Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655630 | XP_039684413.1 | 74.820 | 278 | 16 | 3 | 1 | 224 | 1 | 278 | 4.38e-138 | 398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655630 | sp|Q6NLW5|XRI1_ARATH | 40.566 | 106 | 53 | 3 | 123 | 224 | 201 | 300 | 1.67e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655630 | A0A396GQ56 | 74.820 | 278 | 16 | 3 | 1 | 224 | 1 | 278 | 2.09e-138 | 398 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0604420 | Msa0655630 | 0.852828 | 3.573974e-61 | -8.615850e-47 |
| Msa0655630 | Msa0699490 | 0.909001 | 9.225184e-82 | -8.615850e-47 |
| Msa0562290 | Msa0655630 | 0.954864 | 1.127960e-112 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655630 | MtrunA17_Chr8g0375391 | 74.820 | 278 | 16 | 3 | 1 | 224 | 1 | 278 | 4.03e-142 | 398 |
| Msa0655630 | MtrunA17_Chr3g0109931 | 36.979 | 192 | 92 | 6 | 50 | 224 | 21 | 200 | 4.92e-30 | 110 |
| Msa0655630 | MtrunA17_Chr7g0236031 | 30.973 | 226 | 125 | 8 | 5 | 224 | 106 | 306 | 8.17e-17 | 77.4 |
| Msa0655630 | MtrunA17_Chr8g0340041 | 38.384 | 99 | 51 | 2 | 129 | 224 | 209 | 300 | 1.54e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655630 | AT2G01990.2 | 47.541 | 244 | 78 | 8 | 21 | 224 | 11 | 244 | 3.37e-59 | 187 |
| Msa0655630 | AT1G14630.1 | 49.569 | 232 | 88 | 7 | 13 | 224 | 4 | 226 | 2.56e-58 | 184 |
| Msa0655630 | AT2G01990.1 | 50.725 | 207 | 60 | 6 | 50 | 224 | 17 | 213 | 3.24e-56 | 178 |
| Msa0655630 | AT5G48720.2 | 40.566 | 106 | 53 | 3 | 123 | 224 | 201 | 300 | 1.69e-15 | 74.3 |
| Msa0655630 | AT5G48720.4 | 40.566 | 106 | 53 | 3 | 123 | 224 | 201 | 300 | 1.69e-15 | 74.3 |
| Msa0655630 | AT5G48720.1 | 45.679 | 81 | 38 | 2 | 144 | 224 | 192 | 266 | 2.10e-15 | 73.6 |
| Msa0655630 | AT5G48720.3 | 45.679 | 81 | 38 | 2 | 144 | 224 | 192 | 266 | 2.10e-15 | 73.6 |
Find 66 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACAAGGTCCAGGCCTTTC+AGG | 0.243748 | 4_3:+64343134 | Msa0655630:CDS |
| TCACCAACTGGATGCCTTAC+TGG | 0.271694 | 4_3:-64343086 | None:intergenic |
| CCACTGGTTGGTGCCATATA+GGG | 0.272649 | 4_3:-64342152 | None:intergenic |
| TCTGGAATTTCAACCCTATA+TGG | 0.295231 | 4_3:+64342139 | Msa0655630:CDS |
| TTGAATGAGTTTAGTATAGT+TGG | 0.332190 | 4_3:-64341533 | None:intergenic |
| CTATGGTTCTTCCCTAGGTT+GGG | 0.351214 | 4_3:+64341688 | Msa0655630:CDS |
| ATATAAAAGTGAATGTTTCT+TGG | 0.352532 | 4_3:-64341479 | None:intergenic |
| TCCACTGGTTGGTGCCATAT+AGG | 0.356387 | 4_3:-64342153 | None:intergenic |
| CTTGAGTGTGGATTCTAGTA+AGG | 0.359570 | 4_3:-64343172 | None:intergenic |
| TATAAAAGTGAATGTTTCTT+GGG | 0.359705 | 4_3:-64341478 | None:intergenic |
| GGATGCCTTACTGGCCTTGT+TGG | 0.361970 | 4_3:-64343077 | None:intergenic |
| GGTGATGAGAAAGAAGAAAA+AGG | 0.363465 | 4_3:+64342944 | Msa0655630:CDS |
| ACATGAAAACAAAGCAAATC+AGG | 0.370570 | 4_3:-64343325 | None:intergenic |
| GGTTGGGATTATCACAATCT+TGG | 0.380286 | 4_3:+64341704 | Msa0655630:CDS |
| CAAGAGTCTGATTTCTCAAC+TGG | 0.388114 | 4_3:+64341905 | Msa0655630:CDS |
| GTCTATTTATGTACAAGTTA+TGG | 0.405893 | 4_3:-64341583 | None:intergenic |
| GCTATGGTTCTTCCCTAGGT+TGG | 0.416564 | 4_3:+64341687 | Msa0655630:CDS |
| CCACCACTGCTTTGCCTGAA+AGG | 0.422228 | 4_3:-64343148 | None:intergenic |
| TTCGATCTTTACAATTTAGC+AGG | 0.422270 | 4_3:-64343348 | None:intergenic |
| ACATCACCTTCTTCTCCTCC+TGG | 0.426500 | 4_3:-64343017 | None:intergenic |
| GTACTGTGAATGTTAGCCTT+TGG | 0.428209 | 4_3:-64343225 | None:intergenic |
| TGGTTATCTTGAAGATGCTT+TGG | 0.432715 | 4_3:+64341925 | Msa0655630:CDS |
| TCAATGCAGGCCAAAGGGTT+AGG | 0.439774 | 4_3:-64341504 | None:intergenic |
| TGCCTTACTGGCCTTGTTGG+AGG | 0.444848 | 4_3:-64343074 | None:intergenic |
| CTCAGCTATGGTTCTTCCCT+AGG | 0.445329 | 4_3:+64341683 | Msa0655630:CDS |
| CCTGGCTTCACTAATGCAAA+TGG | 0.448137 | 4_3:-64342999 | None:intergenic |
| TACCTTATCAAAATCATCAA+TGG | 0.460583 | 4_3:-64342017 | None:intergenic |
| GAAGATGCTTTGGTTGAGTT+CGG | 0.464739 | 4_3:+64341935 | Msa0655630:CDS |
| TGCCTCCAACAAGGCCAGTA+AGG | 0.471163 | 4_3:+64343072 | Msa0655630:CDS |
| ACTGCTTTGCCTGAAAGGCC+TGG | 0.473365 | 4_3:-64343143 | None:intergenic |
| TGCGTATCTGCACAAGGTCC+AGG | 0.484327 | 4_3:+64343125 | Msa0655630:CDS |
| GATCAGATAGAAAGGATTTG+TGG | 0.485973 | 4_3:+64342192 | Msa0655630:CDS |
| GTGAAGCCAGGAGGAGAAGA+AGG | 0.488620 | 4_3:+64343011 | Msa0655630:CDS |
| TGAGGCTATTAGTATAAGCT+AGG | 0.491943 | 4_3:-64341664 | None:intergenic |
| GTCAGTCAATGCAGGCCAAA+GGG | 0.501215 | 4_3:-64341509 | None:intergenic |
| CGACATGCAAAGTCACCAAC+TGG | 0.501594 | 4_3:-64343098 | None:intergenic |
| TGCCTCTTCTTCCTTGAGTG+TGG | 0.502866 | 4_3:-64343184 | None:intergenic |
| CCATTTGCATTAGTGAAGCC+AGG | 0.517544 | 4_3:+64342999 | Msa0655630:CDS |
| ACTGCATGGATCAGATAGAA+AGG | 0.538926 | 4_3:+64342184 | Msa0655630:CDS |
| GATTGTGATAATCCCAACCT+AGG | 0.542350 | 4_3:-64341700 | None:intergenic |
| CCTTTCAGGCAAAGCAGTGG+TGG | 0.557492 | 4_3:+64343148 | Msa0655630:CDS |
| TTGAGTGTGGATTCTAGTAA+GGG | 0.559111 | 4_3:-64343171 | None:intergenic |
| TAGTTGGAGTCAGTCAATGC+AGG | 0.570897 | 4_3:-64341517 | None:intergenic |
| AGTGGAGAATTTCTACTGCA+TGG | 0.572678 | 4_3:+64342170 | Msa0655630:CDS |
| CCCTATATGGCACCAACCAG+TGG | 0.576336 | 4_3:+64342152 | Msa0655630:CDS |
| AGTCAGTCAATGCAGGCCAA+AGG | 0.577387 | 4_3:-64341510 | None:intergenic |
| ATCACTATTATCAGAACCAA+AGG | 0.578340 | 4_3:+64343209 | Msa0655630:CDS |
| ATCCACACTCAAGGAAGAAG+AGG | 0.597837 | 4_3:+64343182 | Msa0655630:CDS |
| CATTGAATGACATAAATGAA+AGG | 0.598530 | 4_3:+64343042 | Msa0655630:CDS |
| ATGCAGTAGAAATTCTCCAC+TGG | 0.600169 | 4_3:-64342168 | None:intergenic |
| GGACCTTGTGCAGATACGCA+TGG | 0.608397 | 4_3:-64343122 | None:intergenic |
| CAGTTGGTGACTTTGCATGT+CGG | 0.613753 | 4_3:+64343099 | Msa0655630:CDS |
| TTTGGTTCTGATAATAGTGA+TGG | 0.613771 | 4_3:-64343207 | None:intergenic |
| CGGCCATGCGTATCTGCACA+AGG | 0.617785 | 4_3:+64343119 | Msa0655630:CDS |
| ATTGTGATAATCCCAACCTA+GGG | 0.619431 | 4_3:-64341699 | None:intergenic |
| TATACTAATAGCCTCAGCTA+TGG | 0.624938 | 4_3:+64341671 | Msa0655630:CDS |
| AGTAGAAATTCTCCACTGGT+TGG | 0.629919 | 4_3:-64342164 | None:intergenic |
| GGATCTTAATGCCTCCAACA+AGG | 0.630736 | 4_3:+64343063 | Msa0655630:CDS |
| GAGGCTATTAGTATAAGCTA+GGG | 0.637394 | 4_3:-64341663 | None:intergenic |
| TAGTACTACTACTAGTGATG+AGG | 0.645618 | 4_3:+64342923 | Msa0655630:CDS |
| CTTACTAGAATCCACACTCA+AGG | 0.649499 | 4_3:+64343173 | Msa0655630:CDS |
| AAGGACAACAACAACAAGAG+TGG | 0.654506 | 4_3:+64342971 | Msa0655630:CDS |
| AGGCCTTTCAGGCAAAGCAG+TGG | 0.658996 | 4_3:+64343145 | Msa0655630:CDS |
| AGGCCAGTAAGGCATCCAGT+TGG | 0.681142 | 4_3:+64343083 | Msa0655630:CDS |
| CTAGGGAAGAACCATAGCTG+AGG | 0.694216 | 4_3:-64341682 | None:intergenic |
| TTTGCATTAGTGAAGCCAGG+AGG | 0.731178 | 4_3:+64343002 | Msa0655630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATTGTAGTAAAATA+CGG | + | chr4_3:64342761-64342780 | Msa0655630:intron | 10.0% |
| !! | AAAACTATAAATATATCATA+TGG | + | chr4_3:64342869-64342888 | Msa0655630:intron | 10.0% |
| !!! | TTTTATATTGTAGTAAAATA+CGG | + | chr4_3:64342761-64342780 | Msa0655630:intron | 10.0% |
| !! | AAAACTATAAATATATCATA+TGG | + | chr4_3:64342869-64342888 | Msa0655630:intron | 10.0% |
| !! | TGATATTGAATTATATGATA+TGG | + | chr4_3:64341847-64341866 | Msa0655630:intron | 15.0% |
| !! | AATTTCAAACTTAAAATGAA+AGG | - | chr4_3:64342069-64342088 | None:intergenic | 15.0% |
| !! | AAATCAAAAGAAAAGAATAA+AGG | + | chr4_3:64342376-64342395 | Msa0655630:intron | 15.0% |
| !! | TTTATATACTCTATTACATA+TGG | + | chr4_3:64342700-64342719 | Msa0655630:intron | 15.0% |
| !! | TGATATTGAATTATATGATA+TGG | + | chr4_3:64341847-64341866 | Msa0655630:intron | 15.0% |
| !! | AATTTCAAACTTAAAATGAA+AGG | - | chr4_3:64342069-64342088 | None:intergenic | 15.0% |
| !! | AAATCAAAAGAAAAGAATAA+AGG | + | chr4_3:64342376-64342395 | Msa0655630:intron | 15.0% |
| !! | TTTATATACTCTATTACATA+TGG | + | chr4_3:64342700-64342719 | Msa0655630:intron | 15.0% |
| !! | TATAAAAGTGAATGTTTCTT+GGG | - | chr4_3:64341481-64341500 | None:intergenic | 20.0% |
| !! | ATATAAAAGTGAATGTTTCT+TGG | - | chr4_3:64341482-64341501 | None:intergenic | 20.0% |
| !!! | AAGAAAATAGAAAAAGCATA+TGG | - | chr4_3:64341563-64341582 | None:intergenic | 20.0% |
| !! | ATTATATGATATGGTAGTTA+TGG | + | chr4_3:64341856-64341875 | Msa0655630:intron | 20.0% |
| !! | TATGTAACTATATATAGTTC+TGG | + | chr4_3:64342121-64342140 | Msa0655630:intron | 20.0% |
| !! | AATTGATTGAGAATTGAAAA+AGG | + | chr4_3:64342344-64342363 | Msa0655630:intron | 20.0% |
| !!! | TCTTTTCTTTTGATTTCTTT+GGG | - | chr4_3:64342372-64342391 | None:intergenic | 20.0% |
| !!! | TTCTTTTCTTTTGATTTCTT+TGG | - | chr4_3:64342373-64342392 | None:intergenic | 20.0% |
| !!! | TATATAAAAGTATACCAAGT+GGG | - | chr4_3:64342688-64342707 | None:intergenic | 20.0% |
| !!! | GAAACTATATTTTATACACA+TGG | - | chr4_3:64343418-64343437 | None:intergenic | 20.0% |
| !! | TATAAAAGTGAATGTTTCTT+GGG | - | chr4_3:64341481-64341500 | None:intergenic | 20.0% |
| !! | ATATAAAAGTGAATGTTTCT+TGG | - | chr4_3:64341482-64341501 | None:intergenic | 20.0% |
| !!! | AAGAAAATAGAAAAAGCATA+TGG | - | chr4_3:64341563-64341582 | None:intergenic | 20.0% |
| !! | ATTATATGATATGGTAGTTA+TGG | + | chr4_3:64341856-64341875 | Msa0655630:intron | 20.0% |
| !! | TATGTAACTATATATAGTTC+TGG | + | chr4_3:64342121-64342140 | Msa0655630:intron | 20.0% |
| !! | AATTGATTGAGAATTGAAAA+AGG | + | chr4_3:64342344-64342363 | Msa0655630:intron | 20.0% |
| !!! | TCTTTTCTTTTGATTTCTTT+GGG | - | chr4_3:64342372-64342391 | None:intergenic | 20.0% |
| !!! | TTCTTTTCTTTTGATTTCTT+TGG | - | chr4_3:64342373-64342392 | None:intergenic | 20.0% |
| !!! | TATATAAAAGTATACCAAGT+GGG | - | chr4_3:64342688-64342707 | None:intergenic | 20.0% |
| !!! | GAAACTATATTTTATACACA+TGG | - | chr4_3:64343418-64343437 | None:intergenic | 20.0% |
| !! | TTTTATATATCCTAACCCTT+TGG | + | chr4_3:64341494-64341513 | Msa0655630:five_prime_UTR | 25.0% |
| ! | TTGAATGAGTTTAGTATAGT+TGG | - | chr4_3:64341536-64341555 | None:intergenic | 25.0% |
| ! | GTCTATTTATGTACAAGTTA+TGG | - | chr4_3:64341586-64341605 | None:intergenic | 25.0% |
| !!! | TTCCATTGATGATTTTGATA+AGG | + | chr4_3:64342015-64342034 | Msa0655630:CDS | 25.0% |
| ! | TACCTTATCAAAATCATCAA+TGG | - | chr4_3:64342020-64342039 | None:intergenic | 25.0% |
| !!! | TTTGAAATTCTTGTTGTTCT+TGG | + | chr4_3:64342080-64342099 | Msa0655630:intron | 25.0% |
| ! | TAATTCTTTGTATGAAGATG+AGG | - | chr4_3:64342630-64342649 | None:intergenic | 25.0% |
| !! | ATATAAAAGTATACCAAGTG+GGG | - | chr4_3:64342687-64342706 | None:intergenic | 25.0% |
| !! | GTATATAAAAGTATACCAAG+TGG | - | chr4_3:64342689-64342708 | None:intergenic | 25.0% |
| ! | CATTGAATGACATAAATGAA+AGG | + | chr4_3:64343042-64343061 | Msa0655630:CDS | 25.0% |
| !!! | TTTTGTTATCATGCATGTTA+TGG | + | chr4_3:64343260-64343279 | Msa0655630:three_prime_UTR | 25.0% |
| !! | TTTTATATATCCTAACCCTT+TGG | + | chr4_3:64341494-64341513 | Msa0655630:five_prime_UTR | 25.0% |
| ! | TTGAATGAGTTTAGTATAGT+TGG | - | chr4_3:64341536-64341555 | None:intergenic | 25.0% |
| ! | GTCTATTTATGTACAAGTTA+TGG | - | chr4_3:64341586-64341605 | None:intergenic | 25.0% |
| !!! | TTCCATTGATGATTTTGATA+AGG | + | chr4_3:64342015-64342034 | Msa0655630:CDS | 25.0% |
| ! | TACCTTATCAAAATCATCAA+TGG | - | chr4_3:64342020-64342039 | None:intergenic | 25.0% |
| !!! | TTTGAAATTCTTGTTGTTCT+TGG | + | chr4_3:64342080-64342099 | Msa0655630:intron | 25.0% |
| ! | TAATTCTTTGTATGAAGATG+AGG | - | chr4_3:64342630-64342649 | None:intergenic | 25.0% |
| !! | ATATAAAAGTATACCAAGTG+GGG | - | chr4_3:64342687-64342706 | None:intergenic | 25.0% |
| !! | GTATATAAAAGTATACCAAG+TGG | - | chr4_3:64342689-64342708 | None:intergenic | 25.0% |
| ! | CATTGAATGACATAAATGAA+AGG | + | chr4_3:64343042-64343061 | Msa0655630:CDS | 25.0% |
| !!! | TTTTGTTATCATGCATGTTA+TGG | + | chr4_3:64343260-64343279 | Msa0655630:three_prime_UTR | 25.0% |
| ! | ATATGACGTGATGATCATTT+TGG | + | chr4_3:64342265-64342284 | Msa0655630:intron | 30.0% |
| !!! | GATGATCATTTTGGTTCAAA+AGG | + | chr4_3:64342274-64342293 | Msa0655630:intron | 30.0% |
| ATGAACATATAAGCACATTG+AGG | + | chr4_3:64342516-64342535 | Msa0655630:intron | 30.0% | |
| !!! | CTGGTTTTGGATATTGTTAA+TGG | - | chr4_3:64342656-64342675 | None:intergenic | 30.0% |
| !! | TTTGGTTCTGATAATAGTGA+TGG | - | chr4_3:64343210-64343229 | None:intergenic | 30.0% |
| ATCACTATTATCAGAACCAA+AGG | + | chr4_3:64343209-64343228 | Msa0655630:CDS | 30.0% | |
| ACATGAAAACAAAGCAAATC+AGG | - | chr4_3:64343328-64343347 | None:intergenic | 30.0% | |
| TTCGATCTTTACAATTTAGC+AGG | - | chr4_3:64343351-64343370 | None:intergenic | 30.0% | |
| ! | ATATGACGTGATGATCATTT+TGG | + | chr4_3:64342265-64342284 | Msa0655630:intron | 30.0% |
| !!! | GATGATCATTTTGGTTCAAA+AGG | + | chr4_3:64342274-64342293 | Msa0655630:intron | 30.0% |
| ATGAACATATAAGCACATTG+AGG | + | chr4_3:64342516-64342535 | Msa0655630:intron | 30.0% | |
| !!! | CTGGTTTTGGATATTGTTAA+TGG | - | chr4_3:64342656-64342675 | None:intergenic | 30.0% |
| !! | TTTGGTTCTGATAATAGTGA+TGG | - | chr4_3:64343210-64343229 | None:intergenic | 30.0% |
| ATCACTATTATCAGAACCAA+AGG | + | chr4_3:64343209-64343228 | Msa0655630:CDS | 30.0% | |
| ACATGAAAACAAAGCAAATC+AGG | - | chr4_3:64343328-64343347 | None:intergenic | 30.0% | |
| TTCGATCTTTACAATTTAGC+AGG | - | chr4_3:64343351-64343370 | None:intergenic | 30.0% | |
| TGACAAAAAATGATGAGGAG+GGG | - | chr4_3:64341608-64341627 | None:intergenic | 35.0% | |
| GTGACAAAAAATGATGAGGA+GGG | - | chr4_3:64341609-64341628 | None:intergenic | 35.0% | |
| TGTGACAAAAAATGATGAGG+AGG | - | chr4_3:64341610-64341629 | None:intergenic | 35.0% | |
| GTGTGTGACAAAAAATGATG+AGG | - | chr4_3:64341613-64341632 | None:intergenic | 35.0% | |
| GAGGCTATTAGTATAAGCTA+GGG | - | chr4_3:64341666-64341685 | None:intergenic | 35.0% | |
| TGAGGCTATTAGTATAAGCT+AGG | - | chr4_3:64341667-64341686 | None:intergenic | 35.0% | |
| TATACTAATAGCCTCAGCTA+TGG | + | chr4_3:64341671-64341690 | Msa0655630:CDS | 35.0% | |
| ATTGTGATAATCCCAACCTA+GGG | - | chr4_3:64341702-64341721 | None:intergenic | 35.0% | |
| TGGTTATCTTGAAGATGCTT+TGG | + | chr4_3:64341925-64341944 | Msa0655630:CDS | 35.0% | |
| ! | TCTGGAATTTCAACCCTATA+TGG | + | chr4_3:64342139-64342158 | Msa0655630:CDS | 35.0% |
| GATCAGATAGAAAGGATTTG+TGG | + | chr4_3:64342192-64342211 | Msa0655630:CDS | 35.0% | |
| ! | GAAAGGATTTGTGGATTTTC+AGG | + | chr4_3:64342201-64342220 | Msa0655630:CDS | 35.0% |
| ! | GTGTCTTCTAGAAGAATGTT+TGG | - | chr4_3:64342560-64342579 | None:intergenic | 35.0% |
| TATGAAGATGAGGAGGAATT+TGG | - | chr4_3:64342620-64342639 | None:intergenic | 35.0% | |
| TTCTTTGTATGAAGATGAGG+AGG | - | chr4_3:64342627-64342646 | None:intergenic | 35.0% | |
| TAAAATACGGACCACAATTG+CGG | + | chr4_3:64342774-64342793 | Msa0655630:intron | 35.0% | |
| TAGTACTACTACTAGTGATG+AGG | + | chr4_3:64342923-64342942 | Msa0655630:CDS | 35.0% | |
| GGTGATGAGAAAGAAGAAAA+AGG | + | chr4_3:64342944-64342963 | Msa0655630:CDS | 35.0% | |
| GATGAGAAAGAAGAAAAAGG+TGG | + | chr4_3:64342947-64342966 | Msa0655630:CDS | 35.0% | |
| GAAAGAAGAAAAAGGTGGTA+AGG | + | chr4_3:64342952-64342971 | Msa0655630:CDS | 35.0% | |
| TTGAGTGTGGATTCTAGTAA+GGG | - | chr4_3:64343174-64343193 | None:intergenic | 35.0% | |
| TGACAAAAAATGATGAGGAG+GGG | - | chr4_3:64341608-64341627 | None:intergenic | 35.0% | |
| GTGACAAAAAATGATGAGGA+GGG | - | chr4_3:64341609-64341628 | None:intergenic | 35.0% | |
| TGTGACAAAAAATGATGAGG+AGG | - | chr4_3:64341610-64341629 | None:intergenic | 35.0% | |
| GTGTGTGACAAAAAATGATG+AGG | - | chr4_3:64341613-64341632 | None:intergenic | 35.0% | |
| GAGGCTATTAGTATAAGCTA+GGG | - | chr4_3:64341666-64341685 | None:intergenic | 35.0% | |
| TGAGGCTATTAGTATAAGCT+AGG | - | chr4_3:64341667-64341686 | None:intergenic | 35.0% | |
| TATACTAATAGCCTCAGCTA+TGG | + | chr4_3:64341671-64341690 | Msa0655630:CDS | 35.0% | |
| ATTGTGATAATCCCAACCTA+GGG | - | chr4_3:64341702-64341721 | None:intergenic | 35.0% | |
| TGGTTATCTTGAAGATGCTT+TGG | + | chr4_3:64341925-64341944 | Msa0655630:CDS | 35.0% | |
| ! | TCTGGAATTTCAACCCTATA+TGG | + | chr4_3:64342139-64342158 | Msa0655630:CDS | 35.0% |
| GATCAGATAGAAAGGATTTG+TGG | + | chr4_3:64342192-64342211 | Msa0655630:CDS | 35.0% | |
| ! | GAAAGGATTTGTGGATTTTC+AGG | + | chr4_3:64342201-64342220 | Msa0655630:CDS | 35.0% |
| ! | GTGTCTTCTAGAAGAATGTT+TGG | - | chr4_3:64342560-64342579 | None:intergenic | 35.0% |
| TATGAAGATGAGGAGGAATT+TGG | - | chr4_3:64342620-64342639 | None:intergenic | 35.0% | |
| TTCTTTGTATGAAGATGAGG+AGG | - | chr4_3:64342627-64342646 | None:intergenic | 35.0% | |
| TAAAATACGGACCACAATTG+CGG | + | chr4_3:64342774-64342793 | Msa0655630:intron | 35.0% | |
| TAGTACTACTACTAGTGATG+AGG | + | chr4_3:64342923-64342942 | Msa0655630:CDS | 35.0% | |
| GGTGATGAGAAAGAAGAAAA+AGG | + | chr4_3:64342944-64342963 | Msa0655630:CDS | 35.0% | |
| GATGAGAAAGAAGAAAAAGG+TGG | + | chr4_3:64342947-64342966 | Msa0655630:CDS | 35.0% | |
| GAAAGAAGAAAAAGGTGGTA+AGG | + | chr4_3:64342952-64342971 | Msa0655630:CDS | 35.0% | |
| TTGAGTGTGGATTCTAGTAA+GGG | - | chr4_3:64343174-64343193 | None:intergenic | 35.0% | |
| GATTGTGATAATCCCAACCT+AGG | - | chr4_3:64341703-64341722 | None:intergenic | 40.0% | |
| GGTTGGGATTATCACAATCT+TGG | + | chr4_3:64341704-64341723 | Msa0655630:CDS | 40.0% | |
| CAAGAGTCTGATTTCTCAAC+TGG | + | chr4_3:64341905-64341924 | Msa0655630:CDS | 40.0% | |
| GAAGATGCTTTGGTTGAGTT+CGG | + | chr4_3:64341935-64341954 | Msa0655630:CDS | 40.0% | |
| AGTAGAAATTCTCCACTGGT+TGG | - | chr4_3:64342167-64342186 | None:intergenic | 40.0% | |
| ATGCAGTAGAAATTCTCCAC+TGG | - | chr4_3:64342171-64342190 | None:intergenic | 40.0% | |
| AGTGGAGAATTTCTACTGCA+TGG | + | chr4_3:64342170-64342189 | Msa0655630:CDS | 40.0% | |
| ACTGCATGGATCAGATAGAA+AGG | + | chr4_3:64342184-64342203 | Msa0655630:CDS | 40.0% | |
| GGAATTTGGAGATTCAGATG+CGG | - | chr4_3:64342606-64342625 | None:intergenic | 40.0% | |
| ! | ATGGTTTGCAACTGCAATTG+CGG | - | chr4_3:64342844-64342863 | None:intergenic | 40.0% |
| AAGGACAACAACAACAAGAG+TGG | + | chr4_3:64342971-64342990 | Msa0655630:CDS | 40.0% | |
| CTTGAGTGTGGATTCTAGTA+AGG | - | chr4_3:64343175-64343194 | None:intergenic | 40.0% | |
| CTTACTAGAATCCACACTCA+AGG | + | chr4_3:64343173-64343192 | Msa0655630:CDS | 40.0% | |
| !! | GTACTGTGAATGTTAGCCTT+TGG | - | chr4_3:64343228-64343247 | None:intergenic | 40.0% |
| GCAAATCAGGCTAAAAAAGC+TGG | - | chr4_3:64343315-64343334 | None:intergenic | 40.0% | |
| GATTGTGATAATCCCAACCT+AGG | - | chr4_3:64341703-64341722 | None:intergenic | 40.0% | |
| GGTTGGGATTATCACAATCT+TGG | + | chr4_3:64341704-64341723 | Msa0655630:CDS | 40.0% | |
| CAAGAGTCTGATTTCTCAAC+TGG | + | chr4_3:64341905-64341924 | Msa0655630:CDS | 40.0% | |
| GAAGATGCTTTGGTTGAGTT+CGG | + | chr4_3:64341935-64341954 | Msa0655630:CDS | 40.0% | |
| AGTAGAAATTCTCCACTGGT+TGG | - | chr4_3:64342167-64342186 | None:intergenic | 40.0% | |
| ATGCAGTAGAAATTCTCCAC+TGG | - | chr4_3:64342171-64342190 | None:intergenic | 40.0% | |
| AGTGGAGAATTTCTACTGCA+TGG | + | chr4_3:64342170-64342189 | Msa0655630:CDS | 40.0% | |
| ACTGCATGGATCAGATAGAA+AGG | + | chr4_3:64342184-64342203 | Msa0655630:CDS | 40.0% | |
| GGAATTTGGAGATTCAGATG+CGG | - | chr4_3:64342606-64342625 | None:intergenic | 40.0% | |
| ! | ATGGTTTGCAACTGCAATTG+CGG | - | chr4_3:64342844-64342863 | None:intergenic | 40.0% |
| AAGGACAACAACAACAAGAG+TGG | + | chr4_3:64342971-64342990 | Msa0655630:CDS | 40.0% | |
| CTTGAGTGTGGATTCTAGTA+AGG | - | chr4_3:64343175-64343194 | None:intergenic | 40.0% | |
| CTTACTAGAATCCACACTCA+AGG | + | chr4_3:64343173-64343192 | Msa0655630:CDS | 40.0% | |
| !! | GTACTGTGAATGTTAGCCTT+TGG | - | chr4_3:64343228-64343247 | None:intergenic | 40.0% |
| GCAAATCAGGCTAAAAAAGC+TGG | - | chr4_3:64343315-64343334 | None:intergenic | 40.0% | |
| TAGTTGGAGTCAGTCAATGC+AGG | - | chr4_3:64341520-64341539 | None:intergenic | 45.0% | |
| CTATGGTTCTTCCCTAGGTT+GGG | + | chr4_3:64341688-64341707 | Msa0655630:CDS | 45.0% | |
| TTGCAGTCACAATTACGCTG+CGG | + | chr4_3:64342736-64342755 | Msa0655630:intron | 45.0% | |
| CCTGGCTTCACTAATGCAAA+TGG | - | chr4_3:64343002-64343021 | None:intergenic | 45.0% | |
| CCATTTGCATTAGTGAAGCC+AGG | + | chr4_3:64342999-64343018 | Msa0655630:CDS | 45.0% | |
| TTTGCATTAGTGAAGCCAGG+AGG | + | chr4_3:64343002-64343021 | Msa0655630:CDS | 45.0% | |
| GGATCTTAATGCCTCCAACA+AGG | + | chr4_3:64343063-64343082 | Msa0655630:CDS | 45.0% | |
| !! | CAGTTGGTGACTTTGCATGT+CGG | + | chr4_3:64343099-64343118 | Msa0655630:CDS | 45.0% |
| ATCCACACTCAAGGAAGAAG+AGG | + | chr4_3:64343182-64343201 | Msa0655630:CDS | 45.0% | |
| TAGTTGGAGTCAGTCAATGC+AGG | - | chr4_3:64341520-64341539 | None:intergenic | 45.0% | |
| CTATGGTTCTTCCCTAGGTT+GGG | + | chr4_3:64341688-64341707 | Msa0655630:CDS | 45.0% | |
| TTGCAGTCACAATTACGCTG+CGG | + | chr4_3:64342736-64342755 | Msa0655630:intron | 45.0% | |
| CCTGGCTTCACTAATGCAAA+TGG | - | chr4_3:64343002-64343021 | None:intergenic | 45.0% | |
| CCATTTGCATTAGTGAAGCC+AGG | + | chr4_3:64342999-64343018 | Msa0655630:CDS | 45.0% | |
| TTTGCATTAGTGAAGCCAGG+AGG | + | chr4_3:64343002-64343021 | Msa0655630:CDS | 45.0% | |
| GGATCTTAATGCCTCCAACA+AGG | + | chr4_3:64343063-64343082 | Msa0655630:CDS | 45.0% | |
| !! | CAGTTGGTGACTTTGCATGT+CGG | + | chr4_3:64343099-64343118 | Msa0655630:CDS | 45.0% |
| ATCCACACTCAAGGAAGAAG+AGG | + | chr4_3:64343182-64343201 | Msa0655630:CDS | 45.0% | |
| !!! | TATTATTTTAATTTACTAAT+TGG | + | chr4_3:64342474-64342493 | Msa0655630:intron | 5.0% |
| !!! | ATATTTATAGTTTTAATTTA+TGG | - | chr4_3:64342863-64342882 | None:intergenic | 5.0% |
| !! | TATTATAAATTATTAAAAAC+AGG | + | chr4_3:64342897-64342916 | Msa0655630:intron | 5.0% |
| !!! | TATTATTTTAATTTACTAAT+TGG | + | chr4_3:64342474-64342493 | Msa0655630:intron | 5.0% |
| !!! | ATATTTATAGTTTTAATTTA+TGG | - | chr4_3:64342863-64342882 | None:intergenic | 5.0% |
| !! | TATTATAAATTATTAAAAAC+AGG | + | chr4_3:64342897-64342916 | Msa0655630:intron | 5.0% |
| TCAATGCAGGCCAAAGGGTT+AGG | - | chr4_3:64341507-64341526 | None:intergenic | 50.0% | |
| GTCAGTCAATGCAGGCCAAA+GGG | - | chr4_3:64341512-64341531 | None:intergenic | 50.0% | |
| AGTCAGTCAATGCAGGCCAA+AGG | - | chr4_3:64341513-64341532 | None:intergenic | 50.0% | |
| CTAGGGAAGAACCATAGCTG+AGG | - | chr4_3:64341685-64341704 | None:intergenic | 50.0% | |
| CTCAGCTATGGTTCTTCCCT+AGG | + | chr4_3:64341683-64341702 | Msa0655630:CDS | 50.0% | |
| GCTATGGTTCTTCCCTAGGT+TGG | + | chr4_3:64341687-64341706 | Msa0655630:CDS | 50.0% | |
| !! | CCACTGGTTGGTGCCATATA+GGG | - | chr4_3:64342155-64342174 | None:intergenic | 50.0% |
| !! | TCCACTGGTTGGTGCCATAT+AGG | - | chr4_3:64342156-64342175 | None:intergenic | 50.0% |
| GCACATTGCAACCGCAATTG+TGG | - | chr4_3:64342788-64342807 | None:intergenic | 50.0% | |
| ACATCACCTTCTTCTCCTCC+TGG | - | chr4_3:64343020-64343039 | None:intergenic | 50.0% | |
| TCACCAACTGGATGCCTTAC+TGG | - | chr4_3:64343089-64343108 | None:intergenic | 50.0% | |
| CGACATGCAAAGTCACCAAC+TGG | - | chr4_3:64343101-64343120 | None:intergenic | 50.0% | |
| TGCCTCTTCTTCCTTGAGTG+TGG | - | chr4_3:64343187-64343206 | None:intergenic | 50.0% | |
| TCAATGCAGGCCAAAGGGTT+AGG | - | chr4_3:64341507-64341526 | None:intergenic | 50.0% | |
| GTCAGTCAATGCAGGCCAAA+GGG | - | chr4_3:64341512-64341531 | None:intergenic | 50.0% | |
| AGTCAGTCAATGCAGGCCAA+AGG | - | chr4_3:64341513-64341532 | None:intergenic | 50.0% | |
| CTAGGGAAGAACCATAGCTG+AGG | - | chr4_3:64341685-64341704 | None:intergenic | 50.0% | |
| CTCAGCTATGGTTCTTCCCT+AGG | + | chr4_3:64341683-64341702 | Msa0655630:CDS | 50.0% | |
| GCTATGGTTCTTCCCTAGGT+TGG | + | chr4_3:64341687-64341706 | Msa0655630:CDS | 50.0% | |
| !! | CCACTGGTTGGTGCCATATA+GGG | - | chr4_3:64342155-64342174 | None:intergenic | 50.0% |
| !! | TCCACTGGTTGGTGCCATAT+AGG | - | chr4_3:64342156-64342175 | None:intergenic | 50.0% |
| GCACATTGCAACCGCAATTG+TGG | - | chr4_3:64342788-64342807 | None:intergenic | 50.0% | |
| ACATCACCTTCTTCTCCTCC+TGG | - | chr4_3:64343020-64343039 | None:intergenic | 50.0% | |
| TCACCAACTGGATGCCTTAC+TGG | - | chr4_3:64343089-64343108 | None:intergenic | 50.0% | |
| CGACATGCAAAGTCACCAAC+TGG | - | chr4_3:64343101-64343120 | None:intergenic | 50.0% | |
| TGCCTCTTCTTCCTTGAGTG+TGG | - | chr4_3:64343187-64343206 | None:intergenic | 50.0% | |
| CCCTATATGGCACCAACCAG+TGG | + | chr4_3:64342152-64342171 | Msa0655630:CDS | 55.0% | |
| !!! | TGGGGTGTCTCTGCTGGTTT+TGG | - | chr4_3:64342669-64342688 | None:intergenic | 55.0% |
| GTGAAGCCAGGAGGAGAAGA+AGG | + | chr4_3:64343011-64343030 | Msa0655630:CDS | 55.0% | |
| TGCCTCCAACAAGGCCAGTA+AGG | + | chr4_3:64343072-64343091 | Msa0655630:CDS | 55.0% | |
| !! | TGCCTTACTGGCCTTGTTGG+AGG | - | chr4_3:64343077-64343096 | None:intergenic | 55.0% |
| !! | GGATGCCTTACTGGCCTTGT+TGG | - | chr4_3:64343080-64343099 | None:intergenic | 55.0% |
| ! | AGGCCAGTAAGGCATCCAGT+TGG | + | chr4_3:64343083-64343102 | Msa0655630:CDS | 55.0% |
| GGACCTTGTGCAGATACGCA+TGG | - | chr4_3:64343125-64343144 | None:intergenic | 55.0% | |
| TGCGTATCTGCACAAGGTCC+AGG | + | chr4_3:64343125-64343144 | Msa0655630:CDS | 55.0% | |
| ACTGCTTTGCCTGAAAGGCC+TGG | - | chr4_3:64343146-64343165 | None:intergenic | 55.0% | |
| AGGCCTTTCAGGCAAAGCAG+TGG | + | chr4_3:64343145-64343164 | Msa0655630:CDS | 55.0% | |
| CCACCACTGCTTTGCCTGAA+AGG | - | chr4_3:64343151-64343170 | None:intergenic | 55.0% | |
| CCTTTCAGGCAAAGCAGTGG+TGG | + | chr4_3:64343148-64343167 | Msa0655630:CDS | 55.0% | |
| CCCTATATGGCACCAACCAG+TGG | + | chr4_3:64342152-64342171 | Msa0655630:CDS | 55.0% | |
| !!! | TGGGGTGTCTCTGCTGGTTT+TGG | - | chr4_3:64342669-64342688 | None:intergenic | 55.0% |
| GTGAAGCCAGGAGGAGAAGA+AGG | + | chr4_3:64343011-64343030 | Msa0655630:CDS | 55.0% | |
| TGCCTCCAACAAGGCCAGTA+AGG | + | chr4_3:64343072-64343091 | Msa0655630:CDS | 55.0% | |
| !! | TGCCTTACTGGCCTTGTTGG+AGG | - | chr4_3:64343077-64343096 | None:intergenic | 55.0% |
| !! | GGATGCCTTACTGGCCTTGT+TGG | - | chr4_3:64343080-64343099 | None:intergenic | 55.0% |
| ! | AGGCCAGTAAGGCATCCAGT+TGG | + | chr4_3:64343083-64343102 | Msa0655630:CDS | 55.0% |
| GGACCTTGTGCAGATACGCA+TGG | - | chr4_3:64343125-64343144 | None:intergenic | 55.0% | |
| TGCGTATCTGCACAAGGTCC+AGG | + | chr4_3:64343125-64343144 | Msa0655630:CDS | 55.0% | |
| ACTGCTTTGCCTGAAAGGCC+TGG | - | chr4_3:64343146-64343165 | None:intergenic | 55.0% | |
| AGGCCTTTCAGGCAAAGCAG+TGG | + | chr4_3:64343145-64343164 | Msa0655630:CDS | 55.0% | |
| CCACCACTGCTTTGCCTGAA+AGG | - | chr4_3:64343151-64343170 | None:intergenic | 55.0% | |
| CCTTTCAGGCAAAGCAGTGG+TGG | + | chr4_3:64343148-64343167 | Msa0655630:CDS | 55.0% | |
| ACCAGCAGAGACACCCCACT+TGG | + | chr4_3:64342671-64342690 | Msa0655630:intron | 60.0% | |
| ! | ACCAAGTGGGGTGTCTCTGC+TGG | - | chr4_3:64342675-64342694 | None:intergenic | 60.0% |
| CGGCCATGCGTATCTGCACA+AGG | + | chr4_3:64343119-64343138 | Msa0655630:CDS | 60.0% | |
| GCACAAGGTCCAGGCCTTTC+AGG | + | chr4_3:64343134-64343153 | Msa0655630:CDS | 60.0% | |
| ACCAGCAGAGACACCCCACT+TGG | + | chr4_3:64342671-64342690 | Msa0655630:intron | 60.0% | |
| ! | ACCAAGTGGGGTGTCTCTGC+TGG | - | chr4_3:64342675-64342694 | None:intergenic | 60.0% |
| CGGCCATGCGTATCTGCACA+AGG | + | chr4_3:64343119-64343138 | Msa0655630:CDS | 60.0% | |
| GCACAAGGTCCAGGCCTTTC+AGG | + | chr4_3:64343134-64343153 | Msa0655630:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 64341470 | 64343472 | 64341470 | ID=Msa0655630;Name=Msa0655630 |
| chr4_3 | mRNA | 64341470 | 64343472 | 64341470 | ID=Msa0655630-mRNA-1;Parent=Msa0655630;Name=Msa0655630-mRNA-1;_AED=0.18;_eAED=0.18;_QI=177|0.66|1|1|1|1|4|237|224 |
| chr4_3 | exon | 64341470 | 64341755 | 64341470 | ID=Msa0655630-mRNA-1:exon:18175;Parent=Msa0655630-mRNA-1 |
| chr4_3 | exon | 64341873 | 64342036 | 64341873 | ID=Msa0655630-mRNA-1:exon:18176;Parent=Msa0655630-mRNA-1 |
| chr4_3 | exon | 64342138 | 64342222 | 64342138 | ID=Msa0655630-mRNA-1:exon:18177;Parent=Msa0655630-mRNA-1 |
| chr4_3 | exon | 64342919 | 64343472 | 64342919 | ID=Msa0655630-mRNA-1:exon:18178;Parent=Msa0655630-mRNA-1 |
| chr4_3 | five_prime_UTR | 64341470 | 64341646 | 64341470 | ID=Msa0655630-mRNA-1:five_prime_utr;Parent=Msa0655630-mRNA-1 |
| chr4_3 | CDS | 64341647 | 64341755 | 64341647 | ID=Msa0655630-mRNA-1:cds;Parent=Msa0655630-mRNA-1 |
| chr4_3 | CDS | 64341873 | 64342036 | 64341873 | ID=Msa0655630-mRNA-1:cds;Parent=Msa0655630-mRNA-1 |
| chr4_3 | CDS | 64342138 | 64342222 | 64342138 | ID=Msa0655630-mRNA-1:cds;Parent=Msa0655630-mRNA-1 |
| chr4_3 | CDS | 64342919 | 64343235 | 64342919 | ID=Msa0655630-mRNA-1:cds;Parent=Msa0655630-mRNA-1 |
| chr4_3 | three_prime_UTR | 64343236 | 64343472 | 64343236 | ID=Msa0655630-mRNA-1:three_prime_utr;Parent=Msa0655630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
