Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562290 | XP_039684413.1 | 74.820 | 278 | 16 | 3 | 1 | 224 | 1 | 278 | 4.38e-138 | 398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562290 | sp|Q6NLW5|XRI1_ARATH | 40.566 | 106 | 53 | 3 | 123 | 224 | 201 | 300 | 1.67e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562290 | A0A396GQ56 | 74.820 | 278 | 16 | 3 | 1 | 224 | 1 | 278 | 2.09e-138 | 398 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002580 | Msa0562290 | 0.802777 | 4.774811e-49 | -8.615850e-47 |
| Msa0436910 | Msa0562290 | 0.809662 | 1.694049e-50 | -8.615850e-47 |
| Msa0528570 | Msa0562290 | 0.801417 | 9.093435e-49 | -8.615850e-47 |
| Msa0562290 | Msa0604420 | 0.840518 | 8.287544e-58 | -8.615850e-47 |
| Msa0562290 | Msa0655630 | 0.954864 | 1.127960e-112 | -8.615850e-47 |
| Msa0562290 | Msa0699490 | 0.894077 | 3.459185e-75 | -8.615850e-47 |
| Msa0562290 | Msa1265650 | 0.805463 | 1.318910e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562290 | MtrunA17_Chr8g0375391 | 74.820 | 278 | 16 | 3 | 1 | 224 | 1 | 278 | 4.03e-142 | 398 |
| Msa0562290 | MtrunA17_Chr3g0109931 | 36.979 | 192 | 92 | 6 | 50 | 224 | 21 | 200 | 4.92e-30 | 110 |
| Msa0562290 | MtrunA17_Chr7g0236031 | 30.973 | 226 | 125 | 8 | 5 | 224 | 106 | 306 | 8.17e-17 | 77.4 |
| Msa0562290 | MtrunA17_Chr8g0340041 | 38.384 | 99 | 51 | 2 | 129 | 224 | 209 | 300 | 1.54e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562290 | AT2G01990.2 | 47.541 | 244 | 78 | 8 | 21 | 224 | 11 | 244 | 3.37e-59 | 187 |
| Msa0562290 | AT1G14630.1 | 49.569 | 232 | 88 | 7 | 13 | 224 | 4 | 226 | 2.56e-58 | 184 |
| Msa0562290 | AT2G01990.1 | 50.725 | 207 | 60 | 6 | 50 | 224 | 17 | 213 | 3.24e-56 | 178 |
| Msa0562290 | AT5G48720.2 | 40.566 | 106 | 53 | 3 | 123 | 224 | 201 | 300 | 1.69e-15 | 74.3 |
| Msa0562290 | AT5G48720.4 | 40.566 | 106 | 53 | 3 | 123 | 224 | 201 | 300 | 1.69e-15 | 74.3 |
| Msa0562290 | AT5G48720.1 | 45.679 | 81 | 38 | 2 | 144 | 224 | 192 | 266 | 2.10e-15 | 73.6 |
| Msa0562290 | AT5G48720.3 | 45.679 | 81 | 38 | 2 | 144 | 224 | 192 | 266 | 2.10e-15 | 73.6 |
Find 67 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACAAGGTCCAGGCCTTTC+AGG | 0.243748 | 4_1:+61968340 | Msa0562290:CDS |
| TCACCAACTGGATGCCTTAC+TGG | 0.271694 | 4_1:-61968292 | None:intergenic |
| CCACTGGTTGGTGCCATATA+GGG | 0.272649 | 4_1:-61967352 | None:intergenic |
| TCTGGAATTTCAACCCTATA+TGG | 0.295231 | 4_1:+61967339 | Msa0562290:CDS |
| TTGAATGAGTTTAGTATAGT+TGG | 0.332190 | 4_1:-61966733 | None:intergenic |
| CTATGGTTCTTCCCTAGGTT+GGG | 0.351214 | 4_1:+61966888 | Msa0562290:CDS |
| ATATAAAAGTGAATGTTTCT+TGG | 0.352532 | 4_1:-61966679 | None:intergenic |
| TCCACTGGTTGGTGCCATAT+AGG | 0.356387 | 4_1:-61967353 | None:intergenic |
| CTTGAGTGTGGATTCTAGTA+AGG | 0.359570 | 4_1:-61968378 | None:intergenic |
| TATAAAAGTGAATGTTTCTT+GGG | 0.359705 | 4_1:-61966678 | None:intergenic |
| GGATGCCTTACTGGCCTTGT+TGG | 0.361970 | 4_1:-61968283 | None:intergenic |
| GGTGATGAGAAAGAAGAAAA+AGG | 0.363465 | 4_1:+61968150 | Msa0562290:CDS |
| ACATGAAAACAAAGCAAATC+AGG | 0.370570 | 4_1:-61968531 | None:intergenic |
| GGTTGGGATTATCACAATCT+TGG | 0.380286 | 4_1:+61966904 | Msa0562290:CDS |
| CAAGAGTCTGATTTCTCAAC+TGG | 0.388114 | 4_1:+61967105 | Msa0562290:CDS |
| GTCTATTTATGTACAAGTTA+TGG | 0.405893 | 4_1:-61966783 | None:intergenic |
| GCTATGGTTCTTCCCTAGGT+TGG | 0.416564 | 4_1:+61966887 | Msa0562290:CDS |
| CCACCACTGCTTTGCCTGAA+AGG | 0.422228 | 4_1:-61968354 | None:intergenic |
| TTCGATCTTTACAATTTAGC+AGG | 0.422270 | 4_1:-61968554 | None:intergenic |
| ACATCACCTTCTTCTCCTCC+TGG | 0.426500 | 4_1:-61968223 | None:intergenic |
| GTACTGTGAATGTTAGCCTT+TGG | 0.428209 | 4_1:-61968431 | None:intergenic |
| TGGTTATCTTGAAGATGCTT+TGG | 0.432715 | 4_1:+61967125 | Msa0562290:CDS |
| TCAATGCAGGCCAAAGGGTT+AGG | 0.439774 | 4_1:-61966704 | None:intergenic |
| TGCCTTACTGGCCTTGTTGG+AGG | 0.444848 | 4_1:-61968280 | None:intergenic |
| CTCAGCTATGGTTCTTCCCT+AGG | 0.445329 | 4_1:+61966883 | Msa0562290:CDS |
| CCTGGCTTCACTAATGCAAA+TGG | 0.448137 | 4_1:-61968205 | None:intergenic |
| TACCTTATCAAAATCATCAA+TGG | 0.460583 | 4_1:-61967217 | None:intergenic |
| GAAGATGCTTTGGTTGAGTT+CGG | 0.464739 | 4_1:+61967135 | Msa0562290:CDS |
| TGCCTCCAACAAGGCCAGTA+AGG | 0.471163 | 4_1:+61968278 | Msa0562290:CDS |
| ACTGCTTTGCCTGAAAGGCC+TGG | 0.473365 | 4_1:-61968349 | None:intergenic |
| TGCGTATCTGCACAAGGTCC+AGG | 0.484327 | 4_1:+61968331 | Msa0562290:CDS |
| GATCAGATAGAAAGGATTTG+TGG | 0.485973 | 4_1:+61967392 | Msa0562290:CDS |
| GTGAAGCCAGGAGGAGAAGA+AGG | 0.488620 | 4_1:+61968217 | Msa0562290:CDS |
| TGAGGCTATTAGTATAAGCT+AGG | 0.491943 | 4_1:-61966864 | None:intergenic |
| GTCAGTCAATGCAGGCCAAA+GGG | 0.501215 | 4_1:-61966709 | None:intergenic |
| CGACATGCAAAGTCACCAAC+TGG | 0.501594 | 4_1:-61968304 | None:intergenic |
| TGCCTCTTCTTCCTTGAGTG+TGG | 0.502866 | 4_1:-61968390 | None:intergenic |
| CCATTTGCATTAGTGAAGCC+AGG | 0.517544 | 4_1:+61968205 | Msa0562290:CDS |
| ACTGCATGGATCAGATAGAA+AGG | 0.538926 | 4_1:+61967384 | Msa0562290:CDS |
| GATTGTGATAATCCCAACCT+AGG | 0.542350 | 4_1:-61966900 | None:intergenic |
| CCTTTCAGGCAAAGCAGTGG+TGG | 0.557492 | 4_1:+61968354 | Msa0562290:CDS |
| TTGAGTGTGGATTCTAGTAA+GGG | 0.559111 | 4_1:-61968377 | None:intergenic |
| TAGTTGGAGTCAGTCAATGC+AGG | 0.570897 | 4_1:-61966717 | None:intergenic |
| AGTGGAGAATTTCTACTGCA+TGG | 0.572678 | 4_1:+61967370 | Msa0562290:CDS |
| CCCTATATGGCACCAACCAG+TGG | 0.576336 | 4_1:+61967352 | Msa0562290:CDS |
| AGTCAGTCAATGCAGGCCAA+AGG | 0.577387 | 4_1:-61966710 | None:intergenic |
| ATCACTATTATCAGAACCAA+AGG | 0.578340 | 4_1:+61968415 | Msa0562290:CDS |
| ATCCACACTCAAGGAAGAAG+AGG | 0.597837 | 4_1:+61968388 | Msa0562290:CDS |
| CATTGAATGACATAAATGAA+AGG | 0.598530 | 4_1:+61968248 | Msa0562290:CDS |
| ATGCAGTAGAAATTCTCCAC+TGG | 0.600169 | 4_1:-61967368 | None:intergenic |
| GGACCTTGTGCAGATACGCA+TGG | 0.608397 | 4_1:-61968328 | None:intergenic |
| CAGTTGGTGACTTTGCATGT+CGG | 0.613753 | 4_1:+61968305 | Msa0562290:CDS |
| TTTGGTTCTGATAATAGTGA+TGG | 0.613771 | 4_1:-61968413 | None:intergenic |
| CGGCCATGCGTATCTGCACA+AGG | 0.617785 | 4_1:+61968325 | Msa0562290:CDS |
| ATTGTGATAATCCCAACCTA+GGG | 0.619431 | 4_1:-61966899 | None:intergenic |
| TATACTAATAGCCTCAGCTA+TGG | 0.624938 | 4_1:+61966871 | Msa0562290:CDS |
| AGTAGAAATTCTCCACTGGT+TGG | 0.629919 | 4_1:-61967364 | None:intergenic |
| GGATCTTAATGCCTCCAACA+AGG | 0.630736 | 4_1:+61968269 | Msa0562290:CDS |
| GAGGCTATTAGTATAAGCTA+GGG | 0.637394 | 4_1:-61966863 | None:intergenic |
| TAGTACTACTACTAGTGATG+AGG | 0.645618 | 4_1:+61968129 | Msa0562290:CDS |
| CTTACTAGAATCCACACTCA+AGG | 0.649499 | 4_1:+61968379 | Msa0562290:CDS |
| AAGGACAACAACAACAAGAG+TGG | 0.654506 | 4_1:+61968177 | Msa0562290:CDS |
| AGGCCTTTCAGGCAAAGCAG+TGG | 0.658996 | 4_1:+61968351 | Msa0562290:CDS |
| AGGCCAGTAAGGCATCCAGT+TGG | 0.681142 | 4_1:+61968289 | Msa0562290:CDS |
| GAAACTATATTGTATACACA+TGG | 0.690384 | 4_1:-61968624 | None:intergenic |
| CTAGGGAAGAACCATAGCTG+AGG | 0.694216 | 4_1:-61966882 | None:intergenic |
| TTTGCATTAGTGAAGCCAGG+AGG | 0.731178 | 4_1:+61968208 | Msa0562290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATTGTAGTAAAATA+CGG | + | chr4_1:61967967-61967986 | Msa0562290:intron | 10.0% |
| !! | AAAACTATAAATATATCATA+TGG | + | chr4_1:61968075-61968094 | Msa0562290:intron | 10.0% |
| !!! | TTTTATATTGTAGTAAAATA+CGG | + | chr4_1:61967967-61967986 | Msa0562290:intron | 10.0% |
| !! | AAAACTATAAATATATCATA+TGG | + | chr4_1:61968075-61968094 | Msa0562290:intron | 10.0% |
| !! | TGATATTGAATTATATGATA+TGG | + | chr4_1:61967047-61967066 | Msa0562290:intron | 15.0% |
| !! | AATTTCAAACTTAAAATGAA+AGG | - | chr4_1:61967269-61967288 | None:intergenic | 15.0% |
| !! | AAATCAAAAGAAAAGAATAA+AGG | + | chr4_1:61967576-61967595 | Msa0562290:intron | 15.0% |
| !! | TTTATATACTCTATTACATA+TGG | + | chr4_1:61967906-61967925 | Msa0562290:intron | 15.0% |
| !! | TGATATTGAATTATATGATA+TGG | + | chr4_1:61967047-61967066 | Msa0562290:intron | 15.0% |
| !! | AATTTCAAACTTAAAATGAA+AGG | - | chr4_1:61967269-61967288 | None:intergenic | 15.0% |
| !! | AAATCAAAAGAAAAGAATAA+AGG | + | chr4_1:61967576-61967595 | Msa0562290:intron | 15.0% |
| !! | TTTATATACTCTATTACATA+TGG | + | chr4_1:61967906-61967925 | Msa0562290:intron | 15.0% |
| !! | TATAAAAGTGAATGTTTCTT+GGG | - | chr4_1:61966681-61966700 | None:intergenic | 20.0% |
| !! | ATATAAAAGTGAATGTTTCT+TGG | - | chr4_1:61966682-61966701 | None:intergenic | 20.0% |
| !!! | AAGAAAATAGAAAAAGCATA+TGG | - | chr4_1:61966763-61966782 | None:intergenic | 20.0% |
| !! | ATTATATGATATGGTAGTTA+TGG | + | chr4_1:61967056-61967075 | Msa0562290:intron | 20.0% |
| !! | TATGTAACTATATATAGTTC+TGG | + | chr4_1:61967321-61967340 | Msa0562290:intron | 20.0% |
| !! | AATTGATTGAGAATTGAAAA+AGG | + | chr4_1:61967544-61967563 | Msa0562290:intron | 20.0% |
| !!! | TCTTTTCTTTTGATTTCTTT+GGG | - | chr4_1:61967572-61967591 | None:intergenic | 20.0% |
| !!! | TTCTTTTCTTTTGATTTCTT+TGG | - | chr4_1:61967573-61967592 | None:intergenic | 20.0% |
| !!! | TATATAAAAGTATACCAAGT+GGG | - | chr4_1:61967894-61967913 | None:intergenic | 20.0% |
| !! | TATAAAAGTGAATGTTTCTT+GGG | - | chr4_1:61966681-61966700 | None:intergenic | 20.0% |
| !! | ATATAAAAGTGAATGTTTCT+TGG | - | chr4_1:61966682-61966701 | None:intergenic | 20.0% |
| !!! | AAGAAAATAGAAAAAGCATA+TGG | - | chr4_1:61966763-61966782 | None:intergenic | 20.0% |
| !! | ATTATATGATATGGTAGTTA+TGG | + | chr4_1:61967056-61967075 | Msa0562290:intron | 20.0% |
| !! | TATGTAACTATATATAGTTC+TGG | + | chr4_1:61967321-61967340 | Msa0562290:intron | 20.0% |
| !! | AATTGATTGAGAATTGAAAA+AGG | + | chr4_1:61967544-61967563 | Msa0562290:intron | 20.0% |
| !!! | TCTTTTCTTTTGATTTCTTT+GGG | - | chr4_1:61967572-61967591 | None:intergenic | 20.0% |
| !!! | TTCTTTTCTTTTGATTTCTT+TGG | - | chr4_1:61967573-61967592 | None:intergenic | 20.0% |
| !!! | TATATAAAAGTATACCAAGT+GGG | - | chr4_1:61967894-61967913 | None:intergenic | 20.0% |
| !! | TTTTATATATCCTAACCCTT+TGG | + | chr4_1:61966694-61966713 | Msa0562290:five_prime_UTR | 25.0% |
| ! | TTGAATGAGTTTAGTATAGT+TGG | - | chr4_1:61966736-61966755 | None:intergenic | 25.0% |
| ! | GTCTATTTATGTACAAGTTA+TGG | - | chr4_1:61966786-61966805 | None:intergenic | 25.0% |
| !!! | TTCCATTGATGATTTTGATA+AGG | + | chr4_1:61967215-61967234 | Msa0562290:CDS | 25.0% |
| ! | TACCTTATCAAAATCATCAA+TGG | - | chr4_1:61967220-61967239 | None:intergenic | 25.0% |
| !!! | TTTGAAATTCTTGTTGTTCT+TGG | + | chr4_1:61967280-61967299 | Msa0562290:intron | 25.0% |
| ! | TAATTCTTTGTATGAAGATG+AGG | - | chr4_1:61967836-61967855 | None:intergenic | 25.0% |
| !! | ATATAAAAGTATACCAAGTG+GGG | - | chr4_1:61967893-61967912 | None:intergenic | 25.0% |
| !! | GTATATAAAAGTATACCAAG+TGG | - | chr4_1:61967895-61967914 | None:intergenic | 25.0% |
| ! | CATTGAATGACATAAATGAA+AGG | + | chr4_1:61968248-61968267 | Msa0562290:CDS | 25.0% |
| !!! | TTTTGTTATCATGCATGTTA+TGG | + | chr4_1:61968466-61968485 | Msa0562290:three_prime_UTR | 25.0% |
| ! | GAAACTATATTGTATACACA+TGG | - | chr4_1:61968627-61968646 | None:intergenic | 25.0% |
| !! | TTTTATATATCCTAACCCTT+TGG | + | chr4_1:61966694-61966713 | Msa0562290:five_prime_UTR | 25.0% |
| ! | TTGAATGAGTTTAGTATAGT+TGG | - | chr4_1:61966736-61966755 | None:intergenic | 25.0% |
| ! | GTCTATTTATGTACAAGTTA+TGG | - | chr4_1:61966786-61966805 | None:intergenic | 25.0% |
| !!! | TTCCATTGATGATTTTGATA+AGG | + | chr4_1:61967215-61967234 | Msa0562290:CDS | 25.0% |
| ! | TACCTTATCAAAATCATCAA+TGG | - | chr4_1:61967220-61967239 | None:intergenic | 25.0% |
| !!! | TTTGAAATTCTTGTTGTTCT+TGG | + | chr4_1:61967280-61967299 | Msa0562290:intron | 25.0% |
| ! | TAATTCTTTGTATGAAGATG+AGG | - | chr4_1:61967836-61967855 | None:intergenic | 25.0% |
| !! | ATATAAAAGTATACCAAGTG+GGG | - | chr4_1:61967893-61967912 | None:intergenic | 25.0% |
| !! | GTATATAAAAGTATACCAAG+TGG | - | chr4_1:61967895-61967914 | None:intergenic | 25.0% |
| ! | CATTGAATGACATAAATGAA+AGG | + | chr4_1:61968248-61968267 | Msa0562290:CDS | 25.0% |
| !!! | TTTTGTTATCATGCATGTTA+TGG | + | chr4_1:61968466-61968485 | Msa0562290:three_prime_UTR | 25.0% |
| ! | GAAACTATATTGTATACACA+TGG | - | chr4_1:61968627-61968646 | None:intergenic | 25.0% |
| ! | ATATGACGTGATGATCATTT+TGG | + | chr4_1:61967465-61967484 | Msa0562290:intron | 30.0% |
| !!! | GATGATCATTTTGGTTCAAA+AGG | + | chr4_1:61967474-61967493 | Msa0562290:intron | 30.0% |
| ATGAACATATAAGCACATTG+AGG | + | chr4_1:61967722-61967741 | Msa0562290:intron | 30.0% | |
| !!! | CTGGTTTTGGATATTGTTAA+TGG | - | chr4_1:61967862-61967881 | None:intergenic | 30.0% |
| !! | TTTGGTTCTGATAATAGTGA+TGG | - | chr4_1:61968416-61968435 | None:intergenic | 30.0% |
| ATCACTATTATCAGAACCAA+AGG | + | chr4_1:61968415-61968434 | Msa0562290:CDS | 30.0% | |
| ACATGAAAACAAAGCAAATC+AGG | - | chr4_1:61968534-61968553 | None:intergenic | 30.0% | |
| TTCGATCTTTACAATTTAGC+AGG | - | chr4_1:61968557-61968576 | None:intergenic | 30.0% | |
| ! | ATATGACGTGATGATCATTT+TGG | + | chr4_1:61967465-61967484 | Msa0562290:intron | 30.0% |
| !!! | GATGATCATTTTGGTTCAAA+AGG | + | chr4_1:61967474-61967493 | Msa0562290:intron | 30.0% |
| ATGAACATATAAGCACATTG+AGG | + | chr4_1:61967722-61967741 | Msa0562290:intron | 30.0% | |
| !!! | CTGGTTTTGGATATTGTTAA+TGG | - | chr4_1:61967862-61967881 | None:intergenic | 30.0% |
| !! | TTTGGTTCTGATAATAGTGA+TGG | - | chr4_1:61968416-61968435 | None:intergenic | 30.0% |
| ATCACTATTATCAGAACCAA+AGG | + | chr4_1:61968415-61968434 | Msa0562290:CDS | 30.0% | |
| ACATGAAAACAAAGCAAATC+AGG | - | chr4_1:61968534-61968553 | None:intergenic | 30.0% | |
| TTCGATCTTTACAATTTAGC+AGG | - | chr4_1:61968557-61968576 | None:intergenic | 30.0% | |
| TGACAAAAAATGATGAGGAG+GGG | - | chr4_1:61966808-61966827 | None:intergenic | 35.0% | |
| GTGACAAAAAATGATGAGGA+GGG | - | chr4_1:61966809-61966828 | None:intergenic | 35.0% | |
| TGTGACAAAAAATGATGAGG+AGG | - | chr4_1:61966810-61966829 | None:intergenic | 35.0% | |
| GTGTGTGACAAAAAATGATG+AGG | - | chr4_1:61966813-61966832 | None:intergenic | 35.0% | |
| GAGGCTATTAGTATAAGCTA+GGG | - | chr4_1:61966866-61966885 | None:intergenic | 35.0% | |
| TGAGGCTATTAGTATAAGCT+AGG | - | chr4_1:61966867-61966886 | None:intergenic | 35.0% | |
| TATACTAATAGCCTCAGCTA+TGG | + | chr4_1:61966871-61966890 | Msa0562290:CDS | 35.0% | |
| ATTGTGATAATCCCAACCTA+GGG | - | chr4_1:61966902-61966921 | None:intergenic | 35.0% | |
| TGGTTATCTTGAAGATGCTT+TGG | + | chr4_1:61967125-61967144 | Msa0562290:CDS | 35.0% | |
| ! | TCTGGAATTTCAACCCTATA+TGG | + | chr4_1:61967339-61967358 | Msa0562290:CDS | 35.0% |
| GATCAGATAGAAAGGATTTG+TGG | + | chr4_1:61967392-61967411 | Msa0562290:CDS | 35.0% | |
| ! | GAAAGGATTTGTGGATTTTC+AGG | + | chr4_1:61967401-61967420 | Msa0562290:CDS | 35.0% |
| ! | GTGTCTTCTAGAAGAATGTT+TGG | - | chr4_1:61967766-61967785 | None:intergenic | 35.0% |
| TATGAAGATGAGGAGGAATT+TGG | - | chr4_1:61967826-61967845 | None:intergenic | 35.0% | |
| TTCTTTGTATGAAGATGAGG+AGG | - | chr4_1:61967833-61967852 | None:intergenic | 35.0% | |
| TAAAATACGGACCACAATTG+CGG | + | chr4_1:61967980-61967999 | Msa0562290:intron | 35.0% | |
| TAGTACTACTACTAGTGATG+AGG | + | chr4_1:61968129-61968148 | Msa0562290:CDS | 35.0% | |
| GGTGATGAGAAAGAAGAAAA+AGG | + | chr4_1:61968150-61968169 | Msa0562290:CDS | 35.0% | |
| GATGAGAAAGAAGAAAAAGG+TGG | + | chr4_1:61968153-61968172 | Msa0562290:CDS | 35.0% | |
| GAAAGAAGAAAAAGGTGGTA+AGG | + | chr4_1:61968158-61968177 | Msa0562290:CDS | 35.0% | |
| TTGAGTGTGGATTCTAGTAA+GGG | - | chr4_1:61968380-61968399 | None:intergenic | 35.0% | |
| TGACAAAAAATGATGAGGAG+GGG | - | chr4_1:61966808-61966827 | None:intergenic | 35.0% | |
| GTGACAAAAAATGATGAGGA+GGG | - | chr4_1:61966809-61966828 | None:intergenic | 35.0% | |
| TGTGACAAAAAATGATGAGG+AGG | - | chr4_1:61966810-61966829 | None:intergenic | 35.0% | |
| GTGTGTGACAAAAAATGATG+AGG | - | chr4_1:61966813-61966832 | None:intergenic | 35.0% | |
| GAGGCTATTAGTATAAGCTA+GGG | - | chr4_1:61966866-61966885 | None:intergenic | 35.0% | |
| TGAGGCTATTAGTATAAGCT+AGG | - | chr4_1:61966867-61966886 | None:intergenic | 35.0% | |
| TATACTAATAGCCTCAGCTA+TGG | + | chr4_1:61966871-61966890 | Msa0562290:CDS | 35.0% | |
| ATTGTGATAATCCCAACCTA+GGG | - | chr4_1:61966902-61966921 | None:intergenic | 35.0% | |
| TGGTTATCTTGAAGATGCTT+TGG | + | chr4_1:61967125-61967144 | Msa0562290:CDS | 35.0% | |
| ! | TCTGGAATTTCAACCCTATA+TGG | + | chr4_1:61967339-61967358 | Msa0562290:CDS | 35.0% |
| GATCAGATAGAAAGGATTTG+TGG | + | chr4_1:61967392-61967411 | Msa0562290:CDS | 35.0% | |
| ! | GAAAGGATTTGTGGATTTTC+AGG | + | chr4_1:61967401-61967420 | Msa0562290:CDS | 35.0% |
| ! | GTGTCTTCTAGAAGAATGTT+TGG | - | chr4_1:61967766-61967785 | None:intergenic | 35.0% |
| TATGAAGATGAGGAGGAATT+TGG | - | chr4_1:61967826-61967845 | None:intergenic | 35.0% | |
| TTCTTTGTATGAAGATGAGG+AGG | - | chr4_1:61967833-61967852 | None:intergenic | 35.0% | |
| TAAAATACGGACCACAATTG+CGG | + | chr4_1:61967980-61967999 | Msa0562290:intron | 35.0% | |
| TAGTACTACTACTAGTGATG+AGG | + | chr4_1:61968129-61968148 | Msa0562290:CDS | 35.0% | |
| GGTGATGAGAAAGAAGAAAA+AGG | + | chr4_1:61968150-61968169 | Msa0562290:CDS | 35.0% | |
| GATGAGAAAGAAGAAAAAGG+TGG | + | chr4_1:61968153-61968172 | Msa0562290:CDS | 35.0% | |
| GAAAGAAGAAAAAGGTGGTA+AGG | + | chr4_1:61968158-61968177 | Msa0562290:CDS | 35.0% | |
| TTGAGTGTGGATTCTAGTAA+GGG | - | chr4_1:61968380-61968399 | None:intergenic | 35.0% | |
| GATTGTGATAATCCCAACCT+AGG | - | chr4_1:61966903-61966922 | None:intergenic | 40.0% | |
| GGTTGGGATTATCACAATCT+TGG | + | chr4_1:61966904-61966923 | Msa0562290:CDS | 40.0% | |
| CAAGAGTCTGATTTCTCAAC+TGG | + | chr4_1:61967105-61967124 | Msa0562290:CDS | 40.0% | |
| GAAGATGCTTTGGTTGAGTT+CGG | + | chr4_1:61967135-61967154 | Msa0562290:CDS | 40.0% | |
| AGTAGAAATTCTCCACTGGT+TGG | - | chr4_1:61967367-61967386 | None:intergenic | 40.0% | |
| ATGCAGTAGAAATTCTCCAC+TGG | - | chr4_1:61967371-61967390 | None:intergenic | 40.0% | |
| AGTGGAGAATTTCTACTGCA+TGG | + | chr4_1:61967370-61967389 | Msa0562290:CDS | 40.0% | |
| ACTGCATGGATCAGATAGAA+AGG | + | chr4_1:61967384-61967403 | Msa0562290:CDS | 40.0% | |
| GGAATTTGGAGATTCAGATG+CGG | - | chr4_1:61967812-61967831 | None:intergenic | 40.0% | |
| ! | ATGGTTTGCAACTGCAATTG+CGG | - | chr4_1:61968050-61968069 | None:intergenic | 40.0% |
| AAGGACAACAACAACAAGAG+TGG | + | chr4_1:61968177-61968196 | Msa0562290:CDS | 40.0% | |
| CTTGAGTGTGGATTCTAGTA+AGG | - | chr4_1:61968381-61968400 | None:intergenic | 40.0% | |
| CTTACTAGAATCCACACTCA+AGG | + | chr4_1:61968379-61968398 | Msa0562290:CDS | 40.0% | |
| !! | GTACTGTGAATGTTAGCCTT+TGG | - | chr4_1:61968434-61968453 | None:intergenic | 40.0% |
| GCAAATCAGGCTAAAAAAGC+TGG | - | chr4_1:61968521-61968540 | None:intergenic | 40.0% | |
| GATTGTGATAATCCCAACCT+AGG | - | chr4_1:61966903-61966922 | None:intergenic | 40.0% | |
| GGTTGGGATTATCACAATCT+TGG | + | chr4_1:61966904-61966923 | Msa0562290:CDS | 40.0% | |
| CAAGAGTCTGATTTCTCAAC+TGG | + | chr4_1:61967105-61967124 | Msa0562290:CDS | 40.0% | |
| GAAGATGCTTTGGTTGAGTT+CGG | + | chr4_1:61967135-61967154 | Msa0562290:CDS | 40.0% | |
| AGTAGAAATTCTCCACTGGT+TGG | - | chr4_1:61967367-61967386 | None:intergenic | 40.0% | |
| ATGCAGTAGAAATTCTCCAC+TGG | - | chr4_1:61967371-61967390 | None:intergenic | 40.0% | |
| AGTGGAGAATTTCTACTGCA+TGG | + | chr4_1:61967370-61967389 | Msa0562290:CDS | 40.0% | |
| ACTGCATGGATCAGATAGAA+AGG | + | chr4_1:61967384-61967403 | Msa0562290:CDS | 40.0% | |
| GGAATTTGGAGATTCAGATG+CGG | - | chr4_1:61967812-61967831 | None:intergenic | 40.0% | |
| ! | ATGGTTTGCAACTGCAATTG+CGG | - | chr4_1:61968050-61968069 | None:intergenic | 40.0% |
| AAGGACAACAACAACAAGAG+TGG | + | chr4_1:61968177-61968196 | Msa0562290:CDS | 40.0% | |
| CTTGAGTGTGGATTCTAGTA+AGG | - | chr4_1:61968381-61968400 | None:intergenic | 40.0% | |
| CTTACTAGAATCCACACTCA+AGG | + | chr4_1:61968379-61968398 | Msa0562290:CDS | 40.0% | |
| !! | GTACTGTGAATGTTAGCCTT+TGG | - | chr4_1:61968434-61968453 | None:intergenic | 40.0% |
| GCAAATCAGGCTAAAAAAGC+TGG | - | chr4_1:61968521-61968540 | None:intergenic | 40.0% | |
| TAGTTGGAGTCAGTCAATGC+AGG | - | chr4_1:61966720-61966739 | None:intergenic | 45.0% | |
| CTATGGTTCTTCCCTAGGTT+GGG | + | chr4_1:61966888-61966907 | Msa0562290:CDS | 45.0% | |
| TTGCAGTCACAATTACGCTG+CGG | + | chr4_1:61967942-61967961 | Msa0562290:intron | 45.0% | |
| CCTGGCTTCACTAATGCAAA+TGG | - | chr4_1:61968208-61968227 | None:intergenic | 45.0% | |
| CCATTTGCATTAGTGAAGCC+AGG | + | chr4_1:61968205-61968224 | Msa0562290:CDS | 45.0% | |
| TTTGCATTAGTGAAGCCAGG+AGG | + | chr4_1:61968208-61968227 | Msa0562290:CDS | 45.0% | |
| GGATCTTAATGCCTCCAACA+AGG | + | chr4_1:61968269-61968288 | Msa0562290:CDS | 45.0% | |
| !! | CAGTTGGTGACTTTGCATGT+CGG | + | chr4_1:61968305-61968324 | Msa0562290:CDS | 45.0% |
| ATCCACACTCAAGGAAGAAG+AGG | + | chr4_1:61968388-61968407 | Msa0562290:CDS | 45.0% | |
| TAGTTGGAGTCAGTCAATGC+AGG | - | chr4_1:61966720-61966739 | None:intergenic | 45.0% | |
| CTATGGTTCTTCCCTAGGTT+GGG | + | chr4_1:61966888-61966907 | Msa0562290:CDS | 45.0% | |
| TTGCAGTCACAATTACGCTG+CGG | + | chr4_1:61967942-61967961 | Msa0562290:intron | 45.0% | |
| CCTGGCTTCACTAATGCAAA+TGG | - | chr4_1:61968208-61968227 | None:intergenic | 45.0% | |
| CCATTTGCATTAGTGAAGCC+AGG | + | chr4_1:61968205-61968224 | Msa0562290:CDS | 45.0% | |
| TTTGCATTAGTGAAGCCAGG+AGG | + | chr4_1:61968208-61968227 | Msa0562290:CDS | 45.0% | |
| GGATCTTAATGCCTCCAACA+AGG | + | chr4_1:61968269-61968288 | Msa0562290:CDS | 45.0% | |
| !! | CAGTTGGTGACTTTGCATGT+CGG | + | chr4_1:61968305-61968324 | Msa0562290:CDS | 45.0% |
| ATCCACACTCAAGGAAGAAG+AGG | + | chr4_1:61968388-61968407 | Msa0562290:CDS | 45.0% | |
| !!! | TATTATTTTAATTTACTAAT+TGG | + | chr4_1:61967680-61967699 | Msa0562290:intron | 5.0% |
| !!! | ATATTTATAGTTTTAATTTA+TGG | - | chr4_1:61968069-61968088 | None:intergenic | 5.0% |
| !! | TATTATAAATTATTAAAAAC+AGG | + | chr4_1:61968103-61968122 | Msa0562290:intron | 5.0% |
| !!! | TATTATTTTAATTTACTAAT+TGG | + | chr4_1:61967680-61967699 | Msa0562290:intron | 5.0% |
| !!! | ATATTTATAGTTTTAATTTA+TGG | - | chr4_1:61968069-61968088 | None:intergenic | 5.0% |
| !! | TATTATAAATTATTAAAAAC+AGG | + | chr4_1:61968103-61968122 | Msa0562290:intron | 5.0% |
| TCAATGCAGGCCAAAGGGTT+AGG | - | chr4_1:61966707-61966726 | None:intergenic | 50.0% | |
| GTCAGTCAATGCAGGCCAAA+GGG | - | chr4_1:61966712-61966731 | None:intergenic | 50.0% | |
| AGTCAGTCAATGCAGGCCAA+AGG | - | chr4_1:61966713-61966732 | None:intergenic | 50.0% | |
| CTAGGGAAGAACCATAGCTG+AGG | - | chr4_1:61966885-61966904 | None:intergenic | 50.0% | |
| CTCAGCTATGGTTCTTCCCT+AGG | + | chr4_1:61966883-61966902 | Msa0562290:CDS | 50.0% | |
| GCTATGGTTCTTCCCTAGGT+TGG | + | chr4_1:61966887-61966906 | Msa0562290:CDS | 50.0% | |
| !! | CCACTGGTTGGTGCCATATA+GGG | - | chr4_1:61967355-61967374 | None:intergenic | 50.0% |
| !! | TCCACTGGTTGGTGCCATAT+AGG | - | chr4_1:61967356-61967375 | None:intergenic | 50.0% |
| GCACATTGCAACCGCAATTG+TGG | - | chr4_1:61967994-61968013 | None:intergenic | 50.0% | |
| ACATCACCTTCTTCTCCTCC+TGG | - | chr4_1:61968226-61968245 | None:intergenic | 50.0% | |
| TCACCAACTGGATGCCTTAC+TGG | - | chr4_1:61968295-61968314 | None:intergenic | 50.0% | |
| CGACATGCAAAGTCACCAAC+TGG | - | chr4_1:61968307-61968326 | None:intergenic | 50.0% | |
| TGCCTCTTCTTCCTTGAGTG+TGG | - | chr4_1:61968393-61968412 | None:intergenic | 50.0% | |
| TCAATGCAGGCCAAAGGGTT+AGG | - | chr4_1:61966707-61966726 | None:intergenic | 50.0% | |
| GTCAGTCAATGCAGGCCAAA+GGG | - | chr4_1:61966712-61966731 | None:intergenic | 50.0% | |
| AGTCAGTCAATGCAGGCCAA+AGG | - | chr4_1:61966713-61966732 | None:intergenic | 50.0% | |
| CTAGGGAAGAACCATAGCTG+AGG | - | chr4_1:61966885-61966904 | None:intergenic | 50.0% | |
| CTCAGCTATGGTTCTTCCCT+AGG | + | chr4_1:61966883-61966902 | Msa0562290:CDS | 50.0% | |
| GCTATGGTTCTTCCCTAGGT+TGG | + | chr4_1:61966887-61966906 | Msa0562290:CDS | 50.0% | |
| !! | CCACTGGTTGGTGCCATATA+GGG | - | chr4_1:61967355-61967374 | None:intergenic | 50.0% |
| !! | TCCACTGGTTGGTGCCATAT+AGG | - | chr4_1:61967356-61967375 | None:intergenic | 50.0% |
| GCACATTGCAACCGCAATTG+TGG | - | chr4_1:61967994-61968013 | None:intergenic | 50.0% | |
| ACATCACCTTCTTCTCCTCC+TGG | - | chr4_1:61968226-61968245 | None:intergenic | 50.0% | |
| TCACCAACTGGATGCCTTAC+TGG | - | chr4_1:61968295-61968314 | None:intergenic | 50.0% | |
| CGACATGCAAAGTCACCAAC+TGG | - | chr4_1:61968307-61968326 | None:intergenic | 50.0% | |
| TGCCTCTTCTTCCTTGAGTG+TGG | - | chr4_1:61968393-61968412 | None:intergenic | 50.0% | |
| CCCTATATGGCACCAACCAG+TGG | + | chr4_1:61967352-61967371 | Msa0562290:CDS | 55.0% | |
| !!! | TGGGGTGTCTCTGCTGGTTT+TGG | - | chr4_1:61967875-61967894 | None:intergenic | 55.0% |
| GTGAAGCCAGGAGGAGAAGA+AGG | + | chr4_1:61968217-61968236 | Msa0562290:CDS | 55.0% | |
| TGCCTCCAACAAGGCCAGTA+AGG | + | chr4_1:61968278-61968297 | Msa0562290:CDS | 55.0% | |
| !! | TGCCTTACTGGCCTTGTTGG+AGG | - | chr4_1:61968283-61968302 | None:intergenic | 55.0% |
| !! | GGATGCCTTACTGGCCTTGT+TGG | - | chr4_1:61968286-61968305 | None:intergenic | 55.0% |
| ! | AGGCCAGTAAGGCATCCAGT+TGG | + | chr4_1:61968289-61968308 | Msa0562290:CDS | 55.0% |
| GGACCTTGTGCAGATACGCA+TGG | - | chr4_1:61968331-61968350 | None:intergenic | 55.0% | |
| TGCGTATCTGCACAAGGTCC+AGG | + | chr4_1:61968331-61968350 | Msa0562290:CDS | 55.0% | |
| ACTGCTTTGCCTGAAAGGCC+TGG | - | chr4_1:61968352-61968371 | None:intergenic | 55.0% | |
| AGGCCTTTCAGGCAAAGCAG+TGG | + | chr4_1:61968351-61968370 | Msa0562290:CDS | 55.0% | |
| CCACCACTGCTTTGCCTGAA+AGG | - | chr4_1:61968357-61968376 | None:intergenic | 55.0% | |
| CCTTTCAGGCAAAGCAGTGG+TGG | + | chr4_1:61968354-61968373 | Msa0562290:CDS | 55.0% | |
| CCCTATATGGCACCAACCAG+TGG | + | chr4_1:61967352-61967371 | Msa0562290:CDS | 55.0% | |
| !!! | TGGGGTGTCTCTGCTGGTTT+TGG | - | chr4_1:61967875-61967894 | None:intergenic | 55.0% |
| GTGAAGCCAGGAGGAGAAGA+AGG | + | chr4_1:61968217-61968236 | Msa0562290:CDS | 55.0% | |
| TGCCTCCAACAAGGCCAGTA+AGG | + | chr4_1:61968278-61968297 | Msa0562290:CDS | 55.0% | |
| !! | TGCCTTACTGGCCTTGTTGG+AGG | - | chr4_1:61968283-61968302 | None:intergenic | 55.0% |
| !! | GGATGCCTTACTGGCCTTGT+TGG | - | chr4_1:61968286-61968305 | None:intergenic | 55.0% |
| ! | AGGCCAGTAAGGCATCCAGT+TGG | + | chr4_1:61968289-61968308 | Msa0562290:CDS | 55.0% |
| GGACCTTGTGCAGATACGCA+TGG | - | chr4_1:61968331-61968350 | None:intergenic | 55.0% | |
| TGCGTATCTGCACAAGGTCC+AGG | + | chr4_1:61968331-61968350 | Msa0562290:CDS | 55.0% | |
| ACTGCTTTGCCTGAAAGGCC+TGG | - | chr4_1:61968352-61968371 | None:intergenic | 55.0% | |
| AGGCCTTTCAGGCAAAGCAG+TGG | + | chr4_1:61968351-61968370 | Msa0562290:CDS | 55.0% | |
| CCACCACTGCTTTGCCTGAA+AGG | - | chr4_1:61968357-61968376 | None:intergenic | 55.0% | |
| CCTTTCAGGCAAAGCAGTGG+TGG | + | chr4_1:61968354-61968373 | Msa0562290:CDS | 55.0% | |
| ACCAGCAGAGACACCCCACT+TGG | + | chr4_1:61967877-61967896 | Msa0562290:intron | 60.0% | |
| ! | ACCAAGTGGGGTGTCTCTGC+TGG | - | chr4_1:61967881-61967900 | None:intergenic | 60.0% |
| CGGCCATGCGTATCTGCACA+AGG | + | chr4_1:61968325-61968344 | Msa0562290:CDS | 60.0% | |
| GCACAAGGTCCAGGCCTTTC+AGG | + | chr4_1:61968340-61968359 | Msa0562290:CDS | 60.0% | |
| ACCAGCAGAGACACCCCACT+TGG | + | chr4_1:61967877-61967896 | Msa0562290:intron | 60.0% | |
| ! | ACCAAGTGGGGTGTCTCTGC+TGG | - | chr4_1:61967881-61967900 | None:intergenic | 60.0% |
| CGGCCATGCGTATCTGCACA+AGG | + | chr4_1:61968325-61968344 | Msa0562290:CDS | 60.0% | |
| GCACAAGGTCCAGGCCTTTC+AGG | + | chr4_1:61968340-61968359 | Msa0562290:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 61966670 | 61968679 | 61966670 | ID=Msa0562290;Name=Msa0562290 |
| chr4_1 | mRNA | 61966670 | 61968679 | 61966670 | ID=Msa0562290-mRNA-1;Parent=Msa0562290;Name=Msa0562290-mRNA-1;_AED=0.18;_eAED=0.18;_QI=177|0.66|1|1|1|1|4|238|224 |
| chr4_1 | exon | 61966670 | 61966955 | 61966670 | ID=Msa0562290-mRNA-1:exon:19562;Parent=Msa0562290-mRNA-1 |
| chr4_1 | exon | 61967073 | 61967236 | 61967073 | ID=Msa0562290-mRNA-1:exon:19563;Parent=Msa0562290-mRNA-1 |
| chr4_1 | exon | 61967338 | 61967422 | 61967338 | ID=Msa0562290-mRNA-1:exon:19564;Parent=Msa0562290-mRNA-1 |
| chr4_1 | exon | 61968125 | 61968679 | 61968125 | ID=Msa0562290-mRNA-1:exon:19565;Parent=Msa0562290-mRNA-1 |
| chr4_1 | five_prime_UTR | 61966670 | 61966846 | 61966670 | ID=Msa0562290-mRNA-1:five_prime_utr;Parent=Msa0562290-mRNA-1 |
| chr4_1 | CDS | 61966847 | 61966955 | 61966847 | ID=Msa0562290-mRNA-1:cds;Parent=Msa0562290-mRNA-1 |
| chr4_1 | CDS | 61967073 | 61967236 | 61967073 | ID=Msa0562290-mRNA-1:cds;Parent=Msa0562290-mRNA-1 |
| chr4_1 | CDS | 61967338 | 61967422 | 61967338 | ID=Msa0562290-mRNA-1:cds;Parent=Msa0562290-mRNA-1 |
| chr4_1 | CDS | 61968125 | 61968441 | 61968125 | ID=Msa0562290-mRNA-1:cds;Parent=Msa0562290-mRNA-1 |
| chr4_1 | three_prime_UTR | 61968442 | 61968679 | 61968442 | ID=Msa0562290-mRNA-1:three_prime_utr;Parent=Msa0562290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
