTTTGCTCTGGTTTAAAA+TGG - chr5_4:23092509-23092528 None:intergenic 35.0%
TCTAATAAGCTATAAGCCAC+GGG - chr5_4:23092645-23092664 None:intergenic 35.0%
TTGGTTGAATTCGTAGTGTT+TGG - chr5_4:23092849-23092868 None:intergenic 35.0%
CAATTAAGAAAGAGTAGGGA+CGG + chr5_4:23093028-23093047 Msa0844570:intron 35.0%
CCCCGCACTTATTATTTATT+TGG - chr5_4:23093059-23093078 None:intergenic 35.0%
! GAAAACTAGTTTCTCGTACA+AGG - chr5_4:23093191-23093210 None:intergenic 35.0%
TGCCATCAGTTATTTGATGT+CGG + chr5_4:23093213-23093232 Msa0844570:CDS 35.0%
TTCCGACATCAAATAACTGA+TGG - chr5_4:23093218-23093237 None:intergenic 35.0%
AGCTGTTGAGTTTCATTACA+AGG + chr5_4:23093255-23093274 Msa0844570:CDS 35.0%
GATCTCAAGATTCATGTGTA+TGG - chr5_4:23093413-23093432 None:intergenic 35.0%
AACCCAAAACTACATGCTTT+AGG + chr5_4:23093434-23093453 Msa0844570:intron 35.0%
! TGCCTAAAGCATGTAGTTTT+GGG - chr5_4:23093439-23093458 None:intergenic 35.0%
! ATGCCTAAAGCATGTAGTTT+TGG - chr5_4:23093440-23093459 None:intergenic 35.0%
!! GCATCCAAGTTTGTTATTCA+TGG + chr5_4:23093456-23093475 Msa0844570:intron 35.0%
! CCAATAACATGTTGCCTTTT+GGG - chr5_4:23093623-23093642 None:intergenic 35.0%
! TCCAATAACATGTTGCCTTT+TGG - chr5_4:23093624-23093643 None:intergenic 35.0%
GAGAGAGAAAAAAAACAGTG+CGG - chr5_4:23093775-23093794 None:intergenic 35.0%
TTAGAGAAGCCAAATCTCTT+GGG - chr5_4:23093894-23093913 None:intergenic 35.0%
TTTAGAGAAGCCAAATCTCT+TGG - chr5_4:23093895-23093914 None:intergenic 35.0%
! ACAAATCCTGTGTTTCTACA+TGG + chr5_4:23093921-23093940 Msa0844570:CDS 35.0%
! CAAATCCTGTGTTTCTACAT+GGG + chr5_4:23093922-23093941 Msa0844570:CDS 35.0%
TTCTCTATCCCTTGTTAATC+AGG + chr5_4:23093957-23093976 Msa0844570:CDS 35.0%
GAAAAGGAACCTGATTAACA+AGG - chr5_4:23093969-23093988 None:intergenic 35.0%
CTGTGAAACTTAGAAGGATA+AGG - chr5_4:23094093-23094112 None:intergenic 35.0%
CTTATCCTTCTAAGTTTCAC+AGG + chr5_4:23094091-23094110 Msa0844570:intron 35.0%
TAGAACCTGTGAAACTTAGA+AGG - chr5_4:23094099-23094118 None:intergenic 35.0%
AAATCAACAACCAAGATGGA+TGG + chr5_4:23094222-23094241 Msa0844570:CDS 35.0%
! TGTAGCACTTTGTTACTTAG+AGG + chr5_4:23094548-23094567 Msa0844570:CDS 35.0%
! GTAGCACTTTGTTACTTAGA+GGG + chr5_4:23094549-23094568 Msa0844570:CDS 35.0%
GAGGTCAGAATTCATAACAA+AGG - chr5_4:23094714-23094733 None:intergenic 35.0%
AATCCAATGTTTAGGCAAAC+TGG + chr5_4:23094940-23094959 Msa0844570:intron 35.0%
ATACCAGTTTGCCTAAACAT+TGG - chr5_4:23094946-23094965 None:intergenic 35.0%
AAAGCAGAAGATCTTCTTAC+AGG + chr5_4:23095026-23095045 Msa0844570:CDS 35.0%
TTACAGGCTTAAAAGAAAGG+TGG + chr5_4:23095042-23095061 Msa0844570:intron 35.0%
CTAATCGATTAGGCATACTA+CGG - chr5_4:23095238-23095257 None:intergenic 35.0%
AAATCGCTCACTAATCGATT+AGG - chr5_4:23095248-23095267 None:intergenic 35.0%
!! TTTTGATGGCAATGATTGCA+AGG + chr5_4:23095785-23095804 Msa0844570:CDS 35.0%
AAGAAGTGAAGACACAATAC+TGG - chr5_4:23096039-23096058 None:intergenic 35.0%
CATGGTTATGTGAAGGTAAT+TGG + chr5_4:23096082-23096101 Msa0844570:intron 35.0%
TTCTCAATCACTTCAATTGC+TGG - chr5_4:23096257-23096276 None:intergenic 35.0%
TGGTTCTTAAAAATGGCAGA+CGG - chr5_4:23096481-23096500 None:intergenic 35.0%
GCATAAGCTATCATTACCAT+AGG + chr5_4:23096719-23096738 Msa0844570:three_prime_UTR 35.0%
TTCATTCATGAAAAAGGGAG+GGG - chr5_4:23096887-23096906 None:intergenic 35.0%
GTTTACATTCTGATACTAGC+AGG + chr5_4:23096950-23096969 Msa0844570:three_prime_UTR 35.0%
! AGGACAGTTTTTACTTTCCA+AGG - chr5_4:23097042-23097061 None:intergenic 35.0%
ATCTTAGCAGCATCAACAAA+AGG - chr5_4:23097062-23097081 None:intergenic 35.0%
! TTTTGTTGATGCTGCTAAGA+TGG + chr5_4:23097061-23097080 Msa0844570:three_prime_UTR 35.0%
GTGACGAGGATTGATGTTAA+AGG + chr5_4:23091806-23091825 Msa0844570:five_prime_UTR 40.0%
ATTAAACGACTGTGGATACG+AGG + chr5_4:23091918-23091937 Msa0844570:CDS 40.0%
CATCAACTCCTATTACCAAC+AGG + chr5_4:23091972-23091991 Msa0844570:CDS 40.0%
ATGTGTGATTATGGAAGCAG+TGG + chr5_4:23092130-23092149 Msa0844570:CDS 40.0%
CTTAGCAGCATTAAGCAAAG+AGG - chr5_4:23092231-23092250 None:intergenic 40.0%
AGAGATTCCACTTACAAGGT+GGG - chr5_4:23092255-23092274 None:intergenic 40.0%
AAAACTCAGTATCCGTCACA+TGG + chr5_4:23092437-23092456 Msa0844570:intron 40.0%
!! TTTCGGTGGGTTAATCCATA+CGG - chr5_4:23092532-23092551 None:intergenic 40.0%
! ATGGATTAACCCACCGAAAT+TGG + chr5_4:23092533-23092552 Msa0844570:intron 40.0%
ATTCCTCTGGGTACCAATTT+CGG - chr5_4:23092549-23092568 None:intergenic 40.0%
CTCTCAGATTTGATTCCTCT+GGG - chr5_4:23092561-23092580 None:intergenic 40.0%
TCTCTCAGATTTGATTCCTC+TGG - chr5_4:23092562-23092581 None:intergenic 40.0%
! ATTGAAAGAAGCACACTCCA+AGG + chr5_4:23092583-23092602 Msa0844570:intron 40.0%
GCAGTGCTAAAAACAATTCC+TGG + chr5_4:23093494-23093513 Msa0844570:intron 40.0%
TCTAAGTTTGTGTGCATTCC+AGG - chr5_4:23093515-23093534 None:intergenic 40.0%
TGGAATGCACACAAACTTAG+AGG + chr5_4:23093514-23093533 Msa0844570:intron 40.0%
CCCAAAAGGCAACATGTTAT+TGG + chr5_4:23093620-23093639 Msa0844570:intron 40.0%
AAAGCAGTTCCCAAGAGATT+TGG + chr5_4:23093882-23093901 Msa0844570:CDS 40.0%
CAAGGGATAGAGAAAGATCA+GGG - chr5_4:23093951-23093970 None:intergenic 40.0%
ACAAGGGATAGAGAAAGATC+AGG - chr5_4:23093952-23093971 None:intergenic 40.0%
!! CATGCTTGCTTTTCCGTTAT+TGG + chr5_4:23094151-23094170 Msa0844570:CDS 40.0%
TGAAAGAATGTTCTTCGTCG+TGG + chr5_4:23094409-23094428 Msa0844570:CDS 40.0%
!! TTGTCAGGTTGACACACAAT+TGG + chr5_4:23094520-23094539 Msa0844570:intron 40.0%
TCAATAAAATCGTGCACCTC+AGG - chr5_4:23094654-23094673 None:intergenic 40.0%
!!! CGTGATGAGTTGGAGTTTTT+TGG + chr5_4:23094788-23094807 Msa0844570:CDS 40.0%
CATAACTTACTTGATCGGCT+AGG - chr5_4:23094841-23094860 None:intergenic 40.0%
AGGCAAACTGGTATTTAGAG+TGG + chr5_4:23094952-23094971 Msa0844570:intron 40.0%
! ACCTTGATGTATTGACAGTG+TGG + chr5_4:23094976-23094995 Msa0844570:CDS 40.0%
! CCTTGATGTATTGACAGTGT+GGG + chr5_4:23094977-23094996 Msa0844570:CDS 40.0%
CTAAAAATGAGGGGTCTGTT+TGG + chr5_4:23095304-23095323 Msa0844570:intron 40.0%
ACTAATTGCTTCTCACACTC+AGG - chr5_4:23095579-23095598 None:intergenic 40.0%
! ATAAAGTGCTTCTGCAAGCT+AGG - chr5_4:23095715-23095734 None:intergenic 40.0%
!! GCAGAAGCACTTTATGCATA+TGG + chr5_4:23095720-23095739 Msa0844570:CDS 40.0%
GCACTTTATGCATATGGAAG+AGG + chr5_4:23095726-23095745 Msa0844570:CDS 40.0%
!! AAACATGGACTGGAGTTACT+TGG + chr5_4:23095756-23095775 Msa0844570:CDS 40.0%
ATCGTTGGATCTAGATAGGA+TGG - chr5_4:23095961-23095980 None:intergenic 40.0%
GACAATCGTTGGATCTAGAT+AGG - chr5_4:23095965-23095984 None:intergenic 40.0%
GTGAGTACAATGACAATCGT+TGG - chr5_4:23095976-23095995 None:intergenic 40.0%
TGTACTCACTATGTGAAACG+TGG + chr5_4:23095987-23096006 Msa0844570:intron 40.0%
TGAAGACACAATACTGGACT+TGG - chr5_4:23096033-23096052 None:intergenic 40.0%
TACATCATGTTGCTGAACAG+CGG + chr5_4:23096145-23096164 Msa0844570:CDS 40.0%
AAGCGAATCAAGAAGAGAGA+CGG + chr5_4:23096275-23096294 Msa0844570:CDS 40.0%
CAGTCATGACAATGACAATG+AGG + chr5_4:23096816-23096835 Msa0844570:three_prime_UTR 40.0%
CACAACTTACTCAACAAGCA+TGG - chr5_4:23096842-23096861 None:intergenic 40.0%
! CATGCTTGTTGAGTAAGTTG+TGG + chr5_4:23096840-23096859 Msa0844570:three_prime_UTR 40.0%
CTTGTTGAGTAAGTTGTGGT+TGG + chr5_4:23096844-23096863 Msa0844570:three_prime_UTR 40.0%
! TGAGTAAGTTGTGGTTGGTT+AGG + chr5_4:23096849-23096868 Msa0844570:three_prime_UTR 40.0%
GATACTAGCAGGTTCAACTT+TGG + chr5_4:23096961-23096980 Msa0844570:three_prime_UTR 40.0%
TTCTCAACGTGATCTCAATC+AGG - chr5_4:23097090-23097109 None:intergenic 40.0%
ACGTACGTAGAAAGAGACAG+AGG + chr5_4:23091781-23091800 Msa0844570:five_prime_UTR 45.0%
TCCTACACGATCCAGTTACA+TGG + chr5_4:23091830-23091849 Msa0844570:five_prime_UTR 45.0%
TCCATGTAACTGGATCGTGT+AGG - chr5_4:23091834-23091853 None:intergenic 45.0%
GAGAGATTCCACTTACAAGG+TGG - chr5_4:23092256-23092275 None:intergenic 45.0%
!! ATTGAACCCCTCGGATTAGT+CGG - chr5_4:23092464-23092483 None:intergenic 45.0%
ATAAGCCACGGGAACCATTT+GGG - chr5_4:23092634-23092653 None:intergenic 45.0%
TATAAGCCACGGGAACCATT+TGG - chr5_4:23092635-23092654 None:intergenic 45.0%
AAGTGCGGGGACTAAAATTG+AGG + chr5_4:23093069-23093088 Msa0844570:intron 45.0%
! GCTTTTCCGTTATTGGAGCT+TGG + chr5_4:23094158-23094177 Msa0844570:CDS 45.0%
TTCCGTTATTGGAGCTTGGA+CGG + chr5_4:23094162-23094181 Msa0844570:CDS 45.0%
ATCCGTCCAAGCTCCAATAA+CGG - chr5_4:23094167-23094186 None:intergenic 45.0%
CATGTTGTGACCATCCATCT+TGG - chr5_4:23094235-23094254 None:intergenic 45.0%
GGCACTCATACTGAAGAACA+TGG - chr5_4:23094365-23094384 None:intergenic 45.0%
!! TCAGGTTGACACACAATTGG+TGG + chr5_4:23094523-23094542 Msa0844570:intron 45.0%
CCCACACTGTCAATACATCA+AGG - chr5_4:23094980-23094999 None:intergenic 45.0%
! TGTATTGACAGTGTGGGCTT+TGG + chr5_4:23094983-23095002 Msa0844570:CDS 45.0%
ATTAGCAACGCTCATCCAAG+TGG + chr5_4:23095635-23095654 Msa0844570:intron 45.0%
GATTCACCCAGTTAGCACAT+TGG + chr5_4:23095850-23095869 Msa0844570:intron 45.0%
CGACTACCAATGTGCTAACT+GGG - chr5_4:23095859-23095878 None:intergenic 45.0%
ACGACTACCAATGTGCTAAC+TGG - chr5_4:23095860-23095879 None:intergenic 45.0%
! GTTAGCACATTGGTAGTCGT+TGG + chr5_4:23095860-23095879 Msa0844570:intron 45.0%
CAATACTGGACTTGGATTGC+TGG - chr5_4:23096025-23096044 None:intergenic 45.0%
AGCTTTCTTATGGCGTTTGC+TGG + chr5_4:23096301-23096320 Msa0844570:CDS 45.0%
AACATGCTAAGGAGTCCCTA+TGG - chr5_4:23096738-23096757 None:intergenic 45.0%
! GTAAGTTGTGGTTGGTTAGG+AGG + chr5_4:23096852-23096871 Msa0844570:three_prime_UTR 45.0%
ATTCATGAAAAAGGGAGGGG+AGG - chr5_4:23096884-23096903 None:intergenic 45.0%
CTAGCAGGTTCAACTTTGGA+CGG + chr5_4:23096965-23096984 Msa0844570:three_prime_UTR 45.0%
AAGAGACAGAGGAAGTGACG+AGG + chr5_4:23091792-23091811 Msa0844570:five_prime_UTR 50.0%
GCTAAGTCCCACCTTGTAAG+TGG + chr5_4:23092245-23092264 Msa0844570:intron 50.0%
!! GGATTAGTCGGTCCATGTGA+CGG - chr5_4:23092452-23092471 None:intergenic 50.0%
ACATGGACCGACTAATCCGA+GGG + chr5_4:23092454-23092473 Msa0844570:intron 50.0%
TTAAAATGGCCTCCCGCAAG+TGG - chr5_4:23092495-23092514 None:intergenic 50.0%
AACCAGAGCAAAGCTCCGTA+TGG + chr5_4:23092514-23092533 Msa0844570:intron 50.0%
ATCCATACGGAGCTTTGCTC+TGG - chr5_4:23092519-23092538 None:intergenic 50.0%
CTCTGGGTACCAATTTCGGT+GGG - chr5_4:23092545-23092564 None:intergenic 50.0%
!! TAGCCTGGGGATGTTGGTTT+GGG - chr5_4:23092610-23092629 None:intergenic 50.0%
! TTAGCCTGGGGATGTTGGTT+TGG - chr5_4:23092611-23092630 None:intergenic 50.0%
!! GAACCATTTGGGTTAGCCTG+GGG - chr5_4:23092623-23092642 None:intergenic 50.0%
!! GGAACCATTTGGGTTAGCCT+GGG - chr5_4:23092624-23092643 None:intergenic 50.0%
GGCAACCCATGTAGAAACAC+AGG - chr5_4:23093930-23093949 None:intergenic 50.0%
CAGGTTCTACCGCAAAACGA+AGG + chr5_4:23094110-23094129 Msa0844570:intron 50.0%
GGATGGTCACAACATGCTGT+AGG + chr5_4:23094239-23094258 Msa0844570:intron 50.0%
! ATGCTATGGCTCTGCTTCTG+CGG + chr5_4:23094756-23094775 Msa0844570:CDS 50.0%
GTCGTTGGATCGAGATCAGA+TGG + chr5_4:23095875-23095894 Msa0844570:intron 50.0%
GTTGGATCGAGATCAGATGG+TGG + chr5_4:23095878-23095897 Msa0844570:intron 50.0%
GAGACGGCACAGCTTTCTTA+TGG + chr5_4:23096291-23096310 Msa0844570:CDS 50.0%
CGCAATGATCCTCAACAGCA+AGG - chr5_4:23096455-23096474 None:intergenic 50.0%
TTTGCAATTGCAGCAGCGTC+TGG - chr5_4:23096609-23096628 None:intergenic 50.0%
ATGAAAAAGGGAGGGGAGGT+AGG - chr5_4:23096880-23096899 None:intergenic 50.0%
CACATGGACCGACTAATCCG+AGG + chr5_4:23092453-23092472 Msa0844570:intron 55.0%
CATGGACCGACTAATCCGAG+GGG + chr5_4:23092455-23092474 Msa0844570:intron 55.0%
ATCCGAGGGGTTCAATCCCA+CGG + chr5_4:23092468-23092487 Msa0844570:intron 55.0%
TCAATCCCACGGTCCACTTG+CGG + chr5_4:23092479-23092498 Msa0844570:intron 55.0%
CCTCTGGGTACCAATTTCGG+TGG - chr5_4:23092546-23092565 None:intergenic 55.0%
CCACCGAAATTGGTACCCAG+AGG + chr5_4:23092543-23092562 Msa0844570:intron 55.0%
!! GGGATGTTGGTTTGGGACCT+TGG - chr5_4:23092603-23092622 None:intergenic 55.0%
!! TTGGGTTAGCCTGGGGATGT+TGG - chr5_4:23092616-23092635 None:intergenic 55.0%
CATCCCCAGGCTAACCCAAA+TGG + chr5_4:23092617-23092636 Msa0844570:intron 55.0%
!! GGGAACCATTTGGGTTAGCC+TGG - chr5_4:23092625-23092644 None:intergenic 55.0%
GCTAACCCAAATGGTTCCCG+TGG + chr5_4:23092626-23092645 Msa0844570:intron 55.0%
TGGACGGATGAGAGAAGCTG+AGG + chr5_4:23094178-23094197 Msa0844570:CDS 55.0%
GCTGAGGAAGCTGCCAAAAG+AGG + chr5_4:23094194-23094213 Msa0844570:CDS 55.0%
AACTGATGCCGCAGTTCCTG+AGG + chr5_4:23094635-23094654 Msa0844570:CDS 55.0%
ATCGTGCACCTCAGGAACTG+CGG - chr5_4:23094646-23094665 None:intergenic 55.0%
GTTGTGCGTGCGTGATGAGT+TGG + chr5_4:23094778-23094797 Msa0844570:CDS 55.0%
! GTGTGGGCTTTGGCAAAGAC+CGG + chr5_4:23094993-23095012 Msa0844570:CDS 55.0%
TCTCACACTCAGGCCCTGTT+TGG - chr5_4:23095569-23095588 None:intergenic 55.0%
AACAGCGGAGACGCGATGAA+GGG + chr5_4:23096160-23096179 Msa0844570:CDS 55.0%
GACCGTGGGATTGAACCCCT+CGG - chr5_4:23092473-23092492 None:intergenic 60.0%
CAATCCCACGGTCCACTTGC+GGG + chr5_4:23092480-23092499 Msa0844570:intron 60.0%
GGTCCCAAACCAACATCCCC+AGG + chr5_4:23092604-23092623 Msa0844570:intron 60.0%
TCCAACGCAAAGCGTGCTCG+AGG + chr5_4:23094578-23094597 Msa0844570:CDS 60.0%
ACCTCGAGCACGCTTTGCGT+TGG - chr5_4:23094582-23094601 None:intergenic 60.0%
GAACAGCGGAGACGCGATGA+AGG + chr5_4:23096159-23096178 Msa0844570:CDS 60.0%
TCCCACGGTCCACTTGCGGG+AGG + chr5_4:23092483-23092502 Msa0844570:intron 70.0%
GCCTCCCGCAAGTGGACCGT+GGG - chr5_4:23092487-23092506 None:intergenic 70.0%
GGCCTCCCGCAAGTGGACCG+TGG - chr5_4:23092488-23092507 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 23091755 23097133 23091755 ID=Msa0844570;Name=Msa0844570
chr5_4 mRNA 23091755 23097133 23091755 ID=Msa0844570-mRNA-1;Parent=Msa0844570;Name=Msa0844570-mRNA-1;_AED=0.21;_eAED=0.21;_QI=146|1|1|1|1|1|14|465|469
chr5_4 exon 23091755 23091993 23091755 ID=Msa0844570-mRNA-1:exon:9433;Parent=Msa0844570-mRNA-1
chr5_4 exon 23092107 23092259 23092107 ID=Msa0844570-mRNA-1:exon:9434;Parent=Msa0844570-mRNA-1
chr5_4 exon 23093178 23093276 23093178 ID=Msa0844570-mRNA-1:exon:9435;Parent=Msa0844570-mRNA-1
chr5_4 exon 23093877 23093978 23093877 ID=Msa0844570-mRNA-1:exon:9436;Parent=Msa0844570-mRNA-1
chr5_4 exon 23094113 23094256 23094113 ID=Msa0844570-mRNA-1:exon:9437;Parent=Msa0844570-mRNA-1
chr5_4 exon 23094357 23094451 23094357 ID=Msa0844570-mRNA-1:exon:9438;Parent=Msa0844570-mRNA-1
chr5_4 exon 23094527 23094656 23094527 ID=Msa0844570-mRNA-1:exon:9439;Parent=Msa0844570-mRNA-1
chr5_4 exon 23094746 23094850 23094746 ID=Msa0844570-mRNA-1:exon:9440;Parent=Msa0844570-mRNA-1
chr5_4 exon 23094954 23095060 23094954 ID=Msa0844570-mRNA-1:exon:9441;Parent=Msa0844570-mRNA-1
chr5_4 exon 23095139 23095190 23095139 ID=Msa0844570-mRNA-1:exon:9442;Parent=Msa0844570-mRNA-1
chr5_4 exon 23095717 23095806 23095717 ID=Msa0844570-mRNA-1:exon:9443;Parent=Msa0844570-mRNA-1
chr5_4 exon 23096097 23096181 23096097 ID=Msa0844570-mRNA-1:exon:9444;Parent=Msa0844570-mRNA-1
chr5_4 exon 23096258 23096322 23096258 ID=Msa0844570-mRNA-1:exon:9445;Parent=Msa0844570-mRNA-1
chr5_4 exon 23096579 23097133 23096579 ID=Msa0844570-mRNA-1:exon:9446;Parent=Msa0844570-mRNA-1
chr5_4 five_prime_UTR 23091755 23091900 23091755 ID=Msa0844570-mRNA-1:five_prime_utr;Parent=Msa0844570-mRNA-1
chr5_4 CDS 23091901 23091993 23091901 ID=Msa0844570-mRNA-1:cds;Parent=Msa0844570-mRNA-1
chr5_4 CDS 23092107 23092259 23092107 ID=Msa0844570-mRNA-1:cds;Parent=Msa0844570-mRNA-1
chr5_4 CDS 23093178 23093276 23093178 ID=Msa0844570-mRNA-1:cds;Parent=Msa0844570-mRNA-1
chr5_4 CDS 23093877 23093978 23093877 ID=Msa0844570-mRNA-1:cds;Parent=Msa0844570-mRNA-1
chr5_4 CDS 23094113 23094256 23094113 ID=Msa0844570-mRNA-1:cds;Parent=Msa0844570-mRNA-1
chr5_4 CDS 23094357 23094451 23094357 ID=Msa0844570-mRNA-1:cds;Parent=Msa0844570-mRNA-1
chr5_4 CDS 23094527 23094656 23094527 ID=Msa0844570-mRNA-1:cds;Parent=Msa0844570-mRNA-1
chr5_4 CDS 23094746 23094850 23094746 ID=Msa0844570-mRNA-1:cds;Parent=Msa0844570-mRNA-1
chr5_4 CDS 23094954 23095060 23094954 ID=Msa0844570-mRNA-1:cds;Parent=Msa0844570-mRNA-1
chr5_4 CDS 23095139 23095190 23095139 ID=Msa0844570-mRNA-1:cds;Parent=Msa0844570-mRNA-1
chr5_4 CDS 23095717 23095806 23095717 ID=Msa0844570-mRNA-1:cds;Parent=Msa0844570-mRNA-1
chr5_4 CDS 23096097 23096181 23096097 ID=Msa0844570-mRNA-1:cds;Parent=Msa0844570-mRNA-1
chr5_4 CDS 23096258 23096322 23096258 ID=Msa0844570-mRNA-1:cds;Parent=Msa0844570-mRNA-1
chr5_4 CDS 23096579 23096668 23096579 ID=Msa0844570-mRNA-1:cds;Parent=Msa0844570-mRNA-1
chr5_4 three_prime_UTR 23096669 23097133 23096669 ID=Msa0844570-mRNA-1:three_prime_utr;Parent=Msa0844570-mRNA-1
Gene Sequence

>Msa0844570

ATGGAAGGAAGGATCAAATTAAACGACTGTGGATACGAGGTTACAACTTCATCTCAACTCTGCATTTCAGTCATCAACTCCTATTACCAACAGGTTCTTAGTTATGGTAGAGAGAGATGTGTGATTATGGAAGCAGTGGTTCATGATAAGTACTGTGTGTTAGCTAACACCTTAGCAGCTCATTTTATTAACTCTTCTGATTCTTCAAGAGCTGCCTCTTTGCTTAATGCTGCTAAGTCCCACCTTGAACATGCAACCTTGTACGAGAAACTAGTTTTCGATGCCATCAGTTATTTGATGTCGGAAGACAGAGACGATGATGTAGCTGTTGAGTTTCATTACAAGCTTCTAAAGCAGTTCCCAAGAGATTTGGCTTCTCTAAAGAGAGCACAAATCCTGTGTTTCTACATGGGTTGCCCTGATCTTTCTCTATCCCTTGTTAATCAGGTTCTACCGCAAAACGAAGGAGAAAATTACATATATGGCATGCTTGCTTTTCCGTTATTGGAGCTTGGACGGATGAGAGAAGCTGAGGAAGCTGCCAAAAGAGGATTTGAAATCAACAACCAAGATGGATGGTCACAACATGCTTTATGCCATGTTCTTCAGTATGAGTGCCGTTTTAGAGAAGCTGTTAAGTTCATGAAAGAATGTTCTTCGTCGTGGAGTTCTTCTTCATCTTTTATGTTGACACACAATTGGTGGCATGTAGCACTTTGTTACTTAGAGGGAAGTGCTCCAACGCAAAGCGTGCTCGAGGTATATGACAATTATATATGGAAGGAGCTAGACAAAACTGATGCCGCAGTTCCTGAGGTTTACTTAAATGCTATGGCTCTGCTTCTGCGGTTGTGCGTGCGTGATGAGTTGGAGTTTTTTGGTGATCGTCTCAAGATGCTCGCAGATCGCCTAGCCGATCAAGCAAACTGGTATTTAGAGTGGCACCTTGATGTATTGACAGTGTGGGCTTTGGCAAAGACCGGACAAATTTCTAAAGCAGAAGATCTTCTTACAGGCTTAAAAGAAAGGATTTCGAGGATGACTAAAAAGAAACAACAAATAATGCAAAAAGGAATGCTGCTTGCAGAAGCACTTTATGCATATGGAAGAGGTAACGACAAACATGGACTGGAGTTACTTGGTCCAAATTTTGATGGCAATGATTGCAAGGTAATTGGTGCATCTGATGAACAAGTTGATGTATTCAACGAAGTTTGGTACATCATGTTGCTGAACAGCGGAGACGCGATGAAGGCAATTGAAGTGATTGAGAAGCGAATCAAGAAGAGAGACGGCACAGCTTTCTTATGGCGTTTGCTGGAGAGAGGATACAAACTAGCAAATAGACCAGACGCTGCTGCAATTGCAAATGAAAAAGCTAAGGTTTTCGAGAGTGCTTATTTCAATTAA

Protein sequence

>Msa0844570

MEGRIKLNDCGYEVTTSSQLCISVINSYYQQVLSYGRERCVIMEAVVHDKYCVLANTLAAHFINSSDSSRAASLLNAAKSHLEHATLYEKLVFDAISYLMSEDRDDDVAVEFHYKLLKQFPRDLASLKRAQILCFYMGCPDLSLSLVNQVLPQNEGENYIYGMLAFPLLELGRMREAEEAAKRGFEINNQDGWSQHALCHVLQYECRFREAVKFMKECSSSWSSSSSFMLTHNWWHVALCYLEGSAPTQSVLEVYDNYIWKELDKTDAAVPEVYLNAMALLLRLCVRDELEFFGDRLKMLADRLADQANWYLEWHLDVLTVWALAKTGQISKAEDLLTGLKERISRMTKKKQQIMQKGMLLAEALYAYGRGNDKHGLELLGPNFDGNDCKVIGASDEQVDVFNEVWYIMLLNSGDAMKAIEVIEKRIKKRDGTAFLWRLLERGYKLANRPDAAAIANEKAKVFESAYFN*