Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0699490 | XP_039684413.1 | 74.820 | 278 | 16 | 3 | 1 | 224 | 1 | 278 | 4.38e-138 | 398 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0699490 | sp|Q6NLW5|XRI1_ARATH | 40.566 | 106 | 53 | 3 | 123 | 224 | 201 | 300 | 1.67e-14 | 74.3 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0699490 | A0A396GQ56 | 74.820 | 278 | 16 | 3 | 1 | 224 | 1 | 278 | 2.09e-138 | 398 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000050 | Msa0699490 | 0.817048 | 4.035437e-52 | -8.615850e-47 |
Msa0002580 | Msa0699490 | 0.830655 | 2.599386e-55 | -8.615850e-47 |
Msa0034810 | Msa0699490 | 0.819687 | 1.019006e-52 | -8.615850e-47 |
Msa0604420 | Msa0699490 | 0.829155 | 6.029176e-55 | -8.615850e-47 |
Msa0611210 | Msa0699490 | 0.831349 | 1.755679e-55 | -8.615850e-47 |
Msa0626450 | Msa0699490 | 0.803231 | 3.847720e-49 | -8.615850e-47 |
Msa0651550 | Msa0699490 | 0.820455 | 6.798691e-53 | -8.615850e-47 |
Msa0655630 | Msa0699490 | 0.909001 | 9.225184e-82 | -8.615850e-47 |
Msa0693890 | Msa0699490 | 0.805100 | 1.571553e-49 | -8.615850e-47 |
Msa0699490 | Msa0741220 | 0.804776 | 1.836562e-49 | -8.615850e-47 |
Msa0699490 | Msa0803250 | 0.804798 | 1.817354e-49 | -8.615850e-47 |
Msa0699490 | Msa0829300 | 0.803945 | 2.736116e-49 | -8.615850e-47 |
Msa0699490 | Msa0833650 | 0.801280 | 9.699883e-49 | -8.615850e-47 |
Msa0699490 | Msa0835490 | 0.807011 | 6.226168e-50 | -8.615850e-47 |
Msa0699490 | Msa0967870 | 0.821780 | 3.365760e-53 | -8.615850e-47 |
Msa0699490 | Msa1021590 | 0.805550 | 1.264618e-49 | -8.615850e-47 |
Msa0699490 | Msa1044680 | 0.809267 | 2.059098e-50 | -8.615850e-47 |
Msa0699490 | Msa1096960 | 0.832132 | 1.125572e-55 | -8.615850e-47 |
Msa0699490 | Msa1105640 | 0.811284 | 7.562507e-51 | -8.615850e-47 |
Msa0699490 | Msa1140220 | 0.803211 | 3.884904e-49 | -8.615850e-47 |
Msa0699490 | Msa1148960 | 0.800537 | 1.375549e-48 | -8.615850e-47 |
Msa0699490 | Msa1265650 | 0.833121 | 6.397454e-56 | -8.615850e-47 |
Msa0699490 | Msa1297230 | 0.811175 | 7.983607e-51 | -8.615850e-47 |
Msa0699490 | Msa1303560 | 0.816796 | 4.596455e-52 | -8.615850e-47 |
Msa0699490 | Msa1303650 | 0.818014 | 2.445219e-52 | -8.615850e-47 |
Msa0699490 | Msa1343430 | 0.823877 | 1.093196e-53 | -8.615850e-47 |
Msa0699490 | Msa1372040 | 0.800660 | 1.298331e-48 | -8.615850e-47 |
Msa0699490 | Msa1440960 | 0.803862 | 2.847291e-49 | -8.615850e-47 |
Msa0225100 | Msa0699490 | 0.803603 | 3.222368e-49 | -8.615850e-47 |
Msa0225860 | Msa0699490 | 0.802634 | 5.111751e-49 | -8.615850e-47 |
Msa0231200 | Msa0699490 | 0.800666 | 1.294797e-48 | -8.615850e-47 |
Msa0436910 | Msa0699490 | 0.832817 | 7.614895e-56 | -8.615850e-47 |
Msa0244640 | Msa0699490 | 0.814507 | 1.487263e-51 | -8.615850e-47 |
Msa0266180 | Msa0699490 | 0.801650 | 8.145058e-49 | -8.615850e-47 |
Msa0283330 | Msa0699490 | 0.814481 | 1.507088e-51 | -8.615850e-47 |
Msa0287740 | Msa0699490 | 0.823125 | 1.638609e-53 | -8.615850e-47 |
Msa0323270 | Msa0699490 | 0.802750 | 4.836523e-49 | -8.615850e-47 |
Msa0519750 | Msa0699490 | 0.816890 | 4.378974e-52 | -8.615850e-47 |
Msa0519830 | Msa0699490 | 0.827522 | 1.493158e-54 | -8.615850e-47 |
Msa0528570 | Msa0699490 | 0.808994 | 2.355479e-50 | -8.615850e-47 |
Msa0530780 | Msa0699490 | 0.807140 | 5.846998e-50 | -8.615850e-47 |
Msa0557460 | Msa0699490 | 0.815974 | 7.021864e-52 | -8.615850e-47 |
Msa0562290 | Msa0699490 | 0.894077 | 3.459185e-75 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0699490 | MtrunA17_Chr8g0375391 | 74.820 | 278 | 16 | 3 | 1 | 224 | 1 | 278 | 4.03e-142 | 398 |
Msa0699490 | MtrunA17_Chr3g0109931 | 36.979 | 192 | 92 | 6 | 50 | 224 | 21 | 200 | 4.92e-30 | 110 |
Msa0699490 | MtrunA17_Chr7g0236031 | 30.973 | 226 | 125 | 8 | 5 | 224 | 106 | 306 | 8.17e-17 | 77.4 |
Msa0699490 | MtrunA17_Chr8g0340041 | 38.384 | 99 | 51 | 2 | 129 | 224 | 209 | 300 | 1.54e-13 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0699490 | AT2G01990.2 | 47.541 | 244 | 78 | 8 | 21 | 224 | 11 | 244 | 3.37e-59 | 187 |
Msa0699490 | AT1G14630.1 | 49.569 | 232 | 88 | 7 | 13 | 224 | 4 | 226 | 2.56e-58 | 184 |
Msa0699490 | AT2G01990.1 | 50.725 | 207 | 60 | 6 | 50 | 224 | 17 | 213 | 3.24e-56 | 178 |
Msa0699490 | AT5G48720.2 | 40.566 | 106 | 53 | 3 | 123 | 224 | 201 | 300 | 1.69e-15 | 74.3 |
Msa0699490 | AT5G48720.4 | 40.566 | 106 | 53 | 3 | 123 | 224 | 201 | 300 | 1.69e-15 | 74.3 |
Msa0699490 | AT5G48720.1 | 45.679 | 81 | 38 | 2 | 144 | 224 | 192 | 266 | 2.10e-15 | 73.6 |
Msa0699490 | AT5G48720.3 | 45.679 | 81 | 38 | 2 | 144 | 224 | 192 | 266 | 2.10e-15 | 73.6 |
Find 65 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCACAAGGTCCAGGCCTTTC+AGG | 0.243748 | 4_4:+70098166 | Msa0699490:CDS |
TCACCAACTGGATGCCTTAC+TGG | 0.271694 | 4_4:-70098118 | None:intergenic |
CCACTGGTTGGTGCCATATA+GGG | 0.272649 | 4_4:-70097178 | None:intergenic |
TCTGGAATTTCAACCCTATA+TGG | 0.295231 | 4_4:+70097165 | Msa0699490:CDS |
TTGAATGAGTTTAGTATAGT+TGG | 0.332190 | 4_4:-70096559 | None:intergenic |
CTATGGTTCTTCCCTAGGTT+GGG | 0.351214 | 4_4:+70096714 | Msa0699490:CDS |
ATATAAAAGTGAATGTTTCT+TGG | 0.352532 | 4_4:-70096506 | None:intergenic |
TCCACTGGTTGGTGCCATAT+AGG | 0.356387 | 4_4:-70097179 | None:intergenic |
CTTGAGTGTGGATTCTAGTA+AGG | 0.359570 | 4_4:-70098204 | None:intergenic |
TATAAAAGTGAATGTTTCTT+GGG | 0.359705 | 4_4:-70096505 | None:intergenic |
GGATGCCTTACTGGCCTTGT+TGG | 0.361970 | 4_4:-70098109 | None:intergenic |
GGTGATGAGAAAGAAGAAAA+AGG | 0.363465 | 4_4:+70097976 | Msa0699490:CDS |
ACATGAAAACAAAGCAAATC+AGG | 0.370570 | 4_4:-70098356 | None:intergenic |
GGTTGGGATTATCACAATCT+TGG | 0.380286 | 4_4:+70096730 | Msa0699490:CDS |
CAAGAGTCTGATTTCTCAAC+TGG | 0.388114 | 4_4:+70096931 | Msa0699490:CDS |
GTCTATTTATGTACAAGTTA+TGG | 0.405893 | 4_4:-70096609 | None:intergenic |
GCTATGGTTCTTCCCTAGGT+TGG | 0.416564 | 4_4:+70096713 | Msa0699490:CDS |
CCACCACTGCTTTGCCTGAA+AGG | 0.422228 | 4_4:-70098180 | None:intergenic |
TTCGATCTTTACAATTTAGC+AGG | 0.422270 | 4_4:-70098379 | None:intergenic |
ACATCACCTTCTTCTCCTCC+TGG | 0.426500 | 4_4:-70098049 | None:intergenic |
GTACTGTGAATGTTAGCCTT+TGG | 0.428209 | 4_4:-70098257 | None:intergenic |
TGGTTATCTTGAAGATGCTT+TGG | 0.432715 | 4_4:+70096951 | Msa0699490:CDS |
TGCCTTACTGGCCTTGTTGG+AGG | 0.444848 | 4_4:-70098106 | None:intergenic |
CTCAGCTATGGTTCTTCCCT+AGG | 0.445329 | 4_4:+70096709 | Msa0699490:CDS |
CCTGGCTTCACTAATGCAAA+TGG | 0.448137 | 4_4:-70098031 | None:intergenic |
TACCTTATCAAAATCATCAA+TGG | 0.460583 | 4_4:-70097043 | None:intergenic |
GAAGATGCTTTGGTTGAGTT+CGG | 0.464739 | 4_4:+70096961 | Msa0699490:CDS |
TGCCTCCAACAAGGCCAGTA+AGG | 0.471163 | 4_4:+70098104 | Msa0699490:CDS |
ACTGCTTTGCCTGAAAGGCC+TGG | 0.473365 | 4_4:-70098175 | None:intergenic |
TGCGTATCTGCACAAGGTCC+AGG | 0.484327 | 4_4:+70098157 | Msa0699490:CDS |
GATCAGATAGAAAGGATTTG+TGG | 0.485973 | 4_4:+70097218 | Msa0699490:CDS |
GTCAATGCAGGCCAAAGATT+AGG | 0.486637 | 4_4:-70096531 | None:intergenic |
GTGAAGCCAGGAGGAGAAGA+AGG | 0.488620 | 4_4:+70098043 | Msa0699490:CDS |
TGAGGCTATTAGTATAAGCT+AGG | 0.491943 | 4_4:-70096690 | None:intergenic |
CGACATGCAAAGTCACCAAC+TGG | 0.501594 | 4_4:-70098130 | None:intergenic |
TGCCTCTTCTTCCTTGAGTG+TGG | 0.502866 | 4_4:-70098216 | None:intergenic |
CCATTTGCATTAGTGAAGCC+AGG | 0.517544 | 4_4:+70098031 | Msa0699490:CDS |
ACTGCATGGATCAGATAGAA+AGG | 0.538926 | 4_4:+70097210 | Msa0699490:CDS |
GATTGTGATAATCCCAACCT+AGG | 0.542350 | 4_4:-70096726 | None:intergenic |
CCTTTCAGGCAAAGCAGTGG+TGG | 0.557492 | 4_4:+70098180 | Msa0699490:CDS |
TTGAGTGTGGATTCTAGTAA+GGG | 0.559111 | 4_4:-70098203 | None:intergenic |
TAGTTGGAGTCAGTCAATGC+AGG | 0.570897 | 4_4:-70096543 | None:intergenic |
AGTGGAGAATTTCTACTGCA+TGG | 0.572678 | 4_4:+70097196 | Msa0699490:CDS |
CCCTATATGGCACCAACCAG+TGG | 0.576336 | 4_4:+70097178 | Msa0699490:CDS |
ATCACTATTATCAGAACCAA+AGG | 0.578340 | 4_4:+70098241 | Msa0699490:CDS |
ATCCACACTCAAGGAAGAAG+AGG | 0.597837 | 4_4:+70098214 | Msa0699490:CDS |
CATTGAATGACATAAATGAA+AGG | 0.598530 | 4_4:+70098074 | Msa0699490:CDS |
ATGCAGTAGAAATTCTCCAC+TGG | 0.600169 | 4_4:-70097194 | None:intergenic |
GGACCTTGTGCAGATACGCA+TGG | 0.608397 | 4_4:-70098154 | None:intergenic |
CAGTTGGTGACTTTGCATGT+CGG | 0.613753 | 4_4:+70098131 | Msa0699490:CDS |
TTTGGTTCTGATAATAGTGA+TGG | 0.613771 | 4_4:-70098239 | None:intergenic |
CGGCCATGCGTATCTGCACA+AGG | 0.617785 | 4_4:+70098151 | Msa0699490:CDS |
ATTGTGATAATCCCAACCTA+GGG | 0.619431 | 4_4:-70096725 | None:intergenic |
TATACTAATAGCCTCAGCTA+TGG | 0.624938 | 4_4:+70096697 | Msa0699490:CDS |
AGTAGAAATTCTCCACTGGT+TGG | 0.629919 | 4_4:-70097190 | None:intergenic |
GGATCTTAATGCCTCCAACA+AGG | 0.630736 | 4_4:+70098095 | Msa0699490:CDS |
GAGGCTATTAGTATAAGCTA+GGG | 0.637394 | 4_4:-70096689 | None:intergenic |
TAGTACTACTACTAGTGATG+AGG | 0.645618 | 4_4:+70097955 | Msa0699490:CDS |
CTTACTAGAATCCACACTCA+AGG | 0.649499 | 4_4:+70098205 | Msa0699490:CDS |
AAGGACAACAACAACAAGAG+TGG | 0.654506 | 4_4:+70098003 | Msa0699490:CDS |
AGGCCTTTCAGGCAAAGCAG+TGG | 0.658996 | 4_4:+70098177 | Msa0699490:CDS |
AGGCCAGTAAGGCATCCAGT+TGG | 0.681142 | 4_4:+70098115 | Msa0699490:CDS |
GAAACTATATTGTATACACA+TGG | 0.690384 | 4_4:-70098449 | None:intergenic |
CTAGGGAAGAACCATAGCTG+AGG | 0.694216 | 4_4:-70096708 | None:intergenic |
TTTGCATTAGTGAAGCCAGG+AGG | 0.731178 | 4_4:+70098034 | Msa0699490:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATTAATGTAGTAAAATA+CGG | + | chr4_4:70097793-70097812 | Msa0699490:intron | 10.0% |
!! | AAAACTATAAATATATCATA+TGG | + | chr4_4:70097901-70097920 | Msa0699490:intron | 10.0% |
!! | TATATTAATGTAGTAAAATA+CGG | + | chr4_4:70097793-70097812 | Msa0699490:intron | 10.0% |
!! | AAAACTATAAATATATCATA+TGG | + | chr4_4:70097901-70097920 | Msa0699490:intron | 10.0% |
!! | TGATATTGAATTATATGATA+TGG | + | chr4_4:70096873-70096892 | Msa0699490:intron | 15.0% |
!! | AATTTCAAACTTAAAATGAA+AGG | - | chr4_4:70097095-70097114 | None:intergenic | 15.0% |
!! | AAATCAAAAGAAAAGAATAA+AGG | + | chr4_4:70097402-70097421 | Msa0699490:intron | 15.0% |
!! | TTTATATACTCTATTACATA+TGG | + | chr4_4:70097729-70097748 | Msa0699490:intron | 15.0% |
!! | TGATATTGAATTATATGATA+TGG | + | chr4_4:70096873-70096892 | Msa0699490:intron | 15.0% |
!! | AATTTCAAACTTAAAATGAA+AGG | - | chr4_4:70097095-70097114 | None:intergenic | 15.0% |
!! | AAATCAAAAGAAAAGAATAA+AGG | + | chr4_4:70097402-70097421 | Msa0699490:intron | 15.0% |
!! | TTTATATACTCTATTACATA+TGG | + | chr4_4:70097729-70097748 | Msa0699490:intron | 15.0% |
!! | TATAAAAGTGAATGTTTCTT+GGG | - | chr4_4:70096508-70096527 | None:intergenic | 20.0% |
!! | ATATAAAAGTGAATGTTTCT+TGG | - | chr4_4:70096509-70096528 | None:intergenic | 20.0% |
!!! | CTTTTATATATCCTAATCTT+TGG | + | chr4_4:70096520-70096539 | Msa0699490:five_prime_UTR | 20.0% |
!!! | AAGAAAATAGAAAAAGCATA+TGG | - | chr4_4:70096589-70096608 | None:intergenic | 20.0% |
!! | ATTATATGATATGGTAGTTA+TGG | + | chr4_4:70096882-70096901 | Msa0699490:intron | 20.0% |
!! | TATGTAACTATATATAGTTC+TGG | + | chr4_4:70097147-70097166 | Msa0699490:intron | 20.0% |
!! | AATTGATTGAGAATTGAAAA+AGG | + | chr4_4:70097370-70097389 | Msa0699490:intron | 20.0% |
!!! | TCTTTTCTTTTGATTTCTTT+GGG | - | chr4_4:70097398-70097417 | None:intergenic | 20.0% |
!!! | TTCTTTTCTTTTGATTTCTT+TGG | - | chr4_4:70097399-70097418 | None:intergenic | 20.0% |
!!! | TATATAAAAGTATACCAAGT+GGG | - | chr4_4:70097717-70097736 | None:intergenic | 20.0% |
!! | TATAAAAGTGAATGTTTCTT+GGG | - | chr4_4:70096508-70096527 | None:intergenic | 20.0% |
!! | ATATAAAAGTGAATGTTTCT+TGG | - | chr4_4:70096509-70096528 | None:intergenic | 20.0% |
!!! | CTTTTATATATCCTAATCTT+TGG | + | chr4_4:70096520-70096539 | Msa0699490:five_prime_UTR | 20.0% |
!!! | AAGAAAATAGAAAAAGCATA+TGG | - | chr4_4:70096589-70096608 | None:intergenic | 20.0% |
!! | ATTATATGATATGGTAGTTA+TGG | + | chr4_4:70096882-70096901 | Msa0699490:intron | 20.0% |
!! | TATGTAACTATATATAGTTC+TGG | + | chr4_4:70097147-70097166 | Msa0699490:intron | 20.0% |
!! | AATTGATTGAGAATTGAAAA+AGG | + | chr4_4:70097370-70097389 | Msa0699490:intron | 20.0% |
!!! | TCTTTTCTTTTGATTTCTTT+GGG | - | chr4_4:70097398-70097417 | None:intergenic | 20.0% |
!!! | TTCTTTTCTTTTGATTTCTT+TGG | - | chr4_4:70097399-70097418 | None:intergenic | 20.0% |
!!! | TATATAAAAGTATACCAAGT+GGG | - | chr4_4:70097717-70097736 | None:intergenic | 20.0% |
! | TTGAATGAGTTTAGTATAGT+TGG | - | chr4_4:70096562-70096581 | None:intergenic | 25.0% |
! | GTCTATTTATGTACAAGTTA+TGG | - | chr4_4:70096612-70096631 | None:intergenic | 25.0% |
!!! | TTCCATTGATGATTTTGATA+AGG | + | chr4_4:70097041-70097060 | Msa0699490:CDS | 25.0% |
! | TACCTTATCAAAATCATCAA+TGG | - | chr4_4:70097046-70097065 | None:intergenic | 25.0% |
!!! | TTTGAAATTCTTGTTGTTCT+TGG | + | chr4_4:70097106-70097125 | Msa0699490:intron | 25.0% |
! | TAATTCTTTGTATGAAGATG+AGG | - | chr4_4:70097659-70097678 | None:intergenic | 25.0% |
!! | ATATAAAAGTATACCAAGTG+GGG | - | chr4_4:70097716-70097735 | None:intergenic | 25.0% |
!! | GTATATAAAAGTATACCAAG+TGG | - | chr4_4:70097718-70097737 | None:intergenic | 25.0% |
! | CATTGAATGACATAAATGAA+AGG | + | chr4_4:70098074-70098093 | Msa0699490:CDS | 25.0% |
!!! | TTTTGTTATCATGCATGTTA+TGG | + | chr4_4:70098292-70098311 | Msa0699490:three_prime_UTR | 25.0% |
! | GAAACTATATTGTATACACA+TGG | - | chr4_4:70098452-70098471 | None:intergenic | 25.0% |
! | TTGAATGAGTTTAGTATAGT+TGG | - | chr4_4:70096562-70096581 | None:intergenic | 25.0% |
! | GTCTATTTATGTACAAGTTA+TGG | - | chr4_4:70096612-70096631 | None:intergenic | 25.0% |
!!! | TTCCATTGATGATTTTGATA+AGG | + | chr4_4:70097041-70097060 | Msa0699490:CDS | 25.0% |
! | TACCTTATCAAAATCATCAA+TGG | - | chr4_4:70097046-70097065 | None:intergenic | 25.0% |
!!! | TTTGAAATTCTTGTTGTTCT+TGG | + | chr4_4:70097106-70097125 | Msa0699490:intron | 25.0% |
! | TAATTCTTTGTATGAAGATG+AGG | - | chr4_4:70097659-70097678 | None:intergenic | 25.0% |
!! | ATATAAAAGTATACCAAGTG+GGG | - | chr4_4:70097716-70097735 | None:intergenic | 25.0% |
!! | GTATATAAAAGTATACCAAG+TGG | - | chr4_4:70097718-70097737 | None:intergenic | 25.0% |
! | CATTGAATGACATAAATGAA+AGG | + | chr4_4:70098074-70098093 | Msa0699490:CDS | 25.0% |
!!! | TTTTGTTATCATGCATGTTA+TGG | + | chr4_4:70098292-70098311 | Msa0699490:three_prime_UTR | 25.0% |
! | GAAACTATATTGTATACACA+TGG | - | chr4_4:70098452-70098471 | None:intergenic | 25.0% |
! | ATATGACGTGATGATCATTT+TGG | + | chr4_4:70097291-70097310 | Msa0699490:intron | 30.0% |
!!! | GATGATCATTTTGGTTCAAA+AGG | + | chr4_4:70097300-70097319 | Msa0699490:intron | 30.0% |
ATGAACATATAAGCACATTG+AGG | + | chr4_4:70097545-70097564 | Msa0699490:intron | 30.0% | |
!!! | CTGGTTTTGGATATTGTTAA+TGG | - | chr4_4:70097685-70097704 | None:intergenic | 30.0% |
!! | TTTGGTTCTGATAATAGTGA+TGG | - | chr4_4:70098242-70098261 | None:intergenic | 30.0% |
ATCACTATTATCAGAACCAA+AGG | + | chr4_4:70098241-70098260 | Msa0699490:CDS | 30.0% | |
ACATGAAAACAAAGCAAATC+AGG | - | chr4_4:70098359-70098378 | None:intergenic | 30.0% | |
TTCGATCTTTACAATTTAGC+AGG | - | chr4_4:70098382-70098401 | None:intergenic | 30.0% | |
! | ATATGACGTGATGATCATTT+TGG | + | chr4_4:70097291-70097310 | Msa0699490:intron | 30.0% |
!!! | GATGATCATTTTGGTTCAAA+AGG | + | chr4_4:70097300-70097319 | Msa0699490:intron | 30.0% |
ATGAACATATAAGCACATTG+AGG | + | chr4_4:70097545-70097564 | Msa0699490:intron | 30.0% | |
!!! | CTGGTTTTGGATATTGTTAA+TGG | - | chr4_4:70097685-70097704 | None:intergenic | 30.0% |
!! | TTTGGTTCTGATAATAGTGA+TGG | - | chr4_4:70098242-70098261 | None:intergenic | 30.0% |
ATCACTATTATCAGAACCAA+AGG | + | chr4_4:70098241-70098260 | Msa0699490:CDS | 30.0% | |
ACATGAAAACAAAGCAAATC+AGG | - | chr4_4:70098359-70098378 | None:intergenic | 30.0% | |
TTCGATCTTTACAATTTAGC+AGG | - | chr4_4:70098382-70098401 | None:intergenic | 30.0% | |
TGACAAAAAATGATGAGGAG+GGG | - | chr4_4:70096634-70096653 | None:intergenic | 35.0% | |
GTGACAAAAAATGATGAGGA+GGG | - | chr4_4:70096635-70096654 | None:intergenic | 35.0% | |
TGTGACAAAAAATGATGAGG+AGG | - | chr4_4:70096636-70096655 | None:intergenic | 35.0% | |
GTGTGTGACAAAAAATGATG+AGG | - | chr4_4:70096639-70096658 | None:intergenic | 35.0% | |
GAGGCTATTAGTATAAGCTA+GGG | - | chr4_4:70096692-70096711 | None:intergenic | 35.0% | |
TGAGGCTATTAGTATAAGCT+AGG | - | chr4_4:70096693-70096712 | None:intergenic | 35.0% | |
TATACTAATAGCCTCAGCTA+TGG | + | chr4_4:70096697-70096716 | Msa0699490:CDS | 35.0% | |
ATTGTGATAATCCCAACCTA+GGG | - | chr4_4:70096728-70096747 | None:intergenic | 35.0% | |
TGGTTATCTTGAAGATGCTT+TGG | + | chr4_4:70096951-70096970 | Msa0699490:CDS | 35.0% | |
! | TCTGGAATTTCAACCCTATA+TGG | + | chr4_4:70097165-70097184 | Msa0699490:CDS | 35.0% |
GATCAGATAGAAAGGATTTG+TGG | + | chr4_4:70097218-70097237 | Msa0699490:CDS | 35.0% | |
! | GAAAGGATTTGTGGATTTTC+AGG | + | chr4_4:70097227-70097246 | Msa0699490:CDS | 35.0% |
! | GTGTCTTCTAGAAGAATGTT+TGG | - | chr4_4:70097589-70097608 | None:intergenic | 35.0% |
TATGAAGATGAGGAGGAATT+TGG | - | chr4_4:70097649-70097668 | None:intergenic | 35.0% | |
TTCTTTGTATGAAGATGAGG+AGG | - | chr4_4:70097656-70097675 | None:intergenic | 35.0% | |
TAAAATACGGACCACAATTG+CGG | + | chr4_4:70097806-70097825 | Msa0699490:intron | 35.0% | |
TAGTACTACTACTAGTGATG+AGG | + | chr4_4:70097955-70097974 | Msa0699490:CDS | 35.0% | |
GGTGATGAGAAAGAAGAAAA+AGG | + | chr4_4:70097976-70097995 | Msa0699490:CDS | 35.0% | |
GATGAGAAAGAAGAAAAAGG+TGG | + | chr4_4:70097979-70097998 | Msa0699490:CDS | 35.0% | |
GAAAGAAGAAAAAGGTGGTA+AGG | + | chr4_4:70097984-70098003 | Msa0699490:CDS | 35.0% | |
TTGAGTGTGGATTCTAGTAA+GGG | - | chr4_4:70098206-70098225 | None:intergenic | 35.0% | |
TGACAAAAAATGATGAGGAG+GGG | - | chr4_4:70096634-70096653 | None:intergenic | 35.0% | |
GTGACAAAAAATGATGAGGA+GGG | - | chr4_4:70096635-70096654 | None:intergenic | 35.0% | |
TGTGACAAAAAATGATGAGG+AGG | - | chr4_4:70096636-70096655 | None:intergenic | 35.0% | |
GTGTGTGACAAAAAATGATG+AGG | - | chr4_4:70096639-70096658 | None:intergenic | 35.0% | |
GAGGCTATTAGTATAAGCTA+GGG | - | chr4_4:70096692-70096711 | None:intergenic | 35.0% | |
TGAGGCTATTAGTATAAGCT+AGG | - | chr4_4:70096693-70096712 | None:intergenic | 35.0% | |
TATACTAATAGCCTCAGCTA+TGG | + | chr4_4:70096697-70096716 | Msa0699490:CDS | 35.0% | |
ATTGTGATAATCCCAACCTA+GGG | - | chr4_4:70096728-70096747 | None:intergenic | 35.0% | |
TGGTTATCTTGAAGATGCTT+TGG | + | chr4_4:70096951-70096970 | Msa0699490:CDS | 35.0% | |
! | TCTGGAATTTCAACCCTATA+TGG | + | chr4_4:70097165-70097184 | Msa0699490:CDS | 35.0% |
GATCAGATAGAAAGGATTTG+TGG | + | chr4_4:70097218-70097237 | Msa0699490:CDS | 35.0% | |
! | GAAAGGATTTGTGGATTTTC+AGG | + | chr4_4:70097227-70097246 | Msa0699490:CDS | 35.0% |
! | GTGTCTTCTAGAAGAATGTT+TGG | - | chr4_4:70097589-70097608 | None:intergenic | 35.0% |
TATGAAGATGAGGAGGAATT+TGG | - | chr4_4:70097649-70097668 | None:intergenic | 35.0% | |
TTCTTTGTATGAAGATGAGG+AGG | - | chr4_4:70097656-70097675 | None:intergenic | 35.0% | |
TAAAATACGGACCACAATTG+CGG | + | chr4_4:70097806-70097825 | Msa0699490:intron | 35.0% | |
TAGTACTACTACTAGTGATG+AGG | + | chr4_4:70097955-70097974 | Msa0699490:CDS | 35.0% | |
GGTGATGAGAAAGAAGAAAA+AGG | + | chr4_4:70097976-70097995 | Msa0699490:CDS | 35.0% | |
GATGAGAAAGAAGAAAAAGG+TGG | + | chr4_4:70097979-70097998 | Msa0699490:CDS | 35.0% | |
GAAAGAAGAAAAAGGTGGTA+AGG | + | chr4_4:70097984-70098003 | Msa0699490:CDS | 35.0% | |
TTGAGTGTGGATTCTAGTAA+GGG | - | chr4_4:70098206-70098225 | None:intergenic | 35.0% | |
GATTGTGATAATCCCAACCT+AGG | - | chr4_4:70096729-70096748 | None:intergenic | 40.0% | |
GGTTGGGATTATCACAATCT+TGG | + | chr4_4:70096730-70096749 | Msa0699490:CDS | 40.0% | |
CAAGAGTCTGATTTCTCAAC+TGG | + | chr4_4:70096931-70096950 | Msa0699490:CDS | 40.0% | |
GAAGATGCTTTGGTTGAGTT+CGG | + | chr4_4:70096961-70096980 | Msa0699490:CDS | 40.0% | |
AGTAGAAATTCTCCACTGGT+TGG | - | chr4_4:70097193-70097212 | None:intergenic | 40.0% | |
ATGCAGTAGAAATTCTCCAC+TGG | - | chr4_4:70097197-70097216 | None:intergenic | 40.0% | |
AGTGGAGAATTTCTACTGCA+TGG | + | chr4_4:70097196-70097215 | Msa0699490:CDS | 40.0% | |
ACTGCATGGATCAGATAGAA+AGG | + | chr4_4:70097210-70097229 | Msa0699490:CDS | 40.0% | |
! | ATGGTTTGCAACTGCAATTG+CGG | - | chr4_4:70097876-70097895 | None:intergenic | 40.0% |
AAGGACAACAACAACAAGAG+TGG | + | chr4_4:70098003-70098022 | Msa0699490:CDS | 40.0% | |
CTTGAGTGTGGATTCTAGTA+AGG | - | chr4_4:70098207-70098226 | None:intergenic | 40.0% | |
CTTACTAGAATCCACACTCA+AGG | + | chr4_4:70098205-70098224 | Msa0699490:CDS | 40.0% | |
!! | GTACTGTGAATGTTAGCCTT+TGG | - | chr4_4:70098260-70098279 | None:intergenic | 40.0% |
GCAAATCAGGCTAAAAAAGC+TGG | - | chr4_4:70098346-70098365 | None:intergenic | 40.0% | |
GATTGTGATAATCCCAACCT+AGG | - | chr4_4:70096729-70096748 | None:intergenic | 40.0% | |
GGTTGGGATTATCACAATCT+TGG | + | chr4_4:70096730-70096749 | Msa0699490:CDS | 40.0% | |
CAAGAGTCTGATTTCTCAAC+TGG | + | chr4_4:70096931-70096950 | Msa0699490:CDS | 40.0% | |
GAAGATGCTTTGGTTGAGTT+CGG | + | chr4_4:70096961-70096980 | Msa0699490:CDS | 40.0% | |
AGTAGAAATTCTCCACTGGT+TGG | - | chr4_4:70097193-70097212 | None:intergenic | 40.0% | |
ATGCAGTAGAAATTCTCCAC+TGG | - | chr4_4:70097197-70097216 | None:intergenic | 40.0% | |
AGTGGAGAATTTCTACTGCA+TGG | + | chr4_4:70097196-70097215 | Msa0699490:CDS | 40.0% | |
ACTGCATGGATCAGATAGAA+AGG | + | chr4_4:70097210-70097229 | Msa0699490:CDS | 40.0% | |
! | ATGGTTTGCAACTGCAATTG+CGG | - | chr4_4:70097876-70097895 | None:intergenic | 40.0% |
AAGGACAACAACAACAAGAG+TGG | + | chr4_4:70098003-70098022 | Msa0699490:CDS | 40.0% | |
CTTGAGTGTGGATTCTAGTA+AGG | - | chr4_4:70098207-70098226 | None:intergenic | 40.0% | |
CTTACTAGAATCCACACTCA+AGG | + | chr4_4:70098205-70098224 | Msa0699490:CDS | 40.0% | |
!! | GTACTGTGAATGTTAGCCTT+TGG | - | chr4_4:70098260-70098279 | None:intergenic | 40.0% |
GCAAATCAGGCTAAAAAAGC+TGG | - | chr4_4:70098346-70098365 | None:intergenic | 40.0% | |
GTCAATGCAGGCCAAAGATT+AGG | - | chr4_4:70096534-70096553 | None:intergenic | 45.0% | |
TAGTTGGAGTCAGTCAATGC+AGG | - | chr4_4:70096546-70096565 | None:intergenic | 45.0% | |
CTATGGTTCTTCCCTAGGTT+GGG | + | chr4_4:70096714-70096733 | Msa0699490:CDS | 45.0% | |
TTGCAGTCACAATTACGCTG+CGG | + | chr4_4:70097765-70097784 | Msa0699490:intron | 45.0% | |
CCTGGCTTCACTAATGCAAA+TGG | - | chr4_4:70098034-70098053 | None:intergenic | 45.0% | |
CCATTTGCATTAGTGAAGCC+AGG | + | chr4_4:70098031-70098050 | Msa0699490:CDS | 45.0% | |
TTTGCATTAGTGAAGCCAGG+AGG | + | chr4_4:70098034-70098053 | Msa0699490:CDS | 45.0% | |
GGATCTTAATGCCTCCAACA+AGG | + | chr4_4:70098095-70098114 | Msa0699490:CDS | 45.0% | |
!! | CAGTTGGTGACTTTGCATGT+CGG | + | chr4_4:70098131-70098150 | Msa0699490:CDS | 45.0% |
ATCCACACTCAAGGAAGAAG+AGG | + | chr4_4:70098214-70098233 | Msa0699490:CDS | 45.0% | |
GTCAATGCAGGCCAAAGATT+AGG | - | chr4_4:70096534-70096553 | None:intergenic | 45.0% | |
TAGTTGGAGTCAGTCAATGC+AGG | - | chr4_4:70096546-70096565 | None:intergenic | 45.0% | |
CTATGGTTCTTCCCTAGGTT+GGG | + | chr4_4:70096714-70096733 | Msa0699490:CDS | 45.0% | |
TTGCAGTCACAATTACGCTG+CGG | + | chr4_4:70097765-70097784 | Msa0699490:intron | 45.0% | |
CCTGGCTTCACTAATGCAAA+TGG | - | chr4_4:70098034-70098053 | None:intergenic | 45.0% | |
CCATTTGCATTAGTGAAGCC+AGG | + | chr4_4:70098031-70098050 | Msa0699490:CDS | 45.0% | |
TTTGCATTAGTGAAGCCAGG+AGG | + | chr4_4:70098034-70098053 | Msa0699490:CDS | 45.0% | |
GGATCTTAATGCCTCCAACA+AGG | + | chr4_4:70098095-70098114 | Msa0699490:CDS | 45.0% | |
!! | CAGTTGGTGACTTTGCATGT+CGG | + | chr4_4:70098131-70098150 | Msa0699490:CDS | 45.0% |
ATCCACACTCAAGGAAGAAG+AGG | + | chr4_4:70098214-70098233 | Msa0699490:CDS | 45.0% | |
!!! | TATTATTTTAATTTACTAAT+TGG | + | chr4_4:70097503-70097522 | Msa0699490:intron | 5.0% |
!!! | ATATTTATAGTTTTAATTTA+TGG | - | chr4_4:70097895-70097914 | None:intergenic | 5.0% |
!! | TATTATAAATTATTAAAAAC+AGG | + | chr4_4:70097929-70097948 | Msa0699490:intron | 5.0% |
!!! | TATTATTTTAATTTACTAAT+TGG | + | chr4_4:70097503-70097522 | Msa0699490:intron | 5.0% |
!!! | ATATTTATAGTTTTAATTTA+TGG | - | chr4_4:70097895-70097914 | None:intergenic | 5.0% |
!! | TATTATAAATTATTAAAAAC+AGG | + | chr4_4:70097929-70097948 | Msa0699490:intron | 5.0% |
CTAGGGAAGAACCATAGCTG+AGG | - | chr4_4:70096711-70096730 | None:intergenic | 50.0% | |
CTCAGCTATGGTTCTTCCCT+AGG | + | chr4_4:70096709-70096728 | Msa0699490:CDS | 50.0% | |
GCTATGGTTCTTCCCTAGGT+TGG | + | chr4_4:70096713-70096732 | Msa0699490:CDS | 50.0% | |
!! | CCACTGGTTGGTGCCATATA+GGG | - | chr4_4:70097181-70097200 | None:intergenic | 50.0% |
!! | TCCACTGGTTGGTGCCATAT+AGG | - | chr4_4:70097182-70097201 | None:intergenic | 50.0% |
GCACATTGCAACCGCAATTG+TGG | - | chr4_4:70097820-70097839 | None:intergenic | 50.0% | |
ACATCACCTTCTTCTCCTCC+TGG | - | chr4_4:70098052-70098071 | None:intergenic | 50.0% | |
TCACCAACTGGATGCCTTAC+TGG | - | chr4_4:70098121-70098140 | None:intergenic | 50.0% | |
CGACATGCAAAGTCACCAAC+TGG | - | chr4_4:70098133-70098152 | None:intergenic | 50.0% | |
TGCCTCTTCTTCCTTGAGTG+TGG | - | chr4_4:70098219-70098238 | None:intergenic | 50.0% | |
CTAGGGAAGAACCATAGCTG+AGG | - | chr4_4:70096711-70096730 | None:intergenic | 50.0% | |
CTCAGCTATGGTTCTTCCCT+AGG | + | chr4_4:70096709-70096728 | Msa0699490:CDS | 50.0% | |
GCTATGGTTCTTCCCTAGGT+TGG | + | chr4_4:70096713-70096732 | Msa0699490:CDS | 50.0% | |
!! | CCACTGGTTGGTGCCATATA+GGG | - | chr4_4:70097181-70097200 | None:intergenic | 50.0% |
!! | TCCACTGGTTGGTGCCATAT+AGG | - | chr4_4:70097182-70097201 | None:intergenic | 50.0% |
GCACATTGCAACCGCAATTG+TGG | - | chr4_4:70097820-70097839 | None:intergenic | 50.0% | |
ACATCACCTTCTTCTCCTCC+TGG | - | chr4_4:70098052-70098071 | None:intergenic | 50.0% | |
TCACCAACTGGATGCCTTAC+TGG | - | chr4_4:70098121-70098140 | None:intergenic | 50.0% | |
CGACATGCAAAGTCACCAAC+TGG | - | chr4_4:70098133-70098152 | None:intergenic | 50.0% | |
TGCCTCTTCTTCCTTGAGTG+TGG | - | chr4_4:70098219-70098238 | None:intergenic | 50.0% | |
CCCTATATGGCACCAACCAG+TGG | + | chr4_4:70097178-70097197 | Msa0699490:CDS | 55.0% | |
!!! | TGGGGTGTCTCTGCTGGTTT+TGG | - | chr4_4:70097698-70097717 | None:intergenic | 55.0% |
GTGAAGCCAGGAGGAGAAGA+AGG | + | chr4_4:70098043-70098062 | Msa0699490:CDS | 55.0% | |
TGCCTCCAACAAGGCCAGTA+AGG | + | chr4_4:70098104-70098123 | Msa0699490:CDS | 55.0% | |
!! | TGCCTTACTGGCCTTGTTGG+AGG | - | chr4_4:70098109-70098128 | None:intergenic | 55.0% |
!! | GGATGCCTTACTGGCCTTGT+TGG | - | chr4_4:70098112-70098131 | None:intergenic | 55.0% |
! | AGGCCAGTAAGGCATCCAGT+TGG | + | chr4_4:70098115-70098134 | Msa0699490:CDS | 55.0% |
GGACCTTGTGCAGATACGCA+TGG | - | chr4_4:70098157-70098176 | None:intergenic | 55.0% | |
TGCGTATCTGCACAAGGTCC+AGG | + | chr4_4:70098157-70098176 | Msa0699490:CDS | 55.0% | |
ACTGCTTTGCCTGAAAGGCC+TGG | - | chr4_4:70098178-70098197 | None:intergenic | 55.0% | |
AGGCCTTTCAGGCAAAGCAG+TGG | + | chr4_4:70098177-70098196 | Msa0699490:CDS | 55.0% | |
CCACCACTGCTTTGCCTGAA+AGG | - | chr4_4:70098183-70098202 | None:intergenic | 55.0% | |
CCTTTCAGGCAAAGCAGTGG+TGG | + | chr4_4:70098180-70098199 | Msa0699490:CDS | 55.0% | |
CCCTATATGGCACCAACCAG+TGG | + | chr4_4:70097178-70097197 | Msa0699490:CDS | 55.0% | |
!!! | TGGGGTGTCTCTGCTGGTTT+TGG | - | chr4_4:70097698-70097717 | None:intergenic | 55.0% |
GTGAAGCCAGGAGGAGAAGA+AGG | + | chr4_4:70098043-70098062 | Msa0699490:CDS | 55.0% | |
TGCCTCCAACAAGGCCAGTA+AGG | + | chr4_4:70098104-70098123 | Msa0699490:CDS | 55.0% | |
!! | TGCCTTACTGGCCTTGTTGG+AGG | - | chr4_4:70098109-70098128 | None:intergenic | 55.0% |
!! | GGATGCCTTACTGGCCTTGT+TGG | - | chr4_4:70098112-70098131 | None:intergenic | 55.0% |
! | AGGCCAGTAAGGCATCCAGT+TGG | + | chr4_4:70098115-70098134 | Msa0699490:CDS | 55.0% |
GGACCTTGTGCAGATACGCA+TGG | - | chr4_4:70098157-70098176 | None:intergenic | 55.0% | |
TGCGTATCTGCACAAGGTCC+AGG | + | chr4_4:70098157-70098176 | Msa0699490:CDS | 55.0% | |
ACTGCTTTGCCTGAAAGGCC+TGG | - | chr4_4:70098178-70098197 | None:intergenic | 55.0% | |
AGGCCTTTCAGGCAAAGCAG+TGG | + | chr4_4:70098177-70098196 | Msa0699490:CDS | 55.0% | |
CCACCACTGCTTTGCCTGAA+AGG | - | chr4_4:70098183-70098202 | None:intergenic | 55.0% | |
CCTTTCAGGCAAAGCAGTGG+TGG | + | chr4_4:70098180-70098199 | Msa0699490:CDS | 55.0% | |
ACCAGCAGAGACACCCCACT+TGG | + | chr4_4:70097700-70097719 | Msa0699490:intron | 60.0% | |
! | ACCAAGTGGGGTGTCTCTGC+TGG | - | chr4_4:70097704-70097723 | None:intergenic | 60.0% |
CGGCCATGCGTATCTGCACA+AGG | + | chr4_4:70098151-70098170 | Msa0699490:CDS | 60.0% | |
GCACAAGGTCCAGGCCTTTC+AGG | + | chr4_4:70098166-70098185 | Msa0699490:CDS | 60.0% | |
ACCAGCAGAGACACCCCACT+TGG | + | chr4_4:70097700-70097719 | Msa0699490:intron | 60.0% | |
! | ACCAAGTGGGGTGTCTCTGC+TGG | - | chr4_4:70097704-70097723 | None:intergenic | 60.0% |
CGGCCATGCGTATCTGCACA+AGG | + | chr4_4:70098151-70098170 | Msa0699490:CDS | 60.0% | |
GCACAAGGTCCAGGCCTTTC+AGG | + | chr4_4:70098166-70098185 | Msa0699490:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 70096497 | 70098504 | 70096497 | ID=Msa0699490;Name=Msa0699490 |
chr4_4 | mRNA | 70096497 | 70098504 | 70096497 | ID=Msa0699490-mRNA-1;Parent=Msa0699490;Name=Msa0699490-mRNA-1;_AED=0.18;_eAED=0.18;_QI=176|0.66|1|1|1|1|4|237|224 |
chr4_4 | exon | 70096497 | 70096781 | 70096497 | ID=Msa0699490-mRNA-1:exon:21177;Parent=Msa0699490-mRNA-1 |
chr4_4 | exon | 70096899 | 70097062 | 70096899 | ID=Msa0699490-mRNA-1:exon:21178;Parent=Msa0699490-mRNA-1 |
chr4_4 | exon | 70097164 | 70097248 | 70097164 | ID=Msa0699490-mRNA-1:exon:21179;Parent=Msa0699490-mRNA-1 |
chr4_4 | exon | 70097951 | 70098504 | 70097951 | ID=Msa0699490-mRNA-1:exon:21180;Parent=Msa0699490-mRNA-1 |
chr4_4 | five_prime_UTR | 70096497 | 70096672 | 70096497 | ID=Msa0699490-mRNA-1:five_prime_utr;Parent=Msa0699490-mRNA-1 |
chr4_4 | CDS | 70096673 | 70096781 | 70096673 | ID=Msa0699490-mRNA-1:cds;Parent=Msa0699490-mRNA-1 |
chr4_4 | CDS | 70096899 | 70097062 | 70096899 | ID=Msa0699490-mRNA-1:cds;Parent=Msa0699490-mRNA-1 |
chr4_4 | CDS | 70097164 | 70097248 | 70097164 | ID=Msa0699490-mRNA-1:cds;Parent=Msa0699490-mRNA-1 |
chr4_4 | CDS | 70097951 | 70098267 | 70097951 | ID=Msa0699490-mRNA-1:cds;Parent=Msa0699490-mRNA-1 |
chr4_4 | three_prime_UTR | 70098268 | 70098504 | 70098268 | ID=Msa0699490-mRNA-1:three_prime_utr;Parent=Msa0699490-mRNA-1 |
Gene Sequence |
Protein sequence |