AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0699490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0699490 MtrunA17_Chr8g0375391 74.820 278 16 3 1 224 1 278 4.03e-142 398
Msa0699490 MtrunA17_Chr3g0109931 36.979 192 92 6 50 224 21 200 4.92e-30 110
Msa0699490 MtrunA17_Chr7g0236031 30.973 226 125 8 5 224 106 306 8.17e-17 77.4
Msa0699490 MtrunA17_Chr8g0340041 38.384 99 51 2 129 224 209 300 1.54e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0699490 AT2G01990.2 47.541 244 78 8 21 224 11 244 3.37e-59 187
Msa0699490 AT1G14630.1 49.569 232 88 7 13 224 4 226 2.56e-58 184
Msa0699490 AT2G01990.1 50.725 207 60 6 50 224 17 213 3.24e-56 178
Msa0699490 AT5G48720.2 40.566 106 53 3 123 224 201 300 1.69e-15 74.3
Msa0699490 AT5G48720.4 40.566 106 53 3 123 224 201 300 1.69e-15 74.3
Msa0699490 AT5G48720.1 45.679 81 38 2 144 224 192 266 2.10e-15 73.6
Msa0699490 AT5G48720.3 45.679 81 38 2 144 224 192 266 2.10e-15 73.6

Find 65 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACAAGGTCCAGGCCTTTC+AGG 0.243748 4_4:+70098166 Msa0699490:CDS
TCACCAACTGGATGCCTTAC+TGG 0.271694 4_4:-70098118 None:intergenic
CCACTGGTTGGTGCCATATA+GGG 0.272649 4_4:-70097178 None:intergenic
TCTGGAATTTCAACCCTATA+TGG 0.295231 4_4:+70097165 Msa0699490:CDS
TTGAATGAGTTTAGTATAGT+TGG 0.332190 4_4:-70096559 None:intergenic
CTATGGTTCTTCCCTAGGTT+GGG 0.351214 4_4:+70096714 Msa0699490:CDS
ATATAAAAGTGAATGTTTCT+TGG 0.352532 4_4:-70096506 None:intergenic
TCCACTGGTTGGTGCCATAT+AGG 0.356387 4_4:-70097179 None:intergenic
CTTGAGTGTGGATTCTAGTA+AGG 0.359570 4_4:-70098204 None:intergenic
TATAAAAGTGAATGTTTCTT+GGG 0.359705 4_4:-70096505 None:intergenic
GGATGCCTTACTGGCCTTGT+TGG 0.361970 4_4:-70098109 None:intergenic
GGTGATGAGAAAGAAGAAAA+AGG 0.363465 4_4:+70097976 Msa0699490:CDS
ACATGAAAACAAAGCAAATC+AGG 0.370570 4_4:-70098356 None:intergenic
GGTTGGGATTATCACAATCT+TGG 0.380286 4_4:+70096730 Msa0699490:CDS
CAAGAGTCTGATTTCTCAAC+TGG 0.388114 4_4:+70096931 Msa0699490:CDS
GTCTATTTATGTACAAGTTA+TGG 0.405893 4_4:-70096609 None:intergenic
GCTATGGTTCTTCCCTAGGT+TGG 0.416564 4_4:+70096713 Msa0699490:CDS
CCACCACTGCTTTGCCTGAA+AGG 0.422228 4_4:-70098180 None:intergenic
TTCGATCTTTACAATTTAGC+AGG 0.422270 4_4:-70098379 None:intergenic
ACATCACCTTCTTCTCCTCC+TGG 0.426500 4_4:-70098049 None:intergenic
GTACTGTGAATGTTAGCCTT+TGG 0.428209 4_4:-70098257 None:intergenic
TGGTTATCTTGAAGATGCTT+TGG 0.432715 4_4:+70096951 Msa0699490:CDS
TGCCTTACTGGCCTTGTTGG+AGG 0.444848 4_4:-70098106 None:intergenic
CTCAGCTATGGTTCTTCCCT+AGG 0.445329 4_4:+70096709 Msa0699490:CDS
CCTGGCTTCACTAATGCAAA+TGG 0.448137 4_4:-70098031 None:intergenic
TACCTTATCAAAATCATCAA+TGG 0.460583 4_4:-70097043 None:intergenic
GAAGATGCTTTGGTTGAGTT+CGG 0.464739 4_4:+70096961 Msa0699490:CDS
TGCCTCCAACAAGGCCAGTA+AGG 0.471163 4_4:+70098104 Msa0699490:CDS
ACTGCTTTGCCTGAAAGGCC+TGG 0.473365 4_4:-70098175 None:intergenic
TGCGTATCTGCACAAGGTCC+AGG 0.484327 4_4:+70098157 Msa0699490:CDS
GATCAGATAGAAAGGATTTG+TGG 0.485973 4_4:+70097218 Msa0699490:CDS
GTCAATGCAGGCCAAAGATT+AGG 0.486637 4_4:-70096531 None:intergenic
GTGAAGCCAGGAGGAGAAGA+AGG 0.488620 4_4:+70098043 Msa0699490:CDS
TGAGGCTATTAGTATAAGCT+AGG 0.491943 4_4:-70096690 None:intergenic
CGACATGCAAAGTCACCAAC+TGG 0.501594 4_4:-70098130 None:intergenic
TGCCTCTTCTTCCTTGAGTG+TGG 0.502866 4_4:-70098216 None:intergenic
CCATTTGCATTAGTGAAGCC+AGG 0.517544 4_4:+70098031 Msa0699490:CDS
ACTGCATGGATCAGATAGAA+AGG 0.538926 4_4:+70097210 Msa0699490:CDS
GATTGTGATAATCCCAACCT+AGG 0.542350 4_4:-70096726 None:intergenic
CCTTTCAGGCAAAGCAGTGG+TGG 0.557492 4_4:+70098180 Msa0699490:CDS
TTGAGTGTGGATTCTAGTAA+GGG 0.559111 4_4:-70098203 None:intergenic
TAGTTGGAGTCAGTCAATGC+AGG 0.570897 4_4:-70096543 None:intergenic
AGTGGAGAATTTCTACTGCA+TGG 0.572678 4_4:+70097196 Msa0699490:CDS
CCCTATATGGCACCAACCAG+TGG 0.576336 4_4:+70097178 Msa0699490:CDS
ATCACTATTATCAGAACCAA+AGG 0.578340 4_4:+70098241 Msa0699490:CDS
ATCCACACTCAAGGAAGAAG+AGG 0.597837 4_4:+70098214 Msa0699490:CDS
CATTGAATGACATAAATGAA+AGG 0.598530 4_4:+70098074 Msa0699490:CDS
ATGCAGTAGAAATTCTCCAC+TGG 0.600169 4_4:-70097194 None:intergenic
GGACCTTGTGCAGATACGCA+TGG 0.608397 4_4:-70098154 None:intergenic
CAGTTGGTGACTTTGCATGT+CGG 0.613753 4_4:+70098131 Msa0699490:CDS
TTTGGTTCTGATAATAGTGA+TGG 0.613771 4_4:-70098239 None:intergenic
CGGCCATGCGTATCTGCACA+AGG 0.617785 4_4:+70098151 Msa0699490:CDS
ATTGTGATAATCCCAACCTA+GGG 0.619431 4_4:-70096725 None:intergenic
TATACTAATAGCCTCAGCTA+TGG 0.624938 4_4:+70096697 Msa0699490:CDS
AGTAGAAATTCTCCACTGGT+TGG 0.629919 4_4:-70097190 None:intergenic
GGATCTTAATGCCTCCAACA+AGG 0.630736 4_4:+70098095 Msa0699490:CDS
GAGGCTATTAGTATAAGCTA+GGG 0.637394 4_4:-70096689 None:intergenic
TAGTACTACTACTAGTGATG+AGG 0.645618 4_4:+70097955 Msa0699490:CDS
CTTACTAGAATCCACACTCA+AGG 0.649499 4_4:+70098205 Msa0699490:CDS
AAGGACAACAACAACAAGAG+TGG 0.654506 4_4:+70098003 Msa0699490:CDS
AGGCCTTTCAGGCAAAGCAG+TGG 0.658996 4_4:+70098177 Msa0699490:CDS
AGGCCAGTAAGGCATCCAGT+TGG 0.681142 4_4:+70098115 Msa0699490:CDS
GAAACTATATTGTATACACA+TGG 0.690384 4_4:-70098449 None:intergenic
CTAGGGAAGAACCATAGCTG+AGG 0.694216 4_4:-70096708 None:intergenic
TTTGCATTAGTGAAGCCAGG+AGG 0.731178 4_4:+70098034 Msa0699490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTAATGTAGTAAAATA+CGG + chr4_4:70097793-70097812 Msa0699490:intron 10.0%
!! AAAACTATAAATATATCATA+TGG + chr4_4:70097901-70097920 Msa0699490:intron 10.0%
!! TATATTAATGTAGTAAAATA+CGG + chr4_4:70097793-70097812 Msa0699490:intron 10.0%
!! AAAACTATAAATATATCATA+TGG + chr4_4:70097901-70097920 Msa0699490:intron 10.0%
!! TGATATTGAATTATATGATA+TGG + chr4_4:70096873-70096892 Msa0699490:intron 15.0%
!! AATTTCAAACTTAAAATGAA+AGG - chr4_4:70097095-70097114 None:intergenic 15.0%
!! AAATCAAAAGAAAAGAATAA+AGG + chr4_4:70097402-70097421 Msa0699490:intron 15.0%
!! TTTATATACTCTATTACATA+TGG + chr4_4:70097729-70097748 Msa0699490:intron 15.0%
!! TGATATTGAATTATATGATA+TGG + chr4_4:70096873-70096892 Msa0699490:intron 15.0%
!! AATTTCAAACTTAAAATGAA+AGG - chr4_4:70097095-70097114 None:intergenic 15.0%
!! AAATCAAAAGAAAAGAATAA+AGG + chr4_4:70097402-70097421 Msa0699490:intron 15.0%
!! TTTATATACTCTATTACATA+TGG + chr4_4:70097729-70097748 Msa0699490:intron 15.0%
!! TATAAAAGTGAATGTTTCTT+GGG - chr4_4:70096508-70096527 None:intergenic 20.0%
!! ATATAAAAGTGAATGTTTCT+TGG - chr4_4:70096509-70096528 None:intergenic 20.0%
!!! CTTTTATATATCCTAATCTT+TGG + chr4_4:70096520-70096539 Msa0699490:five_prime_UTR 20.0%
!!! AAGAAAATAGAAAAAGCATA+TGG - chr4_4:70096589-70096608 None:intergenic 20.0%
!! ATTATATGATATGGTAGTTA+TGG + chr4_4:70096882-70096901 Msa0699490:intron 20.0%
!! TATGTAACTATATATAGTTC+TGG + chr4_4:70097147-70097166 Msa0699490:intron 20.0%
!! AATTGATTGAGAATTGAAAA+AGG + chr4_4:70097370-70097389 Msa0699490:intron 20.0%
!!! TCTTTTCTTTTGATTTCTTT+GGG - chr4_4:70097398-70097417 None:intergenic 20.0%
!!! TTCTTTTCTTTTGATTTCTT+TGG - chr4_4:70097399-70097418 None:intergenic 20.0%
!!! TATATAAAAGTATACCAAGT+GGG - chr4_4:70097717-70097736 None:intergenic 20.0%
!! TATAAAAGTGAATGTTTCTT+GGG - chr4_4:70096508-70096527 None:intergenic 20.0%
!! ATATAAAAGTGAATGTTTCT+TGG - chr4_4:70096509-70096528 None:intergenic 20.0%
!!! CTTTTATATATCCTAATCTT+TGG + chr4_4:70096520-70096539 Msa0699490:five_prime_UTR 20.0%
!!! AAGAAAATAGAAAAAGCATA+TGG - chr4_4:70096589-70096608 None:intergenic 20.0%
!! ATTATATGATATGGTAGTTA+TGG + chr4_4:70096882-70096901 Msa0699490:intron 20.0%
!! TATGTAACTATATATAGTTC+TGG + chr4_4:70097147-70097166 Msa0699490:intron 20.0%
!! AATTGATTGAGAATTGAAAA+AGG + chr4_4:70097370-70097389 Msa0699490:intron 20.0%
!!! TCTTTTCTTTTGATTTCTTT+GGG - chr4_4:70097398-70097417 None:intergenic 20.0%
!!! TTCTTTTCTTTTGATTTCTT+TGG - chr4_4:70097399-70097418 None:intergenic 20.0%
!!! TATATAAAAGTATACCAAGT+GGG - chr4_4:70097717-70097736 None:intergenic 20.0%
! TTGAATGAGTTTAGTATAGT+TGG - chr4_4:70096562-70096581 None:intergenic 25.0%
! GTCTATTTATGTACAAGTTA+TGG - chr4_4:70096612-70096631 None:intergenic 25.0%
!!! TTCCATTGATGATTTTGATA+AGG + chr4_4:70097041-70097060 Msa0699490:CDS 25.0%
! TACCTTATCAAAATCATCAA+TGG - chr4_4:70097046-70097065 None:intergenic 25.0%
!!! TTTGAAATTCTTGTTGTTCT+TGG + chr4_4:70097106-70097125 Msa0699490:intron 25.0%
! TAATTCTTTGTATGAAGATG+AGG - chr4_4:70097659-70097678 None:intergenic 25.0%
!! ATATAAAAGTATACCAAGTG+GGG - chr4_4:70097716-70097735 None:intergenic 25.0%
!! GTATATAAAAGTATACCAAG+TGG - chr4_4:70097718-70097737 None:intergenic 25.0%
! CATTGAATGACATAAATGAA+AGG + chr4_4:70098074-70098093 Msa0699490:CDS 25.0%
!!! TTTTGTTATCATGCATGTTA+TGG + chr4_4:70098292-70098311 Msa0699490:three_prime_UTR 25.0%
! GAAACTATATTGTATACACA+TGG - chr4_4:70098452-70098471 None:intergenic 25.0%
! TTGAATGAGTTTAGTATAGT+TGG - chr4_4:70096562-70096581 None:intergenic 25.0%
! GTCTATTTATGTACAAGTTA+TGG - chr4_4:70096612-70096631 None:intergenic 25.0%
!!! TTCCATTGATGATTTTGATA+AGG + chr4_4:70097041-70097060 Msa0699490:CDS 25.0%
! TACCTTATCAAAATCATCAA+TGG - chr4_4:70097046-70097065 None:intergenic 25.0%
!!! TTTGAAATTCTTGTTGTTCT+TGG + chr4_4:70097106-70097125 Msa0699490:intron 25.0%
! TAATTCTTTGTATGAAGATG+AGG - chr4_4:70097659-70097678 None:intergenic 25.0%
!! ATATAAAAGTATACCAAGTG+GGG - chr4_4:70097716-70097735 None:intergenic 25.0%
!! GTATATAAAAGTATACCAAG+TGG - chr4_4:70097718-70097737 None:intergenic 25.0%
! CATTGAATGACATAAATGAA+AGG + chr4_4:70098074-70098093 Msa0699490:CDS 25.0%
!!! TTTTGTTATCATGCATGTTA+TGG + chr4_4:70098292-70098311 Msa0699490:three_prime_UTR 25.0%
! GAAACTATATTGTATACACA+TGG - chr4_4:70098452-70098471 None:intergenic 25.0%
! ATATGACGTGATGATCATTT+TGG + chr4_4:70097291-70097310 Msa0699490:intron 30.0%
!!! GATGATCATTTTGGTTCAAA+AGG + chr4_4:70097300-70097319 Msa0699490:intron 30.0%
ATGAACATATAAGCACATTG+AGG + chr4_4:70097545-70097564 Msa0699490:intron 30.0%
!!! CTGGTTTTGGATATTGTTAA+TGG - chr4_4:70097685-70097704 None:intergenic 30.0%
!! TTTGGTTCTGATAATAGTGA+TGG - chr4_4:70098242-70098261 None:intergenic 30.0%
ATCACTATTATCAGAACCAA+AGG + chr4_4:70098241-70098260 Msa0699490:CDS 30.0%
ACATGAAAACAAAGCAAATC+AGG - chr4_4:70098359-70098378 None:intergenic 30.0%
TTCGATCTTTACAATTTAGC+AGG - chr4_4:70098382-70098401 None:intergenic 30.0%
! ATATGACGTGATGATCATTT+TGG + chr4_4:70097291-70097310 Msa0699490:intron 30.0%
!!! GATGATCATTTTGGTTCAAA+AGG + chr4_4:70097300-70097319 Msa0699490:intron 30.0%
ATGAACATATAAGCACATTG+AGG + chr4_4:70097545-70097564 Msa0699490:intron 30.0%
!!! CTGGTTTTGGATATTGTTAA+TGG - chr4_4:70097685-70097704 None:intergenic 30.0%
!! TTTGGTTCTGATAATAGTGA+TGG - chr4_4:70098242-70098261 None:intergenic 30.0%
ATCACTATTATCAGAACCAA+AGG + chr4_4:70098241-70098260 Msa0699490:CDS 30.0%
ACATGAAAACAAAGCAAATC+AGG - chr4_4:70098359-70098378 None:intergenic 30.0%
TTCGATCTTTACAATTTAGC+AGG - chr4_4:70098382-70098401 None:intergenic 30.0%
TGACAAAAAATGATGAGGAG+GGG - chr4_4:70096634-70096653 None:intergenic 35.0%
GTGACAAAAAATGATGAGGA+GGG - chr4_4:70096635-70096654 None:intergenic 35.0%
TGTGACAAAAAATGATGAGG+AGG - chr4_4:70096636-70096655 None:intergenic 35.0%
GTGTGTGACAAAAAATGATG+AGG - chr4_4:70096639-70096658 None:intergenic 35.0%
GAGGCTATTAGTATAAGCTA+GGG - chr4_4:70096692-70096711 None:intergenic 35.0%
TGAGGCTATTAGTATAAGCT+AGG - chr4_4:70096693-70096712 None:intergenic 35.0%
TATACTAATAGCCTCAGCTA+TGG + chr4_4:70096697-70096716 Msa0699490:CDS 35.0%
ATTGTGATAATCCCAACCTA+GGG - chr4_4:70096728-70096747 None:intergenic 35.0%
TGGTTATCTTGAAGATGCTT+TGG + chr4_4:70096951-70096970 Msa0699490:CDS 35.0%
! TCTGGAATTTCAACCCTATA+TGG + chr4_4:70097165-70097184 Msa0699490:CDS 35.0%
GATCAGATAGAAAGGATTTG+TGG + chr4_4:70097218-70097237 Msa0699490:CDS 35.0%
! GAAAGGATTTGTGGATTTTC+AGG + chr4_4:70097227-70097246 Msa0699490:CDS 35.0%
! GTGTCTTCTAGAAGAATGTT+TGG - chr4_4:70097589-70097608 None:intergenic 35.0%
TATGAAGATGAGGAGGAATT+TGG - chr4_4:70097649-70097668 None:intergenic 35.0%
TTCTTTGTATGAAGATGAGG+AGG - chr4_4:70097656-70097675 None:intergenic 35.0%
TAAAATACGGACCACAATTG+CGG + chr4_4:70097806-70097825 Msa0699490:intron 35.0%
TAGTACTACTACTAGTGATG+AGG + chr4_4:70097955-70097974 Msa0699490:CDS 35.0%
GGTGATGAGAAAGAAGAAAA+AGG + chr4_4:70097976-70097995 Msa0699490:CDS 35.0%
GATGAGAAAGAAGAAAAAGG+TGG + chr4_4:70097979-70097998 Msa0699490:CDS 35.0%
GAAAGAAGAAAAAGGTGGTA+AGG + chr4_4:70097984-70098003 Msa0699490:CDS 35.0%
TTGAGTGTGGATTCTAGTAA+GGG - chr4_4:70098206-70098225 None:intergenic 35.0%
TGACAAAAAATGATGAGGAG+GGG - chr4_4:70096634-70096653 None:intergenic 35.0%
GTGACAAAAAATGATGAGGA+GGG - chr4_4:70096635-70096654 None:intergenic 35.0%
TGTGACAAAAAATGATGAGG+AGG - chr4_4:70096636-70096655 None:intergenic 35.0%
GTGTGTGACAAAAAATGATG+AGG - chr4_4:70096639-70096658 None:intergenic 35.0%
GAGGCTATTAGTATAAGCTA+GGG - chr4_4:70096692-70096711 None:intergenic 35.0%
TGAGGCTATTAGTATAAGCT+AGG - chr4_4:70096693-70096712 None:intergenic 35.0%
TATACTAATAGCCTCAGCTA+TGG + chr4_4:70096697-70096716 Msa0699490:CDS 35.0%
ATTGTGATAATCCCAACCTA+GGG - chr4_4:70096728-70096747 None:intergenic 35.0%
TGGTTATCTTGAAGATGCTT+TGG + chr4_4:70096951-70096970 Msa0699490:CDS 35.0%
! TCTGGAATTTCAACCCTATA+TGG + chr4_4:70097165-70097184 Msa0699490:CDS 35.0%
GATCAGATAGAAAGGATTTG+TGG + chr4_4:70097218-70097237 Msa0699490:CDS 35.0%
! GAAAGGATTTGTGGATTTTC+AGG + chr4_4:70097227-70097246 Msa0699490:CDS 35.0%
! GTGTCTTCTAGAAGAATGTT+TGG - chr4_4:70097589-70097608 None:intergenic 35.0%
TATGAAGATGAGGAGGAATT+TGG - chr4_4:70097649-70097668 None:intergenic 35.0%
TTCTTTGTATGAAGATGAGG+AGG - chr4_4:70097656-70097675 None:intergenic 35.0%
TAAAATACGGACCACAATTG+CGG + chr4_4:70097806-70097825 Msa0699490:intron 35.0%
TAGTACTACTACTAGTGATG+AGG + chr4_4:70097955-70097974 Msa0699490:CDS 35.0%
GGTGATGAGAAAGAAGAAAA+AGG + chr4_4:70097976-70097995 Msa0699490:CDS 35.0%
GATGAGAAAGAAGAAAAAGG+TGG + chr4_4:70097979-70097998 Msa0699490:CDS 35.0%
GAAAGAAGAAAAAGGTGGTA+AGG + chr4_4:70097984-70098003 Msa0699490:CDS 35.0%
TTGAGTGTGGATTCTAGTAA+GGG - chr4_4:70098206-70098225 None:intergenic 35.0%
GATTGTGATAATCCCAACCT+AGG - chr4_4:70096729-70096748 None:intergenic 40.0%
GGTTGGGATTATCACAATCT+TGG + chr4_4:70096730-70096749 Msa0699490:CDS 40.0%
CAAGAGTCTGATTTCTCAAC+TGG + chr4_4:70096931-70096950 Msa0699490:CDS 40.0%
GAAGATGCTTTGGTTGAGTT+CGG + chr4_4:70096961-70096980 Msa0699490:CDS 40.0%
AGTAGAAATTCTCCACTGGT+TGG - chr4_4:70097193-70097212 None:intergenic 40.0%
ATGCAGTAGAAATTCTCCAC+TGG - chr4_4:70097197-70097216 None:intergenic 40.0%
AGTGGAGAATTTCTACTGCA+TGG + chr4_4:70097196-70097215 Msa0699490:CDS 40.0%
ACTGCATGGATCAGATAGAA+AGG + chr4_4:70097210-70097229 Msa0699490:CDS 40.0%
! ATGGTTTGCAACTGCAATTG+CGG - chr4_4:70097876-70097895 None:intergenic 40.0%
AAGGACAACAACAACAAGAG+TGG + chr4_4:70098003-70098022 Msa0699490:CDS 40.0%
CTTGAGTGTGGATTCTAGTA+AGG - chr4_4:70098207-70098226 None:intergenic 40.0%
CTTACTAGAATCCACACTCA+AGG + chr4_4:70098205-70098224 Msa0699490:CDS 40.0%
!! GTACTGTGAATGTTAGCCTT+TGG - chr4_4:70098260-70098279 None:intergenic 40.0%
GCAAATCAGGCTAAAAAAGC+TGG - chr4_4:70098346-70098365 None:intergenic 40.0%
GATTGTGATAATCCCAACCT+AGG - chr4_4:70096729-70096748 None:intergenic 40.0%
GGTTGGGATTATCACAATCT+TGG + chr4_4:70096730-70096749 Msa0699490:CDS 40.0%
CAAGAGTCTGATTTCTCAAC+TGG + chr4_4:70096931-70096950 Msa0699490:CDS 40.0%
GAAGATGCTTTGGTTGAGTT+CGG + chr4_4:70096961-70096980 Msa0699490:CDS 40.0%
AGTAGAAATTCTCCACTGGT+TGG - chr4_4:70097193-70097212 None:intergenic 40.0%
ATGCAGTAGAAATTCTCCAC+TGG - chr4_4:70097197-70097216 None:intergenic 40.0%
AGTGGAGAATTTCTACTGCA+TGG + chr4_4:70097196-70097215 Msa0699490:CDS 40.0%
ACTGCATGGATCAGATAGAA+AGG + chr4_4:70097210-70097229 Msa0699490:CDS 40.0%
! ATGGTTTGCAACTGCAATTG+CGG - chr4_4:70097876-70097895 None:intergenic 40.0%
AAGGACAACAACAACAAGAG+TGG + chr4_4:70098003-70098022 Msa0699490:CDS 40.0%
CTTGAGTGTGGATTCTAGTA+AGG - chr4_4:70098207-70098226 None:intergenic 40.0%
CTTACTAGAATCCACACTCA+AGG + chr4_4:70098205-70098224 Msa0699490:CDS 40.0%
!! GTACTGTGAATGTTAGCCTT+TGG - chr4_4:70098260-70098279 None:intergenic 40.0%
GCAAATCAGGCTAAAAAAGC+TGG - chr4_4:70098346-70098365 None:intergenic 40.0%
GTCAATGCAGGCCAAAGATT+AGG - chr4_4:70096534-70096553 None:intergenic 45.0%
TAGTTGGAGTCAGTCAATGC+AGG - chr4_4:70096546-70096565 None:intergenic 45.0%
CTATGGTTCTTCCCTAGGTT+GGG + chr4_4:70096714-70096733 Msa0699490:CDS 45.0%
TTGCAGTCACAATTACGCTG+CGG + chr4_4:70097765-70097784 Msa0699490:intron 45.0%
CCTGGCTTCACTAATGCAAA+TGG - chr4_4:70098034-70098053 None:intergenic 45.0%
CCATTTGCATTAGTGAAGCC+AGG + chr4_4:70098031-70098050 Msa0699490:CDS 45.0%
TTTGCATTAGTGAAGCCAGG+AGG + chr4_4:70098034-70098053 Msa0699490:CDS 45.0%
GGATCTTAATGCCTCCAACA+AGG + chr4_4:70098095-70098114 Msa0699490:CDS 45.0%
!! CAGTTGGTGACTTTGCATGT+CGG + chr4_4:70098131-70098150 Msa0699490:CDS 45.0%
ATCCACACTCAAGGAAGAAG+AGG + chr4_4:70098214-70098233 Msa0699490:CDS 45.0%
GTCAATGCAGGCCAAAGATT+AGG - chr4_4:70096534-70096553 None:intergenic 45.0%
TAGTTGGAGTCAGTCAATGC+AGG - chr4_4:70096546-70096565 None:intergenic 45.0%
CTATGGTTCTTCCCTAGGTT+GGG + chr4_4:70096714-70096733 Msa0699490:CDS 45.0%
TTGCAGTCACAATTACGCTG+CGG + chr4_4:70097765-70097784 Msa0699490:intron 45.0%
CCTGGCTTCACTAATGCAAA+TGG - chr4_4:70098034-70098053 None:intergenic 45.0%
CCATTTGCATTAGTGAAGCC+AGG + chr4_4:70098031-70098050 Msa0699490:CDS 45.0%
TTTGCATTAGTGAAGCCAGG+AGG + chr4_4:70098034-70098053 Msa0699490:CDS 45.0%
GGATCTTAATGCCTCCAACA+AGG + chr4_4:70098095-70098114 Msa0699490:CDS 45.0%
!! CAGTTGGTGACTTTGCATGT+CGG + chr4_4:70098131-70098150 Msa0699490:CDS 45.0%
ATCCACACTCAAGGAAGAAG+AGG + chr4_4:70098214-70098233 Msa0699490:CDS 45.0%
!!! TATTATTTTAATTTACTAAT+TGG + chr4_4:70097503-70097522 Msa0699490:intron 5.0%
!!! ATATTTATAGTTTTAATTTA+TGG - chr4_4:70097895-70097914 None:intergenic 5.0%
!! TATTATAAATTATTAAAAAC+AGG + chr4_4:70097929-70097948 Msa0699490:intron 5.0%
!!! TATTATTTTAATTTACTAAT+TGG + chr4_4:70097503-70097522 Msa0699490:intron 5.0%
!!! ATATTTATAGTTTTAATTTA+TGG - chr4_4:70097895-70097914 None:intergenic 5.0%
!! TATTATAAATTATTAAAAAC+AGG + chr4_4:70097929-70097948 Msa0699490:intron 5.0%
CTAGGGAAGAACCATAGCTG+AGG - chr4_4:70096711-70096730 None:intergenic 50.0%
CTCAGCTATGGTTCTTCCCT+AGG + chr4_4:70096709-70096728 Msa0699490:CDS 50.0%
GCTATGGTTCTTCCCTAGGT+TGG + chr4_4:70096713-70096732 Msa0699490:CDS 50.0%
!! CCACTGGTTGGTGCCATATA+GGG - chr4_4:70097181-70097200 None:intergenic 50.0%
!! TCCACTGGTTGGTGCCATAT+AGG - chr4_4:70097182-70097201 None:intergenic 50.0%
GCACATTGCAACCGCAATTG+TGG - chr4_4:70097820-70097839 None:intergenic 50.0%
ACATCACCTTCTTCTCCTCC+TGG - chr4_4:70098052-70098071 None:intergenic 50.0%
TCACCAACTGGATGCCTTAC+TGG - chr4_4:70098121-70098140 None:intergenic 50.0%
CGACATGCAAAGTCACCAAC+TGG - chr4_4:70098133-70098152 None:intergenic 50.0%
TGCCTCTTCTTCCTTGAGTG+TGG - chr4_4:70098219-70098238 None:intergenic 50.0%
CTAGGGAAGAACCATAGCTG+AGG - chr4_4:70096711-70096730 None:intergenic 50.0%
CTCAGCTATGGTTCTTCCCT+AGG + chr4_4:70096709-70096728 Msa0699490:CDS 50.0%
GCTATGGTTCTTCCCTAGGT+TGG + chr4_4:70096713-70096732 Msa0699490:CDS 50.0%
!! CCACTGGTTGGTGCCATATA+GGG - chr4_4:70097181-70097200 None:intergenic 50.0%
!! TCCACTGGTTGGTGCCATAT+AGG - chr4_4:70097182-70097201 None:intergenic 50.0%
GCACATTGCAACCGCAATTG+TGG - chr4_4:70097820-70097839 None:intergenic 50.0%
ACATCACCTTCTTCTCCTCC+TGG - chr4_4:70098052-70098071 None:intergenic 50.0%
TCACCAACTGGATGCCTTAC+TGG - chr4_4:70098121-70098140 None:intergenic 50.0%
CGACATGCAAAGTCACCAAC+TGG - chr4_4:70098133-70098152 None:intergenic 50.0%
TGCCTCTTCTTCCTTGAGTG+TGG - chr4_4:70098219-70098238 None:intergenic 50.0%
CCCTATATGGCACCAACCAG+TGG + chr4_4:70097178-70097197 Msa0699490:CDS 55.0%
!!! TGGGGTGTCTCTGCTGGTTT+TGG - chr4_4:70097698-70097717 None:intergenic 55.0%
GTGAAGCCAGGAGGAGAAGA+AGG + chr4_4:70098043-70098062 Msa0699490:CDS 55.0%
TGCCTCCAACAAGGCCAGTA+AGG + chr4_4:70098104-70098123 Msa0699490:CDS 55.0%
!! TGCCTTACTGGCCTTGTTGG+AGG - chr4_4:70098109-70098128 None:intergenic 55.0%
!! GGATGCCTTACTGGCCTTGT+TGG - chr4_4:70098112-70098131 None:intergenic 55.0%
! AGGCCAGTAAGGCATCCAGT+TGG + chr4_4:70098115-70098134 Msa0699490:CDS 55.0%
GGACCTTGTGCAGATACGCA+TGG - chr4_4:70098157-70098176 None:intergenic 55.0%
TGCGTATCTGCACAAGGTCC+AGG + chr4_4:70098157-70098176 Msa0699490:CDS 55.0%
ACTGCTTTGCCTGAAAGGCC+TGG - chr4_4:70098178-70098197 None:intergenic 55.0%
AGGCCTTTCAGGCAAAGCAG+TGG + chr4_4:70098177-70098196 Msa0699490:CDS 55.0%
CCACCACTGCTTTGCCTGAA+AGG - chr4_4:70098183-70098202 None:intergenic 55.0%
CCTTTCAGGCAAAGCAGTGG+TGG + chr4_4:70098180-70098199 Msa0699490:CDS 55.0%
CCCTATATGGCACCAACCAG+TGG + chr4_4:70097178-70097197 Msa0699490:CDS 55.0%
!!! TGGGGTGTCTCTGCTGGTTT+TGG - chr4_4:70097698-70097717 None:intergenic 55.0%
GTGAAGCCAGGAGGAGAAGA+AGG + chr4_4:70098043-70098062 Msa0699490:CDS 55.0%
TGCCTCCAACAAGGCCAGTA+AGG + chr4_4:70098104-70098123 Msa0699490:CDS 55.0%
!! TGCCTTACTGGCCTTGTTGG+AGG - chr4_4:70098109-70098128 None:intergenic 55.0%
!! GGATGCCTTACTGGCCTTGT+TGG - chr4_4:70098112-70098131 None:intergenic 55.0%
! AGGCCAGTAAGGCATCCAGT+TGG + chr4_4:70098115-70098134 Msa0699490:CDS 55.0%
GGACCTTGTGCAGATACGCA+TGG - chr4_4:70098157-70098176 None:intergenic 55.0%
TGCGTATCTGCACAAGGTCC+AGG + chr4_4:70098157-70098176 Msa0699490:CDS 55.0%
ACTGCTTTGCCTGAAAGGCC+TGG - chr4_4:70098178-70098197 None:intergenic 55.0%
AGGCCTTTCAGGCAAAGCAG+TGG + chr4_4:70098177-70098196 Msa0699490:CDS 55.0%
CCACCACTGCTTTGCCTGAA+AGG - chr4_4:70098183-70098202 None:intergenic 55.0%
CCTTTCAGGCAAAGCAGTGG+TGG + chr4_4:70098180-70098199 Msa0699490:CDS 55.0%
ACCAGCAGAGACACCCCACT+TGG + chr4_4:70097700-70097719 Msa0699490:intron 60.0%
! ACCAAGTGGGGTGTCTCTGC+TGG - chr4_4:70097704-70097723 None:intergenic 60.0%
CGGCCATGCGTATCTGCACA+AGG + chr4_4:70098151-70098170 Msa0699490:CDS 60.0%
GCACAAGGTCCAGGCCTTTC+AGG + chr4_4:70098166-70098185 Msa0699490:CDS 60.0%
ACCAGCAGAGACACCCCACT+TGG + chr4_4:70097700-70097719 Msa0699490:intron 60.0%
! ACCAAGTGGGGTGTCTCTGC+TGG - chr4_4:70097704-70097723 None:intergenic 60.0%
CGGCCATGCGTATCTGCACA+AGG + chr4_4:70098151-70098170 Msa0699490:CDS 60.0%
GCACAAGGTCCAGGCCTTTC+AGG + chr4_4:70098166-70098185 Msa0699490:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 70096497 70098504 70096497 ID=Msa0699490;Name=Msa0699490
chr4_4 mRNA 70096497 70098504 70096497 ID=Msa0699490-mRNA-1;Parent=Msa0699490;Name=Msa0699490-mRNA-1;_AED=0.18;_eAED=0.18;_QI=176|0.66|1|1|1|1|4|237|224
chr4_4 exon 70096497 70096781 70096497 ID=Msa0699490-mRNA-1:exon:21177;Parent=Msa0699490-mRNA-1
chr4_4 exon 70096899 70097062 70096899 ID=Msa0699490-mRNA-1:exon:21178;Parent=Msa0699490-mRNA-1
chr4_4 exon 70097164 70097248 70097164 ID=Msa0699490-mRNA-1:exon:21179;Parent=Msa0699490-mRNA-1
chr4_4 exon 70097951 70098504 70097951 ID=Msa0699490-mRNA-1:exon:21180;Parent=Msa0699490-mRNA-1
chr4_4 five_prime_UTR 70096497 70096672 70096497 ID=Msa0699490-mRNA-1:five_prime_utr;Parent=Msa0699490-mRNA-1
chr4_4 CDS 70096673 70096781 70096673 ID=Msa0699490-mRNA-1:cds;Parent=Msa0699490-mRNA-1
chr4_4 CDS 70096899 70097062 70096899 ID=Msa0699490-mRNA-1:cds;Parent=Msa0699490-mRNA-1
chr4_4 CDS 70097164 70097248 70097164 ID=Msa0699490-mRNA-1:cds;Parent=Msa0699490-mRNA-1
chr4_4 CDS 70097951 70098267 70097951 ID=Msa0699490-mRNA-1:cds;Parent=Msa0699490-mRNA-1
chr4_4 three_prime_UTR 70098268 70098504 70098268 ID=Msa0699490-mRNA-1:three_prime_utr;Parent=Msa0699490-mRNA-1
Gene Sequence

>Msa0699490

ATGAATGATCTTCATTCCCTAGCTTATACTAATAGCCTCAGCTATGGTTCTTCCCTAGGTTGGGATTATCACAATCTTGGACTGCTCAATTCAGACAATATGTCTTTAATTATGGATGCAAGTGCAGCTTCATTTTCAACTCAAGAGTCTGATTTCTCAACTGGTTATCTTGAAGATGCTTTGGTTGAGTTCGGTGAAAGTTCTAAACGTAGACGCTTGCTTACTGACGATGAACAAAGCAAGAATACTATTTCCATTGATGATTTTGATAAGTTCTGGAATTTCAACCCTATATGGCACCAACCAGTGGAGAATTTCTACTGCATGGATCAGATAGAAAGGATTTGTGGATTTTCAGGAAGTAGTACTACTACTAGTGATGAGGTGATGAGAAAGAAGAAAAAGGTGGTAAGGACAACAACAACAAGAGTGGTATATCCATTTGCATTAGTGAAGCCAGGAGGAGAAGAAGGTGATGTGACATTGAATGACATAAATGAAAGGATCTTAATGCCTCCAACAAGGCCAGTAAGGCATCCAGTTGGTGACTTTGCATGTCGGCCATGCGTATCTGCACAAGGTCCAGGCCTTTCAGGCAAAGCAGTGGTGGCCCTTACTAGAATCCACACTCAAGGAAGAAGAGGCACCATCACTATTATCAGAACCAAAGGCTAA

Protein sequence

>Msa0699490

MNDLHSLAYTNSLSYGSSLGWDYHNLGLLNSDNMSLIMDASAASFSTQESDFSTGYLEDALVEFGESSKRRRLLTDDEQSKNTISIDDFDKFWNFNPIWHQPVENFYCMDQIERICGFSGSSTTTSDEVMRKKKKVVRTTTTRVVYPFALVKPGGEEGDVTLNDINERILMPPTRPVRHPVGDFACRPCVSAQGPGLSGKAVVALTRIHTQGRRGTITIIRTKG*